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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP025367 Bordetella pertussis strain H677 chromosome, complete genome 4 crisprs DEDDh,cas3,csa3,DinG 0 0 30 0

Results visualization

1. CP025367
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025367_1 253739-253823 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025367_2 627147-627256 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025367_3 2910252-2910368 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025367_4 3625008-3625101 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 66153 57 Natrialba_phage(12.5%) transposase,tRNA,protease NA
DBSCAN-SWA_2 71183 : 124171 51 Planktothrix_phage(20.0%) transposase,tRNA NA
DBSCAN-SWA_3 137255 : 209734 60 Bacillus_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_4 218813 : 281239 49 uncultured_Caudovirales_phage(22.22%) transposase,tRNA,protease NA
DBSCAN-SWA_5 558457 : 617757 48 Acinetobacter_phage(27.27%) transposase,tRNA NA
DBSCAN-SWA_6 623912 : 677653 48 Salmonella_phage(33.33%) transposase NA
DBSCAN-SWA_7 726540 : 766540 31 Pseudomonas_phage(33.33%) transposase,tRNA,integrase,protease attL 723839:723857|attR 743727:743745
DBSCAN-SWA_8 776467 : 823036 45 Bovine_alphaherpesvirus(10.0%) transposase,holin NA
DBSCAN-SWA_9 1007251 : 1102337 88 Bacillus_virus(27.27%) transposase NA
DBSCAN-SWA_10 1132723 : 1203694 52 uncultured_Mediterranean_phage(25.0%) transposase,protease NA
DBSCAN-SWA_11 1303914 : 1361125 50 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_12 1416619 : 1473025 50 Enterococcus_phage(16.67%) transposase NA
DBSCAN-SWA_13 1498824 : 1551193 55 Planktothrix_phage(15.38%) transposase,tRNA,protease NA
DBSCAN-SWA_14 1606396 : 1677550 54 Ectocarpus_siliculosus_virus(10.0%) transposase NA
DBSCAN-SWA_15 1698341 : 1759689 52 uncultured_Caudovirales_phage(12.5%) transposase,tRNA NA
DBSCAN-SWA_16 1940874 : 2010526 57 Staphylococcus_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_17 2022022 : 2071970 47 Salmonella_phage(14.29%) transposase NA
DBSCAN-SWA_18 2083174 : 2123865 36 Klosneuvirus(25.0%) transposase,tRNA,protease NA
DBSCAN-SWA_19 2151648 : 2206884 50 Lake_Baikal_phage(25.0%) transposase,protease NA
DBSCAN-SWA_20 2509794 : 2568038 53 Planktothrix_phage(28.57%) transposase,tRNA NA
DBSCAN-SWA_21 2610318 : 2676818 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_22 2879881 : 2961158 59 Planktothrix_phage(16.67%) transposase,tRNA NA
DBSCAN-SWA_23 2970226 : 3019149 45 uncultured_Mediterranean_phage(37.5%) transposase,tRNA,holin NA
DBSCAN-SWA_24 3030756 : 3103250 59 Bacillus_virus(16.67%) transposase NA
DBSCAN-SWA_25 3116757 : 3170275 46 Bacillus_phage(33.33%) transposase,holin NA
DBSCAN-SWA_26 3193298 : 3242320 44 Vibrio_phage(25.0%) transposase,holin NA
DBSCAN-SWA_27 3293913 : 3336820 35 Planktothrix_phage(50.0%) transposase NA
DBSCAN-SWA_28 3346112 : 3378795 42 uncultured_Caudovirales_phage(20.0%) transposase,tRNA,tail,terminase NA
DBSCAN-SWA_29 3706960 : 3839886 118 uncultured_Mediterranean_phage(10.34%) transposase,tRNA,integrase attL 3751603:3751620|attR 3796243:3796260
DBSCAN-SWA_30 4005999 : 4070911 58 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage