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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP025376 Bordetella pertussis strain I462 chromosome, complete genome 4 crisprs cas3,csa3,DEDDh,DinG 0 0 29 0

Results visualization

1. CP025376
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025376_1 644871-644980 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025376_2 2930565-2930681 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025376_3 3645444-3645537 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025376_4 3826896-3826980 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 0 : 70443 60 Natrialba_phage(12.5%) protease,tRNA,transposase NA
DBSCAN-SWA_2 232665 : 307009 54 uncultured_Mediterranean_phage(15.38%) transposase NA
DBSCAN-SWA_3 486899 : 607268 102 Acinetobacter_phage(22.22%) tRNA,transposase NA
DBSCAN-SWA_4 611682 : 675515 49 Pandoravirus(12.5%) tRNA,transposase NA
DBSCAN-SWA_5 694426 : 771735 59 Bacillus_phage(20.0%) protease,tRNA,integrase,transposase attL 741563:741581|attR 761451:761469
DBSCAN-SWA_6 1027071 : 1120059 87 Bacillus_virus(27.27%) transposase NA
DBSCAN-SWA_7 1150445 : 1221415 52 uncultured_Mediterranean_phage(25.0%) protease,transposase NA
DBSCAN-SWA_8 1321635 : 1378846 50 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_9 1469075 : 1521228 45 Salmonella_phage(25.0%) tRNA,transposase NA
DBSCAN-SWA_10 1565152 : 1624014 53 Streptococcus_virus(11.11%) protease,tRNA,transposase NA
DBSCAN-SWA_11 1669186 : 1724777 47 Brazilian_cedratvirus(25.0%) transposase NA
DBSCAN-SWA_12 1732073 : 1778454 39 Pandoravirus(14.29%) tRNA,transposase NA
DBSCAN-SWA_13 1959640 : 2029292 57 Staphylococcus_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_14 2040788 : 2090184 44 Erysipelothrix_phage(16.67%) transposase NA
DBSCAN-SWA_15 2101388 : 2142079 36 Klosneuvirus(25.0%) protease,tRNA,transposase NA
DBSCAN-SWA_16 2169862 : 2231067 53 Lake_Baikal_phage(21.43%) protease,tRNA,transposase NA
DBSCAN-SWA_17 2234460 : 2282475 44 uncultured_Mediterranean_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_18 2321588 : 2385166 49 uncultured_Caudovirales_phage(11.11%) protease,transposase NA
DBSCAN-SWA_19 2530107 : 2588351 53 Planktothrix_phage(28.57%) tRNA,transposase NA
DBSCAN-SWA_20 2630631 : 2697131 56 uncultured_Caudovirales_phage(40.0%) transposase NA
DBSCAN-SWA_21 2900194 : 2981471 59 Planktothrix_phage(16.67%) tRNA,transposase NA
DBSCAN-SWA_22 2990539 : 3039584 45 uncultured_Mediterranean_phage(42.86%) tRNA,holin,transposase NA
DBSCAN-SWA_23 3051191 : 3191759 117 Bacillus_virus(11.11%) holin,transposase NA
DBSCAN-SWA_24 3256217 : 3329379 59 Klosneuvirus(16.67%) transposase NA
DBSCAN-SWA_25 3340666 : 3440779 109 uncultured_Caudovirales_phage(13.79%) tail,tRNA,terminase,transposase NA
DBSCAN-SWA_26 3601448 : 3656422 44 Lake_Baikal_phage(20.0%) transposase NA
DBSCAN-SWA_27 3746235 : 3800430 54 Paramecium_bursaria_Chlorella_virus(14.29%) protease,transposase NA
DBSCAN-SWA_28 3811046 : 3871935 52 uncultured_Caudovirales_phage(33.33%) protease,tRNA,transposase NA
DBSCAN-SWA_29 4006613 : 4071525 58 Planktothrix_phage(40.0%) transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage