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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP025375 Bordetella pertussis strain I439 chromosome, complete genome 4 crisprs csa3,cas3,DinG,DEDDh 0 0 30 0

Results visualization

1. CP025375
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025375_1 250591-250675 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025375_2 432034-432127 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025375_3 995303-995397 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025375_4 3431424-3431533 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 122073 110 Planktothrix_phage(16.67%) protease,transposase,tRNA NA
DBSCAN-SWA_2 164893 : 225404 51 Diachasmimorpha_longicaudata_entomopoxvirus(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_3 233336 : 286924 48 Bacillus_phage(25.0%) protease,transposase,tRNA NA
DBSCAN-SWA_4 390857 : 448366 50 Orpheovirus(14.29%) transposase NA
DBSCAN-SWA_5 619753 : 720217 111 uncultured_Caudovirales_phage(13.79%) transposase,terminase,tail,tRNA NA
DBSCAN-SWA_6 747142 : 820304 58 Streptococcus_phage(16.67%) transposase NA
DBSCAN-SWA_7 853051 : 902315 40 Vibrio_phage(33.33%) transposase,holin NA
DBSCAN-SWA_8 911927 : 976867 60 Bacillus_phage(18.18%) transposase NA
DBSCAN-SWA_9 996267 : 1059418 53 Enterococcus_phage(16.67%) transposase NA
DBSCAN-SWA_10 1065402 : 1125465 48 uncultured_Mediterranean_phage(37.5%) transposase,tRNA,holin NA
DBSCAN-SWA_11 1156531 : 1235154 56 Erysipelothrix_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_12 1269629 : 1326840 50 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_13 1417073 : 1481289 60 Salmonella_phage(16.67%) protease,transposase,tRNA NA
DBSCAN-SWA_14 1663756 : 1722748 58 Enterobacteria_phage(33.33%) transposase NA
DBSCAN-SWA_15 1726560 : 1792556 59 uncultured_Mediterranean_phage(11.11%) protease,transposase,tRNA NA
DBSCAN-SWA_16 2216091 : 2277439 52 Yellowstone_lake_phycodnavirus(12.5%) transposase,tRNA NA
DBSCAN-SWA_17 2298230 : 2369384 54 Tetraselmis_virus(10.0%) transposase NA
DBSCAN-SWA_18 2410325 : 2472172 60 Planktothrix_phage(14.29%) protease,transposase,tRNA NA
DBSCAN-SWA_19 2476006 : 2534249 52 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_20 2576527 : 2643027 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_21 2807680 : 2871172 56 Diachasmimorpha_longicaudata_entomopoxvirus(20.0%) transposase NA
DBSCAN-SWA_22 2885647 : 2927006 30 uncultured_Mediterranean_phage(40.0%) protease,transposase NA
DBSCAN-SWA_23 2957391 : 3011622 51 Planktothrix_phage(16.67%) transposase NA
DBSCAN-SWA_24 3234593 : 3269431 36 Erwinia_phage(20.0%) transposase,holin NA
DBSCAN-SWA_25 3281260 : 3332139 40 Planktothrix_phage(33.33%) integrase,transposase,protease,tRNA attL 3314935:3314953|attR 3334823:3334841
DBSCAN-SWA_26 3381026 : 3434767 48 Staphylococcus_phage(33.33%) transposase NA
DBSCAN-SWA_27 3440922 : 3500220 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_28 3515158 : 3573231 47 Planktothrix_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_29 3705354 : 3843734 122 uncultured_Mediterranean_phage(10.34%) integrase,transposase,tRNA attL 3751047:3751064|attR 3795687:3795704
DBSCAN-SWA_30 4005442 : 4070354 58 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage