CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025069	Bordetella bronchiseptica strain I124 chromosome, complete genome	4 crisprs	csa3,WYL,DEDDh,cas3,DinG	1	3	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025069_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025069_1

843158-843264

Orphan

Consensus_repeat	Method
GATGGTGCCTGGGGAGCCAGGCACCGGAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025069_1

>merge|CP025069|1|843158-843264|CRISPRCasFinder
GATGGTGCCTGGGGAGCCAGGCACCGGAGGAAGTCAGCCGGAGCCTGGCTCCCGTGGGGCGTTGTGGGCCCGCGGGAGATGGTGCCTGGGGAGCCAGGCACCGGAGG

>CP025069|1|1|843158-843264|CRISPRCasFinder
GATGGTGCCTGGGGAGCCAGGCACCGGAGG	AAGTCAGCCGGAGCCTGGCTCCCGTGGGGCGTTGTGGGCCCGCGGGA
GATGGTGCCTGGGGAGCCAGGCACCGGAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP025069.1\|AZW42741.1\|836865_837477_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227111
CP025069.1\|AZW42749.1\|847086_847296_-\|DUF2783-domain-containing-protein	unknown	unknown	gnl\|CDD\|371304
CP025069.1\|AZW42755.1\|853487_854387_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731
CP025069.1\|AZW42736.1\|830223_831345_+\|glycosyltransferase-family-4-protein	unknown	unknown	gnl\|CDD\|340847
CP025069.1\|AZW42752.1\|850131_850959_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	unknown	unknown	gnl\|CDD\|234899
CP025069.1\|AZW42746.1\|843267_844581_-\|fumarylacetoacetase	unknown	unknown	gnl\|CDD\|162276
CP025069.1\|AZW42740.1\|835203_836586_-\|phosphomannomutase/phosphoglucomutase	unknown	unknown	gnl\|CDD\|100091
CP025069.1\|AZW42745.1\|841115_843077_+\|LTA-synthase-family-protein	unknown	unknown	gnl\|CDD\|224287
CP025069.1\|AZW42738.1\|832492_833623_+\|glycosyltransferase-family-1-protein	unknown	unknown	gnl\|CDD\|340837
CP025069.1\|AZW42751.1\|849088_850042_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|293840
CP025069.1\|AZW42742.1\|837569_838985_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP025069.1\|AZW42754.1\|852840_853440_+\|lipoprotein-localization-protein-LolB	unknown	unknown	gnl\|CDD\|234578
CP025069.1\|AZW42750.1\|847307_848987_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|236158
CP025069.1\|AZW42753.1\|850957_852844_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350
CP025069.1\|AZW42748.1\|846168_847077_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|176148
CP025069.1\|AZW42737.1\|831341_832496_+\|glycosyl-transferase	unknown	unknown	gnl\|CDD\|340836
CP025069.1\|AZW42743.1\|839002_839713_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|223816
CP025069.1\|AZW42744.1\|839709_841035_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP025069.1\|AZW42739.1\|833630_835196_-\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|234679
CP025069.1\|AZW42747.1\|844687_845986_-\|homogentisate-1,2-dioxygenase	unknown	unknown	gnl\|CDD\|235421

Protein	Function_ID	Function_description	E-value
CP025069.1\|AZW42741.1\|836865_837477_+\|hypothetical-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	3.82507e-06
CP025069.1\|AZW42749.1\|847086_847296_-\|DUF2783-domain-containing-protein	gnl\|CDD\|371304	pfam10932, DUF2783, Protein of unknown function (DUF2783). This is a bacterial family of uncharacterized protein.	4.00804e-29
CP025069.1\|AZW42755.1\|853487_854387_+\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	1.48798e-159
CP025069.1\|AZW42736.1\|830223_831345_+\|glycosyltransferase-family-4-protein	gnl\|CDD\|340847	cd03820, GT4_AmsD-like, amylovoran biosynthesis glycosyltransferase AmsD and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. AmSD in Erwinia amylovora has been shown to be involved in the biosynthesis of amylovoran, the acidic exopolysaccharide acting as a virulence factor. This enzyme may be responsible for the formation of galactose alpha-1,6 linkages in amylovoran.	4.80172e-144
CP025069.1\|AZW42752.1\|850131_850959_-\|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	3.67058e-154
CP025069.1\|AZW42746.1\|843267_844581_-\|fumarylacetoacetase	gnl\|CDD\|162276	TIGR01266, fum_ac_acetase, fumarylacetoacetase. This enzyme catalyzes the final step in the breakdown of tyrosine or phenylalanine to fumarate and acetoacetate. [Energy metabolism, Amino acids and amines].	2.78402e-171
CP025069.1\|AZW42740.1\|835203_836586_-\|phosphomannomutase/phosphoglucomutase	gnl\|CDD\|100091	cd03089, PMM_PGM, The phosphomannomutase/phosphoglucomutase (PMM/PGM) bifunctional enzyme catalyzes the reversible conversion of 1-phospho to 6-phospho-sugars (e.g. between mannose-1-phosphate and mannose-6-phosphate or glucose-1-phosphate and glucose-6-phosphate) via a bisphosphorylated sugar intermediate. The reaction involves two phosphoryl transfers, with an intervening 180 degree reorientation of the reaction intermediate during catalysis. Reorientation of the intermediate occurs without dissociation from the active site of the enzyme and is thus, a simple example of processivity, as defined by multiple rounds of catalysis without release of substrate. Glucose-6-phosphate and glucose-1-phosphate are known to be utilized for energy metabolism and cell surface construction, respectively. PMM/PGM belongs to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the phosphoglucomutases (PGM1 and PGM2). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
CP025069.1\|AZW42745.1\|841115_843077_+\|LTA-synthase-family-protein	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	5.34076e-83
CP025069.1\|AZW42738.1\|832492_833623_+\|glycosyltransferase-family-1-protein	gnl\|CDD\|340837	cd03808, GT4_CapM-like, capsular polysaccharide biosynthesis glycosyltransferase CapM and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. CapM in Staphylococcus aureus is required for the synthesis of type 1 capsular polysaccharides.	2.69613e-149
CP025069.1\|AZW42751.1\|849088_850042_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|293840	cd16282, metallo-hydrolase-like_MBL-fold, uncharacterized subgroup of the MBL-fold_metallo-hydrolase superfamily; MBL-fold metallo hydrolase domain. Members of the MBL-fold metallohydrolase superfamily are mainly hydrolytic enzymes which carry out a variety of biological functions. The class B metal beta-lactamases (MBLs) for which this fold was named perform only a small fraction of the activities included in this superfamily.Activities carried out by superfamily members include class B beta-lactamases, hydroxyacylglutathione hydrolases, AHL (acyl homoserine lactone) lactonases, persulfide dioxygenases, flavodiiron proteins, cleavage and polyadenylation specificity factors such as the Int9 and Int11 subunits of Integrator, Sdsa1-like and AtsA-like arylsulfatases, 5'-exonucleases human SNM1A and yeast Pso2p, ribonuclease J and ribonuclease Z, cyclic nucleotide phosphodiesterases, insecticide hydrolases, and proteins required for natural transformation competence. Classical members of the superfamily are di-, or less commonly mono-, zinc-ion-dependent hydrolases, however the diversity of biological roles is reflected in variations in the active site metallo-chemistry.	5.66516e-73
CP025069.1\|AZW42742.1\|837569_838985_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.84923e-127
CP025069.1\|AZW42754.1\|852840_853440_+\|lipoprotein-localization-protein-LolB	gnl\|CDD\|234578	PRK00022, lolB, lipoprotein localization protein LolB.	8.51454e-50
CP025069.1\|AZW42750.1\|847307_848987_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|236158	PRK08132, PRK08132, FAD-dependent oxidoreductase; Provisional.	0
CP025069.1\|AZW42753.1\|850957_852844_+\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	1.37052e-18
CP025069.1\|AZW42748.1\|846168_847077_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|176148	cd08459, PBP2_DntR_NahR_LinR_like, The C-terminal substrate binding domain of LysR-type transcriptional regulators that are involved in the catabolism of dinitrotoluene, naphthalene and gamma-hexachlorohexane; contains the type 2 periplasmic binding fold. This CD includes LysR-like bacterial transcriptional regulators, DntR, NahR, and LinR, which are involved in the degradation of aromatic compounds. The transcription of the genes encoding enzymes involved in such degradation is regulated and expression of these enzymes is enhanced by inducers, which are either an intermediate in the metabolic pathway or compounds to be degraded. DntR from Burkholderia species controls genes encoding enzymes for oxidative degradation of the nitro-aromatic compound 2,4-dinitrotoluene. The active form of DntR is homotetrameric, consisting of a dimer of dimers. NahR is a salicylate-dependent transcription activator of the nah and sal operons for naphthalene degradation. Salicylic acid is an intermediate of the oxidative degradation of the aromatic ring in soil bacteria. LinR positively regulates expression of the genes (linD and linE) encoding enzymes for gamma-hexachlorocyclohexane (a haloorganic insecticide) degradation. Expression of linD and linE are induced by their substrates, 2,5-dichlorohydroquinone (2,5-DCHQ) and chlorohydroquinone (CHQ). The structural topology of this substrate-binding domain is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	4.88079e-71
CP025069.1\|AZW42737.1\|831341_832496_+\|glycosyl-transferase	gnl\|CDD\|340836	cd03807, GT4_WbnK-like, Shigella dysenteriae WbnK and similar proteins. This family is most closely related to the GT4 family of glycosyltransferases. WbnK in Shigella dysenteriae has been shown to be involved in the type 7 O-antigen biosynthesis.	6.9492e-113
CP025069.1\|AZW42743.1\|839002_839713_+\|DNA-binding-response-regulator	gnl\|CDD\|223816	COG0745, OmpR, Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain [Signal transduction mechanisms / Transcription].	6.88249e-66
CP025069.1\|AZW42744.1\|839709_841035_+\|sensor-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	8.92834e-35
CP025069.1\|AZW42739.1\|833630_835196_-\|glucose-6-phosphate-isomerase	gnl\|CDD\|234679	PRK00179, pgi, glucose-6-phosphate isomerase; Reviewed.	0
CP025069.1\|AZW42747.1\|844687_845986_-\|homogentisate-1,2-dioxygenase	gnl\|CDD\|235421	PRK05341, PRK05341, homogentisate 1,2-dioxygenase; Provisional.	0

>CP025069.1|AZW42745.1|841115_843077_+|LTA-synthase-family-protein
MRVFFCNEADEAPARPPPTRNPVRRLTIRFAIAILVLLTLSRLGLSAWQWDRVQAAGGLGPIMLGGLRMDLRLLALVLALPAVLAPWFGHRAWAATVTAWWYRVWWMLFVLLEVSTPQFIAEYDTRPNRLYFEYLVHPREVASMLWEGYKGVLLAAFVVLVLAAWLAVRLFPTGRQDGFMKWWKRPFVTLAVLAVVVLAARGTLQHRPINAAMVAFSSDAMVNTLPLNSLGNVLDAAYRLQDERSSAALYPPMKTEEMNRIVRAVAGLEDPPLDARYPSLHKQIATVRRDKPLNLVIILQESLGAQYVGSLGGRDLTPQLDRLAKDGWMFNRAYATGTRSVRGLEAVTAGFLPTVAEAVLKLPRSQTGFFTLADLLGRHGFHSRFIYGGEAHFDNMRGFFLGNGFNEVIDRQSFVDPVFVGSWGASDEDMFNQLDRLLRADDGKSTFTLAFSVSNHSPWEYPEGRIEPVGDPASVDNTVRYADWAMGQFFDKARKAPYWDNTVFLVIADHDSRVYGANLVPVRHFQIPALILGGTVAPRSDDRIVSQIDMGPTLLSLIGLDNVNPMLGADLTQRDPNRAIMQYGDNFGYLKGDSLLVIEPGKDPREYRYTAAASMSDEKYAPIDIDPALRDEALAFALWPSWAYREERYKLPK
>CP025069.1|AZW42744.1|839709_841035_+|sensor-histidine-kinase
MSSRPVSGNGAGSLTQRVVWALTGSVALFVTALVLLSYLTFDKMEDDLVNDILSTETDRLIQHVAADDHFLPERGARELGGAMRAWLVRAGAAQPDLPQALHGLGVGMHLLEPGAETWHVMVAEVEGARIYVLYDATDNEARVHDFGLFVLGVGAICIVAAYGISRRVAGVAVGPLVELTRRLANWAPGAPDLAVTRDDEAGDSQVEAFNRVQNQVDRSIAREREFSVNLSHEVRTPLAAIRSDSEMMLLAATLDAGQRTRLARIVANVDNVSAALESARAMARDEPRAPERVDLAACMDDAWRGLELNAEAAGLAFANRIPAGSEHVLDRYAMLTVLRNLVRNAIEHAAPATLTAALRPDGALELRDDGRGIAAEELPFVFQRFYSGRLRDTADNGSHELPRGLGLAIAKRVCDMQGWRLSVDSERDGPARGTRFVLRFT
>CP025069.1|AZW42743.1|839002_839713_+|DNA-binding-response-regulator
MSATPASRHYRILIVEDDLTIAANLYDYLQARGFVPDAAYDGRSALALLDEHGFDAMVLDVGLPGMDGHAVLHAVRVERRAALPVLMLTARDGLDDKLAGFAHGADDYLTKPFALAEVEARLLALIQRSRGAVVDSLRSFGPLQFDSATREVAVHGKPVHLTRKCGMIVEALLRDPGRVVSREQLETALWGDDPPSSDALRSQVHLLRRALADAGFDGIETVHGTGWRLTLPAGGA
>CP025069.1|AZW42742.1|837569_838985_+|FAD-binding-oxidoreductase
MTLPSELQALLGPSHVLTGDDAEPFLLDWRRRYRGRALAVVRPGSAEEVAAVVRLCQAHGAPLVPQGGNTGLCGGATPDDSGSAVVLSTTRLNRVRAIDTDNDTITVEAGCVLQAVQQAAEQAGRLFPLSLAAEGSCTIGGNLATNAGGTQVLRYGNARELTLGLEVVTAEGEIWNGLRGLRKDNTGYDLRDLYVGSEGTLGIITAATLKLFPLPVATCTALLALDSIDAAVEVLSRARGGFGASLTGFELMAADCLQAVTRLFPQQRLPFDGASAQAPWFALLELSDSESEEHARARFEAVVGAAIEDGLVADAAIAENLAQSQALWHLRESIPLAEAELGKSIKHDVSIPISAIAAFVHQTNGLLQARFPGVRNVIFGHLGDGNLHYNVARGPGQTEADLLALQSRVYDVVHDSVQAFAGSISAEHGVGQLKRDELPRYKSAVELALMKRLKTALDPRGLLNPGKVLQA
>CP025069.1|AZW42741.1|836865_837477_+|hypothetical-protein
MSADISFVSTRRRMAPGRVDLAAGGERRLDIPVHAGVDGSVEAGRAWERCVWRAARVLIAECPAPRLSARLEETLRGVAVRIARDRGWCGIGTVVFSLDVGTGMFRMIEARLCGLQQGEPAADAASGGHALEVRISACADSGRRGAHLLTYGATRGEALRRAYQALAKLPGLAQADRAFLMDRIASPAFCSGLTGSQLDRIAS
>CP025069.1|AZW42740.1|835203_836586_-|phosphomannomutase/phosphoglucomutase
MAHPFPASVYKAYDIRGSVPDQLDPVFARALGRALAASARAQGIGALVVGRDGRLSSPDLAGALQEGIMEGGVDTLDIGQVPTPLVYFAAHTQGTGSGVAVTGSHNPPQYNGFKMMMGGHALYGPAVQALRPAMLAPAPAPGTWGERRQLDVVPAYVERIVSDVKLARPMKIAIDCGNGVAGALAPQLFRALGCDVDELYCEVDGTFPNHHPDPAEPRNLQDLIAHVTGTDCELGLAFDGDGDRLGVVTKSGQIIWPDRQLILFARDVLARCPGATIIYDVKCSRHVGVAIEQSGGVPLMWQTGHSLVKAKLAETGAPLAGEMSGHIFFKERWYGFDDGLYTGARLLEIVSREADASRPLEALPQALSTPELKLEMAEGEPHALIAALQQQGEFASASRLVTIDGVRAEYPDGFGLARASNTTPVVVLRFEAETEPGLARIQQEFRQQLLRLAPQAKLPF
>CP025069.1|AZW42739.1|833630_835196_-|glucose-6-phosphate-isomerase
MPTPLPSSSAWLAFADAARHSSRRGARLRIIEAAGLRVDLTAQAHSDDLDSAAEDLLAQQDFDNARAQLFDGGQANWTEHRPAWHTALRAARPPAPVAGAILGERDRLRRFVQDADMRGAYRHVLHLGIGGSDWGPRMVTRALRHNGLKREVRFASNVDSHAVADALHHLDPHDTLIIVASKSFTTTEPLANAEVAMNWLRNAGVADPVRQVVAITANVDAALDFGISPQHIFRFWDWVGGRYSLWSAIGLPVALALGCDALDELLAGAAAMDQHFLHTPMRRNAPLQMALAGVANRSVLGYGSLAITPYDSRLTHLVPWAQQLEMESLGKVAGHDGSPAGVPTGPVVWGMTGTDCQHTFFQWLHQDTAGAPVDFIVCEQADHPYDHFHKLLIANCLAQRAALLRGKPFDEALKEARLVESDPQQAEILAHHRVHPGGRPSTLVMLPRLSAHALGALLAMYEHKVFAQGVLWGINPFDQWGVEYGKALARNIIRELENPSSEVNQQDPSTRYWIDALRKQP
>CP025069.1|AZW42738.1|832492_833623_+|glycosyltransferase-family-1-protein
MTPPRRLLFVVNNPAFFLSHRLPLAEAARADGYEVHVATMDGPSVPDIVARGFTHHAIPMTRSGKQPLQELRSVWALARLFRRLRPGLVHLVTIKPVLYGGIAARLAGVPAMVAAISGLGFVFVAGGLKGRLLRAAVGRLYRLALGHRNSRIVFQNTADRDVPARLGAVRAEQVVMIRGSGVDLGQYRVVPEPAAPVTALMAARLLRDKGVREFVEAARLLRERGLAVRMQLAGGVDPGNPASITPEQAAQWRDEGCVEMLGERKDVAALYGAAHMAVLPSYREGLPKSLLEAAACGRAVVTTDVPGCRDAIDPGVTGLLVPPRDAPALAEAIARLAEDASLRQRMGAAGRALAEREFGIEDVCRRHLAIYRALTR
>CP025069.1|AZW42737.1|831341_832496_+|glycosyl-transferase
MTRILRVMHVITGLGQGGAESVLFRLAAWPDQRVRHSVISLTDEGVYGTRLRAAGVPVHALGMPRGRVTLAGMLALRALLRRERPDAVQTWMYHADLIGGVAARLAGIRAVAWGIRNSGEHLDRSSRSARLVLKLCARLSARLPAAIVCAAQDAATRHRQHGYDGARMVVIPNGYDLSRYAPDAQARERVRALWGVAPDTPLVGCVARWDPLKDHANLLAALGGLVREGRDRGLQCALVGRGMSPGNEGLAALIDAEGLRGRVLLAGPSDDVPAVMNALDLHVLSSCAEGFPNVVAEAMACGTPSVATDVGDAAYIIGDTGRVAPAQQPAALAAAIAAALAEIAAHGREAAGAAGRQRVLAEFDLRRMVESYEAVWRRISGERA
>CP025069.1|AZW42736.1|830223_831345_+|glycosyltransferase-family-4-protein
MKILLLVSSMHAGGAERVAATLANGWAARGDQVTLMPTYSSKGTCFYPLSDDVELLWLADRAGTRSGGVVAAWQRLRALRAVVRERAPDVVVSFLTNVNVAAILATRGLKTPLIVCERTNPVVDTSIGRVWRLLRRVLYPLADMVTVQADATVEPFARQVPGLKQLCVIPNPLPPELFDAAPATGSGAAPAVRKRLMAMGRMVPDKRFDLLIDAYAGLADEFPDWDLWIWGEGPLRDDLQAQVAARGLATRIHMPGRTTAPWDELAKADAFVLSSAVEGFPNVLLEAMSLGLPCAAFDCPSGPAEMTRGGRDALLVPAGQRDALRDALGRLMRDPGLRRDLGRRAAQSVRQRYALPAVLAQWDALFERVRGGA
>CP025069.1|AZW42746.1|843267_844581_-|fumarylacetoacetase
MSKLNETHDPALQSWVASANAADTSFPIQNLPYAAFRRKGTQEPFRPGVAIGEAIVDLAALAAQAPFDGAAAAALAACQGERLNALMALDQAHWSALRLALSRALRAGSALQARIEPLLVAQAEAEYTTPAHIGDYTDFYISVHHATAVGKQFRPDNPLLPNYKWVPIGYHGRASSIGVDQRFARPVGQTRPAAEGQAPQFGPCQRLDYELELGIFVGRGNAQGERIALGEAESHVFGLCILNDWSARDIQAWEYQPLGPFLAKNFASTISPWIVTLEALEPFRTAWTRDAADPQPLPYLESAENRAHGAFDVQMEVLISTEQSRAKQAQPALLSRSNFRDAYWNVAQLVAHHTVNGCNLQPGDMMGTGTLSGPQASEAGSLLELTNGGKQPLDLPWGEQRTFLQDGDQIIMRAECSKPGYPRIGFGDCVGTVLAAK
>CP025069.1|AZW42747.1|844687_845986_-|homogentisate-1,2-dioxygenase
MSLQYQTGFGNACATEALPGALPAGRNSPQICPYGLYAEQLSGTAFTAPRAENRRSWLYRIRPGVQHLPFAPFAGAQRWLSDFGRQPVTPNQLRWSPLPMPDAPTDFIDGMHTWGGNGSPEEQGGVGIHLYAANRSMQGRFFYNADGEMLIVPQQGRLRLATEMGLIDIEPYEIAVVPRGVRLRVELLDDVARGYVLENFGTAMRLPELGPIGSNCLANARDFQIPVAWYEDVEGDFELIAKFTGGFWRAPITHSPLNVVAWHGTHAPYKYDLRNFNTVGSISYDHPDPSIFTVLTSPSDTPGTANMDFAIFPPRILAMENTFRPPWFHRNIASEFMGLIHGVYDAKAEGFAPGGASLHNCMSGHGPDADTFEKASHADTSQAHYIRDTMAFMFETRRVIRPTAQALASPQRQDDYYQCWQGLQKHFNPEQA
>CP025069.1|AZW42748.1|846168_847077_+|LysR-family-transcriptional-regulator
MAELRNIDLNLLVIFQRLLQERSISAVARQLDLSQPAVSNALRRLRAACGDDLFVRTAQGMQPTPHAERLGGPVGEALALLSHALDATQDFDPRASTRRFRIAMSDVGEIHFMPRLMDQCARHAPGVRIDSLRLQGADLQREMDAGRVDLAIGAFADLGGAVMQRMLFRQGYATLYRQGHPSAHEGMGLKAFRAAHHLVVSHATPYGQVNQSLERAGVTLGEHFSVPHFAAVPYIVSTTDLLATVPQKLAASAAPHFGLGLLTPPLRMPTLQTNLYWHRRFQRDSGSQWLRALIVQAFADAP
>CP025069.1|AZW42749.1|847086_847296_-|DUF2783-domain-containing-protein
MPLITTPNLAGPDNFYEALIDTHRDLSDEQSRELNAALILLLANHIGDMAVLREALQQARQSVVAPPAA
>CP025069.1|AZW42750.1|847307_848987_-|FAD-dependent-oxidoreductase
MGDIDYQAIEFAYTKCADQERDTPARHGVIVVGAGPVGLTTALDLARQGLRVVVLDDDYRLSTGSRAICFAKRTLEIWDRLGVGQRMVDKGVSWNVGKVFFRDQEVWRFDLLPEPGHRRPAFINLQQYYAEGYLHELASAQPGIELRWKSKVVGVAQQADGVQVTVDTPDGAYALHADWLVACDGARSPVRKLLDLETHGRVFKDRFLIADVKMAADYPAERWFWFDPPFHPNQSVLLHMQPDNVWRIDFQLGWNADPVEAVKPENVLPRIRALLGPDADFELEWVSVYTFACERMDHFRHGRVVFAGDSAHRVSPFGARGANSGVQDAENLAWKLRLVLAGHAPESLIDSYAAEREYAADENILNSSRSTDFITPKSEVSRTFRNAVLNLARQHPFARTLVNSGRLSVPAAYADSPLNTPDSDPFAGTMRPGAVALDAPVRADAQPGWWLSQLDGGFALALFCGAETPRADMLDALRALQQDEVPVQPILVCDAGAAPAAAPAGVRVVEDSEGWLARRYDARPGTCYLIRPDQHIAARFRAFDAQAVRRALARAIGRA
>CP025069.1|AZW42751.1|849088_850042_-|MBL-fold-metallo-hydrolase
MSKQFASHADLEDKVVSFEKLSDNAYAYTAEGDPNTGIIVGDDAVMVVDTQATPVMAQDVIRRVREVTDKPIKYILLSHYHAVRVFGASAYGAQEILASRDTYDLIAERGEQDKASEIGRFPRLFRNVESIPPGLVWPTMTFKGEMTVDLGNLEVRLLQVGRGHTKGDTIAWLPEQKILFAGDLVEYQSTPYCGDCYFREWPATLDALAGFAAEKMVPGRGPALKSAAEVRQGLAGTRAFLTDLYAAVNRGVADGKDLKTIYREVYDFMKPRYSQWVIFDHCMPFNVSRAYDEATGYNDPRIWTDKRDIEMWKQLEG
>CP025069.1|AZW42752.1|850131_850959_-|bifunctional-DNA-formamidopyrimidine-glycosylase/DNA-(apurinic-or-apyrimidinic-site)-lyase
MPELPEVETTRRGIDTVITGRTLRRLVVREARMRWPIPPALPDLLAGRTVLECGRRGKYLLLRFDHGVQIVHLGMSGSLRRVPEQEAPRKHDHVDWVFDHAILRLHDPRRFGAVLWHPGEAGPVAAHPLLARLGIEPFDPRFDGRWLHAYFRGRRVAIKQALLAGDAVVGVGNIYASESLFRAGIDPRTAAQRVSAARCDRLAAAIRATLSDALESGGSTLRDYVGASGEPGAYFAIHAAVYERAGLPCRVCGTPIRRLVQGQRATYFCPNCQKR
>CP025069.1|AZW42753.1|850957_852844_+|hypothetical-protein
MSQCKIINCVYEDCAINRTGRVKLSLKHINFGVAALALALAGLQSLPAQAAEVRPRDATGPRLIQPSKQPETEVIRLRPGQLPYVSLTADIFYRIVGAELAAQRGMYGTAAATLVTLARETGDPRLARRGLEFQLAGGNLPGALDAARAWSSLAPNDIEASSTELALAAANGETAGLAAALRKRIDTARDKPAAIVQAMGVLSRLNDRRLALRILDESLSDSARKLPAAHLALADVAQAAGDYPRAASEAYAALAADPRSEAAAQRVLEYGAKVDATRAQHQARAFISRNPDARKLRLMLAGQIADGGDYDGALAELQSMARRSPEDFDLMFMQAQLAYKAGRLDQARGYLQQYLDVQNQRQMATAPGATDAGAAAADAHVLLSRIAEDQGRYDEAIRELGRIDDPAMRYSAHMRQATLRARQGRIDDALAMVDRADPQDDEERTLGVLTKAQILRDADQVDRAVAILVAADKAMPDTVEIKYELAMLYERQGRIDQLERLLREVIALDPDHAHAYNALGYTLADRNQRLPEALDLITQALELSPEDPFILDSMGWVKFRMGEPAAAIEYLKRAYALRPEADIAAHLAEVLWVQGERDSATELLRTAYAKDPKNHALLDTMRRLEVRP
>CP025069.1|AZW42754.1|852840_853440_+|lipoprotein-localization-protein-LolB
MSACPAPRLPVRWLHAFTLLLLLAVLAGCVSVPKPMAGAGEDAFSRVGRFAITVTESDGRQQAVQGGFAWRDDGGSYLLDLTNPLGSTEARVEGRPGMAVLTRANGERLAAEHPDALAEDALGSPVPVTGLRDWLRGRLMAGAAPDGLQRDAQGRPTAFEQDGWSARLSRYDAQGPQLLVLQRQEPGRRILVRLVITQP
>CP025069.1|AZW42755.1|853487_854387_+|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MTLYDVPAPAKLNLFLHVVGRRADGYHLLQTVFRFIDLADTLHFEARADGAIGRAYELPGVAESDDLVVRAARSLQQATGTRQGAQIGLRKRIPQGGGLGGGSSDAATTLIALNRLWGTGLSRSQLMRLALPLGADVPVFVFGQSAFAQGVGEDLTAVALPPAAYLVVQPDAGVPTAAVFSDPDLTRDSASVTIADFLALPTSCFGRNDLEPVVLRRYPEVSGSVRWLVEHGLRVRMSGSGACLFAEFPTLPEAVLAQEEITATMRVAGKTTSLTHPGFRLVQASTGLTEHPLRNWIAS

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Crispr_ID: CP025069_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025069_2

1137956-1138048

Orphan

Consensus_repeat	Method
CAGGCACCCGCGGCATGCAGCCTGCTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025069_2

>merge|CP025069|2|1137956-1138048|CRISPRCasFinder
CAGGCACCCGCGGCATGCAGCCTGCTGCTTGCCGCGGCCCGCGTGGCGGGAGCCAGACACCCTCTCCAGGCACCCGCCGCATGCAGCCTGCTG

>CP025069|2|2|1137956-1138048|CRISPRCasFinder
CAGGCACCCGCGGCATGCAGCCTGCTG	CTTGCCGCGGCCCGCGTGGCGGGAGCCAGACACCCTCTC
CAGGCACCCGCCGCATGCAGCCTGCTG

Protein	Signature genes	Signature genes Name	Protein_function
CP025069.1\|AZW43007.1\|1135409_1136033_+\|flavin-reductase-family-protein	unknown	unknown	gnl\|CDD\|224766
CP025069.1\|AZW43005.1\|1131210_1133319_+\|CoA-binding-protein	unknown	unknown	gnl\|CDD\|223972
CP025069.1\|AZW43006.1\|1133373_1134348_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270234
CP025069.1\|AZW43018.1\|1146973_1147435_+\|Lrp/AsnC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224439
CP025069.1\|AZW43014.1\|1142453_1143425_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
CP025069.1\|AZW43004.1\|1130198_1130951_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|235546
CP025069.1\|AZW43003.1\|1129002_1130169_-\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173847
CP025069.1\|AZW43010.1\|1139033_1139729_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|293786
CP025069.1\|AZW43001.1\|1127706_1128483_-\|citryl-CoA-lyase	unknown	unknown	gnl\|CDD\|235748
CP025069.1\|AZW46483.1\|1134359_1135409_+\|CoA-transferase	unknown	unknown	gnl\|CDD\|367110
CP025069.1\|AZW43015.1\|1143463_1144837_+\|amidase	unknown	unknown	gnl\|CDD\|223232
CP025069.1\|AZW43017.1\|1145885_1146875_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
CP025069.1\|AZW43012.1\|1140218_1141451_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340968
CP025069.1\|AZW43008.1\|1136047_1137799_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173842
CP025069.1\|AZW43002.1\|1128484_1129006_-\|acyl-dehydratase	unknown	unknown	gnl\|CDD\|239530
CP025069.1\|AZW43016.1\|1144874_1145576_-\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
CP025069.1\|AZW43000.1\|1126837_1127578_-\|IclR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224332
CP025069.1\|AZW43011.1\|1139718_1140222_+\|nucleoside-deaminase	unknown	unknown	gnl\|CDD\|223663
CP025069.1\|AZW43013.1\|1141398_1142301_-\|transcriptional-regulator-GcvA	unknown	unknown	gnl\|CDD\|182990
CP025069.1\|AZW43009.1\|1138093_1138963_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|237907

Protein	Function_ID	Function_description	E-value
CP025069.1\|AZW43007.1\|1135409_1136033_+\|flavin-reductase-family-protein	gnl\|CDD\|224766	COG1853, COG1853, Conserved protein/domain typically associated with flavoprotein oxygenases, DIM6/NTAB family [General function prediction only].	1.25976e-31
CP025069.1\|AZW43005.1\|1131210_1133319_+\|CoA-binding-protein	gnl\|CDD\|223972	COG1042, COG1042, Acyl-CoA synthetase (NDP forming) [Energy production and conversion].	9.06276e-120
CP025069.1\|AZW43006.1\|1133373_1134348_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270234	cd07012, PBP2_Bug_TTT, Bug (Bordetella uptake gene) protein family of periplasmic solute-binding receptors; contains the type 2 periplasmic binding fold. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) proteins present in a number of bacterial species, but mainly in proteobacteria. In eubacteria, at least three families of periplasmic binding-protein dependent transporters are known: the ATP-binding cassette (ABC) transporters, the tripartite ATP-independent periplasmic transporters, and the tripartite tricarboxylate transporters (TTT). Bug proteins are the PBP components of the TTT. Their expansive expansion in proteobacteria indicates a large functional diversity. The best studied examples are Bordetella pertussis BugD, which is an aspartic acid transporter, and BugE, which is glutamate transporter.	9.79009e-121
CP025069.1\|AZW43018.1\|1146973_1147435_+\|Lrp/AsnC-family-transcriptional-regulator	gnl\|CDD\|224439	COG1522, Lrp, Transcriptional regulators [Transcription].	6.17932e-44
CP025069.1\|AZW43014.1\|1142453_1143425_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	3.99161e-136
CP025069.1\|AZW43004.1\|1130198_1130951_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|235546	PRK05653, fabG, 3-oxoacyl-ACP reductase FabG.	1.02972e-101
CP025069.1\|AZW43003.1\|1129002_1130169_-\|acyl-CoA-dehydrogenase	gnl\|CDD\|173847	cd01158, SCAD_SBCAD, Short chain acyl-CoA dehydrogenases and eukaryotic short/branched chain acyl-CoA dehydrogenases. Short chain acyl-CoA dehydrogenase (SCAD). SCAD is a mitochondrial beta-oxidation enzyme. It catalyzes the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of SCAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. This subgroup also contains the eukaryotic short/branched chain acyl-CoA dehydrogenase(SBCAD), the bacterial butyryl-CoA dehydorgenase(BCAD) and 2-methylbutyryl-CoA dehydrogenase, which is involved in isoleucine catabolism. These enzymes are homotetramers.	9.88796e-111
CP025069.1\|AZW43010.1\|1139033_1139729_+\|hypothetical-protein	gnl\|CDD\|293786	sd00045, ANK, ankyrin repeats. Ankyrin repeats are one of the most abundant repeat motifs, and generally function as scaffolds for protein-protein interactions in processes including cell cycle, transcriptional regulation, signal transduction, vesicular trafficking, and inflammatory response. Although predominantly found in eukaryotic proteins, they are also found in some bacterial and viral proteins. Less is known of their physiological roles in prokaryotes. Some bacterial ANK proteins play key roles in microbial pathogenesis by mimicking or manipulating host function(s). The pathogen Providencia alcalifaciens N-formyltransferase ankyrin repeats function in small molecule binding and allosteric control. Ankyrin-repeat proteins have been associated with a number of human diseases.	2.25503e-19
CP025069.1\|AZW43001.1\|1127706_1128483_-\|citryl-CoA-lyase	gnl\|CDD\|235748	PRK06224, PRK06224, citryl-CoA lyase.	2.59617e-109
CP025069.1\|AZW46483.1\|1134359_1135409_+\|CoA-transferase	gnl\|CDD\|367110	pfam02515, CoA_transf_3, CoA-transferase family III. CoA-transferases are found in organisms from all lines of descent. Most of these enzymes belong to two well-known enzyme families, but recent work on unusual biochemical pathways of anaerobic bacteria has revealed the existence of a third family of CoA-transferases. The members of this enzyme family differ in sequence and reaction mechanism from CoA-transferases of the other families. Currently known enzymes of the new family are a formyl-CoA: oxalate CoA-transferase, a succinyl-CoA: (R)-benzylsuccinate CoA-transferase, an (E)-cinnamoyl-CoA: (R)-phenyllactate CoA-transferase, and a butyrobetainyl-CoA: (R)-carnitine CoA-transferase. In addition, a large number of proteins of unknown or differently annotated function from Bacteria, Archaea and Eukarya apparently belong to this enzyme family. Properties and reaction mechanisms of the CoA-transferases of family III are described and compared to those of the previously known CoA-transferases.	2.02789e-93
CP025069.1\|AZW43015.1\|1143463_1144837_+\|amidase	gnl\|CDD\|223232	COG0154, GatA, Asp-tRNAAsn/Glu-tRNAGln amidotransferase A subunit and related amidases [Translation, ribosomal structure and biogenesis].	3.24953e-79
CP025069.1\|AZW43017.1\|1145885_1146875_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	3.75849e-150
CP025069.1\|AZW43012.1\|1140218_1141451_+\|MFS-transporter	gnl\|CDD\|340968	cd17410, MFS_CynX_like, Cyanate transport protein CynX and similar proteins of the Major Facilitator Superfamily of transporters. This subfamily is composed of Escherichia coli cyanate transport protein CynX and similar proteins. CynX is part of an active transport system that transports exogenous cyanate into E. coli cells. The gene encoding CynX is part of the cyn operon that also includes cynS, encoding cynase, which catalyzes the reaction of cyanate with bicarbonate to give ammonia and carbon dioxide, and cynT, which encodes a carbonic anhydrase. The CynX-like subfamily belongs to the 2-nitroimidazole and cyanate transporters like (NIMT/CynX-like) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	3.7743e-95
CP025069.1\|AZW43008.1\|1136047_1137799_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173842	cd01153, ACAD_fadE5, Putative acyl-CoA dehydrogenases similar to fadE5. Putative acyl-CoA dehydrogenase (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha,beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	2.32174e-141
CP025069.1\|AZW43002.1\|1128484_1129006_-\|acyl-dehydratase	gnl\|CDD\|239530	cd03446, MaoC_like, MoaC_like Similar to the MaoC (monoamine oxidase C) dehydratase regulatory protein but without the N-terminal PutA domain. This protein family has a hot-dog fold similar to that of (R)-specific enoyl-CoA hydratase, the peroxisomal Hydratase-Dehydrogenase-Epimerase (HDE) protein, and the fatty acid synthase beta subunit.	5.90508e-45
CP025069.1\|AZW43016.1\|1144874_1145576_-\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	9.30426e-109
CP025069.1\|AZW43000.1\|1126837_1127578_-\|IclR-family-transcriptional-regulator	gnl\|CDD\|224332	COG1414, IclR, Transcriptional regulator [Transcription].	8.31105e-43
CP025069.1\|AZW43011.1\|1139718_1140222_+\|nucleoside-deaminase	gnl\|CDD\|223663	COG0590, CumB, Cytosine/adenosine deaminases [Nucleotide transport and metabolism / Translation, ribosomal structure and biogenesis].	5.46481e-36
CP025069.1\|AZW43013.1\|1141398_1142301_-\|transcriptional-regulator-GcvA	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	2.85654e-93
CP025069.1\|AZW43009.1\|1138093_1138963_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|237907	PRK15092, PRK15092, DNA-binding transcriptional repressor LrhA; Provisional.	2.65005e-43

>CP025069.1|AZW43008.1|1136047_1137799_+|acyl-CoA-dehydrogenase
MSQYRAPWGDIEFLLEHVFARDGQAALDLDLARSVAHEAGKFAQAFLEPVNRRGDQAGARLEQGAVVTPPGFARAYAAFCEAGWNGLRHPERFGGQGLSAVLSTLTEEIWHACNASFALCPMLTGGAIEALLAAADPVLQARLLPRLVSGEWTGTMNLTEPGAGSDLGAVKTRAVARGDGTYAITGQKIFITYGDHDMAANIIHLVLARIPDAPAGVKGLSLFAVPRHLLRDDGSPGEPNRVACVALEHKLGIHGSPTAVMQFGDDEGATGYLVGAPNDGLKTMFVMMNEARHAVGIQGLALSERAYQHAVWYAGERRQGRIVGEDGSRGDTILRHPDVRRLLLGIKSRIDAMRALAIYLALQRDQAHGGAQASPRAAAQARLDLLVPVMKGWFTETAQRATYDAMQVFGGMGYIEETGAAQYYRDARILTIYEGTTAIQANDLVGRKTVRDQGAEARRLLDEIAAAARPGLDGEGLGEALGAACADLRAAVDAILEQAGSAPRAAYAGGVPYLELWGVVAGGWMHALRARAAARLPEARRQAVLASAAFYARHVLPQAAALRQAIVQGGTQADAYPDDCWVG
>CP025069.1|AZW43007.1|1135409_1136033_+|flavin-reductase-family-protein
MDAPRTGLDAAGLSARETYRLLTSCLVPRPIAWVSTCDARGTGNLAPFSFYTMVSTVPPLIALSISLHQGQEKDTLANIRQTGEFVVNVVTRELLAPMHACGERHAPGVDEAQLLGVRMRPSQRVRPAGVALSPVRLECRLSQVLEFGVHAARLVVGEVLHFSIDSEYMRDGRLDGARLDPVCRLGGPWYGVLGERLAAPDPSTPST
>CP025069.1|AZW46483.1|1134359_1135409_+|CoA-transferase
MTRAAPLAGISVVDFSELLPGPFLTQNLLELGATVVKVERPPHGDNARRLYPGVYASVNRGKRGEMLDLKQAEGRARARELVAGADVLVEGFRPGVMARLGLDYEQARALNERLVYVSLSGYGQDGPQARQPGHDINYLAAAGALALAGSDPAEPAPGAGLPVADLCGAMYALSSTLAALLQRQHTGRGQWLDVALADCVMHWMNPRLGQFASAGLATLAQQRHDVLCKPAYGVFRTADDAHVAIAALEDHFWQALRGALPLAGLAGPLATYREREAQAGPINDALARAVRGRTCQALMEVLTAADVPVSRVELPGELGQSALARQRGLFDAGDGYARYPVRLDHMGAA
>CP025069.1|AZW43006.1|1133373_1134348_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MFNKHAFIAALAALAACIAAPAQAAEAYPERPIRFVVPFTAGGITDNVARTVGARAAELLGQPIIVENRAGAGGNIGTEYAANSKPDGYVIFLGTQGTQVTNPLLYTSAPSSADRLQAVQGLTAIPNIVVVNAERPYDTLAKVVDYARANPGKLNNSSAGAGTGTHLAAELFQSVVDVKFSHIPFKGSAPSITALIGGQVDLSFDYPVSTEAYVKAGKIRAVAVTGEARLGSLPDVPTLAELGYPQATSVSWMGVFVPAGTPDAVTARLRQAFAAAIAEPQVAAKLVEFGGVPLQKSGADFTAFVQDEAVKWGKVVKAAGVKLD
>CP025069.1|AZW43005.1|1131210_1133319_+|CoA-binding-protein
MFQNLAPLFAPESLVLIGASDRPASIGQRTLVNIVEHSRFDGELFLVNATKDEVMGRRAYRSVLDLPYAPQTAIVVVPAKAAVEVLAECGRKGVRFAIVLSSGFGETGEAGRQLEEQMRAIVRETGLRIYGPNCPGMTNNNRGLGFTFSPAYQYDRMAGPIGLVTQGGGLGRTFLQACGRGVGIGLWCSSGNEADLTASDYINHMVEMPEIKVIVALLEGINDPPRFARAALNAARQGKPIVALKVGKSAYGVQATQSHTAALSGSAEVNSAAFRQLGIVEVDDIDELIDTAALLARGAPARPIRAAVYSFSGGTVALAADMLGSAGLELSRFEPATRQALAGMLPSYAAIDNPVDTTAEILVQSDISYGSLLCVARDPNVDVVLYPIPMEYGDTTLAACRNMVKAQAEVAVPIVPVWMSDKLGAGFQCLVDAGLTPVRTLGKSVKALAHWNRYGQWMRRFERDWEPSVVKTAAADAAARSEPRAYAEREAKQMLADAGVAVPFGQVCRSADEAVRAAAQCQGPVVAKIVSAQILHKSDIGGVAVGLRTPQQVRDAWETIDANARAACPDARIDGILIEQMIGGPGVETLVGVHEDPLFGHVMTFGLGGVYVEVFKDVSRRLLPLTPQDARDMIRETRCHQLLQGCRGQAAADIEALERLLLAVSGFVVDGPWHIKELDLNPVLAGPAGATALDAVLIGAPR
>CP025069.1|AZW43004.1|1130198_1130951_-|NAD(P)-dependent-oxidoreductase
MDLKIAGKVAVVTGSGRGIGAQTVRTLAEEGARVVVTDINEETARETAARLSADGHEAIGVKCDVCRREDVDALVAAATKAYGGVDILVNNAGFTRDQYLGKMSEDDWDAVVDTIIKGAFHCSRAVLPGMMQKRWGRIVNIASRSVFGNPGQTNYTTAKLGLVGFTRALSLEQAKFGITVNAIAPGFVETELMRSLPTYERLRDGALARNPVGFLGQPGDIADAVAFIASERARYITGVTLYVTGGRFSS
>CP025069.1|AZW43003.1|1129002_1130169_-|acyl-CoA-dehydrogenase
MDFDFDSNQQALRDSIRRYLKAEVAPRIDACEAERRIPQDLLQGLAQFGYIGGLLPEDAGGFDLDFVTWAMMVEEAGYCWGSLRTIVNITNIFLRLVQGHGTTRQRERFLAPVLASEKSVCVAISEPNHGSNVAGIECRADDRGDHYLLNGSKLWITNGVNADCAIVLARTYSDTCQGKPSLFLVERAASPYAARLVDKMVLKASGTSELSFDDVRVPKENLLGAEGVALKTMLAGLNYGRLNIAMGAVGAAQAALDLSVEYAKTRRQFGRPIGEFQLIQKHIVDMMVRTEAARALGYKAAAAMQKGQPARIECSIAKLYAAEAAHEVARIALSVHGGLGYSTEYPLERIFRDTSGGIIPEGTAEVQTLIVGREVLGMSAINAAENKA
>CP025069.1|AZW43002.1|1128484_1129006_-|acyl-dehydratase
MTVIDTLPPAALEALRYDWEDLEPGLMVESAARTITESDVVSFAALSGDYNRLHTDAVYAGASKFGQRIAHGMLVASIMSGLNTRTVLNQCLEPSILGLLEMTYRFTRPTFVGDTIKVRITVTARRPSSDPGRGVVEFERLGINQHGDTVCACVAKLLVARRAPSPNSQPNEA
>CP025069.1|AZW43001.1|1127706_1128483_-|citryl-CoA-lyase
MVKTEIGYTTPERITVRGKDLANELLGQVDFVDMMLMTIFGHLPSAAEKTMVNHILVTACDHGLTPSAMSARLTYLGAPEAMQAAVAAGLLGAGSVFLGTTQNCAEILAAGGAGLAPEAPQEEVDAAARALMAASREKKQPIYGIGHPIHIDGDPRVPTLRRLARELGYYGKHWRLMEAVQRVFLQDKGKNLPMNAVGAVGAIICDMGLDPMIARGLMLVGRAGGLVAHLYEERQDPIGQQLWDLVLAQDPRNVAPAR
>CP025069.1|AZW43000.1|1126837_1127578_-|IclR-family-transcriptional-regulator
MPTFVSAAARAMAVFEVFAREKRELSNSDLARLLELPDSSCLDLLHTLHQLGYLLRTQSRRYYPTGKLLQAAQQISTFDLVVHATRDALEQLSQQTGETAYVGRIEGAAVKIVAVREGRYPLRYILNLGERIALHASAMGKALLGRLPPDEARRLLKTKQLRRLTPTTVTEPEDLLEEVLASRERGWYHTRGEGSDGADALAVSGLLSNEPIAIAISGPSDRFSANRDDYVAALRAVAARLFPDDA
>CP025069.1|AZW43009.1|1138093_1138963_-|LysR-family-transcriptional-regulator
MLDPVLLRSFVTVVDTGNFTRASEHLHLTQSTVSQHVIRLEENLGCRLLDRGQRHVLPTEEGERLLGYARSILRLADEARESVAAAQGNAVLRLGAPEDFMGAALMPVLAPLLARYPLLRLEFDSGLSHQLLRRYRDGELDLLLVKQWEVDADCQAHWPEPLRWVAARDGPTLPAGEAVPLVVFPAGALYRQEMTRTLEAGGRPWHIRYASTSLAGLVAAVGAGLGVSLLPAASAGSQLRVLRKRDGFAPVDGLQLGLYARARLGAAGRDLRDALAAHCGQRATAMAGA
>CP025069.1|AZW43010.1|1139033_1139729_+|hypothetical-protein
MFKHGGLDMSIIRFYRCWLAAFLVSLGGASVAAGDAGQALLRAAADGDAARVKTLLADGAPLEARDAQGNTPLLRATQGNHVEAAGALVEAGADVNAQNRFQDSAYLLAGARGYRDILALTLAHGADLKSTNRYGGTALIPACERGHVEVVDMLLRAGVDPDHVNRLGWTGLLEAIILGDGGTRHQAIVARLIEGGADVNLADGDGVSPLRHARQRGQAAIVQLLEAAHAR
>CP025069.1|AZW43011.1|1139718_1140222_+|nucleoside-deaminase
MRADSNPGVAAPDDDTLLREAIALARANARAGGRPFGALVARDGVVLARGVNRMLADHDPTAHAELLALREAGRALRSARLDGCVVYASGQPCPMCLAAMRMSGVARAVYAYSNEQAEPYGLSTAALAAELELPPQRQPGFAFEHRPGATGPDADLYREWRDGPHAP
>CP025069.1|AZW43012.1|1140218_1141451_+|MFS-transporter
MTAARWGAAPRAWAMLALVALIGLNLRPFLTGPGTVLAGIEADTGLGHLGASMLTVLPMLLMGVGALLAPAIQARVGTRRGVLAALLALALGSALRLAAWDGALLVGTAALCGLGVAYIQAVFPGVIKDRFPGRMAAVMGVYSAMMMGGGALGARLTSRLAGGAGDSWRVALAWLAVPALIAFAAAWRCLAETPAARRDGALAGTLMRRPRTWLLIAAFGLVNGGYSSMVAWLAPAVQAQGWSIAQSGDLMVAMTIAQAAAALALPVLAARRADRRPWLYATLSMQAAGFAGMAFWPAAAPLAWAVIGGAGLGGCFALTFIAALDHFSQAEPAGVLAALMQGGGFLIAALAPFAVAALRAATGGFAAGWAMHLACVAIACLLYRRLDPARYARVMAAEPGAAATRRAPSA
>CP025069.1|AZW43013.1|1141398_1142301_-|transcriptional-regulator-GcvA
MDGLPPLNAVRTFEVAGRLCSITEAAAELCVTPSAVSRQIRLLEEHLGRKLFVRQHRGVVLTTIGHQYLGDISKALVEVRRATSEAARPRQRAVFTVRAPHSIAMRWLLPRLARFHAAHPHIDVKLHTSLTPPDFEREDLDAGVMLGRGQWKGLVSHMLIRNELIPVCAPHKARALRDPADLADETLLHVFGRPDDWVAWLGAAGVRHVDVQRGMKYESSALAYEAALEGYGIAIAQKALIDKDLQEGRLVTPFDLSVDQGDYTYYFVLPPEGYKRRSPALDTFRRWVRDVSLPRQAPPP
>CP025069.1|AZW43014.1|1142453_1143425_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MRLACARWLLACMAPLAGAAAVAETYPARPVTIVVPTTAGGTADILARLIGPKLTALWGQPVVVENRSGAGTLIGTEFAARAQPDGYTLMITYSELATLPALNKNARIDVVKDLTRVGKIGSLPVLILAHPSMPANTMDELVARLRADPGKYTYASNGIGSALQLYTEMFRQAAKVDIMHVPYRGALEASRAVLGGEVDLLVQLGNGNVIGYVTSGKAKAYAVASPQRLAALPDVPTTAEAGLPGLQLEAWYGLFAPAGLPPEQVEKLNRDLATVLAMPEIRDRLVSFGMQVQPGTPQQFDAFFHDEYQRWTRLIEDAGIQIN
>CP025069.1|AZW43015.1|1143463_1144837_+|amidase
MNYHPSTHTPLTFHDRTQAFLDGGDSPRDYLERCLDTIARREPVVQGWVVLNEAGAREAADASARRYREGRPLSAIDGMPVGIKDLIETRDMPTQMGSPAYTGNFPKRDSAVVRALREAGAIVLGKTVTTALGFLDPGPTTNAFDPERTPGGSSSGSGAVVGANMVPVAVGSQLVGSMLRPASFNANWVLKPTYGGMNRGERQGFSQSHVGIHAGSAQDMWTTSIEIVRRVGGDPGHPGLYGEAAPPAGRKPARLAVIETEGWERLDAASRAAFEAALERIAGQGVRIVRRADCSLVDGLERAIAQAGALSMRLISWEHHWSLKNMAEQHPGTLGPSLVRQLELGQAMTLERYRHDILEREAARQRLAALATQCDALLSLASSGPAPRIADLRGTPYPTGDYSFSCVSSLLGAPAISVPALGVDGMPVGLQVIGQPHRDEQVTAIGRWLHELLAAPR
>CP025069.1|AZW43016.1|1144874_1145576_-|riboflavin-synthase
MFTGIVQGTATIAGIADRQGLRTFTIDFPAGFCVDLAIGASVSVDGVCLTVTRIVSADTATFDVMLQSLDITTLGGYAVGARVNVERAARDGAEIGGHPLSGHIDFAAAVERVRNMDNNRVLRIGIPPAFRKYVFAKGYIAVNGASLTVSEVDREEGWFEVWLIPETRRMTVFEEKQAGDALNIEIERSTQVVVDTVREAVQESLGRLQPVLEAILKEKGLSLEDFVRPPALK
>CP025069.1|AZW43017.1|1145885_1146875_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MKSIQSRLLATWAVCAAAGMLAGPAVASGAAYPSKPVTMIVSFPPGGSSDFFTRLVANNLSKMWGQPVVVENRPGAGGNIGAQAGAHAPADGYTLYMSSINTHAINPGLYQNPGYDHIKDFAPISEIATVMNVLVVNPSVPAKSVGELLAYFKADPSKAFYASPGAGTSPHLSSELFKRMTDTPITHVPYKGSNAALTDVMAGMVPMAIDNLPAALAHIKAGKLRALAVTSPKRSPDLPDVPTMDEAGVKGYDVTTWWALFAPAGTPQPIIAKINKDVNALLALPDVKQSIARQGAEPAPSTPGELAQLVEKETARWGKVIKDAKVTID
>CP025069.1|AZW43018.1|1146973_1147435_+|Lrp/AsnC-family-transcriptional-regulator
MDATDRKIIAILQENAETPIQSIADQVSLSTTPCWRRVQKLKESGVIRRQVALCDPVALNVGVTVFISVKTNQHSQAWLDRFADHVTDIPEVVEFYRMSGDIDYLIRVVVPDISTYDTVYKKLIRIADLHDVSSSFAMEQLKYTTALPVDYAS

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Crispr_ID: CP025069_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025069_3

1332139-1332225

Orphan

Consensus_repeat	Method
TCGGTGCCTGTCCCCGCGGGGACAGGCACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025069_3

>merge|CP025069|3|1332139-1332225|CRISPRCasFinder
TCGGTGCCTGTCCCCGCGGGGACAGGCACCCGGGGAAGTGGCAGGCGTGACGGTGGTTCGGTGCCTGTCCCCACGGGGACAGGCACC

>CP025069|3|3|1332139-1332225|CRISPRCasFinder
TCGGTGCCTGTCCCCGCGGGGACAGGCACC	CGGGGAAGTGGCAGGCGTGACGGTGGT
TCGGTGCCTGTCCCCACGGGGACAGGCACC

Protein	Signature genes	Signature genes Name	Protein_function
CP025069.1\|AZW43182.1\|1334074_1336759_+\|aconitate-hydratase-AcnA	unknown	unknown	gnl\|CDD\|236445
CP025069.1\|AZW43176.1\|1328338_1329214_-\|hypothetical-protein	unknown	unknown	unknown
CP025069.1\|AZW43179.1\|1331055_1331361_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
CP025069.1\|AZW43189.1\|1343923_1344919_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270296
CP025069.1\|AZW43171.1\|1321178_1324619_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377502
CP025069.1\|AZW43190.1\|1344951_1346337_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377179
CP025069.1\|AZW43186.1\|1340058_1341078_+\|LacI-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|270296
CP025069.1\|AZW43188.1\|1342478_1343855_+\|MmgE/PrpD-family-protein	unknown	unknown	gnl\|CDD\|377179
CP025069.1\|AZW43183.1\|1336783_1338157_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|238627
CP025069.1\|AZW43177.1\|1329210_1330218_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|273075
CP025069.1\|AZW43172.1\|1324615_1325521_+\|dienelactone-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223489
CP025069.1\|AZW43180.1\|1331484_1332075_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP025069.1\|AZW43187.1\|1341096_1342482_+\|FAD-binding-protein	unknown	unknown	gnl\|CDD\|273816
CP025069.1\|AZW43181.1\|1332980_1333874_-\|carboxyvinyl-carboxyphosphonate-phosphorylmutase	unknown	unknown	gnl\|CDD\|119340
CP025069.1\|AZW43175.1\|1326712_1328179_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341030
CP025069.1\|AZW43174.1\|1326197_1326701_+\|peroxiredoxin	unknown	unknown	gnl\|CDD\|239311
CP025069.1\|AZW43173.1\|1325529_1325961_-\|hypothetical-protein	unknown	unknown	unknown
CP025069.1\|AZW43178.1\|1330686_1330992_+\|DUF4148-domain-containing-protein	unknown	unknown	gnl\|CDD\|379321
CP025069.1\|AZW43184.1\|1338189_1338909_+\|hydrolase	unknown	unknown	gnl\|CDD\|238497
CP025069.1\|AZW43185.1\|1338919_1339921_+\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597

Protein	Function_ID	Function_description	E-value
CP025069.1\|AZW43182.1\|1334074_1336759_+\|aconitate-hydratase-AcnA	gnl\|CDD\|236445	PRK09277, PRK09277, aconitate hydratase AcnA.	0
CP025069.1\|AZW43179.1\|1331055_1331361_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	0.000241234
CP025069.1\|AZW43189.1\|1343923_1344919_+\|tripartite-tricarboxylate-transporter-substrate-binding-protein	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	2.4627e-151
CP025069.1\|AZW43171.1\|1321178_1324619_+\|hypothetical-protein	gnl\|CDD\|377502	pfam05359, DUF748, Domain of Unknown Function (DUF748).	1.73228e-36
CP025069.1\|AZW43190.1\|1344951_1346337_-\|hypothetical-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	2.59337e-63
CP025069.1\|AZW43186.1\|1340058_1341078_+\|LacI-family-transcriptional-regulator	gnl\|CDD\|270296	cd13578, PBP2_Bug27, Aromatic solutes transporter of Bug (Bordetella uptake gene) protein family; contains the type 2 periplasmic binding fold. Bug27 binds non-carboxylated solute nicotinamide, in contrast to BugD (aspartic acid transporter) and BugE (glutamate transporter) which both bind aliphatic carboxylated ligands. The Bug (Bordetella uptake gene) protein family is a large family of periplasmic solute-binding (PBP) receptors present in a number of bacterial species, but mainly in proteobacteria. Bug proteins are the PBP components of the tripartite carboxylate transporters (TTT). Their expansive expansion in proteobacteria indicates a large functional diversity.	5.31641e-115
CP025069.1\|AZW43188.1\|1342478_1343855_+\|MmgE/PrpD-family-protein	gnl\|CDD\|377179	pfam03972, MmgE_PrpD, MmgE/PrpD family. This family includes 2-methylcitrate dehydratase EC:4.2.1.79 (PrpD) that is required for propionate catabolism. It catalyzes the third step of the 2-methylcitric acid cycle.	4.33833e-94
CP025069.1\|AZW43183.1\|1336783_1338157_+\|dihydroorotase	gnl\|CDD\|238627	cd01302, Cyclic_amidohydrolases, Cyclic amidohydrolases, including hydantoinase, dihydropyrimidinase, allantoinase, and dihydroorotase, are involved in the metabolism of pyrimidines and purines, sharing the property of hydrolyzing the cyclic amide bond of each substrate to the corresponding N-carbamyl amino acids. Allantoinases catalyze the degradation of purines, while dihydropyrimidinases and hydantoinases, a microbial counterpart of dihydropyrimidinase, are involved in pyrimidine degradation. Dihydroorotase participates in the de novo synthesis of pyrimidines.	5.85914e-141
CP025069.1\|AZW43177.1\|1329210_1330218_-\|biotin-synthase-BioB	gnl\|CDD\|273075	TIGR00433, biotin_synthase, biotin synthase. Catalyzes the last step of the biotin biosynthesis pathway. All members of the seed alignment are in the immediate gene neighborhood of a bioA gene. [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin].	1.16834e-174
CP025069.1\|AZW43172.1\|1324615_1325521_+\|dienelactone-hydrolase-family-protein	gnl\|CDD\|223489	COG0412, COG0412, Dienelactone hydrolase and related enzymes [Secondary metabolites biosynthesis, transport, and catabolism].	3.68512e-65
CP025069.1\|AZW43180.1\|1331484_1332075_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	3.59284e-12
CP025069.1\|AZW43187.1\|1341096_1342482_+\|FAD-binding-protein	gnl\|CDD\|273816	TIGR01813, Fumarate_reductase_flavoprotein_subunit, flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton. [Energy metabolism, Electron transport].	1.39056e-56
CP025069.1\|AZW43181.1\|1332980_1333874_-\|carboxyvinyl-carboxyphosphonate-phosphorylmutase	gnl\|CDD\|119340	cd00377, ICL_PEPM, Members of the ICL/PEPM enzyme family catalyze either P-C or C-C bond formation/cleavage. Known members are phosphoenolpyruvate mutase (PEPM), phosphonopyruvate hydrolase (PPH), carboxyPEP mutase (CPEP mutase), oxaloacetate hydrolase (OAH), isocitrate lyase (ICL), and 2-methylisocitrate lyase (MICL). Isocitrate lyase (ICL) catalyzes the conversion of isocitrate to succinate and glyoxylate, the first committed step in the glyoxylate pathway. This carbon-conserving pathway is present in most prokaryotes, lower eukaryotes and plants, but has not been observed in vertebrates. PEP mutase (PEPM) turns phosphoenolpyruvate (PEP) into phosphonopyruvate (P-pyr), an important intermediate in the formation of organophosphonates, which function as antibiotics or play a role in pathogenesis or signaling. P-pyr can be hydrolyzed by phosphonopyruvate hydrolase (PPH) to from pyruvate and phosphate. Oxaloacetate acetylhydrolase (OAH) catalyzes the hydrolytic cleavage of oxaloacetate to form acetate and oxalate, an important pathway to produce oxalate in filamentous fungi. 2-methylisocitrate lyase (MICL) cleaves 2-methylisocitrate to pyruvate and succinate, part of the methylcitrate cycle for the alpha-oxidation of propionate.	1.99842e-95
CP025069.1\|AZW43175.1\|1326712_1328179_+\|MFS-transporter	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.87185e-93
CP025069.1\|AZW43174.1\|1326197_1326701_+\|peroxiredoxin	gnl\|CDD\|239311	cd03013, PRX5_like, Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases, it is assumed that the oxidized cysteine is directly resolved by an external small-molecule or protein reductant, typical of a 1-cys PRX. In the case of the H. influenza PRX5 hybrid, the resolving glutaredoxin domain is on the same protein chain as PRX. PRX5 homodimers show an A-type interface, similar to atypical 2-cys PRXs.	1.07728e-77
CP025069.1\|AZW43178.1\|1330686_1330992_+\|DUF4148-domain-containing-protein	gnl\|CDD\|379321	pfam13663, DUF4148, Domain of unknown function (DUF4148).	0.000248775
CP025069.1\|AZW43184.1\|1338189_1338909_+\|hydrolase	gnl\|CDD\|238497	cd01015, CSHase, N-carbamoylsarcosine amidohydrolase (CSHase) hydrolyzes N-carbamoylsarcosine to sarcosine, carbon dioxide and ammonia. CSHase is involved in one of the two alternative pathways for creatinine degradation to glycine in microorganisms.This CSHase-containing pathway degrades creatinine via N-methylhydantoin N-carbamoylsarcosine and sarcosine to glycine. Enzymes of this pathway are used in the diagnosis for renal disfunction, for determining creatinine levels in urine and serum.	9.01286e-40
CP025069.1\|AZW43185.1\|1338919_1339921_+\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	1.17813e-65

>CP025069.1|AZW43180.1|1331484_1332075_+|TetR/AcrR-family-transcriptional-regulator
MDTPSTNSTRDQLLDYAQKLIRTRGCNGFSYRDLADHVGVKTSSVHYYFPCKDDLLYEAVENYTGSALETLRGISPTLPAKERLDAYIAMVESHSCQADQLCLGGMLAAELNTLPERVRAALQAFFTVEENWLANVLADGAREGTLRYASTPEKAARALFATVQGCLLGARLFQRPPDLREALGALYVQCGESPAH
>CP025069.1|AZW43179.1|1331055_1331361_+|DUF4148-domain-containing-protein
MNRIATALILSASVFGVAQAGELDYPPAIESAGTLSHAQVQAELQAARTQGLMAAGEQDYPVTAYAAASAVSREQVRNELAAARAQGLTESGELAYPPVAG
>CP025069.1|AZW43178.1|1330686_1330992_+|DUF4148-domain-containing-protein
MNRIATALILSASVFGAAQAGELDYPPAIESASTLSHAQVQDELLAARAAGQMNSAELAYPPVVEQAAAQVSRSQIRQELSAAKAQGLDASGELDYPPVAG
>CP025069.1|AZW43177.1|1329210_1330218_-|biotin-synthase-BioB
MHTAYIPVPTPVRPPSAERWPLAAVAELFELPFLDLLHRAQQVHRQHFDANTVQLSSLLSIKTGGCPEDCAYCPQSAHYDTGVDADKLMPLDEVVRAARAAQANGAQRFCMGAAWRSPKPHHLEAVAEMIGAVKALGMETCVTLGMLRDGQAGQLKAAGLDYYNHNLDTAPEFYGKIISTRTYQDRLDTLQQVREAGINVCCGGIVGMGESRRDRAGLVAQLANMEPYPESVPINNLVQVEGTPLAGAETLDPFEFIRTIAVARITMPLAKVRLSAGRETMSDSEQALCFMAGANSIFYGDVLLTTGNPQVEADRRLLQRLGMRAEGLPCAAGQA
>CP025069.1|AZW43176.1|1328338_1329214_-|hypothetical-protein
MNQGLLYLAASVACSVTVAVLLKLARRHAIDVRQAIAVNYAVAAALCWLLLRPDAQALRQAMQGAPVLAALAVLLPTVFVAMARSVRHAGIVKSDAAQRLSLFIPLLAAFVLFGESLTARKLAAIALAFAALACLLRRRAPAGAAMQDAPEDRRAAWMWPLAVWAGYGVIDILFKQLARSGTAFSAGLLTTFVAAGLLTLAYLCIRRTRWQARHALAGVALGLANFGNILTYVRAHQSLPDHPALVFGAMNMGVITVGTLVGALAFRERLSALNLAGLALALAAIAAMLPW
>CP025069.1|AZW43175.1|1326712_1328179_+|MFS-transporter
MLYAAGHRGPRPVLPQADIRVPMLTTISSFSSLYFATLLMLIGTGLFNTYMGLRLTAQSVNEIWIGALIAGYYLGLVCGARLGHRLIIRVGHIRAFVACAAVATSMILAQALVDHLPLWLLLRLISGIVMVTEFMVIESWLNEQTENHQRGRVFSVYMVVSGLGTVLGQLALTAYATLDDGPLTLVAMCLVLCLVPIAVTARSHPPTPLPAPLDLRFFASRVPLSLTVLFVAGNLSGAFYGLAAVYAAKHGLSTSQSAIFVAAAVTAGLLSQWPMGWLSDRINRAGLIRFNAAVLVLLPVLMWGWIVLPYWAMVALSCVFGVLQFTLYPLGAAFANDHVEPERRVGLSAILLMTYGVGACLGPLIAGVMMSLGGPGMYYVFISACAVILVWQVRPARVTGAHQVDEAPVHFVPMPDTLQSSPAAVALDPRVDPDVDITMEMADPGPDVVEPPAPAGPPAPSADSESTSAPQAGEQVAPDDAAARRTGT
>CP025069.1|AZW43174.1|1326197_1326701_+|peroxiredoxin
MTIKVGDRVPDGTLTEFIETETAGCTLGPNAFQVADLVKGKKIALFAVPGAFTPTCSAKHLPGYVEQAAALRAKGIDEIWCVAVNDAFVMGAWGREQQAGGKVRMLADGSALWTTALGLELDLVQRGMGVRSQRYSALIDDGVVKQLNIEAPGKFEVSDAATMLAQA
>CP025069.1|AZW43173.1|1325529_1325961_-|hypothetical-protein
MTRHFLAALLLAAASGAASAQAGADPAGQAIFDQIVLTSGAANGAARTCGASPPDLAQHAETWRLNLRRYADEYHYAFDSFDERYARGQQEGAEMMADMRASGVDGCTGALASFQRERTMTYDEMKQAIAEATDGLPEDQPAD
>CP025069.1|AZW43172.1|1324615_1325521_+|dienelactone-hydrolase-family-protein
MTHRRFPMTDADPHFDSLLPPLTLTRRGFVVTSLAAGFSLAAGAAAAQSAIHTDAAGLTAGKVDIPTPDGKMPAYRAAPAGKKDLPTLLVVSEIFGVHEYIQDVCRRLARLGYQAVAPELFARYGDPTGYTDIGRLRAEVVDKAGDRQVLADLDAAAAWAAANGGNPSRLGILGFCWGGRIVWLYAAHNPGLKAGAAWYGQLAGQASELKPRSVLESIGDLKAPVLGAYGGKDAGIPLSDVDRMRLALAKGPQAARDSRIDVYPEAPHAFHADYRPSYRKAEAEQAWQRMLDWFGQHGLAA
>CP025069.1|AZW43171.1|1321178_1324619_+|hypothetical-protein
MPVRMPGVRLTRRTVKVLLATVLVVLLLAGLAAWQVPRIVRGALTQDVSAMLGRDVSVGKIRFNPFTLTLRAHDLALAQPEGAAPLLQVAELDVSASWMSLFWFAPVVDSLVVRQPRIALVREDVTRFNFSDIQQKVADMAAQAPPEPEPRPGLPRFSLNNMVLEGGEITLDDKVSGRQQRIDEIALGVPFISTFGYATDIDVQPRVHMRINGSPFDLTGVARPFDTVPSSTLDVSFAGLELEKWADAWPLPLPVKLERALLDSNLQVLFEQPRDAAPRIKVVGELGLRQLDVRESSGDVLAQWGALAVRRIAFEPMQRSLYIGEVELWSPQIQTRRYADQRLNWLDIAQKLQKLGAGDAPARPAAAPAPTPAPATPAPAPAPAPAAEAAAAPQASAASAPPDAWHVAVDAINVRDAELHLRDAVTKLDYVMNGVGATVEGLELPQPPDRPIGLWLTMDSTIDGSWLRAKGPLTLEPLNLDVKVELDRLALARLAPAVRASAPILVEDGRLGAQARVRLAQREGGTQVVAEGVALRLSDLSLRDESVKPAVPVSVKQFEARFDRLAPDAQPSPFTLKVDGVQGEGALAMQGALTAQPLALKSSVDLARLDLAPFAPYIASSLNATVRAINLSARGDAEFAAAAGAAPMKAAWRGAVDVNDLDLADRVNRDDFMQWKRLGLAGMQVSVNGDAFAANLGDITLEDFYGRVLLNAEGRLNVMDLVAEPGQAGGSITQDTQTRARAAAPAKPGPMPDIAIGSVTLKGGKMTFTDRFVKPNYTAELSRIEGSVSAVSSRQPKPAKVNVAGRVYTSAPFSISGTVQPFAQFLSLDLKASAKGVDLPRFTTYSAKYVGYPIKRGKLSLDVQYQIKDRALQASNRVVLNQLTFGDKTDSPDAVKLPVLLAVALLKDSRGNIDINLPISGSLDDPQFSVGGIIVRVLVNLVVKAVTSPFTLLASAFGGGEELSYIEFDPGSAALTPDAESRIETLAKALNDRPGLKLDVAGRADPASDEEGLRQAWVERQIRLAKARDTAGRGKKPAPDGVEVAPAEREKYLEEVYDDTKIEGKPRNFIGMAKSIPAEQMEALLRGAAPVGADDLRKLADARAQAVYEKLQAAGPADRIFVVAPQLDADGIKDDGKPTRVDFSLK
>CP025069.1|AZW43181.1|1332980_1333874_-|carboxyvinyl-carboxyphosphonate-phosphorylmutase
MSSAAKKFRDLLNSAEFIVSPGVYDGYSLRLVQAAGFKTACTSGAALSNALLGIADIGVMGLMENVNHCRMLARSVDIPLTADADTGYGNPVNVFHTVQMFEEAGVAGVNLEDQVSPKRCGHMPGKDVIPLEEMVKKIEAACLARRDDNFVIIARTDALAVEGIEGAARRAQAYAAAGADVIFPDAVRTAEDIGRIVEAAGVPVSVNMGFGVRQRPTTPLIPLPELKRLGVKRISLPRMLPAAAIHGMRSALEEMKNVIATGTPAHRPDLLVGIEDIMELMDYETMRALEKKLTTLD
>CP025069.1|AZW43182.1|1334074_1336759_+|aconitate-hydratase-AcnA
MLSRMTDRGYMNASFLHQGTPIHYADVAAAAARCGVELASLPYVIRILLENLLRHRGRGRPVQEAEIEAVAHWQAHISEQISLHVERVILPDSSGLPVLQDLAALRDAVRAGGGDPARVDTRVPVDLIVDHSLQVDAWSREDAVRRNLDAEFARNEERYRFLKWAQQAFDGLRVYAPGTGIIHQVNLEKLASVVSTGEHGGQQWACPDFVIGGDSHTPMVNGLGVLGWGVGGIDAESALLGRAYTFPIPEVVGVELKGAFRSPVTTTDAALLVTQRLRAEGVTGCMVEFFGEALPGLSVADRATIANMAPEYGATCGFFPVDGQTLDYLRLTGRPAEHIELVRAYCQANGLWRADPTASAVRYARVVRIDLTQAEPCMSGPRRPQDRLPIGQLAEDFRQRLPRPAAEGGFGLDAAALARAPGSAGLRHGSIVVAALTSCTNTSNPSVMLTAALVARAARQRGIAPPAWVKRSLAPGSRTVTDYLAATGLLEDLEALGFGVIGYGCTTCGGKSGPLAPEVAQDIADNQWVVCTVLSGNRNFEGRIHKLARANYIGSPPLVVAYALAGRIDIDFSREPIATDAQGQPVWLHELWPSEAQLDGIMARALSPQGFRKVWGLEPEGASQWRALAEVSGQHWHWDDSSYLVEPPFFKAPAQQFGQRLGGARVLGLYGDSLTTDHISPSGEIPAEAPAGQYLLSLGVAQRDFNTYVARRSNFEVMTRATFGNIRIRNLLVPGTEGGYTRHFPSGELLSIYDASRRYMAAGTPTIVLAGEEYGTGSSRDWAAKGTALLGVRAVLAKSYERIHRANLVGMGVIPFQFERGQGWRELGLDGSETFEFFDVLDGIRQGRPVRVAASRDDGMRVEFSVMPQALTESERELLLQGGIPASVLADYLQ
>CP025069.1|AZW43183.1|1336783_1338157_+|dihydroorotase
MARPLDTLLANTLVFLEGQGLVSGSIGIVDGRIAVIGSHGQDMPAARETIDCQGLWTLPGVIDPHVHFGFGSPETDFETESRNAALGGTTSVISFHRSADIRESFDAVRERAESQSCIDFGFHFGITSRLHVDTLDEISRRFGVSSYKLYMMYKGAAGLSKGFTDIDDGLLWGALNATRAIPGAVLGVHCENVEVIPWLRDPLRAAGRDDLAAWNEQSPDFLEAENVHRVCYFAGKTGTPVNIVHLSSREALREVRRHRHEGRAAPIYVETCPHYLFLDDRSPAGTYAKVNPPVRSAADIDAMWEGVCDGAITTIGSDHVPRKRATKDKDIWAASNGFPGTGMILPILLHEGYHRRQVPLETLMRVASGATARIYGMPGKGRIAVGNDADLVIVDPDLEKTVDPGELESHADYSPYEGMRLKGWPVRTLVRGRTVARDGRIVDEARQTPGGRYLRRL
>CP025069.1|AZW43184.1|1338189_1338909_+|hydrolase
MSETKRIWDAFLTERDKEVYKAAGYGKRGGFGKRPALFIIDVQYNFCGDKPEDILEGLKQYRTHCGAEAWDAVKHIVPLLELAREKNLPVFYTESGRRNDLLDSGVQVGKNHRGGEKTVLANTHATRTVEELAPLPQDIRIVKQKPSCFFGTIFMSHLNFFDVDTLILVGCTTSGCLRATTVDAYSYNFKVIIPEEASFDRFQSSHAMSLFDLNCKYADVIPTAEVAEYLKALPAREAG
>CP025069.1|AZW43185.1|1338919_1339921_+|GTP-binding-protein
MSTIPITLLTGFLGSGKTSLLRRLIHQPGFARCAVIINEFGEVGLDQALVADQSDDRDIQLLDSGCLCCLASSAIQDTLASLYYRRLRGEIPWFDRVLIETSGLAEPGPIINAVYGDGALARQFRFAGIVTTFDAGFGQGDVQAYAEAKTQLLMADTVVLTKLDLHPEARHLAAWLGELNPTARIYDNSLPDETLARLLLDPAADRPVPAAQGHVPAGAPQASALRHLLAYGIHSVTVDVPDAIGWPAWAAFVHEVQRTFADRLLRLKGVLAFAGQGRMVVHAVHHVFSAPELAGAVPPGLVGKLVFIVRDMEREEVAHAARHLTGAPPADDA
>CP025069.1|AZW43186.1|1340058_1341078_+|LacI-family-transcriptional-regulator
MNFYNFGFLPGAARTRRRVTATVLALAAWAALPAQQAAAQPQWPQRPVTLIVPFAPGGPTDITARVLGEALGKEWKQTVVIENRAGAGGTVGAGFAAKAAPDGYTLLLGVTGSHGIAGSLYPSLTYDPKGDFEAISKVVFYPNAIIANPDVPANNLQELIALAKKDPKYQVYGTDGNGTASHLTMELLRERGGFPMQAVQYKGASPLINDIVAGFVPVGITGFPSAEPQVKAGKLKLIALTTDKDYSGNGYPTIAGQGFPGFAAAPWSGVFAPKGTPAPVVQKIAADIKTVMASPDVVEKMEKLGLTPSAVTLADFETELDRERASWATAVKISGAKVQ
>CP025069.1|AZW43187.1|1341096_1342482_+|FAD-binding-protein
MQFDMEFDVVIVGAGGCGLTAAVAIHDAYPQASIAVLDKAERACGNTVLSSGSIPAAGTRFQQAAGVHDTPRMFQEDLLTIAGEHEAMDLTRALTETSARLVEWLVDSAHVRLTLVETYKHIGHRVHRLHSPPSRRGADLVDDLLRECERRDIPVAWSNAVTGLIASEGRPRGVECATPDGAVTRVGARHVVLASNGYAANKTLLARFVPEVAAAPYGGGTGSEGEAILWGESLGAGLANMKAYQGHASLADPHGSLVTWTVIEKGGIIVDRSGRRFGDESIGYSAFAALELARTGPFWVIADTRVRDVTAAGQEEYAELVAHGGVLEGGLEELCARTGIDAAGLAATLRAARQCAADGGADAHGRAQWGLGPLGERLTATRIGPAIFHTQGGLRVDIDGRVLTDQAGVIDGLWAGGGAACGISGNRGSLGYMSGNGLLSALGLGLRIGQAIASRLGEEQA
>CP025069.1|AZW43188.1|1342478_1343855_+|MmgE/PrpD-family-protein
MTHDFSGSLMAGGTPTRALADWCAALRDGRPSEAVLRESARHVLDTLAACAAGMRQPLVRAAIELERGINAQPGPVALFGGPERWTVLESAGLMAVACHALEMDDGNREGSIHPATTVVPAVLALGWRQGADYLEFLCAVVAGFEVAVSIAEALHPHASQRGFQTTPVAGVVGAAAACATLLGLDSAGIESAMGLAASASGGLFAYLAGGGNVKKFHPGHAAREGLRAALMARQGAAQGPRGVIEGHAGLLQAFGGLAQWDGSRARERAAPAIVRSYLKPYPCCRHIHPAVDAVLALKAGAAWQAADVAAIEVETYGAAMPHARLPWDTLEVAQLSFPWVMALACADGAVTLAGFSEAARARPDLNALAARVSVTQTQECDSLYPASGPARVTLRLRSGESLSEWVADPLGSADRPLADEALDRKAEEAFGLVFPAAKVQALIGQLRRLEPWPLAELY
>CP025069.1|AZW43189.1|1343923_1344919_+|tripartite-tricarboxylate-transporter-substrate-binding-protein
MSRKFLSALRNAGMCGVMMLGGLSAAPAAAADAWPGQPIRMVVPFAPGGAVDTLGRLVARQLTEVLGQSVVVENKPGAGGNIGSNIVAKAAPDGYTLLFGAAGNITINPSLFDNMPYDVEKDLAPAALAGQSMNVLVVPAALPVNSVAELIDYARKHPDKLNYGSSGNGGTTHLAGELFNAMAGTRITHVPYQGSGPAMIDLLAGRVQLMFDNLPSAMPHIQRGDLKALGVTGAMRSPQLPDVPTIAETGLAGFEATTWFGVFAPAGTPQAVLERLNGAVNKVMQSAPVEQKLQSMAAYFQPTSRAQFQTLIHDDTAKWARVIKAAGIKLN
>CP025069.1|AZW43190.1|1344951_1346337_-|hypothetical-protein
MTPALPATPSDRFAAGLAEVCQFVSTLTWDAIPDAVRQRAVDVLCDDLAAMAAAAPEPELRRYAALLTARAGAAESPLLSPALPRVGRMEAASWNALAGNWCELDEGFRLAICHAGIYTLPALLAEATATRARLRDVLTALTGAYELVTRCAMSFHVMPPPVHGHALWSAVGAAAAVSLLRGHDAQTLLRAVSGAITTASMGPRSHLMAGVLIRNGWAAAGAVNGMQCADWAECGFGGSPASMEEVCAGIVKASLREGEITRELGTRWSLSHGYQKLYSCCQHGHSAVQACLALRADPAFEPARIRAIRLDTHPLALTLDTVHPTTTLGARFSMPHMVAAALALGTGSAAAFSQSTLSDPAVAALREQVRMRLADAPMPAPHDRPAWLEVELDDGRVLRASCLSATGSPDNPVTPAQFEDKLARLGADVLPRLPQAIAPAAWQAALDEETGAWLAALARRA

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Crispr_ID: CP025069_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025069_7

4565818-4565901

Orphan

Consensus_repeat	Method
GGTGCCTGTCCCCGCGGGGACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025069_7

>merge|CP025069|7|4565818-4565901|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAGATACCGTCTTGGCCGTCAAGCGTTCTGGCGTATGACGGGGTGCCTGTCCCCGCGGGGACAG

>CP025069|7|7|4565818-4565901|CRISPRCasFinder
GGTGCCTGTCCCCGCGGGGACAG	ATACCGTCTTGGCCGTCAAGCGTTCTGGCGTATGACGG
GGTGCCTGTCCCCGCGGGGACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP025069.1\|AZW45964.1\|4563968_4564571_+\|phosphoheptose-isomerase	unknown	unknown	gnl\|CDD\|237567
CP025069.1\|AZW45971.1\|4569490_4570984_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|279307
CP025069.1\|AZW45958.1\|4557830_4559117_-\|alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|224921
CP025069.1\|AZW45962.1\|4562436_4563375_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
CP025069.1\|AZW46644.1\|4559127_4559880_-\|cytochrome-C	unknown	unknown	gnl\|CDD\|225418
CP025069.1\|AZW45966.1\|4565307_4565799_+\|TlpA-family-protein-disulfide-reductase	unknown	unknown	gnl\|CDD\|239264
CP025069.1\|AZW45960.1\|4560920_4561871_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	unknown	unknown	gnl\|CDD\|223868
CP025069.1\|AZW45972.1\|4570994_4572050_+\|lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|376860
CP025069.1\|AZW45969.1\|4567906_4568653_+\|pyrimidine-5'-nucleotidase	unknown	unknown	gnl\|CDD\|319791
CP025069.1\|AZW45974.1\|4573204_4575157_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
CP025069.1\|AZW45976.1\|4575720_4576605_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
CP025069.1\|AZW45967.1\|4565955_4566744_-\|MetQ/NlpA-family-lipoprotein	unknown	unknown	gnl\|CDD\|224381
CP025069.1\|AZW45975.1\|4575170_4575734_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|274574
CP025069.1\|AZW45959.1\|4560051_4560924_+\|RNase-adaptor-protein-RapZ	unknown	unknown	gnl\|CDD\|235450
CP025069.1\|AZW45961.1\|4561867_4562440_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|223427
CP025069.1\|AZW45965.1\|4564567_4565311_+\|BON-domain-containing-protein	unknown	unknown	gnl\|CDD\|182907
CP025069.1\|AZW45970.1\|4568702_4569278_+\|nucleoid-occlusion-factor-SlmA	unknown	unknown	gnl\|CDD\|181894
CP025069.1\|AZW45963.1\|4563441_4563969_+\|YraN-family-protein	unknown	unknown	gnl\|CDD\|173148
CP025069.1\|AZW45973.1\|4572071_4573208_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
CP025069.1\|AZW45968.1\|4567004_4567907_+\|acetylglutamate-kinase	unknown	unknown	gnl\|CDD\|234869

Protein	Function_ID	Function_description	E-value
CP025069.1\|AZW45964.1\|4563968_4564571_+\|phosphoheptose-isomerase	gnl\|CDD\|237567	PRK13936, PRK13936, phosphoheptose isomerase; Provisional.	1.25469e-125
CP025069.1\|AZW45971.1\|4569490_4570984_+\|hypothetical-protein	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	8.79928e-116
CP025069.1\|AZW45958.1\|4557830_4559117_-\|alcohol-dehydrogenase	gnl\|CDD\|224921	COG2010, CccA, Cytochrome c, mono- and diheme variants [Energy production and conversion].	1.24489e-08
CP025069.1\|AZW45962.1\|4562436_4563375_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	7.39318e-109
CP025069.1\|AZW46644.1\|4559127_4559880_-\|cytochrome-C	gnl\|CDD\|225418	COG2863, COG2863, Cytochrome c553 [Energy production and conversion].	7.90654e-13
CP025069.1\|AZW45966.1\|4565307_4565799_+\|TlpA-family-protein-disulfide-reductase	gnl\|CDD\|239264	cd02966, TlpA_like_family, TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.	3.46157e-41
CP025069.1\|AZW45960.1\|4560920_4561871_+\|septal-ring-lytic-transglycosylase-RlpA-family-protein	gnl\|CDD\|223868	COG0797, RlpA, Lipoproteins [Cell envelope biogenesis, outer membrane].	1.40267e-54
CP025069.1\|AZW45972.1\|4570994_4572050_+\|lactate-dehydrogenase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	2.93188e-126
CP025069.1\|AZW45969.1\|4567906_4568653_+\|pyrimidine-5'-nucleotidase	gnl\|CDD\|319791	cd02604, HAD_5NT, haloacid dehalogenase (HAD)-like 5'-nucleotidases similar to Saccharomyces cerevisiae Phm8p and Sdt1p. This family includes Saccharomyces cerevisiae Phm8p (phosphate metabolism protein 8) and Sdt1p (Suppressor of disruption of TFIIS). Phm8p participates in the ribose salvage pathway, it catalyzes the dephosphorylation of nucleotide monophosphates to nucleosides, its preferred substrates are nucleotide monophosphates AMP, GMP, CMP, and UMP. Phm8p is also a lysophosphatidic acid phosphatase, dephosphorylating lysophosphatidic acids (LPAs) to monoacylglycerol in response to phosphate starvation. Sdt1p is a pyrimidine and pyridine-specific 5'-nucleotidase; it is an NMN/NaMN 5'-nucleotidases involved in the production of nicotinamide riboside and nicotinic acid riboside, and is a pyrimidine 5'-nucleotidase with high specificity for UMP and CMP. This family belongs to the haloacid dehalogenase-like (HAD) hydrolases, a large superfamily of diverse enzymes that catalyze carbon or phosphoryl group transfer reactions on a range of substrates, using an active site aspartate in nucleophilic catalysis. Members of this superfamily include 2-L-haloalkanoic acid dehalogenase, azetidine hydrolase, phosphonoacetaldehyde hydrolase, phosphoserine phosphatase, phosphomannomutase, P-type ATPases and many others. HAD hydrolases are found in all three kingdoms of life, and most genomes are predicted to contain multiple HAD-like proteins. Members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. HAD hydrolases are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.	3.1321e-47
CP025069.1\|AZW45974.1\|4573204_4575157_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP025069.1\|AZW45976.1\|4575720_4576605_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	8.35973e-90
CP025069.1\|AZW45967.1\|4565955_4566744_-\|MetQ/NlpA-family-lipoprotein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.87828e-136
CP025069.1\|AZW45975.1\|4575170_4575734_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|274574	TIGR03426, shape_MreD, rod shape-determining protein MreD. Members of this protein family are the MreD protein of bacterial cell shape determination. Most rod-shaped bacteria depend on MreB and RodA to achieve either a rod shape or some other non-spherical morphology such as coil or stalk formation. MreD is encoded in an operon with MreB, and often with RodA and PBP-2 as well. It is highly hydrophobic (therefore somewhat low-complexity) and highly divergent, and therefore sometimes tricky to discover by homology, but this model finds most examples. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	3.69381e-19
CP025069.1\|AZW45959.1\|4560051_4560924_+\|RNase-adaptor-protein-RapZ	gnl\|CDD\|235450	PRK05416, PRK05416, RNase adapter RapZ.	1.18739e-149
CP025069.1\|AZW45961.1\|4561867_4562440_-\|methylated-DNA--[protein]-cysteine-S-methyltransferase	gnl\|CDD\|223427	COG0350, Ada, Methylated DNA-protein cysteine methyltransferase [DNA replication, recombination, and repair].	2.06235e-53
CP025069.1\|AZW45965.1\|4564567_4565311_+\|BON-domain-containing-protein	gnl\|CDD\|182907	PRK11023, PRK11023, divisome-associated lipoprotein YraP.	3.14241e-43
CP025069.1\|AZW45970.1\|4568702_4569278_+\|nucleoid-occlusion-factor-SlmA	gnl\|CDD\|181894	PRK09480, slmA, division inhibitor protein; Provisional.	1.36894e-107
CP025069.1\|AZW45963.1\|4563441_4563969_+\|YraN-family-protein	gnl\|CDD\|173148	PRK14685, PRK14685, hypothetical protein; Provisional.	1.06733e-75
CP025069.1\|AZW45973.1\|4572071_4573208_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	2.85531e-160
CP025069.1\|AZW45968.1\|4567004_4567907_+\|acetylglutamate-kinase	gnl\|CDD\|234869	PRK00942, PRK00942, acetylglutamate kinase; Provisional.	1.71108e-158

>CP025069.1|AZW45966.1|4565307_4565799_+|TlpA-family-protein-disulfide-reductase
MKKIALVLIIAVAAGIGGWFMWRPAQTAPDVAFTTLEGQKITMQDLRGKVVLVKFWATSCVTCVKQMPDNIANYNQYHPQGYETIAVAMNYDPPNYVLNFAQTRKLPFPVALDTSGELAQAFGNVRLTPTAFLIDKHGQIIKRYLGEYDKAEFQATVQKALAG
>CP025069.1|AZW45965.1|4564567_4565311_+|BON-domain-containing-protein
MMPDAKTAARPLLLAAALSAAALTLSACAPLVIGGAAATTAVVVTDRRTSGVQLEDQNIAFKAESQIAQKLGNTARVNAMVYGGHVLLTGDAPTEEAKAQATSIAQSIENVKAVTNQLTVGPAADFSTRSNDTWLTSKVKTALINTKYVPSGTISVTTSRGVVYLMGKVTQAEGDYAANAAAGVGGVVRVVKLFETISREEAIRLSGSGTKSGEGSSDGTAPQKAPIESGAAPAGGGSSGVEAIPIK
>CP025069.1|AZW45964.1|4563968_4564571_+|phosphoheptose-isomerase
MRAMDMTSRMTSHFRDAMALCEQSADALAAPLAAAVDLLFAALANNGRILACGNGGSAADAQHFIAELVGRFERERLPLAGIALNTDTSIMTAVGNDYGFDEIFERQVHALGQPGDVLVAISTSGNSPNVVRAMETAREREMHVIALTGKGGGVMGELITPHDVHLCVPHDRTMRIQEVHIILLHALCDGIDALLLGDTE
>CP025069.1|AZW45963.1|4563441_4563969_+|YraN-family-protein
MTDTATRLAFDRAAQAQRRLRHRPPPPSRTGPGAGGSPTQRRGQAHESAALRWLVTQGLRPLARNLRCRAGEIDLAMRDGGVLVLVEVRARAHAGYGGAAASVGASKQGRLARAAALLLPGLLRRHWPGAPPPVRFDVVAFEAGRPRWLRGAFWLAEHGPARRRRGQDTEDWRVR
>CP025069.1|AZW45962.1|4562436_4563375_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MNQDVLSPAPGDAWSRVADRVAAQHWPAATLYVIATPIGNLGDLGLRAWQALVRADVIAAEDTRASRTLLDAWGVTTPLMAAHRHNEASAAQAICERLAQGQRVALVSDAGAPAVSDPGARIVRAVREAGHAVVPVPGPSAVIAALMGSGATSDENPAFAFAGFPPAKAVARQRWLRQWCALPAPVVMFESPHRLAATLADLREAGGPARLLTVARELTKRFEEIATMPLGEAADWLAADAHRGQGEFVLIVHQAPGAQDDEADPADPRTDALLDALLESLSVRDAARVAAKVTGLARDVLYARALARKEQA
>CP025069.1|AZW45961.1|4561867_4562440_-|methylated-DNA--[protein]-cysteine-S-methyltransferase
MNPPSEQATDILYCDTDTPLGPMRLAARAQALCGAWFVDQRDCPAAAGWTLDAAHPALRQAAAELEQWFAGQRREFEVAMQPEGTPFQRQVWQALLELPFGATISYGELARRVGRPKAARAVAGAVGRNPISILIPCHRIIGHDTSLTGFGGGLPRKQALLAHEGHRYLSRAARARRVSTTQMELPFGAV
>CP025069.1|AZW45960.1|4560920_4561871_+|septal-ring-lytic-transglycosylase-RlpA-family-protein
MIRSRPLALLSTLLLALAIAGCSTPGKKRGGYYKDDGPDANPPSNLDNIPDATPRLEPLASGPNRPYVVFGKRYVPDTSERPFRQQGLASWYGKKFHGNSTSNGESYDMYAMTAAHPTMPIPSYARVTSKLNGRTVIVRVNDRGPFHSDRIMDLSYVAAHKLGIIGPGSGPVTVERILPAEILAMNGGTPAPRPGSAPASGALPIAAPSAAAAVELPAATQLASNAPTPPRPATGADSGIYLQLGAFSQPANAESLVSRINGQLDPASGIPPAVVEQANNLYRVRIGPYATREAALGAVQPVADRTGILPSLSATP
>CP025069.1|AZW45959.1|4560051_4560924_+|RNase-adaptor-protein-RapZ
MLRVVLITGISGSGKSVALRLLEDAGFTCIDNLPVRFLAEFIANARDDAMERVAVAIDVRSPGELAELPDVITASRAMGTSLSVIFLDANTDTLVQRYSESRRRHPLTDRLARGGKTPSLAECIALERELMAPLRDQEHVIDTSDLTPGQLRAWIRDLIQADRPPLVLTFESFAYKRGVPSDADLMFDVRCLPNPYYDRTLRPLTGRDEPVATWLGGFDIVTQMIDDIAAFIRRWLPQYTQDTRNYLTVAIGCTGGQHRSVYVVEQLARRFSDHDPLLVRHRTQLPDDPA
>CP025069.1|AZW46644.1|4559127_4559880_-|cytochrome-C
MLAFKSDLRIAMRAWRAACGALAAAAGMLAMSQAAAQGEAVLRPDTMAARVAACTACHGEQGRAGPDGYYPRLAGKPQDYLYHQLLNFRDARRQYPPMEHLLDGLPDAYLREMAAYFAGQDVPYPAPARIEASAALVERGRLLVREGDPARDIPSCASCHGASLAGVAPAIPGLLGLPRDYLVAQIGSWQNGLRRAAAPDCMAQVSLKLTPEDIGAVSAWLAGQPVGHPYTPQPAGSLALPLECGSQAGH
>CP025069.1|AZW45958.1|4557830_4559117_-|alcohol-dehydrogenase
MKIVKRVLVVIILALLAAAATLYWLGTRDHVPAGPQAAPATGSADELVEQGRYLARAGNCMACHTARGGQAYAGGTPIPTPFGTLYGPNITPDAETGIGGWSADDFWQALHNGKGPDGRLLYPAFPYTEYTRMTRADADALYAFLRTVEPVRQPSRPHALESPYDQRLLLAAWRALYFEPGGPQPDPGQSLQWNRGRYLTEGLGHCAACHTPRNSLGATRAAEALGGGMIDGLGWYAPPLTGQPGTGLGDWSAQDIAALLTTGIAPHSTVAGPMAEVVLGSTQYLSDDDALAIGAYLKSLPAAAQPPARRGAPSATVMELGGKMYSKSCAQCHQADGKGSFPAWPALAGNPSVIAAEPANVIRMVLDGGFAPATATNPRPHGMPPFAQALPDNDIAMLVSYVRNSWGNQAGAVTPLDVKRTRESGAGR
>CP025069.1|AZW45967.1|4565955_4566744_-|MetQ/NlpA-family-lipoprotein
MRINFVRSALLASALLLAGGAAQAEKLVVGATQVPHAEILEVVKPVLAKEGVELDIKVFTDYVQPNLQLADKQLDANFFQHQPYLDTFNKDRKTDLVSVGLVHVEPFGGYSKKIKSLAELKDGATIAIPNDPSNSGRALLLLQKQGLLKLKDPANIVATPIDIAENPKKLKFRELEAAMLPRSLDDLDLALINTNYALEAGLVPTRDALFIEGADSPYANLVAARPDNKDAPAVKKLVNALHSEAVRKFIIEKYKGAVVPAF
>CP025069.1|AZW45968.1|4567004_4567907_+|acetylglutamate-kinase
MTDTPDPAAVLSPAVKAAVLSEALPYIRRFHGKTIVVKYGGNAMTEERLQRSFAHDVVLLKLVGLNPVVVHGGGPQIDDALRRIGKQGTFVQGMRVTDAETMEVVEWVLGGQVQQDIVMMINEVGGKAVGLTGKDGMLIQATKKLMVNKDDPSQPLDIGFVGDITRVEPAVVKALQDDQFIPVISPIGYGEDGTAYNINADVVAGKMAEVLGAEKLLMMTNTPGVLDKGGKLLRSLSAQTIDELFADGTISGGMLPKISSSLDAAKNGVNSVHIVDGRVPHCLLLEILTDQGVGTMISSH
>CP025069.1|AZW45969.1|4567906_4568653_+|pyrimidine-5'-nucleotidase
MLARRYLLRPAARLRRSRRIATAAPERLWLFDLDNTLHDTSHAIFPLIDRGMTEAVAETLAVDEATANRLRAEYWRRYGATVIGLVRHHGVDADAFLHRSHNFEVAPLVRAETALADKLRRLPGRKVLLTNAPQHYARAVLRHLGLLRQFDSIWAIEQMRMHGQFRPKPSDALLRYVLAREGVPAARAVLIEDTLDNLRSARRVGLRTVHVFHPGTPFARGHRQRPGYVDLRVNSVSDLLLRRRPLRG
>CP025069.1|AZW45970.1|4568702_4569278_+|nucleoid-occlusion-factor-SlmA
MASKPGERKTQILHTLAEMLEQPHAARITTSALAARMQVSEAALYRHFASKAQMFEGLIEFIETSIFTVVNQIAVSEPYGMGQARKTVSMLLAFAERNRGITRVLTGDALVTEDNRLQERINHINDRIEASLKQCLRVAVSDGALPADANIAAHASLLTHLVLGRWLRYAQSGWRVAPTTHLEEHLRLALG
>CP025069.1|AZW45971.1|4569490_4570984_+|hypothetical-protein
MTAPAAVPAPQSPPKVKVPIGLIAGIVAMVAVLLLPLPAELPPAGHRMLAILAFAVVVWITEAVSYEASAIMITTLMAFLLGTAPSVKNPEVLYGTSAAISMALTGFSNSALALVTGALFIAAAMTFTGLDKRIALVTLARVGTSTRRILLGAIAVTIVLSLVVPSATARSAAVVPIMLGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLTVGFMDKMLGERVAWSDWLIAGVPWSLLMSAVLVFVVLKLLPPESDAIAGGKEAVEASLRELGPMTSAQKRLMLVSIMLLLFWSTEGKLHRFDTTSTTYFGLVLLMLPRFGVMTWKDVQTRIPWGTVIVFGVGISLGTALLTTQAGQWLGAQVVAHTGLDHLGPLGIFAILSAFLILIHLGFASATALTSAMLPILIAVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVALGTETFTAKQFAKVGILLTIVGYLLMLLMSVTYWRWLGWM
>CP025069.1|AZW45972.1|4570994_4572050_+|lactate-dehydrogenase
MKLPIAQAIAFGQRLLTAQGVPDDIARDVAEHLVESDRVGYTSHGLSILPNYRRVLAEGFVKADGRARLLNDRGAMLAFDGDNGFGQHVGKAVMQQAIERARQYGQCIVTLRRTHHLGRMGYYGEMAAEAGLILLAFTNVVNRPPTVAPYGGAQACLTTNPLCFAGPLPGGRRPFLVDMATSSIAVNKARVLAAKGEPAPDGALIDAQGNPTSDPNALFADPPGALLPFGGHKGYAMGLVAELLAGVLSGGGTIQPEHPRNGVATNNMFAILLDPQVDFNADWRTQEVGAFIDYLHACPPQPGVDRVQYPGEYEAMNRARHAEAIEFEGAIWDSLARLAQDLGVTDALPGA
>CP025069.1|AZW45973.1|4572071_4573208_-|rod-shape-determining-protein-RodA
MKRLGLILLRVFTAFDWPLLLILILFTLLGLTVMHSAVGSTDWRFAEQSRNFLIAFAAMWAMALVPPNTLMKLALPFYVLGVILLLGVEFFGETSKGATRWLNLGVTRIQPSEMMKIAVPMMLAWYFQRHDGAVRIRDFFVAAAMLAAPFVLIVLQPDLGTALLVFGAGFFVIYFAGLSFKLLVPCLLAGIIAIGTLIYYEDQLCEPEVDWVVLHDYQKHRVCTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAEEFGLYGGVALLVLYGLFMARGLAIAARATSQFGRLLAGAITMMMFIYVFVNVGMVTGILPVVGVPLPFMSYGGTALLTMGIACGILMSISRRRPAPA
>CP025069.1|AZW45974.1|4573204_4575157_-|penicillin-binding-protein-2
MFEFKKTGQQQKQRFRLRAWVGGLFALACFGVLAGRFWYLQVDRYEGFSERADRNRIAVVPIPPRRGEILDHNGEVLARNYRTYTLEVVPAQAGNLDQLFDRLARVVYISPSDQRRFKRRVGESSRYASLQLRNNLNDTEAAWFSAHSFEFPGVELRARWVREYPQGEAAAHVVGFIGRIAENDIEELDKAGQLGNYRGTDVIGKKGIEKTWEAALHGRTGLEEVEVTAGGRPMRTLRRIDPVPGSDIMLSIDLELQKLAEQAFEGRRGALVALDPDTGEVLAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLYGTYPIGSTYKPFVALAALELGKRRATDRMPDPGYFEFGGQKFRNAGGAAYGMTDMHRAIVVSSDTYFYSLGPEIGVNALHDFSKQFGFGQITGIDLEGEKAGVLPSTEWKRKAYKDRDRQRWYAGETISVAVGQGYNSFTLLQLAQATSTLANSGLYRRPHLVHAIRDSRSGSVNPTEIAPDYRIPLKQENVDVIKRAMADVVRAGTARRAFAGAPYQAAGKTGTAQVFSLRGGQYRASAIDERLRDHALFMGFAPVEQPRIAVALIVENAGWGASAAAPIARTLFDNWLGRADAPSVVRAGAKPVAAEPEAAALELGATDGPMQERRQ
>CP025069.1|AZW45975.1|4575170_4575734_-|rod-shape-determining-protein-MreD
MERTKVSVPARRKLGTPSNVEPERLARPAHGVFVWGTVLLVWLLSLLPWRQWPGSPDVLVLVIAFWCVHEPRRVGLLTAFVFGLLLDVHDAGLLGGHALSYTLTAYGAIALHRRLQRFDLWSQAMHMLPVFFVAQLVTQIILAWLAGKWPGWQWAVSVGLTAAIWPLAGWVLHMPQRRYDDVESSAV
>CP025069.1|AZW45976.1|4575720_4576605_-|rod-shape-determining-protein-MreC
MQRQATPPLFRRGPPAEVRLAVLVILALALLIVDSQLRVLEPVRRAVSVALYPFQRAVMAPRDLVQQVDEWINAASLIRSENEALQRQRIELAQVATHAAQLAAENAQLRRLLGVTDTVAQSAVVVEVLYEPPNAFHQRLVFNKGAKSGLAPGMPVIDEGGVVGQIVRVTPMTAEAALVTDERVSIPVQVLRNGLRLIAFGANTPGVIEVRYLAANADIKVGDTIVTSGVGGLFPAGLPVAKVASVERDTASGFARALGEPLAHPERYRHFLVLQVDVDQAESNRQEADVDGTD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP025069_6	6.4\|4262900\|19\|CP025069\|CRISPRCasFinder	4262900-4262918	19	CP025069.1	2943541-2943559	2	0.895

1. spacer 6.4|4262900|19|CP025069|CRISPRCasFinder matches to position: 2943541-2943559, mismatch: 2, identity: 0.895

gaaagccaaggaagaagcc	CRISPR spacer
gaaagccctggaagaagcc	Protospacer
*******  **********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025069_6	6.3\|4262855\|22\|CP025069\|CRISPRCasFinder	4262855-4262876	22	NZ_CP024426	Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence	59405-59426	2	0.909
CP025069_6	6.3\|4262855\|22\|CP025069\|CRISPRCasFinder	4262855-4262876	22	NZ_CP020445	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence	173376-173397	2	0.909
CP025069_6	6.3\|4262855\|22\|CP025069\|CRISPRCasFinder	4262855-4262876	22	NZ_CP044079	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence	13049-13070	2	0.909
CP025069_6	6.3\|4262855\|22\|CP025069\|CRISPRCasFinder	4262855-4262876	22	NZ_CP031079	Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence	408309-408330	2	0.909
CP025069_3	3.1\|1332169\|27\|CP025069\|CRISPRCasFinder	1332169-1332195	27	NZ_CP022417	Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-2, complete sequence	207997-208023	5	0.815
CP025069_3	3.1\|1332169\|27\|CP025069\|CRISPRCasFinder	1332169-1332195	27	NZ_CP035511	Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence	363793-363819	6	0.778
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	NZ_CP045122	Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence	48810-48843	7	0.794
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	NZ_CP040937	Hymenobacter sp. DG01 plasmid unnamed, complete sequence	10459-10492	8	0.765
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	NZ_CP026517	Deinococcus sp. NW-56 plasmid unnamed1, complete sequence	312591-312624	9	0.735
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	NC_016587	Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence	330686-330719	10	0.706
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MN693112	Marine virus AFVG_25M205, complete genome	33502-33535	10	0.706
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MN693088	Marine virus AFVG_25M204, complete genome	33652-33685	10	0.706
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	NZ_CP029833	Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence	71748-71781	10	0.706
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	NZ_CP040096	Pantoea sp. SO10 plasmid unnamed1, complete sequence	483969-484002	10	0.706
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MF140406	Mycobacterium phage DarthP, complete genome	59842-59875	10	0.706
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	NZ_CP013109	Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence	540870-540903	11	0.676
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	NZ_CP024309	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3b, complete sequence	33093-33126	11	0.676
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	222765-222798	11	0.676
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MH271308	Microbacterium phage Percival, complete genome	23422-23455	11	0.676
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MH271298	Microbacterium phage Floof, complete genome	22428-22461	11	0.676
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MG812490	Mycobacterium phage Holeinone, complete genome	25723-25756	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MH001452	Mycobacterium phage Kheth, complete genome	25743-25776	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MH697584	Mycobacterium phage FrenchFry, complete genome	25861-25894	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MN813678	Mycobacterium phage Lephleur, complete genome	25741-25774	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	KT365402	Mycobacterium phage Tres, complete genome	25738-25771	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	NC_043767	Mycobacterium virus TA17a, complete genome	25725-25758	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MN234225	Mycobacterium phage Rhinoforte, complete genome	25851-25884	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	KR997932	Mycobacterium phage Godines, complete genome	25741-25774	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MH590591	Mycobacterium phage Sabella, complete genome	25735-25768	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	JN618996	Mycobacterium phage Arbiter, complete genome	25819-25852	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	KX443696	Mycobacterium phage Laurie, complete genome	25732-25765	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	MH727546	Mycobacterium phage Eaglehorse, complete genome	25771-25804	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	KT880194	Mycobacterium phage Glass, complete genome	25861-25894	12	0.647
CP025069_6	6.1\|4262720\|34\|CP025069\|CRISPRCasFinder	4262720-4262753	34	NZ_CP032678	Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence	137214-137247	12	0.647

1. spacer 6.3|4262855|22|CP025069|CRISPRCasFinder matches to NZ_CP024426 (Paracoccus yeei strain TT13 plasmid pTT13-4, complete sequence) position: , mismatch: 2, identity: 0.909

ggctgccgcggagaaagccgcg	CRISPR spacer
cgctgccgcggaggaagccgcg	Protospacer
 ************.********

2. spacer 6.3|4262855|22|CP025069|CRISPRCasFinder matches to NZ_CP020445 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed5, complete sequence) position: , mismatch: 2, identity: 0.909

ggctgccgcggagaaagccgcg	CRISPR spacer
cgctgccgcggaggaagccgcg	Protospacer
 ************.********

3. spacer 6.3|4262855|22|CP025069|CRISPRCasFinder matches to NZ_CP044079 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed2, complete sequence) position: , mismatch: 2, identity: 0.909

ggctgccgcggagaaagccgcg	CRISPR spacer
cgctgccgcggaggaagccgcg	Protospacer
 ************.********

4. spacer 6.3|4262855|22|CP025069|CRISPRCasFinder matches to NZ_CP031079 (Paracoccus yeei strain CCUG 32053 plasmid pYEE1, complete sequence) position: , mismatch: 2, identity: 0.909

ggctgccgcggagaaagccgcg	CRISPR spacer
cgctgccgcggaggaagccgcg	Protospacer
 ************.********

5. spacer 3.1|1332169|27|CP025069|CRISPRCasFinder matches to NZ_CP022417 (Sulfitobacter pseudonitzschiae strain SMR1 plasmid pSMR1-2, complete sequence) position: , mismatch: 5, identity: 0.815

cggggaagtggcaggcgtgacggtggt	CRISPR spacer
caccgaagtggcaggcgtgaccgtggc	Protospacer
*.  ***************** ****.

6. spacer 3.1|1332169|27|CP025069|CRISPRCasFinder matches to NZ_CP035511 (Haematobacter massiliensis strain OT1 plasmid pOT1-1, complete sequence) position: , mismatch: 6, identity: 0.778

cggggaagtggcaggcgtgacggtggt	CRISPR spacer
cggggaagtgacaggcgagacggcccc	Protospacer
**********.****** *****.  .

7. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to NZ_CP045122 (Rubrobacter sp. SCSIO 52915 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.794

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
tgcggcagccgagcagcaggccgccgagcagcag	Protospacer
 ***** ****** *************. ** *.

8. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to NZ_CP040937 (Hymenobacter sp. DG01 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.765

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
ctcgcccgccgagcagcaggccgccggtctgaaa	Protospacer
  ** ******** ************.   ****

9. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to NZ_CP026517 (Deinococcus sp. NW-56 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
cacggccgccgggcagcaggccgccgcgctggaa	Protospacer
 .*********.* ************ .  *.**

10. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to NC_016587 (Azospirillum lipoferum 4B plasmid AZO_p4, complete sequence) position: , mismatch: 10, identity: 0.706

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
gcaggccgccgacaagctggccgccgagggcgga	Protospacer
*  ********* **** *********... ..*

11. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MN693112 (Marine virus AFVG_25M205, complete genome) position: , mismatch: 10, identity: 0.706

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
agtagccgccgagaagaaagccgccgaagcagac	Protospacer
.*..************ *.*********. ..*

12. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MN693088 (Marine virus AFVG_25M204, complete genome) position: , mismatch: 10, identity: 0.706

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
agtagccgccgagaagaaagccgccgaagcagac	Protospacer
.*..************ *.*********. ..*

13. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to NZ_CP029833 (Azospirillum ramasamyi strain M2T2B2 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.706

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
gcaggccgccgacaagctggccgccgagggcgga	Protospacer
*  ********* **** *********... ..*

14. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to NZ_CP040096 (Pantoea sp. SO10 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.706

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
gcacgccgccgagcagcaggccgacgaacatgcc	Protospacer
*   ********* ********* **** * .

15. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MF140406 (Mycobacterium phage DarthP, complete genome) position: , mismatch: 10, identity: 0.706

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
cctggccgccgagtggcaggccgccgacgaggcc	Protospacer
  .********** .************ .**.

16. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to NZ_CP013109 (Sinorhizobium americanum strain CFNEI 73 plasmid B, complete sequence) position: , mismatch: 11, identity: 0.676

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
tgcggccggcgagaagcaggctgccaagcccgcc	Protospacer
 ******* ************.***.*.   .

17. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to NZ_CP024309 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3b, complete sequence) position: , mismatch: 11, identity: 0.676

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
tgcggccggcgagaagcaggctgccaagcccgcc	Protospacer
 ******* ************.***.*.   .

18. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 11, identity: 0.676

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
tgcggccggcgagaagcaggctgccaagcccgcc	Protospacer
 ******* ************.***.*.   .

19. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MH271308 (Microbacterium phage Percival, complete genome) position: , mismatch: 11, identity: 0.676

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
cgtggccgccgagcagaaggccgccgaccccggc	Protospacer
 *.********** ** **********    ..

20. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MH271298 (Microbacterium phage Floof, complete genome) position: , mismatch: 11, identity: 0.676

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
cgtggccgccgagcagaaggccgccgaccccggc	Protospacer
 *.********** ** **********    ..

21. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MG812490 (Mycobacterium phage Holeinone, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

22. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MH001452 (Mycobacterium phage Kheth, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

23. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MH697584 (Mycobacterium phage FrenchFry, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

24. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MN813678 (Mycobacterium phage Lephleur, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

25. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to KT365402 (Mycobacterium phage Tres, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

26. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to NC_043767 (Mycobacterium virus TA17a, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

27. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MN234225 (Mycobacterium phage Rhinoforte, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

28. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to KR997932 (Mycobacterium phage Godines, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

29. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MH590591 (Mycobacterium phage Sabella, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

30. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to JN618996 (Mycobacterium phage Arbiter, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

31. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to KX443696 (Mycobacterium phage Laurie, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

32. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to MH727546 (Mycobacterium phage Eaglehorse, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

33. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to KT880194 (Mycobacterium phage Glass, complete genome) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
acaggccgccgagcagctggccgccgatgccgtt	Protospacer
.  ********** *** ********* .  .

34. spacer 6.1|4262720|34|CP025069|CRISPRCasFinder matches to NZ_CP032678 (Pseudomonas sp. Leaf58 plasmid pBASL58, complete sequence) position: , mismatch: 12, identity: 0.647

ggcggccgccgagaagcaggccgccgaaaagaaa	CRISPR spacer
aatcgctgccgagcagcaggccgccgaactcgcc	Protospacer
... **.****** **************   .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

923179 : 932530

uncultured_Caudovirales_phage(50.0%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZW42811.1\|923179_924823_-	molecular chaperone GroEL	A0A219YK78	uncultured_virus	3.9e-169	59.5
AZW42812.1\|924855_925143_-	co-chaperone GroES	A0A221S4A8	uncultured_virus	1.2e-20	52.1
AZW42813.1\|925384_925711_+	transcriptional regulator	NA	NA	NA	NA
AZW42814.1\|925802_926303_+	arsenate reductase ArsC	A0A2H4J8A6	uncultured_Caudovirales_phage	2.0e-28	45.8
AZW42815.1\|926361_927549_+	MFS transporter	NA	NA	NA	NA
AZW42816.1\|927580_928003_+	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	2.0e-53	75.0
AZW42817.1\|927995_928718_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.1e-88	69.5
AZW42818.1\|928774_929404_-	hypothetical protein	NA	NA	NA	NA
AZW42819.1\|929400_930069_-	hypothetical protein	NA	NA	NA	NA
AZW42820.1\|930141_930777_-	hypothetical protein	NA	NA	NA	NA
AZW42821.1\|930820_932530_-	FAD-binding dehydrogenase	A0A2P0ZL82	Lactobacillus_phage	5.9e-27	28.4

DBSCAN-SWA_2

2222339 : 2230502

Moraxella_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZW43955.1\|2222339_2222927_+	DUF1949 domain-containing protein	A0A1X9I5T8	Streptococcus_phage	2.1e-16	46.8
AZW43956.1\|2222945_2223329_-	thioredoxin	V9SJ74	Achromobacter_phage	8.1e-09	25.8
AZW43957.1\|2223464_2224490_-	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AZW43958.1\|2224693_2225986_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	2.2e-66	35.8
AZW43959.1\|2226118_2227159_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.3e-92	51.3
AZW43960.1\|2227310_2227958_-	glycerol-3-phosphate 1-O-acyltransferase PlsY	NA	NA	NA	NA
AZW43961.1\|2228083_2228842_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	1.1e-68	51.2
AZW46546.1\|2228910_2229600_+	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	4.2e-32	46.9
AZW43962.1\|2229617_2230502_+	peptidase	A0A292GJG6	Xanthomonas_phage	3.5e-15	49.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025069

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection