CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025522	Bordetella avium strain JBBA chromosome, complete genome	3 crisprs	csa3,DinG,DEDDh,RT	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025522_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025522_1

147995-148100

Orphan

Consensus_repeat	Method
GGGTGTGTTGCCCCCCACGCTGCGCAGGCTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025522_1

>merge|CP025522|1|147995-148100|CRISPRCasFinder
GGGTGTGTTGCCCCCCACGCTGCGCAGGCTTGTCGCCTGCTTGCTGCCCCCCCGCCTTGGGGCGGCCCGGCGGCGGGTGTGTTGCCCCCTACGCTGCGCAGGCTTG

>CP025522|1|1|147995-148100|CRISPRCasFinder
GGGTGTGTTGCCCCCCACGCTGCGCAGGCTTG	TCGCCTGCTTGCTGCCCCCCCGCCTTGGGGCGGCCCGGCGGC
GGGTGTGTTGCCCCCTACGCTGCGCAGGCTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP025522.1\|AZY51192.1\|150912_151668_+\|ABC-transporter	unknown	unknown	gnl\|CDD\|224046
CP025522.1\|AZY51190.1\|148801_149899_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|223597
CP025522.1\|AZY51194.1\|152548_153475_+\|metal-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238557
CP025522.1\|AZY51185.1\|144937_145501_-\|ATP:cob(I)alamin-adenosyltransferase	unknown	unknown	gnl\|CDD\|376665
CP025522.1\|AZY51191.1\|150239_150731_-\|transcriptional-repressor	unknown	unknown	gnl\|CDD\|223806
CP025522.1\|AZY51187.1\|146036_147371_-\|HslU--HslV-peptidase-ATPase-subunit	unknown	unknown	gnl\|CDD\|235364
CP025522.1\|AZY51189.1\|148218_148683_-\|RNA-polymerase-binding-protein-DksA	unknown	unknown	gnl\|CDD\|274124
CP025522.1\|AZY51193.1\|151664_152546_+\|metal-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224033
CP025522.1\|AZY51197.1\|155110_157141_+\|TonB-dependent-receptor	unknown	unknown	gnl\|CDD\|366183
CP025522.1\|AZY51198.1\|157134_158112_-\|tyrosine-recombinase-XerC	unknown	unknown	gnl\|CDD\|234698
CP025522.1\|AZY51188.1\|147397_147937_-\|HslU--HslV-peptidase-proteolytic-subunit	unknown	unknown	gnl\|CDD\|235477
CP025522.1\|AZY51179.1\|139789_140437_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225496
CP025522.1\|AZY51195.1\|153435_154101_+\|DUF1007-domain-containing-protein	unknown	unknown	gnl\|CDD\|368801
CP025522.1\|AZY51180.1\|140569_141829_+\|D-alanyl-D-alanine-carboxypeptidase	unknown	unknown	gnl\|CDD\|224600
CP025522.1\|AZY51182.1\|142898_143171_+\|DUF493-domain-containing-protein	unknown	unknown	gnl\|CDD\|179360
CP025522.1\|AZY51184.1\|143881_144877_+\|lipoyl-synthase	unknown	unknown	gnl\|CDD\|235493
CP025522.1\|AZY51181.1\|141980_142847_+\|D-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|238799
CP025522.1\|AZY51196.1\|154097_155015_+\|nickel-transporter	unknown	unknown	gnl\|CDD\|225125
CP025522.1\|AZY51183.1\|143174_143828_+\|octanoyltransferase	unknown	unknown	gnl\|CDD\|172825
CP025522.1\|AZY51186.1\|145623_145929_+\|RND-transporter	unknown	unknown	gnl\|CDD\|378683

Protein	Function_ID	Function_description	E-value
CP025522.1\|AZY51192.1\|150912_151668_+\|ABC-transporter	gnl\|CDD\|224046	COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism].	3.12405e-81
CP025522.1\|AZY51190.1\|148801_149899_-\|GTP-binding-protein	gnl\|CDD\|223597	COG0523, COG0523, Putative GTPases (G3E family) [General function prediction only].	5.79359e-122
CP025522.1\|AZY51194.1\|152548_153475_+\|metal-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238557	cd01137, PsaA, Metal binding protein PsaA. These proteins have been shown to function as initial receptors in ABC transport of Mn2+ and as surface adhesins in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).	3.63823e-130
CP025522.1\|AZY51185.1\|144937_145501_-\|ATP:cob(I)alamin-adenosyltransferase	gnl\|CDD\|376665	pfam01923, Cob_adeno_trans, Cobalamin adenosyltransferase. Cobalamin adenosyltransferase This family contains the gene products of PduO and EutT which are both cobalamin adenosyltransferases. PduO is a protein with ATP:cob(I)alamin adenosyltransferase activity. The main role of this protein is the conversion of inactive cobalamins to AdoCbl for 1,2-propanediol degradation.The EutT enzyme appears to be an adenosyl transferase, converting CNB12 to AdoB12.	4.47822e-77
CP025522.1\|AZY51191.1\|150239_150731_-\|transcriptional-repressor	gnl\|CDD\|223806	COG0735, Fur, Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism].	1.09365e-40
CP025522.1\|AZY51187.1\|146036_147371_-\|HslU--HslV-peptidase-ATPase-subunit	gnl\|CDD\|235364	PRK05201, hslU, ATP-dependent protease ATPase subunit HslU.	0
CP025522.1\|AZY51189.1\|148218_148683_-\|RNA-polymerase-binding-protein-DksA	gnl\|CDD\|274124	TIGR02420, RNA_polymerase-binding_transcription_factor_DksA, RNA polymerase-binding protein DksA. The model that is the basis for this family describes a small, pleiotropic protein, DksA (DnaK suppressor A), originally named as a multicopy suppressor of temperature sensitivity of dnaKJ mutants. DksA mutants are defective in quorum sensing, virulence, etc. DksA is now understood to bind RNA polymerase directly and modulate its response to small molecules to control the level of transcription of rRNA. Nearly all members of this family are in the Proteobacteria. Whether the closest homologs outside the Proteobacteria function equivalently is unknown. The low value set for the noise cutoff allows identification of possible DksA proteins from outside the proteobacteria. TIGR02419 describes a closely related family of short sequences usually found in prophage regions of proteobacterial genomes or in known phage. [Transcription, Transcription factors, Regulatory functions, Small molecule interactions].	1.3819e-48
CP025522.1\|AZY51193.1\|151664_152546_+\|metal-ABC-transporter-permease	gnl\|CDD\|224033	COG1108, ZnuB, ABC-type Mn2+/Zn2+ transport systems, permease components [Inorganic ion transport and metabolism].	3.23273e-55
CP025522.1\|AZY51197.1\|155110_157141_+\|TonB-dependent-receptor	gnl\|CDD\|366183	pfam00593, TonB_dep_Rec, TonB dependent receptor. This model now only covers the conserved part of the barrel structure.	2.02119e-47
CP025522.1\|AZY51198.1\|157134_158112_-\|tyrosine-recombinase-XerC	gnl\|CDD\|234698	PRK00236, xerC, site-specific tyrosine recombinase XerC; Reviewed.	1.6107e-139
CP025522.1\|AZY51188.1\|147397_147937_-\|HslU--HslV-peptidase-proteolytic-subunit	gnl\|CDD\|235477	PRK05456, PRK05456, ATP-dependent protease subunit HslV.	1.2869e-127
CP025522.1\|AZY51179.1\|139789_140437_+\|alpha/beta-hydrolase	gnl\|CDD\|225496	COG2945, COG2945, Predicted hydrolase of the alpha/beta superfamily [General function prediction only].	5.11582e-55
CP025522.1\|AZY51195.1\|153435_154101_+\|DUF1007-domain-containing-protein	gnl\|CDD\|368801	pfam06226, DUF1007, Protein of unknown function (DUF1007). Family of conserved bacterial proteins with unknown function.	3.48672e-60
CP025522.1\|AZY51180.1\|140569_141829_+\|D-alanyl-D-alanine-carboxypeptidase	gnl\|CDD\|224600	COG1686, DacC, D-alanyl-D-alanine carboxypeptidase [Cell envelope biogenesis, outer membrane].	2.23282e-153
CP025522.1\|AZY51182.1\|142898_143171_+\|DUF493-domain-containing-protein	gnl\|CDD\|179360	PRK02047, PRK02047, hypothetical protein; Provisional.	1.41556e-59
CP025522.1\|AZY51184.1\|143881_144877_+\|lipoyl-synthase	gnl\|CDD\|235493	PRK05481, PRK05481, lipoyl synthase; Provisional.	0
CP025522.1\|AZY51181.1\|141980_142847_+\|D-amino-acid-aminotransferase	gnl\|CDD\|238799	cd01558, D-AAT_like, D-Alanine aminotransferase (D-AAT_like): D-amino acid aminotransferase catalyzes transamination between D-amino acids and their respective alpha-keto acids. It plays a major role in the synthesis of bacterial cell wall components like D-alanine and D-glutamate in addition to other D-amino acids. The enzyme like other members of this superfamily requires PLP as a cofactor. Members of this subgroup are found in all three forms of life.	1.92675e-121
CP025522.1\|AZY51196.1\|154097_155015_+\|nickel-transporter	gnl\|CDD\|225125	COG2215, COG2215, ABC-type uncharacterized transport system, permease component [General function prediction only].	3.53898e-54
CP025522.1\|AZY51183.1\|143174_143828_+\|octanoyltransferase	gnl\|CDD\|172825	PRK14349, PRK14349, lipoyl(octanoyl) transferase LipB.	4.45849e-137
CP025522.1\|AZY51186.1\|145623_145929_+\|RND-transporter	gnl\|CDD\|378683	pfam11604, CusF_Ec, Copper binding periplasmic protein CusF. CusF is a periplasmic protein involved in copper and silver resistance in Escherichia coil. CusF forms a five-stranded beta-barrel OB fold. Cu(I) binds to H36, M47 and M49 which are conserved residues in the protein.	5.42886e-21

>CP025522.1|AZY51188.1|147397_147937_-|HslU--HslV-peptidase-proteolytic-subunit
MEQFHATTIVCVRRGNRVALGGDGQVTLGNIVIKGTARKIRRLYHDKVLAGFAGATADAFTLQERFEAKLEKHQGHLMRAAVELTRDWRTDRVLRRLEAMLIVADAEHTLVLTGNGDVLEPEHGLAAIGSGGAYAQSAALALLRNTELPPETIVKQSLEIAGDLCIYTNQNHVIETLGG
>CP025522.1|AZY51187.1|146036_147371_-|HslU--HslV-peptidase-ATPase-subunit
MSASTMTPGEIVSELDKYIIGQNRAKRAVAVALRNRWRRQQVADPLRHEIHPKNILMIGPTGVGKTEIARRLAKLANAPFIKIEATKFTEVGYVGRDVDTIIRDLTEFSIKQTRELEMRRVRSHAEDAAEDRILDVLVPPARNAMGEPQRDDGNTTRQTFRKRLREGSLDDLEIEIDIAQATPQLDVMTPPGMEEMAEQLRGMFAGLARDKTKPKKIKVKEAFKLIIEEEAAKRVNEDDLRAAAIANVEQNGIVFLDEIDKIAARQESGGADVSRQGVQRDLLPLVEGTTVNTRYGMVRTDHILFIASGAFHLSRPSDLIPELQGRFPIRVELDSLSADDFVRILSETDASLVKQYTALLATEDVQLAFTEDGIKRLAELAFSVNERTENIGARRLYTVMEKLLEELSFDAGASSGQSVTIDAAYVDAQLSEAASSQDLARYVL
>CP025522.1|AZY51186.1|145623_145929_+|RND-transporter
MAFLRKHTMPAVMATAAAFVSLASPQVLAQTAQASGEVRRIDATAGTVTLKHDAIAALDLPAMTLVYQAAPALLTNIKPGDKVRFTATRQDGRYVVTAISK
>CP025522.1|AZY51185.1|144937_145501_-|ATP:cob(I)alamin-adenosyltransferase
MANRLSVITTRTGDDGSTGLGDGSRVPKDDPRIMALGDVDEFNSTLGLLRCEALPDEVSADLLTIQHDLFDMGAELCIPGHAALSDEQVAYLDARLAFYNAALPPLREFILPGGTRAAALAHLARTAARRAERSVIALAAQAAVNAPLCQYLNRSSDLMFVLARYLNQSQGQADIYWSSRHSRVSGA
>CP025522.1|AZY51184.1|143881_144877_+|lipoyl-synthase
MSTQLDASQPSNDVASPAAYDPTQKQKSQAKTARIPIKVIPAERLKKPEWIRVRAAAPGSRFYDIKRILREHNLHTVCEEASCPNIGECFGKGTATFMIMGDKCTRRCPFCDVGHGRPDPLDAQEPENLARTIAALKLSYVVITSVDRDDLRDGGAAHFVECITKIRELSPITRIEVLVPDFRGRLDRALAILNAGPPDVMNHNLETVPRLYKQARPGSDYLHSLKLLAEFKALHPDVPTKSGLMLGLGETDEEILEVMRDMRAHNVDMITIGQYLQPSEHHLPVLRYVHPDTFAMFEREAYAMGFSHAAVGAMVRSSYHADEQAHAAGVN
>CP025522.1|AZY51183.1|143174_143828_+|octanoyltransferase
MSMNVAWLSPGAAYADVWEAMKAFTASRGPATPDEIWLCEHAPVYTLGQAGLPQHVLNPADIAVVRSDRGGQVTYHGPGQIVVYCLFDLRRAGMYVRDYVALLEETAIAVLGRAGIVAQRKPGAPGVYVEQPGQTLAKIAALGIKIRKGCAYHGLSLNVAMDLTPFHGINPCGYEGLQTTDMASCGLSCSVHEVGQALADELVRRLSAYQGSLSSGE
>CP025522.1|AZY51182.1|142898_143171_+|DUF493-domain-containing-protein
MQIPPEDSLIEYPSDFPIKVMGKQHPEFAQTLTEVVLQFDPDFDPAKLEMRPSKGGNYLGLTFTVRATSREQLDALYRALHGHPMVSIVL
>CP025522.1|AZY51181.1|141980_142847_+|D-amino-acid-aminotransferase
MIPGMPGDSLVYLNGEYTRADQAKISVLDRGFIFGDGIYEVVPAYRGKAFRITEHLNRLERSLAAIRIAMPMDRAALTALIERLIAGATTPECMVYLQVTRGVYKRDHAFPAEAIAPTVFGMVTPMTPPSALQREQGVSVVSIKDERWLHCDIKSVSLLGNVLARQQAVEADADEVIQYRDGYLTEGSSSNIWIVRDGKLLAPPKNNLILEGIRYGLMAELAQEGGVVFEARPISRAEVETADEILITSATKEVLPVLKRDGQVVGDGKPGPVYRLLRAGYDARIAAL
>CP025522.1|AZY51180.1|140569_141829_+|D-alanyl-D-alanine-carboxypeptidase
MKTLSQSAFAPSVFSRRVISSAVLAVMLAASLPAAAQQQAPAAAAPATSTPAPATAAVATVGELAAVPAPTIAARAWIAIDVNSGQVLAASNPDQKVEPASLTKVMTAYVVFNALDEKRLTLDQQVPVSQHAWRTGGSRMFIEPRKPVTVDELIQGMIVQSGNDASVALAEAVGGSETAFAALMNEQAERLGMKGTHFMNATGLPDPQHITTVRDLATLATHLVSDHPEYYHYYKQKGFTYNKITQPNRNRLLWADPSVDGMKTGHTDSAGYCLISTALRGDRRVLTVLVGADSEATRAEESLKLLNWSFQNFDTVKLYDKSQPGLDARVWEGKAENVKLGPPNPVWLAVPRGKGNEIKPIAQRTDPLVAPLAKGQQVGTLEFTLDGKVLRTEPLVVQEDVERAGFFGRMTDTVKRWFH
>CP025522.1|AZY51179.1|139789_140437_+|alpha/beta-hydrolase
MSARTEILAFSGAAGRIDCAFDYPDGEPIGWALVLHPHPLHGGARDNKVVTTIARACANAGLIVVRPNFRGVGDSEGGFDRAVGETEDMLGLIPQIRQTLPELADAPWVLGGFSFGTAVAAQVYAMLAEQGAAPQALMLMGPAVARFQFRAVELPEDTLVVHGEVDEVVPLAEAMDWARPLKLPVVVIPGASHFFHGKLLSLRNLVAQRLKLALG
>CP025522.1|AZY51189.1|148218_148683_-|RNA-polymerase-binding-protein-DksA
MATKAVTKKSSKSTSDTAIDLPSEEELLAMPESDYMNERQLAFFKERLKQLEQDILANAGETTEHLRETQFVPDPADRATIEEEHALELRTRDRERKLLKKVQQAIVRIDSGEYGWCEETGEPIGVPRLLARPTATLSLEAQERREMRQKLYGD
>CP025522.1|AZY51190.1|148801_149899_-|GTP-binding-protein
MNTPRSLDKMVPVTILTGFLGAGKTTLLKRILTEFHGRRVAVIENEFGPESIDNDLLVQDSDEEIIELSNGCVCCTVRGDLMRTLNELRVKREAGQLSFERVIIETTGMANPGPVCQTFFMDDDIADYYRLDAVVTVVDAKHGMATLDAQEEAQKQVGFADRILVSKRDLVNDADYEALRARLLRINPRAPITPVHFGEVELKSIIDISGFNLNSILDIDPDFLADEHPDAKHAHDHDHDHHDHEHAGECGAHCDHAHHHHHHQHNDEIGAFVFRSNKPFDPARLEEFLGGVVQVYGPDLMRYKGILYMKGINRRMLFQGVHMMMGAEPGKPWTAAEKPSTKMVFIGRKLPQEIFTRGLEQCLVG
>CP025522.1|AZY51191.1|150239_150731_-|transcriptional-repressor
MSAPARTSRADAVGEQLRLAESLCAERGRRLTPIRRKVLELLLTHGRSLKAYELLDAMRAVHPGAAPPTVYRALDFLMDEGLIHRLDAVNAWTACHDAAGAPHDLLVVCTGCGAVAEISDPAMSRLLAERVAQTGFALATHETEIRALCPQCQKNAPAAHHHH
>CP025522.1|AZY51192.1|150912_151668_+|ABC-transporter
MGLGCQPVYLEPAHMGHVVTPAAIELESVTFGWRGQPAVRDVSGRFAPGCMTAIIGPNGAGKSTLVKGLAGVLAPMSGRLHRDSTSVAWLPQAAELDRDFPICVLDAVVLGGWRRIGALRAVDGDETARARLALRRVGLEQLAERPLQALSGGQLQRVLFARLLMQDAPVLVLDEPFAAVDGQTTRVLMALLCALQAEGRSIIAVLHDMALVKEYFAQALLLSGRVLAWGPTADVLSPERLAHGQLHLGYA
>CP025522.1|AZY51193.1|151664_152546_+|metal-ABC-transporter-permease
MTLWQALCAPFFDFSFMRRALAGAVALAFGAAPLGVFLVLRRMSLMGDAMSHAILPGVAAGYLLAGLSLGAMMAGGIVTGLVVALLSGLVTRLTSLREDASFAAFYLISLALGVLLVSLRGSNVDLLHVLFGTVLGLGDDALLLAGLVSTLTLFSLALIYRLLVAECFDPGFLRAAGGRGWLAHFGFLALVVINLVAGFQILGTLMVVGMMMLPALAARFWARRVAAQLPLAVVLAALASWCGLLASFHFDLAASPAIILAAGLIYLLSMVLGPQGGLRTRLRWPRPALSKEV
>CP025522.1|AZY51194.1|152548_153475_+|metal-ABC-transporter-substrate-binding-protein
MKLVWARCAAIAVLSILPAVAVWASPVKVVTSFSILQDMAREIGGPDVEVQTLVGPDGDAHGFEPSAADSRKLAGADLLVINGLGFEPWLPRLVEASGFKGREVRASDGVKPRAFAEALDHEDHDHGHDHHHDVQDPHAWQDLRNGMIYAQNIGRALEQLDPAHAAQYQQRTRAYVAKLEALQAKVEKTFAAIPAERRKVVSTHDAFAYFGEAYGVRFIPVAGLSTLSEPSASGFAEVVKRVKREHVPALFIENIGNPRLAEQIARETGAKVGGTLYSDALSAPGKPGATYLGMFEWNVQQLAAALQP
>CP025522.1|AZY51195.1|153435_154101_+|DUF1007-domain-containing-protein
MERAAIGRCLAALTLVILPISALAHPHMWVDAQAEVMFDDQGRVAALRQVWLFDEMFGAYATQGLPRAADGGLAEDTRKTMAIDWMKALGEPISHYFTRVTREGATLAFGAPRDAQVQWDGQRLSLAFTLPLAQPVAPGPQGLAIDVFDPTYFVAYAFDAPKAWRLSNAPANCRQTYRPPQPLDWKTMQQLAAIPSNVDTLPDELFAITKGLTHRNELRCP
>CP025522.1|AZY51196.1|154097_155015_+|nickel-transporter
MRSAARIVPWMLVFALALAAGQVWAQSHPFAVPEAGGSPWLAQISVWQSHFYRQLTGAVRAWRDDGSWLLVGLSFAYGVFHALGPGHGKAVISAFVLANHQSARNGAVLALLSALVQALVAIALVALLAAVFNVTAQVMNAGTRWLEMASYLMIVALGVWLLWTKALRPWLRPGRRHLHHAACGCGHVPPLSLMSGRLDWRRAWTAVVAVGLRPCSGALIVLVFALSQGLFAAGVVATLAMGLGTGLTVALLAMTAVWTRNALTNSSYLSPKWAARLRYGIESVAALAVLLLGLLLLGGQVAGAA
>CP025522.1|AZY51197.1|155110_157141_+|TonB-dependent-receptor
MRFTSRPSHAALAMAFAAAPVFAAEPEAVTLTPITISADPLGQNQNSTASPVTVLDGQALVERRQGTLGDTLNGLPGVHSDTFGAGASRPVIRGQTSPRVSVLSDGSSLLDASAISPDHAITIEPLLADRIEVLRGPATLRFGGGSIGGVVNVLDKRIPTEKPEGGLAAEAELRGATGTKERAGIIGITAGTDSFVVRVEGLKRRSSDYAVPHWSSGKLAGSYSESTQGSVGMSWIGPRGYIGLAFTHIESEYGLPGHNHEYEGCHPHGTHLHCGHHDHDHDHDDHAHEEGQVPYVRLRSNRTDLRAEYSDPLPGFSKLRLRGGFTDYQHDEIEGGQVGTTFKNQGFDTRLELEHKPWMGLRGVIGLQTAFSDFRAQGEEAFLPRSKTRSNGLFLLEEYRLNDWRFEAGARQDWQSISPEGGLKKSRLSGTSLSAAAIWDFAPSYSVALSLSRSQRMPSAQELYADGVHLATNTYEIGNAGLTRETSRNIDLTLRKHEGDTTFSLSAFHNRVNNYIYANTLDRFEDFRLIEYTQKDAEFVGIEGELKHQFTPILSAGVFGDYVRGKLTGGQGNLPRIPAARLGARANFKWQAWSGGLEYAYVFRQKDIASYESETPGYALVNAVLSYRFKAAGAQYDVYVRGNNLLDKLAYNHASFLSSVAPLPGRSVMLGVRMSY
>CP025522.1|AZY51198.1|157134_158112_-|tyrosine-recombinase-XerC
MSLLAPPLEDWLQHLQTQRRYSSHTLAAYRHDLESLAALATQAGLALQDLSVSHIRQQIARLHAQGLGPRSLARRLAAWRGFYQWWAPHIGLARNPVAGVRAPKAPRALPKALSVDQAQAMLDHAPAQLSTDPVGLRDHAISELLYSSGLRLSELVSLDTHYHRHTGSEEPAGWLNRAEAEVVVLGKGGKRRIVPVGSAALAALDKWLQARPTLLSAATPAADSYALFLGARGARISPRVVQLQLARLAQQAGVPAHVHPHVLRHSFASHVLQSAQDLRAVQELLGHANIATTQVYTRLDFQHLAKVYDQAHPRANRKPEDNSDQ

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Crispr_ID: CP025522_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025522_2

2063009-2063230

Orphan

Consensus_repeat	Method
AGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025522_2

>merge|CP025522|2|2063009-2063230|CRISPRCasFinder
GACGCGCGCCCTCGGGGGCAGCAAGCGCCCCGGGCGCACGCAGCGTGGGGGGCTTGCCCCGCCGCCGAGCCGTCCCGAGGCGGGCAGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTTGCCCCGCCGCCGGGCCGCCCCAAGGCGGGTAGCGCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT

>CP025522|2|2|2063009-2063230|CRISPRCasFinder
GACGCGCGCCCTCGGGGGCAGCAAGCGCCCCGGGCGCACGCAGCGTGGGGGGCT	TGCCCCGCCGCCGAGCCGTCCCGAGGCGGGCAGCGCCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTTGCCCCGCCGCCGGGCCGCCCCAAGGCGGG
TAGCGCCCCCTCGGGGGGCAGCAAGCGCGCCAAGCGCGCGCAGCGTGGGGGTTT

Protein	Signature genes	Signature genes Name	Protein_function
CP025522.1\|AZY52694.1\|2067414_2069016_+\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223651
CP025522.1\|AZY52696.1\|2070474_2070915_+\|carboxypeptidase-regulatory-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|379297
CP025522.1\|AZY52686.1\|2053940_2056868_-\|monovalent-cation/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237157
CP025522.1\|AZY52685.1\|2053594_2053939_-\|Na+/H+-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|236377
CP025522.1\|AZY52695.1\|2069576_2070344_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377554
CP025522.1\|AZY52697.1\|2071007_2071397_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226211
CP025522.1\|AZY54312.1\|2069086_2069575_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	unknown	unknown	gnl\|CDD\|239828
CP025522.1\|AZY52687.1\|2057254_2059876_-\|GTP-binding-protein	unknown	unknown	gnl\|CDD\|378817
CP025522.1\|AZY52691.1\|2064001_2065132_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235109
CP025522.1\|AZY52683.1\|2051491_2051974_-\|Na+/H+-antiporter-subunit-E	unknown	unknown	gnl\|CDD\|181598
CP025522.1\|AZY52693.1\|2066603_2067386_+\|DeoR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224268
CP025522.1\|AZY52682.1\|2051210_2051495_-\|K+/H+-antiporter-subunit-F	unknown	unknown	gnl\|CDD\|180435
CP025522.1\|AZY52688.1\|2059872_2060988_-\|DNA-repair-exonuclease	unknown	unknown	gnl\|CDD\|277319
CP025522.1\|AZY54311.1\|2063288_2063918_+\|DUF502-domain-containing-protein	unknown	unknown	gnl\|CDD\|225480
CP025522.1\|AZY52689.1\|2061028_2062330_-\|D-amino-acid-dehydrogenase-small-subunit	unknown	unknown	gnl\|CDD\|234819
CP025522.1\|AZY52681.1\|2050860_2051214_-\|cation:proton-antiporter	unknown	unknown	gnl\|CDD\|183670
CP025522.1\|AZY52690.1\|2062468_2062936_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|183009
CP025522.1\|AZY52698.1\|2071534_2072356_+\|CPBP-family-intramembrane-metalloprotease-domain-containing-protein	unknown	unknown	gnl\|CDD\|376806
CP025522.1\|AZY52692.1\|2065161_2066463_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	unknown	unknown	gnl\|CDD\|236486
CP025522.1\|AZY52684.1\|2051975_2053598_-\|monovalent-cation/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|237166

Protein	Function_ID	Function_description	E-value
CP025522.1\|AZY52694.1\|2067414_2069016_+\|FAD-dependent-oxidoreductase	gnl\|CDD\|223651	COG0578, GlpA, Glycerol-3-phosphate dehydrogenase [Energy production and conversion].	3.06994e-162
CP025522.1\|AZY52696.1\|2070474_2070915_+\|carboxypeptidase-regulatory-like-domain-containing-protein	gnl\|CDD\|379297	pfam13620, CarboxypepD_reg, Carboxypeptidase regulatory-like domain.	0.00316822
CP025522.1\|AZY52686.1\|2053940_2056868_-\|monovalent-cation/H+-antiporter-subunit-A	gnl\|CDD\|237157	PRK12648, PRK12648, putative monovalent cation/H+ antiporter subunit A; Reviewed.	0
CP025522.1\|AZY52685.1\|2053594_2053939_-\|Na+/H+-antiporter-subunit-C	gnl\|CDD\|236377	PRK09094, PRK09094, putative monovalent cation/H+ antiporter subunit C; Reviewed.	1.73102e-70
CP025522.1\|AZY52695.1\|2069576_2070344_+\|hypothetical-protein	gnl\|CDD\|377554	pfam05742, TANGO2, Transport and Golgi organisation 2. In eukaryotes this family is predicted to play a role in protein secretion and Golgi organisation. In plants this family includes Solanum habrochaites Cwp, which is involved in water permeability in the cuticles of fruit. Mouse Tango2 has been found to be expressed during early embryogenesis in mice. This protein contains a conserved NRDE motif. This gene has been characterized in Drosophila melanogaster and named as transport and Golgi organisation 2, hence the name Tango2.	4.09667e-82
CP025522.1\|AZY52697.1\|2071007_2071397_-\|hypothetical-protein	gnl\|CDD\|226211	COG3686, COG3686, Predicted membrane protein [Function unknown].	2.66067e-15
CP025522.1\|AZY54312.1\|2069086_2069575_+\|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein	gnl\|CDD\|239828	cd04336, YeaK, YeaK is an uncharacterized Echerichia coli protein with a YbaK-like domain of unknown function. The YbaK-like domain family includes the INS amino acid-editing domain of the bacterial class II prolyl tRNA synthetase (ProRS), and it's trans-acting homologs, YbaK, and ProX. The primary function of INS is to hydrolyze mischarged cysteinyl-tRNA(Pro)'s, thus helping ensure the fidelity of translation. Organisms whose ProRS lacks the INS domain express a single-domain INS homolog such as YbaK, ProX, or PrdX which supplies the function of INS in trans.	1.24304e-77
CP025522.1\|AZY52687.1\|2057254_2059876_-\|GTP-binding-protein	gnl\|CDD\|378817	pfam12128, DUF3584, Protein of unknown function (DUF3584). This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 943 to 1234 amino acids in length. This family contains a P-loop motif suggesting it is a nucleotide binding protein. It may be involved in replication.	7.21099e-13
CP025522.1\|AZY52691.1\|2064001_2065132_+\|hypothetical-protein	gnl\|CDD\|235109	PRK03187, tgl, transglutaminase; Provisional.	1.17046e-08
CP025522.1\|AZY52683.1\|2051491_2051974_-\|Na+/H+-antiporter-subunit-E	gnl\|CDD\|181598	PRK08965, PRK08965, putative monovalent cation/H+ antiporter subunit E; Reviewed.	1.29263e-57
CP025522.1\|AZY52693.1\|2066603_2067386_+\|DeoR-family-transcriptional-regulator	gnl\|CDD\|224268	COG1349, GlpR, Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism].	3.55216e-87
CP025522.1\|AZY52682.1\|2051210_2051495_-\|K+/H+-antiporter-subunit-F	gnl\|CDD\|180435	PRK06161, PRK06161, putative monovalent cation/H+ antiporter subunit F; Reviewed.	2.20479e-36
CP025522.1\|AZY52688.1\|2059872_2060988_-\|DNA-repair-exonuclease	gnl\|CDD\|277319	cd00840, MPP_Mre11_N, Mre11 nuclease, N-terminal metallophosphatase domain. Mre11 (also known as SbcD in Escherichia coli) is a subunit of the MRX protein complex. This complex includes: Mre11, Rad50, and Xrs2/Nbs1, and plays a vital role in several nuclear processes including DNA double-strand break repair, telomere length maintenance, cell cycle checkpoint control, and meiotic recombination, in eukaryotes. During double-strand break repair, the MRX complex is required to hold the two ends of a broken chromosome together. In vitro studies show that Mre11 has 3'-5' exonuclease activity on dsDNA templates and endonuclease activity on dsDNA and ssDNA templates. In addition to the N-terminal phosphatase domain, the eukaryotic MRE11 members of this family have a C-terminal DNA binding domain (not included in this alignment model). MRE11-like proteins are found in prokaryotes and archaea was well as in eukaryotes. Mre11 belongs to the metallophosphatase (MPP) superfamily. MPPs are functionally diverse, but all share a conserved domain with an active site consisting of two metal ions (usually manganese, iron, or zinc) coordinated with octahedral geometry by a cage of histidine, aspartate, and asparagine residues. The MPP superfamily includes: Mre11/SbcD-like exonucleases, Dbr1-like RNA lariat debranching enzymes, YfcE-like phosphodiesterases, purple acid phosphatases (PAPs), YbbF-like UDP-2,3-diacylglucosamine hydrolases, and acid sphingomyelinases (ASMases). The conserved domain is a double beta-sheet sandwich with a di-metal active site made up of residues located at the C-terminal side of the sheets. This domain is thought to allow for productive metal coordination.	1.5023e-32
CP025522.1\|AZY54311.1\|2063288_2063918_+\|DUF502-domain-containing-protein	gnl\|CDD\|225480	COG2928, COG2928, Uncharacterized conserved protein [Function unknown].	4.07046e-27
CP025522.1\|AZY52689.1\|2061028_2062330_-\|D-amino-acid-dehydrogenase-small-subunit	gnl\|CDD\|234819	PRK00711, PRK00711, D-amino acid dehydrogenase.	0
CP025522.1\|AZY52681.1\|2050860_2051214_-\|cation:proton-antiporter	gnl\|CDD\|183670	PRK12671, PRK12671, putative monovalent cation/H+ antiporter subunit G; Reviewed.	1.27927e-52
CP025522.1\|AZY52690.1\|2062468_2062936_+\|transcriptional-regulator	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	6.09021e-63
CP025522.1\|AZY52698.1\|2071534_2072356_+\|CPBP-family-intramembrane-metalloprotease-domain-containing-protein	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	1.4633e-10
CP025522.1\|AZY52692.1\|2065161_2066463_+\|UDP-N-acetylglucosamine-1-carboxyvinyltransferase	gnl\|CDD\|236486	PRK09369, PRK09369, UDP-N-acetylglucosamine 1-carboxyvinyltransferase; Validated.	5.62583e-104
CP025522.1\|AZY52684.1\|2051975_2053598_-\|monovalent-cation/H+-antiporter-subunit-D	gnl\|CDD\|237166	PRK12666, PRK12666, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0

>CP025522.1|AZY52690.1|2062468_2062936_+|transcriptional-regulator
MRELDRTDRKILDILQRNGRISITELAEQVNLSATPCSERVKRLERDGVIAGYHARLNPVALGKNLLVFLEIRLSAKSGDVFDKVKKELMYVPEVMECHLVSGDFDYLVKARLTEMAEYRRLLGEILKRLPASAESHSYVVMEEIKESLYLPLDP
>CP025522.1|AZY52689.1|2061028_2062330_-|D-amino-acid-dehydrogenase-small-subunit
MHIIVLGSGVIGTTTAFYLARQGAQVTVLDRQPGPADETSYANAGQVSPGYSTPWAAPGIPLKALKWLFQKHAPLALRADGSLWQWRWMAAMLANCTADRYTVNKERMLRLAEYSRDCLRELRDSTGIQYEQRTQGTLQLFRTEAQLEAARRDIAVLEEVGVPYEVLDRDALPGAEPALARSLHKLAGGLRLPNDETGDCRLFTRALAEAAANLGARFHFNQAVEGMVLENGRVTGVRVGGEPMQADAYVAAFGSYTRGFLGPLGLDLPVYPVKGYSLTIPMRDAQASPVSTVLDETYKIAITRFDQRIRVGGMAELAGFDLTLRPQRRATLEMVVQDLFPGCGDVAAAEFWTGLRPMTPDSTPIVGATRYDNLFLNTGHGTLGWTMACGSGKLMADIVMGHQPAIRADDLALSRYQGKASPAGGLDLKQGRA
>CP025522.1|AZY52688.1|2059872_2060988_-|DNA-repair-exonuclease
MSSRPPSFLHTADWQIGRQYGQFDDDDAAVLAEARLEAVARLAAIARERGVCAVLVAGDVFDTQAVSDRLIRRLFGALEGYAGPWVMIPGNHDAALAESVWTRARKLACIPANVHLALEPGVVLLPELAVLAAPLTQRHTYDDVTRGFDSLETPAGLPRVGLAHGSVTGRLPDSADAANPIAPDRADTARLDYLALGDWHGCLRVTDRCWYAGTPETDRFRGNEPGYALHVRLGGAQPEVEAVRVGRYRWQAWDVDLELPADAEMLEARLQTLQADDVLRLTLRGRVSLAAWERLTQSIGRAEAHLRALRLEPDALSLEPDDADFSLLDGGGYLSDVAARLRAMQADPQTAPVAREAMQLLLRMAREEGGA
>CP025522.1|AZY52687.1|2057254_2059876_-|GTP-binding-protein
MRLHRIALQEFRKFREPVVLDGLDAGLNIIAGPNEAGKSTYAMALRAAFLERYNTSKVADLAPYGMAGARPTVCIEFEHGGRHYALQKHFLHKARCELRIDGSRLEGEEAEQTLARLLGFEIPGRGQSKPEHAGVPGLLWITQGSGQDIAEPARHADGQVREALTQISGELASTDGDRLFAQVQEARAALLDARGGKPKGVYKAAEEAYVRLGEAREALLRERAELDADVDRLAQWRAEYERAEREAPWVALEQQAAQARAQLQALAIEQERVQRLRQEANEAARLAQALRDQAARDRRDEEELRHLHAQSQAAARELAQHNDTGARMAQARVHAEAALQSARAALEAVQEQQRLRQARDWLRQACAEEERLGAALAAVQTGESQVAALLAEWQEVRIDAQAVTALRQLQREEEALRLRLEAGATRIRHLLDAGVSLSLGQQMLQGEGETLLAEAAELSLPGLGRLIIEPGGQDLPALRRERAEVQARLEQGLTALAAGSLAQAEARLAHATQLERELAQAKQALHALAPQGGAALQAALAQARQTRERLQAQLHGADLGGEADLDARLPAAKDAVQRTTAAAQAAERQAREADAGQAQASSRAALLQEQYQSRQSAFDDAAQAARRALRAAQFAQAEQTEQERALQAREAESALAAHRPELLKQDAERYARSAELARQAQQERHARLLSLQGKLEQAGAQAVGERLAETEAAWQRAGRLRADYERRAAALDLLWRLLGEQRDTATRRLLRPLSERLAHYLALLFPGADLSLDEQLQPLALVRGGTHDALEALSFGTREQLGLLARLAYADLLREAGRPTLLVLDDALVHADSRRRDLVKRALFDAATRHQILLFTCHADAWQDMGVVLRELP
>CP025522.1|AZY52686.1|2053940_2056868_-|monovalent-cation/H+-antiporter-subunit-A
MSLILILALPFVGSLCAALLPANARNAEAWLAGLVALGSTLLVASLYPQIAAGEVIRVDIPWAPALGLQFALRMDGFAWLFSLIVSLIGTLVVLYARYYMSPQDPVPRFFSFFQAFMAAMLGVVLSGNLIQLVLFWEMTSLASFMLIAYWHHRADARRGARMALTVTGAGGLCLLGGVLLLGHIVGSYDMDVVLRAGDIVRAHPWYPAALALVALGALTKSAQFPFQFWLPNAMAAPTPVSAYLHSATMVKAGVFLLARFWPLLAGTDAWFWIIGGAGLISLVLGAYAAIFQQDMKGVLAYSTISHLGLITLLLGLNSPLALVAAVFHMVNHAIFKASLFMAAGIVDHETGTRDISRLSGLYSAMPLTATMAMVAAASMAGVPLLNGFLSKEMFFAETTFITGDRFLEYGLPLMATIAGAFSVAYSLRFIVQVFFGPPATDLPRAPHEPPRWMLLPSALLVLLCLVIGVLPGLTVGPVLHIAAQSILGPGMPQFSLAVWHGFNLPLVMSLVAMSAGVLLYLVLRAHQAANPGKVPFIYRLDGRRTFEYLLEVSAMGARWLLRRASSPRLQVQMLVIVSATLLVAWMPLRVSGWLDGMGPRTPADPVFLILWLAGGACALGAAYQAKYHRLASLTLSGGAGIVTCLTFVWFSAPDLALTQLAVEVVTVVLLLLGLRWLPRRIVSESDDERPDWKARARRTRDLGLAALAGISMSAITYAMLTRPVGDTISSFFVEQALPEGGGTNVVNVLLVDFRGFDTLGEITVLGIVALTVYALLRRFRPAQESIEMPRQQREQDGLEPGQPPASPDVKAPLPQGVMRIPAVLVRLLLPVAVLISVYLLLRGHNLPGGGFVGGLVMATSVILQYMVGGVYWVESRSRLNPQRWVGLGLLAAGAAAMSSWFALRPFMSALAWDVHVPLIGEVHLSSVLLFDLGVYMLVVGATVLVLVALAHQSLRAQRKLVSEAQAEAEAAMKGV
>CP025522.1|AZY52685.1|2053594_2053939_-|Na+/H+-antiporter-subunit-C
MEWIYAVAVGVLVGSGVWLLLRPRTFQVIMGLSLISYAVNLFIFGMGRLTVGRPPVVDPLAPPDPGAYADPLPQALVLTAIVIGFATTALFLVVLLASRGFRGTDHVDGREPES
>CP025522.1|AZY52684.1|2051975_2053598_-|monovalent-cation/H+-antiporter-subunit-D
MIDWQQHLPIYPIAVPLVAGALMLLLADTRRRERAFIAVASTLVQLLSAIALLALAAGAYDIWPDGIGVYLPGDWPAPFGIVLVVDRLAAIMLTLTATLGLATLVYSLARWDRAGVHFHSLFQFLLMGLNGAFLTGDLFNLFVFFEVLLAASYGLLLHGSGGARVSAGLQYIAVNLVASFLLLISIALIYGVTGTLNMADLAVRAGQLVGSDRRLFEAGAAILGVAFLVKAGAWPLNFWLVSGYGSACPPVAAMFSIMTKVGIYSLLRIGSLLLPTGAPAAFSLDWMFAVGLATLIFGGVGILASQQLEKLVGYCVIVSAGTLLTALGMPGVTLTGPALFYLISSVLGTSAFFLLVELIERTRSFGANVLAVTMDNFDLDDPASRSDDVVGVAIPAAMAFLGLAFVACALLVTGLPPLSGFVAKFSLLSAAVSAANTSAPPMDAWLLVAGVLLSGLAGLIALGRTGIRVFWSSEDRSTPRLRLLEAGPVAVLILLCVALAAGAGPVSAYLDAAAQSLDAPADYVNAVLSKQPVRVLGGGH
>CP025522.1|AZY52683.1|2051491_2051974_-|Na+/H+-antiporter-subunit-E
MRDVFSKMLLPLGMFFLWLLLNQSLSLGQIAFGAALAIWLGWASTRLRPLKSRPRRFYLLPGLFCRVLIDIIRSNWAVTLLIWRPRAEMSPGFLTIPLTMRDPHGIAMLACILTYTPGTVLVDISDSKGLTLHVLDLQNEDEWVALVKGRYERTLMEVFE
>CP025522.1|AZY52682.1|2051210_2051495_-|K+/H+-antiporter-subunit-F
MMDVLLYWSASFALICFAVGLGCAVIRVLRGPTAQDRVLGLDAVYIQAMLIMLVFGIRVGTGVYFDIALLIALFGFVGSTAMAKFLLRGEVIEP
>CP025522.1|AZY52681.1|2050860_2051214_-|cation:proton-antiporter
MIPADIPWWIAVPASLLLIAGGMLALTGAVGLLRFGHFYARIHAPTLANTLGACSVLLASMLVFSYQASRPVFHEVVIVILLVLTSPVTGMLLMRAAVYRNRDAEVGPNSPHNSSEP
>CP025522.1|AZY54311.1|2063288_2063918_+|DUF502-domain-containing-protein
MTRRLYRYFFLGLITILPIALTLYLLFVFLAWTEAIALTFVRPFIGDFYIPGLGLLLGILVILAIGYLVSKERVQRLLLLVEMPFTNLPVIKSIYSSIKSFADYFSSGSKATSQQVVILRIPGQALELVGLVTRRGMEGLPAGFLPGERVAVYLPMGYMIGGYTVFVPTEWVVPINMSVEEAMRSSLIAWMARAEHQTPPTPPHTDQPS
>CP025522.1|AZY52691.1|2064001_2065132_+|hypothetical-protein
MQHNDVSSFRDAGGIRIFPSSPAALSQAQAFLYSRDLQAYATSRLAPDGAVCIQALPDFARQHLPQGDTTGLVHDLKLDTAGSDAALETEIVLAMLACPVAFPFPDVAELEAALRIRRNIVRAATRTALAFDTEKAERPADYWAYDEATGFTIVPGRSLIDGLTLATQPQVSGQTYSFSCYRATEYVTVLGIALEVRDSHPALYTRLQRQWETRAVMSGRFHEAFLREYGSMDAPLPPRFYVPGDRLWFRNPDAHSSNVEGYEGSWVFYLGSGLFNNFWKRDQPYTLTHKCLEIFHWRDGAQVDAGGKLFINEDIVEARVRETQADPAARQAVLERMLRIRDPQGVYAEGGCIDATRECARWVLPGHAEIALPEFP
>CP025522.1|AZY52692.1|2065161_2066463_+|UDP-N-acetylglucosamine-1-carboxyvinyltransferase
MSNLIVHGGTPLSGKIVPSANKNAVLPILCATLLTDQPLRLIGVPEITDVKKILDIFRMLGSEVSVDYATGVLELHHRDTCFDPAQHHLPEEMRSSIMLVPPLLARFGVARLENDVKGCTLGVREIDPHVEVFERFGARVERAPDSLIARADGQMRANQHWLDYASVTTTENFALCAASAAGVSTLVNAASEPHVQEFCRFLEMLGVPIEGIGTSHLRIEGGRKLKGGEFRFDEDFHEIATFLALGAITGGSIIVKNSAPAQFPLIDRTFAKFGVEVEHRDGWSQAHSDGPLRVRRPFTQNILTKVEAAPWPYLPVDLLPIFIALGVRAEGSAMFWNKVYDGAMGWSVELSKFGAHVFLSDPHRLITFGGLPLSPAKVESPYIIRVAIALLMLAASIEGRSEITNALPIRRAHPNFVENLCSVGARVEWTHGD
>CP025522.1|AZY52693.1|2066603_2067386_+|DeoR-family-transcriptional-regulator
MLFYHKTMTLNPRQSALLEQVRSQGSASIEELARAFDVTLQTVRRDVNLLAEAGMLSRFHGGVRSEPSTIENITYRQRQGLHAEGKRRIAEAVARQVPDGCSLLINIGTTTEAIARALLQHRGLRVITNNLHVADILSDNPDCEVIVAGGVVRSRDRGITGEATIDFIRQFKVDIGLIGISGIEADGTLRDYDFREVLVARTIIEQSREVWLAADSSKFQRQAMVELAPISRISRFFTDAEPAPQLAQVLHDAGVHVSVS
>CP025522.1|AZY52694.1|2067414_2069016_+|FAD-dependent-oxidoreductase
MNSTTSAAMPPRADLLARMDAADSWDVIVIGGGATGLGTAVDAAARGFRTLLIEAADFAKGTSSKATKLVHGGVRYLAQGNISLVREALHERGLLSRNAPHLAWPLGFVVPAYTLLDQPFYGIGLKMYDLLAGKLNLASSRLLSRIETLRHASTLAPVVQGKRLRGGVLYYDGQFDDARLAVALMRTLFDLGGTAVNYVRVTGLTRDAQGKIDGVETEDTLSGARHTLHAKCVVNATGVWVDAVRRMDDPAAQAIVSPSQGVHLTLPRDFLPGDDAILVPKTDDGRVLFMVPWNGHTIVGTTDTARQDLPTDPRPLPGEVDFILETAGRYLTRQPTRADVTSVWAGLRPLVKASGDASTKSLSREHTILVAQSGLITVTGGKWTTYRRMAQDVVDTAIEKRLLPQAACRSAELPLHGAPAPGAGLLAPQGTPDSYYGTDLPVLRALPGADRILVQASGLSEAHVRYAARYELARTVEDVLARRNRALFLDAAAAQAAAPEVARILAEELGHDADWQTRTLADFQAIAESFKLA
>CP025522.1|AZY54312.1|2069086_2069575_+|YbaK/prolyl-tRNA-synthetase-associated-domain-containing-protein
MDVFQQLQNLLSAQAADFRLLRHPAAGKSVEVAAIRGTEVSQGAKALVCRVKISAKQRKHVLAVFPADGQADLDAIALAAGGKKAALATHELARELTGCEIGAIPPFSFNTELHLIVDPSLRQRHDEIVFNAGRLDASIIMRTEDYFRIAQPELARFVRTAD
>CP025522.1|AZY52695.1|2069576_2070344_+|hypothetical-protein
MCLAVLALNALPGLPVLIAANRDEFHARPAAPAAAWPSGIYAGRDLLAGGTWMGAARNGHYAILTNYREVGRHLPDAPSRGKLAEHFLAGDLPARDYIASVAREGGRYNGFNLIVGDRQDAWYYGNRGGEPRLLKDELYALSNHLLDSPWPKSLRLKHAVRQTFEHGLDLPALFAALGDRTVAEDASLPDTGLPRERERLLSSPFIVSADYGTRCSTVLLWRANGQGELVERRFDSAARLTGETALHFHLPGTVS
>CP025522.1|AZY52696.1|2070474_2070915_+|carboxypeptidase-regulatory-like-domain-containing-protein
MKKIHERSLLAALLMAGAMTVSGAALAQDLPLLPQTQQQGDVQFLSGGIGDGQSGAIKAAASKYRLMLTFVQRGPGGVGEYLADIPVDIVNAKGQSVLKTVAQGPFLLANLPAGSYTVKASSNGAEKSTRVTIGKSGTARAIFEWR
>CP025522.1|AZY52697.1|2071007_2071397_-|hypothetical-protein
MIHIVALMVAAALLPLVASISSKLGGEGFDNREPRLWLQAQKGWRARANAAQANSYEALPFFYAAVLFALYAQAPLAHLAVLMGAWVTVRLVYLALYVGGYGSLRSLSWVAAFALNLLILYAGLQAAGG
>CP025522.1|AZY52698.1|2071534_2072356_+|CPBP-family-intramembrane-metalloprotease-domain-containing-protein
MTDSLTWIFIFCAYALLWWPAARKAGLALLICGLGLAAALSALTLPSLLAFALLIASGWLVRGTRQAWLGHLIFIITAIALALHLLPGFHNPLIIDSTALKPGSTPMRLYFNLDKPLIAWWVLLVMAPPFLRFGWQDSLRTGLQAGIAAAICCLGLAWVLGALAWSPGWPSQGWPWLLNNALLVTMAEEAFFRAYIQRGLALRLGPAPACLLAALLFGLAHFAGGPALIGLAALAGLFYGWAFHRGGLAAAVLAHLLLNTLHLALFSYPALAH

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Crispr_ID: CP025522_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025522_3

3560672-3560893

Orphan

Consensus_repeat	Method
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025522_3

>merge|CP025522|3|3560672-3560893|CRISPRCasFinder
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCGGGGGGCAGCAAGCAGGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCAGAGAACAGCAAGCAAGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC

>CP025522|3|3|3560672-3560893|CRISPRCasFinder
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC	GGGGGGCAGCAAGCAGGCGACAAGCCTGCGCAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTCAGAGAACAGCAAGCAAGCGACAAGCCTGCG
CAGCGTGGGGGCAAGGACCGCCGACGGGCCGCCCCTAGGCGGGACAGCCCCCTC

Protein	Signature genes	Signature genes Name	Protein_function
CP025522.1\|AZY53904.1\|3559134_3560592_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-B	unknown	unknown	gnl\|CDD\|235489
CP025522.1\|AZY53906.1\|3561783_3562566_-\|exodeoxyribonuclease-III	unknown	unknown	gnl\|CDD\|197336
CP025522.1\|AZY53900.1\|3555047_3555932_-\|rod-shape-determining-protein-MreC	unknown	unknown	gnl\|CDD\|237560
CP025522.1\|AZY53895.1\|3548873_3550364_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|279307
CP025522.1\|AZY53911.1\|3567396_3568008_-\|methionine-biosynthesis-protein-MetW	unknown	unknown	gnl\|CDD\|273958
CP025522.1\|AZY53908.1\|3564446_3565085_-\|trimeric-intracellular-cation-channel-family-protein	unknown	unknown	gnl\|CDD\|225415
CP025522.1\|AZY53914.1\|3571283_3571802_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|381213
CP025522.1\|AZY53896.1\|3550374_3551427_+\|lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|376860
CP025522.1\|AZY53907.1\|3563057_3564395_+\|NADP-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|181834
CP025522.1\|AZY53902.1\|3557287_3557596_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-C	unknown	unknown	gnl\|CDD\|178810
CP025522.1\|AZY53912.1\|3568004_3569252_-\|homoserine-O-acetyltransferase	unknown	unknown	gnl\|CDD\|234678
CP025522.1\|AZY53901.1\|3556016_3557060_-\|rod-shape-determining-protein	unknown	unknown	gnl\|CDD\|237562
CP025522.1\|AZY53910.1\|3566068_3567301_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|183369
CP025522.1\|AZY53898.1\|3552596_3554495_-\|penicillin-binding-protein-2	unknown	unknown	gnl\|CDD\|274573
CP025522.1\|AZY53909.1\|3565212_3566067_+\|universal-stress-protein	unknown	unknown	gnl\|CDD\|238182
CP025522.1\|AZY53903.1\|3557599_3559132_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-A	unknown	unknown	gnl\|CDD\|234572
CP025522.1\|AZY53897.1\|3551463_3552600_-\|rod-shape-determining-protein-RodA	unknown	unknown	gnl\|CDD\|274033
CP025522.1\|AZY53905.1\|3561022_3561685_-\|orotate-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|234771
CP025522.1\|AZY53899.1\|3554506_3555067_-\|rod-shape-determining-protein-MreD	unknown	unknown	gnl\|CDD\|225444
CP025522.1\|AZY53913.1\|3569663_3571250_+\|glutamate--cysteine-ligase	unknown	unknown	gnl\|CDD\|235001

Protein	Function_ID	Function_description	E-value
CP025522.1\|AZY53904.1\|3559134_3560592_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-B	gnl\|CDD\|235489	PRK05477, gatB, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB.	0
CP025522.1\|AZY53906.1\|3561783_3562566_-\|exodeoxyribonuclease-III	gnl\|CDD\|197336	cd10281, Nape_like_AP-endo, Neisseria meningitides Nape-like subfamily of the ExoIII family purinic/apyrimidinic (AP) endonucleases. This subfamily includes Neisseria meningitides Nape and related proteins. These are Escherichia coli exonuclease III (ExoIII)-like AP endonucleases and belong to the large EEP (exonuclease/endonuclease/phosphatase) superfamily that contains functionally diverse enzymes that share a common catalytic mechanism of cleaving phosphodiester bonds. AP endonucleases participate in the DNA base excision repair (BER) pathway. AP sites are one of the most common lesions in cellular DNA. During BER the damaged DNA is first recognized by DNA glycosylase. AP endonucleases then catalyze the hydrolytic cleavage of the phosphodiester bond 5' to the AP site, and this is followed by the coordinated actions of DNA polymerase, deoxyribose phosphatase, and DNA ligase. If left unrepaired, AP sites block DNA replication, and have both mutagenic and cytotoxic effects. AP endonucleases can carry out a variety of excision and incision reactions on DNA, including 3'-5' exonuclease, 3'-deoxyribose phosphodiesterase, 3'-phosphatase, and occasionally, nonspecific DNase activities. Different AP endonuclease enzymes catalyze the different reactions with different efficiences. Many organisms have two AP endonucleases, usually one is the dominant AP endonuclease, the other has weak AP endonuclease activity; for example, Neisseria meningitides Nape and NExo. Nape, found in this subfamily, is the dominant AP endonuclease. It exhibits strong AP endonuclease activity, and also exhibits 3'-5'exonuclease and 3'-deoxyribose phosphodiesterase activities.	1.37289e-138
CP025522.1\|AZY53900.1\|3555047_3555932_-\|rod-shape-determining-protein-MreC	gnl\|CDD\|237560	PRK13922, PRK13922, rod shape-determining protein MreC; Provisional.	8.29804e-92
CP025522.1\|AZY53895.1\|3548873_3550364_+\|hypothetical-protein	gnl\|CDD\|279307	pfam00939, Na_sulph_symp, Sodium:sulfate symporter transmembrane region. There are also some members in this family that do not match the Prosite motif, and belong to the subfamily SODIT1.	2.5303e-116
CP025522.1\|AZY53911.1\|3567396_3568008_-\|methionine-biosynthesis-protein-MetW	gnl\|CDD\|273958	TIGR02081, conserved_hypothetical_protein, methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized. [Amino acid biosynthesis, Aspartate family].	6.65817e-109
CP025522.1\|AZY53908.1\|3564446_3565085_-\|trimeric-intracellular-cation-channel-family-protein	gnl\|CDD\|225415	COG2860, COG2860, Predicted membrane protein [Function unknown].	1.85822e-75
CP025522.1\|AZY53914.1\|3571283_3571802_+\|hypothetical-protein	gnl\|CDD\|381213	cd19438, lipocalin_Blc-like, bacterial lipocalin Blc, Arabidopsis thaliana temperature-induced lipocalin-1, and similar proteins. Escherichia coli bacterial lipocalin (Blc, also known as YjeL) is an outer membrane lipoprotein involved in the storage or transport of lipids necessary for membrane maintenance under stressful conditions. Blc has a binding preference for lysophospholipids. This group includes eukaryotic lipocalins such as Arabidopsis thaliana temperature-induced lipocalin-1 (TIL) which is involved in thermotolerance, oxidative, salt, drought and high light stress tolerance, and is needed for seed longevity by ensuring polyunsaturated lipids integrity. This group belongs to the lipocalin/cytosolic fatty-acid binding protein family which have a large beta-barrel ligand-binding cavity. Lipocalins are mainly low molecular weight extracellular proteins that bind principally small hydrophobic ligands, and form covalent or non-covalent complexes with soluble macromolecules, as well as membrane bound-receptors. They participate in processes such as ligand transport, modulation of cell growth and metabolism, regulation of immune response, smell reception, tissue development and animal behavior. Cytosolic fatty-acid binding proteins, also bind hydrophobic ligands in a non-covalent, reversible manner, and have been implicated in intracellular uptake, transport and storage of hydrophobic ligands, regulation of lipid metabolism and sequestration of excess toxic fatty acids, as well as in signaling, gene expression, inflammation, cell growth and proliferation, and cancer development.	2.27722e-75
CP025522.1\|AZY53896.1\|3550374_3551427_+\|lactate-dehydrogenase	gnl\|CDD\|376860	pfam02615, Ldh_2, Malate/L-lactate dehydrogenase. This family consists of bacterial and archaeal Malate/L-lactate dehydrogenase. L-lactate dehydrogenase, EC:1.1.1.27, catalyzes the reaction (S)-lactate + NAD(+) <=> pyruvate + NADH. Malate dehydrogenase, EC:1.1.1.37 and EC:1.1.1.82, catalyzes the reactions: (S)-malate + NAD(+) <=> oxaloacetate + NADH, and (S)-malate + NADP(+) <=> oxaloacetate + NADPH respectively.	1.36949e-114
CP025522.1\|AZY53907.1\|3563057_3564395_+\|NADP-specific-glutamate-dehydrogenase	gnl\|CDD\|181834	PRK09414, PRK09414, NADP-specific glutamate dehydrogenase.	0
CP025522.1\|AZY53902.1\|3557287_3557596_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-C	gnl\|CDD\|178810	PRK00034, gatC, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC.	1.36957e-31
CP025522.1\|AZY53912.1\|3568004_3569252_-\|homoserine-O-acetyltransferase	gnl\|CDD\|234678	PRK00175, metX, homoserine O-acetyltransferase; Provisional.	0
CP025522.1\|AZY53901.1\|3556016_3557060_-\|rod-shape-determining-protein	gnl\|CDD\|237562	PRK13927, PRK13927, rod shape-determining protein MreB; Provisional.	0
CP025522.1\|AZY53910.1\|3566068_3567301_-\|MFS-transporter	gnl\|CDD\|183369	PRK11902, ampG, muropeptide transporter; Reviewed.	0
CP025522.1\|AZY53898.1\|3552596_3554495_-\|penicillin-binding-protein-2	gnl\|CDD\|274573	TIGR03423, pbp2_mrdA, penicillin-binding protein 2. Members of this protein family are penicillin-binding protein 2 (PBP-2), a protein whose gene (designated pbpA or mrdA) generally is found next to the gene for RodA, a protein required for rod (bacillus) shape in many bacteria. PBP-2 acts as a transpeptidase for cell elongation (hence, rod-shape). [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0
CP025522.1\|AZY53909.1\|3565212_3566067_+\|universal-stress-protein	gnl\|CDD\|238182	cd00293, USP_Like, Usp: Universal stress protein family. The universal stress protein Usp is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. Usp enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae Usp reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, athough Usp lacks ATP-binding activity.	1.47285e-26
CP025522.1\|AZY53903.1\|3557599_3559132_+\|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-A	gnl\|CDD\|234572	PRK00012, gatA, Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatA.	0
CP025522.1\|AZY53897.1\|3551463_3552600_-\|rod-shape-determining-protein-RodA	gnl\|CDD\|274033	TIGR02210, Rod_shape-determining_protein_RodA, rod shape-determining protein RodA. This protein is a member of the FtsW/RodA/SpoVE family (pfam01098). It is found only in species with rod (or spiral) shapes. In many species, mutation of rodA has been shown to correlate with loss of the normal rod shape. Note that RodA homologs are found, scoring below the cutoffs for this model, in a number of both rod-shaped and coccoid bacteria, including four proteins in Bacillus anthracis, for example. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan, Cellular processes, Cell division].	2.39417e-155
CP025522.1\|AZY53905.1\|3561022_3561685_-\|orotate-phosphoribosyltransferase	gnl\|CDD\|234771	PRK00455, pyrE, orotate phosphoribosyltransferase; Validated.	2.96785e-83
CP025522.1\|AZY53899.1\|3554506_3555067_-\|rod-shape-determining-protein-MreD	gnl\|CDD\|225444	COG2891, MreD, Cell shape-determining protein [Cell envelope biogenesis, outer membrane].	2.98743e-19
CP025522.1\|AZY53913.1\|3569663_3571250_+\|glutamate--cysteine-ligase	gnl\|CDD\|235001	PRK02107, PRK02107, glutamate--cysteine ligase; Provisional.	0

>CP025522.1|AZY53904.1|3559134_3560592_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-B
MEWEIVIGLETHVQLATESKIFSGSSTRFGAAPNTQANEVDLALPGSLPVMNRGAAERAILFGLAIGAKIAPRSVFARKNYFYPDLPKGYQISQYELPVVVGGTLSFFVGEEEKTINLTRAHLEEDAGKSLHDEFHLANGAPASGIDLNRAGTPLLEIVTEPEMRSAAEAVAYARALHGLVVWLGICDGNMQEGSFRCDANVSVRPRGQVEFGTRAEIKNVNSFRFLERAIQYEVRRQIELIEDGGKVVQETRLYDAERDETRSMRSKEDAHDYRYFPDPDLPTLVIGQDWVEAVRATMPELPSAMRARFEADFGLPAYDAAQLTISRKLAAYFEAVARALPAGQAKLAANWIMGEVTATLNREEKDIADTPVQAAQLAALINRIIDGTISNKIARDVFAAMWAGENGGEPDAIIEARGLKQISDTGTISAMIDEVLAANPAIVAEYRAGKEKAFNSLVGQIMKAARGKANPQQVNDLLKAKLSA
>CP025522.1|AZY53903.1|3557599_3559132_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-A
MSQSALHTEFGDIAGLRAALAERRVSAVELAESGLAAAQAAAGLNAFLHIDPELTLVQARAADAALAAGTAGPLAGIPIAHKDAFVTRGWRSTAGSKMLRDYLSPFDATVVERLQAAGAVSLGKLNCDEFAMGSGNENSAFGPARNPWDLAAVPGGSSGGSAAAVAARLVAGATGTDTGGSVRQPAALCGVSGIKPTYGTVSRYGMIAFGSSLDQAGPLAPSSRDLLELLDVMSGFDPRDATSLERCDDAANAPGRIRAAFDAAQNGYQAAGSQPLKGLRIGVPAEFFGAGLTPDVAAAVEAALRQFEALGAERVAISLPRTELAIPAYYVIAPAEASSNLARFDGVRYGHRAAEYSDLNEMISRSRAEGFGDEVKRRILIGAYVLSHGYYDAYYLQAQRLRRLIAQDFQRAFAGQCDVIMGPVAPSVAKNIGENRDDPTADWLADVYTLGVSLAGLPAMSVPCGFGAAGRPVGLQIIGNYFDEGRLLAIADRYQQVTDWHQRTPATQDA
>CP025522.1|AZY53902.1|3557287_3557596_+|Asp-tRNA(Asn)/Glu-tRNA(Gln)-amidotransferase-GatCAB-subunit-C
MALNQQDVARIARLARIELTPEQQSRAQDELNGILHLIERLQAVDTQGVEPLAHPLSAHEDIPLRLRQDAVTETASAERRAELLANAPEQSAGLFLVPKVIE
>CP025522.1|AZY53901.1|3556016_3557060_-|rod-shape-determining-protein
MFGFLRSYFSSDMAIDLGTANTLIYVRGKGIVLDEPSVVAIRHEGGPNGKKVIQAVGQEAKQMLGRVPGNIEAIRPMKDGVIADFTVTEQMLKQFIRMVHPRNMLAPSPRIIVCVPCGSTQVERRAIRESALGAGASHVYLIEEPMAAAIGAGLAVSDASGSMVVDIGGGTTEVAVISLGGMVYKGSVRVGGDKFDEAIVNYIRRNYGMLIGEPTAELIKKQIGSAFPGSEVREIEVKGRNLAEGVPRSFTVSSNEILESLTDPLNQIVSAVKIALEQTPPELGADITDKGIALTGGGALLRDLDRLLQEETGLPVVVADDPLTCVVRGCGEALEHLEKLGAIFIND
>CP025522.1|AZY53900.1|3555047_3555932_-|rod-shape-determining-protein-MreC
MQRQGTPPLFRRGPPAEVRLVILVALALALIVVDSQLRILEPVRRAVSVALYPFQRAVMAPRDLVQQVDEWINAANLVRSENEALQRQRIELSQVATHAVQLAAENAQLRRLLGVTDTVGQPATVVEVLYEPPNAFHPRLVFNKGSKAGIAPGMPVIDEGGVVGQIVRVTPMTAEAAMVTDERVSIPVQVLRNGLRLIAFGGHTPGTIDVRYLAANADIKPGDTIVTSGVGGLFPAGLPVAKISSVERDTASGFARAIAEPLAHPERYRHFLVLQVDVAKAEANQEEADGGTTQ
>CP025522.1|AZY53899.1|3554506_3555067_-|rod-shape-determining-protein-MreD
MVAPRNNAAQRRLGTPSNVHPERLMRPARGFFVWGTLLLVWLLSLLPWRQWPASPDILLLVIAFWSAYEPRRVGMFTAFIFGLLLDVHDASLLGGHALTFTLVAYGALALHRRLQRFDLWSQAMHMLPVFFLSQLLTQIIMAWLAGRWAGWDWAYGVLLTTALWPVFGWVLQLPQRLHDDVESSAS
>CP025522.1|AZY53898.1|3552596_3554495_-|penicillin-binding-protein-2
MFEFKKTSQQQKQRFRLRAWVGGLFALACFGVLIGRFWYLQVDRYEGFSERADRNRIAVQPIPPRRGEVLDRNGVVLARNYRTYTLEVVPARAGPVDELFARLTPVVYISPADQRRFKRRVSESGRYANLVLRNNLNETEAAWFSAHAFEFPGVELRARWVREYPQGEAAAHVVGYIGRIAENDLEDLEKSGQLGNYRGTDVIGKKGIEKTWEQALHGRTGLEEVEVTAGGRPVRTLRRIDPVPGSDIMLSIDLGLQRVAEKAFEGHRGALVALDPDTGEVLAFVSQPSFDPNLFVDGIDVENWRRLNESPDHPLINRPLSGTYPIGSTYKPFVGLAALELGKRRATDRLPDPGYYEFGGQKFRNAGGAVFGMTDMHRAIVVSSDTYFYSLGPEIGVNALHDFSKQFGFGQITGIDLEGERAGVLPSTDWKRRAYKDRERQRWYAGETISVAVGQGYNAFTLLQLAQGTSTLANNGLYRRPHLVHAVRDSRTGELTATPSTPDYRIPLKQANIDVIKSAMADVVRSGTARRAFANTAYQAAGKTGTAQVFSLRGGQYRAAALDERLRDHALFMGFAPVEHPRIAVALIVENAGWGASVAAPIAREVFDYWLTPKREDKIVRPQQVAAGEKAQ
>CP025522.1|AZY53897.1|3551463_3552600_-|rod-shape-determining-protein-RodA
MKRIGLVLLRVFTAFDWPLLLVLVLFAALGLTVMHSAVGSTDWRFAEQARNFTIAFFAMWIVALVSPQTLMKLALPFYILGVVLLLGVEFVGETSKGATRWLNLGFTRIQPSEMMKIAVPMMLAWYFQRHEGQVRVRDFLVAVLMLGLPFGLIVLQPDLGTALLVFGAGFFVIYFAGLSFKLLIPAVLIGVIGIGTLVYYEDQLCEPDVDWVVLHDYQKHRVCTLLNPSSDPLGKGFHTIQSMIAVGSGGLYGKGYMQGTQTHLDFIPERTTDFIFAVYAEEFGLYGGVALLVLYGLLIARGLAIASRSVSQFGRLLAGSMTMMMFIYVFVNVGMVTGILPVVGVPLPFMSYGGTALLTMGVAFGIMMSISRAKPVKA
>CP025522.1|AZY53896.1|3550374_3551427_+|lactate-dehydrogenase
MKIAIPDAIAYGEALLVAQGVPQDIAFDVAEHLVESDRVGYTSHGLSILPNYARVLKEGFLQADGRLQLLTDNGGFLAYDGNNGFGQHVGKMAVQAAIERTTQQGSCVLTLRRSHHLGRMGYYGEMAASAGFILLAFTNVINRAPTVAPFGGARACLTTNPLCFAGPLPGGRPPLIVDMATSSIAVNKARVLATNGEQAPPGSLIDAEGNPTTDPNALFTNPPGALLPFGGHKGYAMGVVAELLAGVLSGGGTIQPENPRQGVATNNMFAVLLDPQVDFNASWRSHEVAAFIDYLHDCPPQPGVDGVQYPGEYEAANRARNGDAISFAPAIWHKLAELGQKLGVSAPAAA
>CP025522.1|AZY53895.1|3548873_3550364_+|hypothetical-protein
MTAQAAVPAPQAPKKKIPIGLVAGFIALILVLLIPTPAELPVAGHRMLAILVFAVVVWITEAVSYEASAIMVTTLMAFLLGTAPSIKNPDVLIGTSAAITMALQGFANSALALVAGALFIAAAMTFTGLDRRIALVTLSLIGTTTRRILIGAIAVTIVLSLVVPSATARSAAVVPIMMGVIAAFGVDKRSNIAAGIMIIVAQATSIWNVGIQTAAAQNLLTVGFMDKMLGERVSWAEWLIAGAPWAIIMSVILILIVLKMLPPESNEIAGGKEAVERELREMGPMTPPQKRLLAVSIFLLMCWSTEKVLHNFDTTSTTYLGLVLLMLPRFGVMTWKDVQSRIPWGTVIVFGVGISLGSALLSTQAGQWLGNQVVTHTGLDNLGPLSIFAILGAFLILIHLGFASATALTSAMLPILISVLQTLPGDFNRLGMTMLLGFVVSYGFILPINAPQNMVCLGTETFTARQFAKVGILITIIGFALMIVMGMTYWRWLGLL
>CP025522.1|AZY53905.1|3561022_3561685_-|orotate-phosphoribosyltransferase
MSNTATDFVRFALDEGVLRFGSFKVKSGRMSPYFFNAGLFNSGRSVGKLAAFYAQALLDSGLNFDMLFGPAYKGIPLATATAVALAGHPQASGDIPFAYNRKEAKDHGEGGTLVGAPLAGRVVIIDDVITAGTSVRESVEIIRAAGAQPAAVLIAMDRMERAGPDEALSPHSAVQDVAKTYGIPVISIASLADILQLLQDDEQFAAHRDSVLAYREQYGV
>CP025522.1|AZY53906.1|3561783_3562566_-|exodeoxyribonuclease-III
MLRVISANLNGIRSANTKGFFDWLHQQNADFVCVQELKAQEADLSPAMKAPAPLQGYFHYAEKKGYSGVGIYTPHEPESVVIGLGVPDIDAEGRYIELVYPKLSVVSVYLPSGSSGDHRQTAKYRFMEHFYRHLADLIGRGREVVICGDWNIAHKEADLKNWKGNLKNSGFLPEERAWLTQVFDELKWVDVYRRLAPDATGEGYTWWSNRGQAWAKNVGWRIDYHIASGALAATAQQAAIYKDVRFSDHAPLTIDYDFSL
>CP025522.1|AZY53907.1|3563057_3564395_+|NADP-specific-glutamate-dehydrogenase
MQSLNDFLGRVASRDPHQPEFMQAVQEVMGSLWPFIEKNPSYGQQALLERLVEPERVIQFRVCWTDDQGRAQVNRAFRIQHNSAIGPFKGGMRFHPSVNLSVLKFLAFEQTLKNALTTLPMGGGKGGSDFDPKGKSDGEVMRFCQALMVELYRHLGPDTDVPAGDIGVGAREVGYMAGMMKKLSNSAASVFTGKGLSFGGSLIRPEATGFGTVYFAEQMLRRVSMSFEGLRVSVSGSGNVAQYAIEKAMALGARVLTASDSGGTVVDEAGFTPEKLQALMHIKNVQRGRVEDYAKQFGLRFLPGARPWQIPVDVALPCATQNELDEADARILIANGVKCVAEGANMPATLAAAQAFIDAHVLYAPGKASNAGGVAVSGLEMSQNAARLSWTREEVDQRLFAIMCDIHENCVRHGHAESGYVNYLDGANIAGFVKVADAMLQQGLY
>CP025522.1|AZY53908.1|3564446_3565085_-|trimeric-intracellular-cation-channel-family-protein
MPSETSTLLLHTLYLIAIVAEAMTAALAAGRREMDWVGVCVIACVTALGGGSLRDVLLGHYPLTWVSHPEYLAMTAGAALLTALCAPMLRHLRKVFLLLDALGLVAFSIIGCKVAQQMDLPLSIVIISGVITGCAGGVLRDVLCNDIPLLFRSELYASVSLVTGGLYLALDHYTGTVNVAVPIALAVGLAFRLLALRFNWQMPKFVYRGDWH
>CP025522.1|AZY53909.1|3565212_3566067_+|universal-stress-protein
MTETILLATDLSARSDRALDRALMLARQHHDRLLALHVMEPPSASTLATPAWRRLTPDHKALAEQRLAEDLAEAGVPTEAVVVSGHPLDVILDTVQHFNCSLIVTGVARETTVGRLLLGTTVERLARHASTPVLVVKARPRKPYQDVVIATDFSEGSRQALTAALKLAADARITLFHAYSTPAGQDDLPQDAEVRSLYNDALQKAQAFLAATPELAGRAMPEIVLEAGLPEHMLSEFVFKRRCDLVVTGTHGLTGILRTAIGSVAEKLLEALPCDVLIVRQAAA
>CP025522.1|AZY53910.1|3566068_3567301_-|MFS-transporter
MYFSRRVAPLLALGFASGLPLALTSGTLQAWATVEGASLQDIGFLTLVGSAYTLKFLWAPLIDRYAPPFLGRRRGWMLLTQLLLAVTIMLMGLLSPEQSLLPLAMLAVLVAFLSASQDIAFDAYSTDVLHKNERGAGAAVKVLGYRLAMLVSGGLALVLADHWLGWGTTYVLMGFLMLAGVAGTFWAPEPEQPSAAPRSLGRAVVEPFREFFSRRGAIIFLALIVLYKLGDAFAGALSTTFLIRGAGFTPTEVGTVNKILGLAATIVGALAGGAIMSRWGLYRSLMAFGALQAVSNLGYWLISVAPKSIGLMALAVGIENLCGGLGTAAFVALLMSMCNRAFSATQFALLSALSAVGRTYLAGPLTPVLVGYMGWPGFFMATVFIALPGLVLLWLRKSDIESLEREGLRL
>CP025522.1|AZY53911.1|3567396_3568008_-|methionine-biosynthesis-protein-MetW
MSPAINALAPVVLRPDLERIANWIAPASRVLDLGCADGALLAYLRDYRQVRGAGVEIDDASVIACVGRGVEVIQQNLEDGLALFDDKQFDTVVLSQTLQSMHRTEHILREMARVSRFGIVSFPNFGYWPHGWSILRGRMPVTGQMPYQWYNTPNIHLCTLRDFEDLARDVGVRILERATFNDRREVKVLPGWRSTLAVYRFEA
>CP025522.1|AZY53912.1|3568004_3569252_-|homoserine-O-acetyltransferase
MTSPALTAASVTPSRNTTSPDTTSHRPASVGVVSPVFLRFDEPLPLASGQSLNAYELAVETYGTLNAERSNAVLICHALNASHHVAGVAAGNPKDVGWWDNMVGPGKPVDTDVFFVIGINNLGSCFGSTGPASTNPETGLPWGAAFPVLTVEDWVRAQARVADHFGIQRFAAVMGGSLGGMQALSWAITLPERVAHCVVIASTPRLSAQNIGFNEVARRAIITDPGFHGGNYYAHDTVPHRGLAVARMIGHITYLSDDDMAEKFGRTQREPAENGAYRYGYDVEFEVESYLRYQGEKFSRYFDANTYLLITRALDYFDPARATGGDLARALSSAQADFLLVSFTTDWRFPPERSRDIVRALLKNGSPVTYAEIDAPHGHDAFLLEDARYHAVVSAYYERIARNLGLTRQAEESAA
>CP025522.1|AZY53913.1|3569663_3571250_+|glutamate--cysteine-ligase
MTAHSNSRLALVQAHPDLLAQTLRGVEKEGLRVDAQGVLARTPHPAGLGSALTNEQVTTDYSEALLELITGTHSRVESLLQELRDTHRFVYGVLDGELIWNQSMPAYLPAEADIPIAWYGHSNTGMLKHVYRRGLAERYGKTMQCIAGVHYNFSLPDALWPLLEPDAASLQESRSRGYIALIRNFTRYSWLLMYLFGAAPALSREFMRGREHPLQSLGADTLYLPYATSLRMSDLGYQNKAQSQLKLCYNDLSTFLGRLYEAVTQPWPAYQAIGTQRDGAWIQLNTNVLQIENEYYSSIRPKRTTGRCERPITALAERGVQYVEVRCLDIDPQEPTGLAPDTARFVDAFLLFCAVSESRFFDQNGYCQRSADNFSTVVKEGRKPGLMLDHDGQPVSLAQWGEALLDQVTQYAALYDAALGGTAYVAAVEQQRAKLLDPDLTPSARLLADLRASGQSFHDYTLAQSQRHADTLRAEALPAATAQAYADAVQDSLAQQQQIEQSDTVDFDTYVARYHAALKNPLPARDAS
>CP025522.1|AZY53914.1|3571283_3571802_+|hypothetical-protein
MRRLILSLVLLASGLGLAQAQPAAVRTVDHVDLDRYMGRWYEIAHLPMFFQRNCVGDTTAEYSQNTDGTVSVTNRCRTKNGSIDAATGTATVVADSGNAKLEVSFFRPFKGDYWIIGLDPEYRWAVVGSPNRKTLWVLARTPELAPADLQQALNIAKSQGYDLSELKYTEQR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1392437 : 1482823

Pseudomonas_phage(13.51%)

terminase,tail,integrase,tRNA,portal,protease,head,capsid

attL 1407538:1407554|attR 1488303:1488319

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZY52192.1\|1392437_1395299_-\|tRNA	isoleucine--tRNA ligase	A0A1V0SJ93	Klosneuvirus	3.3e-70	25.5
AZY54244.1\|1395288_1396254_-	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
AZY54245.1\|1396302_1396971_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	5.2e-27	37.3
AZY52193.1\|1397010_1398474_+	rRNA methyltransferase	NA	NA	NA	NA
AZY54246.1\|1398480_1398756_-	hypothetical protein	NA	NA	NA	NA
AZY52194.1\|1399096_1400305_+	acyl-CoA desaturase	NA	NA	NA	NA
AZY52195.1\|1400301_1402554_+	DNA helicase II	A7KV33	Bacillus_phage	5.9e-107	37.3
AZY52196.1\|1402909_1404832_-	ABC transporter	A0A2K9L0W2	Tupanvirus	4.3e-66	31.9
AZY52197.1\|1404828_1405719_-	50S ribosomal protein L3 N(5)-glutamine methyltransferase	NA	NA	NA	NA
AZY52198.1\|1405725_1406859_-	succinyl-diaminopimelate desuccinylase	NA	NA	NA	NA
AZY52199.1\|1406858_1407680_-	2,3,4,5-tetrahydropyridine-2,6-dicarboxylate N-succinyltransferase	NA	NA	NA	NA
1407538:1407554	attL	NA	NA	NA	NA
AZY52200.1\|1407703_1408912_-	succinyldiaminopimelate transaminase	NA	NA	NA	NA
AZY52201.1\|1409225_1410434_-\|integrase	site-specific integrase	A0A1W6JTA0	Pseudomonas_phage	1.8e-131	61.6
AZY52202.1\|1411000_1411501_+	hypothetical protein	NA	NA	NA	NA
AZY52203.1\|1411525_1412023_-	SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	3.6e-57	63.0
AZY52204.1\|1412022_1412301_-	hypothetical protein	NA	NA	NA	NA
AZY52205.1\|1412297_1412882_-	hypothetical protein	NA	NA	NA	NA
AZY52206.1\|1413014_1414031_-	recombinase RecT	Q858E1	Salmonella_phage	2.2e-61	47.8
AZY52207.1\|1414042_1414882_-	exonuclease VIII	V5YTC9	Pseudomonas_phage	1.6e-38	32.2
AZY52208.1\|1414901_1415087_-	hypothetical protein	NA	NA	NA	NA
AZY52209.1\|1415083_1415371_-	hypothetical protein	NA	NA	NA	NA
AZY52210.1\|1415432_1415786_-	hypothetical protein	NA	NA	NA	NA
AZY52211.1\|1415961_1416207_-	hypothetical protein	NA	NA	NA	NA
AZY52212.1\|1417029_1417494_-	hypothetical protein	NA	NA	NA	NA
AZY52213.1\|1418028_1418457_-	hypothetical protein	NA	NA	NA	NA
AZY52214.1\|1419265_1419628_-	transcriptional regulator	NA	NA	NA	NA
AZY52215.1\|1419700_1419922_+	hypothetical protein	NA	NA	NA	NA
AZY52216.1\|1420253_1420631_-	hypothetical protein	NA	NA	NA	NA
AZY52217.1\|1420967_1421216_-	bssS family protein	NA	NA	NA	NA
AZY52218.1\|1421478_1421910_+	hypothetical protein	NA	NA	NA	NA
AZY52219.1\|1421942_1422158_+	hypothetical protein	I6NMK4	Burkholderia_virus	8.0e-06	42.9
AZY52220.1\|1422154_1422973_+	hypothetical protein	A0A2I7RHJ6	Vibrio_phage	3.7e-19	47.7
AZY52221.1\|1422959_1423658_+	hypothetical protein	NA	NA	NA	NA
AZY54247.1\|1423791_1424154_+	hypothetical protein	R9TNL4	Vibrio_phage	1.0e-21	50.0
AZY52222.1\|1424164_1424548_+	hypothetical protein	NA	NA	NA	NA
AZY52223.1\|1424544_1425135_+	hypothetical protein	NA	NA	NA	NA
AZY52224.1\|1425336_1425819_+	hypothetical protein	NA	NA	NA	NA
AZY52225.1\|1426181_1426964_+	restriction endonuclease subunit M	Q5ZQW7	Pseudomonas_phage	2.2e-114	74.6
AZY52226.1\|1427501_1427780_-	hypothetical protein	K4NZP3	Burkholderia_phage	1.0e-08	59.2
AZY52227.1\|1427766_1428033_-	BrnT family toxin	NA	NA	NA	NA
AZY52228.1\|1428213_1428597_+	HNH endonuclease	Q8W6N0	Burkholderia_virus	7.0e-29	55.6
AZY52229.1\|1428792_1429275_+\|terminase	phage terminase small subunit P27 family	A4JWZ6	Burkholderia_virus	2.7e-54	64.6
AZY54248.1\|1429278_1431003_+\|terminase	terminase large subunit	A4JWZ7	Burkholderia_virus	7.0e-278	80.5
AZY52230.1\|1431156_1432389_+\|portal	phage portal protein	A0A1J0GUY8	Halomonas_phage	1.2e-154	66.8
AZY52231.1\|1432397_1433015_+\|head,protease	HK97 family phage prohead protease	A0A1J0GUZ0	Halomonas_phage	5.1e-61	61.8
AZY52232.1\|1433027_1434251_+\|capsid	phage major capsid protein	Q8SBH8	Shigella_phage	3.6e-135	59.3
AZY54249.1\|1434288_1434609_+\|head,tail	phage gp6-like head-tail connector protein	K7PKT4	Enterobacteria_phage	3.8e-12	36.5
AZY52233.1\|1434619_1434958_+\|head,tail	head-tail adaptor protein	Q3HQT3	Burkholderia_phage	9.3e-09	39.3
AZY52234.1\|1434954_1435449_+	hypothetical protein	NA	NA	NA	NA
AZY52235.1\|1435441_1435792_+	DUF3168 domain-containing protein	NA	NA	NA	NA
AZY52236.1\|1435791_1436232_+	hypothetical protein	NA	NA	NA	NA
AZY52237.1\|1436303_1436951_+\|tail	phage tail protein	A0A0H5BBY3	Pseudomonas_phage	3.9e-56	52.1
AZY52238.1\|1436984_1437302_+	hypothetical protein	A0A0S2SYT8	Pseudomonas_phage	5.6e-24	48.6
AZY54250.1\|1437364_1437610_+	hypothetical protein	NA	NA	NA	NA
AZY52239.1\|1437644_1443182_+\|tail	phage tail protein	A0A2H4J107	uncultured_Caudovirales_phage	8.8e-72	34.0
AZY52240.1\|1443178_1444069_+	hypothetical protein	NA	NA	NA	NA
AZY52241.1\|1444070_1445000_+\|tail	phage tail protein	NA	NA	NA	NA
AZY52242.1\|1445005_1445398_+	hypothetical protein	NA	NA	NA	NA
AZY52243.1\|1445484_1445763_+	hypothetical protein	NA	NA	NA	NA
AZY54251.1\|1445778_1446585_+	hypothetical protein	NA	NA	NA	NA
AZY52244.1\|1446589_1446805_+	hypothetical protein	NA	NA	NA	NA
AZY52245.1\|1446804_1447356_+	lysozyme	NA	NA	NA	NA
AZY52246.1\|1447399_1447924_-	hypothetical protein	NA	NA	NA	NA
AZY54252.1\|1448208_1448664_+	DUF2514 domain-containing protein	Q3HQV1	Burkholderia_phage	1.2e-06	56.6
AZY52247.1\|1448792_1449077_-	transcriptional regulator	NA	NA	NA	NA
AZY52248.1\|1450068_1450407_+	hypothetical protein	NA	NA	NA	NA
AZY52249.1\|1451166_1451487_-	XRE family transcriptional regulator	NA	NA	NA	NA
AZY52250.1\|1451483_1451783_-	DNA-binding protein	NA	NA	NA	NA
AZY52251.1\|1452362_1452596_+	DUF333 domain-containing protein	NA	NA	NA	NA
AZY52252.1\|1452783_1454541_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
AZY52253.1\|1455007_1455196_-	DUF4148 domain-containing protein	NA	NA	NA	NA
AZY52254.1\|1455487_1455808_+	hypothetical protein	NA	NA	NA	NA
AZY52255.1\|1456115_1456319_+	cold-shock protein CspA	A0A2H4N7Y6	Lake_Baikal_phage	6.6e-18	66.7
AZY52256.1\|1456596_1457142_+	DUF924 domain-containing protein	NA	NA	NA	NA
AZY52257.1\|1457397_1457604_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.1e-15	59.1
AZY52258.1\|1457673_1458252_-	TIGR00645 family protein	K4K6D8	Caulobacter_phage	1.8e-23	34.3
AZY52259.1\|1458431_1459742_+	trigger factor	NA	NA	NA	NA
AZY52260.1\|1459744_1460398_+	ATP-dependent Clp endopeptidase, proteolytic subunit ClpP	A0A223W000	Agrobacterium_phage	7.5e-55	55.9
AZY52261.1\|1460501_1461800_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	1.8e-129	56.2
AZY52262.1\|1461974_1464407_+	endopeptidase La	A0A0R6PGP8	Moraxella_phage	2.5e-220	52.0
AZY52263.1\|1464642_1466139_-	PLP-dependent aminotransferase family protein	A0A1X9I5H2	Streptococcus_phage	4.1e-16	28.5
AZY52264.1\|1466246_1467491_+	benzoate transporter	NA	NA	NA	NA
AZY54253.1\|1467650_1468772_-	MFS transporter	NA	NA	NA	NA
AZY52265.1\|1469289_1469931_-	LexA repressor	A0A2H4JG58	uncultured_Caudovirales_phage	3.2e-10	50.7
AZY52266.1\|1470231_1471434_-	aspartate/tyrosine/aromatic aminotransferase	NA	NA	NA	NA
AZY54254.1\|1471509_1473540_+	excinuclease ABC subunit B	NA	NA	NA	NA
AZY52267.1\|1473789_1474281_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
AZY52268.1\|1474470_1475004_+	Fe-S cluster assembly transcriptional regulator IscR	NA	NA	NA	NA
AZY52269.1\|1475025_1476237_+	IscS subfamily cysteine desulfurase	NA	NA	NA	NA
AZY52270.1\|1476273_1476678_+	Fe-S cluster assembly scaffold IscU	A0A218MKD1	uncultured_virus	1.8e-51	78.2
AZY52271.1\|1476679_1477003_+	iron-sulfur cluster assembly protein IscA	A0A2H4N7N5	Lake_Baikal_phage	1.2e-24	52.3
AZY52272.1\|1477006_1477513_+	co-chaperone protein HscB	NA	NA	NA	NA
AZY52273.1\|1477545_1479408_+	Fe-S protein assembly chaperone HscA	A0A0N9QXN8	Chrysochromulina_ericina_virus	1.3e-99	40.8
AZY52274.1\|1479416_1479758_+	ISC system 2Fe-2S type ferredoxin	NA	NA	NA	NA
AZY52275.1\|1479757_1479952_+	Fe-S assembly protein IscX	NA	NA	NA	NA
AZY52276.1\|1480066_1480963_+	methylglyoxal synthase	NA	NA	NA	NA
AZY52277.1\|1481007_1481295_-	hypothetical protein	NA	NA	NA	NA
AZY52278.1\|1481308_1482823_-\|tRNA	lysine--tRNA ligase	A0A1V0SAC0	Catovirus	2.2e-81	36.6
1488303:1488319	attR	NA	NA	NA	NA

DBSCAN-SWA_2

2031611 : 2042645

uncultured_Mediterranean_phage(25.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZY52663.1\|2031611_2033042_-	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.4e-29	26.4
AZY52664.1\|2033154_2033703_-	hypothetical protein	NA	NA	NA	NA
AZY52665.1\|2033806_2034586_-	3'-5' exonuclease	NA	NA	NA	NA
AZY52666.1\|2034582_2035434_-	LysM peptidoglycan-binding domain-containing protein	A0A292GJG6	Xanthomonas_phage	9.2e-13	40.3
AZY54308.1\|2035451_2036141_-	protein-L-isoaspartate(D-aspartate) O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	8.5e-33	45.7
AZY52667.1\|2036230_2036989_-	5'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.2e-69	52.0
AZY52668.1\|2037158_2037797_+	glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
AZY52669.1\|2037949_2038987_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.0e-95	52.9
AZY52670.1\|2039085_2040378_+	guanine permease	A0A0R6PHV4	Moraxella_phage	5.8e-67	36.3
AZY52671.1\|2040531_2041545_+	LLM class flavin-dependent oxidoreductase	NA	NA	NA	NA
AZY52672.1\|2041656_2042040_+	thioredoxin	V9SJ74	Achromobacter_phage	1.5e-10	27.6
AZY54309.1\|2042042_2042645_-	thymidylate synthase	A0A1X9I5T8	Streptococcus_phage	7.4e-17	48.6

DBSCAN-SWA_3

2194260 : 2203782

Bordetella_phage(60.0%)

integrase

attL 2191981:2191995|attR 2203092:2203106

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2191981:2191995	attL	NA	NA	NA	NA
AZY52798.1\|2194260_2195343_-\|integrase	integrase	A4PE72	Ralstonia_virus	3.4e-60	38.9
AZY52799.1\|2195565_2195751_-	conjugal transfer protein TraR	A0A2D0W9R7	Bordetella_phage	1.7e-12	55.6
AZY52800.1\|2195753_2196239_-	hypothetical protein	NA	NA	NA	NA
AZY54323.1\|2196235_2197576_-	hypothetical protein	Q774Z8	Bordetella_phage	2.0e-171	68.2
AZY52801.1\|2197665_2198139_-	SAM-dependent methyltransferase	A0A0N7IRF6	Acinetobacter_phage	6.2e-51	59.5
AZY52802.1\|2198168_2198540_-	hypothetical protein	Q775A2	Bordetella_phage	7.5e-28	56.1
AZY52803.1\|2198630_2200799_-	DNA polymerase I	Q775A3	Bordetella_phage	2.9e-281	68.3
AZY54324.1\|2200795_2200996_-	hypothetical protein	Q775A4	Bordetella_phage	2.2e-13	60.4
AZY52804.1\|2201204_2201654_-	hypothetical protein	A0A2H4J3Y5	uncultured_Caudovirales_phage	2.4e-36	68.3
AZY52805.1\|2201664_2202258_-	DUF2815 domain-containing protein	Q6J1N9	Burkholderia_virus	6.8e-31	45.3
AZY52806.1\|2202271_2202478_-	hypothetical protein	NA	NA	NA	NA
AZY52807.1\|2202474_2203782_-	DUF2800 domain-containing protein	Q775A7	Bordetella_phage	7.2e-150	65.2
2203092:2203106	attR	NA	NA	NA	NA

DBSCAN-SWA_4

2206903 : 2241084

Bordetella_phage(58.62%)

protease,terminase,head,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZY52814.1\|2206903_2207296_-	hypothetical protein	C7BGF7	Burkholderia_phage	1.1e-16	47.3
AZY52815.1\|2207409_2207661_+	hypothetical protein	A0A0R6PJ81	Moraxella_phage	2.1e-05	43.8
AZY52816.1\|2207657_2208692_+	DNA cytosine methyltransferase	W0LM09	Edwardsiella_phage	6.2e-104	58.7
AZY52817.1\|2208688_2210962_+	replication protein	B6SD24	Bacteriophage	3.5e-123	55.6
AZY52818.1\|2211132_2211390_+	hypothetical protein	Q775B7	Bordetella_phage	6.8e-12	45.5
AZY52819.1\|2211450_2211987_+\|terminase	terminase	Q775B8	Bordetella_phage	1.3e-36	54.5
AZY54325.1\|2212091_2213594_+\|terminase	terminase	Q775B9	Bordetella_phage	7.8e-249	80.2
AZY52820.1\|2213634_2214099_+	GNAT family N-acetyltransferase	Q775C0	Bordetella_phage	1.5e-41	57.5
AZY52821.1\|2214095_2214560_+	hypothetical protein	Q775C1	Bordetella_phage	7.7e-46	64.3
AZY52822.1\|2214562_2214970_+	hypothetical protein	Q775C2	Bordetella_phage	1.0e-09	77.3
AZY52823.1\|2214979_2216644_+\|head,tail	phage head-tail adapter protein	T1S9Z7	Salmonella_phage	7.6e-136	46.4
AZY52824.1\|2216655_2216988_+	hypothetical protein	Q775C4	Bordetella_phage	1.2e-37	77.1
AZY52825.1\|2217031_2217376_+	endopeptidase	Q775C5	Bordetella_phage	1.5e-22	52.2
AZY52826.1\|2217353_2218019_+\|protease	protease	Q775C6	Bordetella_phage	5.3e-40	58.1
AZY52827.1\|2218031_2219045_+	hypothetical protein	Q6J1R9	Burkholderia_virus	9.0e-140	71.4
AZY52828.1\|2219065_2219509_+	hypothetical protein	K4NYY6	Pseudomonas_phage	2.4e-20	43.3
AZY52829.1\|2219519_2219708_+	hypothetical protein	NA	NA	NA	NA
AZY52830.1\|2219786_2220428_+	hypothetical protein	Q775D0	Bordetella_phage	7.1e-66	60.1
AZY52831.1\|2220427_2222476_+	hypothetical protein	Q775D1	Bordetella_phage	0.0e+00	80.8
AZY52832.1\|2223253_2226226_+	hypothetical protein	Q858G0	Salmonella_phage	1.4e-47	25.0
AZY52833.1\|2226225_2228064_+	hypothetical protein	NA	NA	NA	NA
AZY52834.1\|2228056_2230510_+	hypothetical protein	A0A2H4J9B2	uncultured_Caudovirales_phage	1.0e-176	42.8
AZY52835.1\|2230569_2232090_+	hypothetical protein	Q775D5	Bordetella_phage	5.3e-43	46.3
AZY52836.1\|2232105_2233266_+	hypothetical protein	G8CLA7	Synechococcus_phage	3.0e-46	38.6
AZY52837.1\|2233294_2233669_+	hypothetical protein	Q775D7	Bordetella_phage	6.4e-59	87.9
AZY52838.1\|2233953_2234940_+	Retron-type reverse transcriptase	Q775D8	Bordetella_phage	4.8e-130	64.5
AZY52839.1\|2235420_2235669_+	hypothetical protein	Q775E0	Bordetella_phage	5.0e-28	74.7
AZY52840.1\|2235668_2236166_+	hypothetical protein	Q775E1	Bordetella_phage	2.1e-65	71.8
AZY54326.1\|2236228_2236792_+	hypothetical protein	Q775E2	Bordetella_phage	5.1e-60	80.1
AZY52841.1\|2238643_2239681_+	hypothetical protein	A0A127AWB9	Bacillus_phage	1.6e-11	29.4
AZY52842.1\|2239596_2241084_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	2.1e-20	39.6

DBSCAN-SWA_5

2467420 : 2495054

Bordetella_phage(65.22%)

tail,terminase,integrase,protease,head

attL 2460930:2460944|attR 2497637:2497651

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2460930:2460944	attL	NA	NA	NA	NA
AZY53019.1\|2467420_2467813_-	hypothetical protein	L0MXF6	Edwardsiella_phage	1.1e-05	40.3
AZY53020.1\|2467818_2468931_-\|tail	phage tail protein	Q775D5	Bordetella_phage	1.5e-50	67.3
AZY53021.1\|2469091_2472508_-	hypothetical protein	M1IDU6	Pelagibacter_phage	2.8e-52	24.1
AZY53022.1\|2472467_2474084_-	hypothetical protein	W6MYA2	Pseudomonas_phage	3.3e-19	28.6
AZY53023.1\|2474074_2474668_-	hypothetical protein	Q775D2	Bordetella_phage	3.5e-19	45.8
AZY53024.1\|2474679_2476725_-	hypothetical protein	Q775D1	Bordetella_phage	0.0e+00	93.7
AZY53025.1\|2476724_2477396_-	hypothetical protein	Q775D0	Bordetella_phage	2.1e-116	93.2
AZY54347.1\|2477470_2477656_-	hypothetical protein	Q775C9	Bordetella_phage	6.8e-22	79.4
AZY53026.1\|2477683_2478106_-	hypothetical protein	Q775C8	Bordetella_phage	3.3e-56	82.1
AZY53027.1\|2478124_2479120_-	hypothetical protein	Q775C7	Bordetella_phage	4.5e-184	97.6
AZY53028.1\|2479133_2479826_-\|protease	protease	Q775C6	Bordetella_phage	1.1e-83	80.0
AZY53029.1\|2479782_2480130_-	endopeptidase	Q775C5	Bordetella_phage	3.1e-52	89.6
AZY53030.1\|2480216_2481884_-\|head,tail	phage head-tail adapter protein	T1S9Z7	Salmonella_phage	2.4e-134	46.0
AZY53031.1\|2481885_2482263_-	hypothetical protein	Q775C2	Bordetella_phage	3.8e-11	85.7
AZY53032.1\|2482266_2482725_-	hypothetical protein	Q775C1	Bordetella_phage	8.3e-69	90.8
AZY53033.1\|2482721_2483186_-	GNAT family N-acetyltransferase	Q775C0	Bordetella_phage	8.7e-74	93.5
AZY54348.1\|2483229_2484648_-\|terminase	terminase	Q775B9	Bordetella_phage	7.9e-227	77.0
AZY53034.1\|2484767_2485343_-\|terminase	terminase	Q775B8	Bordetella_phage	4.2e-78	85.6
AZY53035.1\|2485361_2485628_-	hypothetical protein	Q775B7	Bordetella_phage	1.2e-27	84.2
AZY54349.1\|2485609_2485729_-	hypothetical protein	NA	NA	NA	NA
AZY53036.1\|2485788_2486418_-	hypothetical protein	K4ICN3	Acidithiobacillus_phage	2.8e-30	49.4
AZY53037.1\|2486414_2486897_-	hypothetical protein	NA	NA	NA	NA
AZY53038.1\|2486893_2487862_-	hypothetical protein	A0A2H4FS76	Methylophilaceae_phage	1.1e-14	41.8
AZY53039.1\|2487861_2488071_-	hypothetical protein	NA	NA	NA	NA
AZY53040.1\|2488072_2488387_-	transcriptional regulator	NA	NA	NA	NA
AZY53041.1\|2488657_2488906_+	hypothetical protein	NA	NA	NA	NA
AZY53042.1\|2489316_2490270_+	phage repressor protein	B5TK58	Pseudomonas_phage	2.2e-10	26.1
AZY53043.1\|2490346_2490541_+	hypothetical protein	NA	NA	NA	NA
AZY53044.1\|2490722_2491331_+	hypothetical protein	NA	NA	NA	NA
AZY53045.1\|2491685_2492414_+	hypothetical protein	NA	NA	NA	NA
AZY53046.1\|2493112_2493439_+	hypothetical protein	NA	NA	NA	NA
AZY53047.1\|2493539_2493824_+	hypothetical protein	NA	NA	NA	NA
AZY53048.1\|2493820_2494306_+	HNH endonuclease	NA	NA	NA	NA
AZY53049.1\|2494428_2494815_-	hypothetical protein	Q3LZN5	Bacteriophage	2.0e-07	57.4
AZY53050.1\|2494862_2495054_-\|integrase	integrase	NA	NA	NA	NA
2497637:2497651	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2764786 : 2820755

Burkholderia_phage(27.59%)

terminase,tail,integrase,tRNA,plate,portal,head,capsid

attL 2764574:2764598|attR 2794782:2794806

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2764574:2764598	attL	NA	NA	NA	NA
AZY53250.1\|2764786_2765827_+	hypothetical protein	Q7M293	Enterobacteria_phage	1.4e-71	41.4
AZY53251.1\|2765828_2766455_+	hypothetical protein	NA	NA	NA	NA
AZY53252.1\|2767024_2768095_-\|portal	phage portal protein	A4PE27	Ralstonia_virus	2.5e-116	60.1
AZY54375.1\|2768094_2769843_-\|terminase	terminase	A4JWQ1	Burkholderia_virus	9.5e-214	64.9
AZY53253.1\|2770001_2770859_+	hypothetical protein	A0A077K9W8	Ralstonia_phage	5.4e-53	45.1
AZY53254.1\|2770888_2771929_+\|capsid	phage major capsid protein, P2 family	A4JWP9	Burkholderia_virus	1.8e-106	56.7
AZY53255.1\|2771928_2772699_+\|integrase	integrase	A4PE31	Ralstonia_virus	5.4e-36	40.7
AZY53256.1\|2772792_2773260_+\|head	head completion/stabilization protein	E5E3S2	Burkholderia_phage	5.4e-31	52.2
AZY54376.1\|2773256_2773466_+\|tail	phage tail protein	A0A2H4J946	uncultured_Caudovirales_phage	8.3e-16	56.5
AZY53257.1\|2773470_2773833_+	hypothetical protein	NA	NA	NA	NA
AZY53258.1\|2773829_2774129_+	hypothetical protein	NA	NA	NA	NA
AZY53259.1\|2774121_2774928_+	peptidoglycan-binding protein	E5E3R7	Burkholderia_phage	8.3e-72	57.1
AZY53260.1\|2775189_2775462_+	hypothetical protein	E5E3W0	Burkholderia_phage	3.4e-17	52.9
AZY53261.1\|2775445_2775949_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.5e-23	39.4
AZY53262.1\|2775941_2776406_+	phage virion morphogenesis protein	A0A2H4J927	uncultured_Caudovirales_phage	8.0e-35	51.7
AZY53263.1\|2776467_2777094_+\|plate	phage baseplate assembly protein V	A4PE41	Ralstonia_virus	5.1e-45	48.7
AZY53264.1\|2777105_2777447_+\|plate	baseplate assembly protein	K4PAX6	Burkholderia_phage	2.5e-17	49.1
AZY53265.1\|2777448_2778366_+\|plate	baseplate assembly protein	A0A077K9X9	Ralstonia_phage	2.8e-76	54.4
AZY53266.1\|2778349_2778988_+\|tail	phage tail protein I	A0A077KER5	Ralstonia_phage	8.4e-51	57.0
AZY53267.1\|2779691_2779913_-	hypothetical protein	NA	NA	NA	NA
AZY53268.1\|2780365_2780548_+	hypothetical protein	NA	NA	NA	NA
AZY53269.1\|2780671_2781853_+\|tail	phage tail protein	Q9ZXK4	Pseudomonas_virus	2.1e-148	66.4
AZY53270.1\|2781909_2782425_+\|tail	phage major tail tube protein	Q9ZXK3	Pseudomonas_virus	1.4e-51	57.9
AZY53271.1\|2782449_2782818_+\|tail	phage tail assembly protein	V9IQM4	Stenotrophomonas_phage	6.6e-16	46.2
AZY53272.1\|2782826_2782943_+\|tail	GpE family phage tail protein	E5FFG6	Burkholderia_phage	3.0e-07	78.8
AZY53273.1\|2782946_2785685_+\|tail	phage tail tape measure protein	A0A2H4JE61	uncultured_Caudovirales_phage	1.1e-171	43.0
AZY53274.1\|2785697_2786153_+	oxidoreductase	Q9ZXJ9	Pseudomonas_virus	1.2e-32	50.4
AZY53275.1\|2786152_2787256_+	late control protein	K4PAY4	Burkholderia_phage	4.9e-83	48.8
AZY53276.1\|2787683_2788082_-	hypothetical protein	E5E3P4	Burkholderia_phage	9.6e-13	56.6
AZY54377.1\|2788414_2788687_+	transcriptional regulator	NA	NA	NA	NA
AZY53277.1\|2788676_2789078_+	hypothetical protein	NA	NA	NA	NA
AZY53278.1\|2789159_2789393_+	hypothetical protein	NA	NA	NA	NA
AZY53279.1\|2789928_2792742_+	hypothetical protein	K4NXL6	Burkholderia_phage	4.3e-248	48.7
AZY53280.1\|2793324_2794767_-\|integrase	integrase	Q7M297	Enterobacteria_phage	1.9e-63	36.0
AZY53281.1\|2794951_2796211_-	aspartate kinase	NA	NA	NA	NA
2794782:2794806	attR	NA	NA	NA	NA
AZY53282.1\|2796303_2797329_-\|tRNA	tRNA lysidine(34) synthetase TilS	NA	NA	NA	NA
AZY53283.1\|2797347_2798313_-	acetyl-CoA carboxylase carboxyl transferase subunit alpha	NA	NA	NA	NA
AZY53284.1\|2798349_2798994_-	DNA-3-methyladenine glycosylase 2 family protein	NA	NA	NA	NA
AZY53285.1\|2799007_2800459_-\|tRNA	cysteine--tRNA ligase	A0A2K9L6B7	Tupanvirus	1.0e-35	33.3
AZY53286.1\|2800661_2801348_+	tetratricopeptide repeat protein	NA	NA	NA	NA
AZY54378.1\|2801479_2801986_+	cyclophilin	NA	NA	NA	NA
AZY53287.1\|2801978_2802749_+	UDP-2,3-diacylglucosamine diphosphatase	NA	NA	NA	NA
AZY53288.1\|2802855_2803704_-	undecaprenyl-diphosphatase	NA	NA	NA	NA
AZY53289.1\|2803731_2805318_-	hypothetical protein	A0A0R6PEZ3	Moraxella_phage	3.8e-36	42.9
AZY54379.1\|2805478_2806258_-	inositol monophosphatase	NA	NA	NA	NA
AZY53290.1\|2806403_2807207_+	RNA methyltransferase	NA	NA	NA	NA
AZY53291.1\|2807295_2807706_+	DUF1330 domain-containing protein	NA	NA	NA	NA
AZY53292.1\|2807710_2808556_+	alpha/beta hydrolase	NA	NA	NA	NA
AZY53293.1\|2808552_2809545_-	tripartite tricarboxylate transporter substrate binding protein	NA	NA	NA	NA
AZY53294.1\|2809720_2810476_+	IclR family transcriptional regulator	NA	NA	NA	NA
AZY53295.1\|2810486_2811320_-	mechanosensitive ion channel protein MscS	NA	NA	NA	NA
AZY54380.1\|2811375_2812467_-	DUF1513 domain-containing protein	NA	NA	NA	NA
AZY53296.1\|2812456_2813515_-	aminopeptidase	NA	NA	NA	NA
AZY53297.1\|2813511_2815005_-	thiol oxidoreductase	NA	NA	NA	NA
AZY53298.1\|2815001_2816294_-	peptidase	NA	NA	NA	NA
AZY53299.1\|2816606_2817608_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
AZY53300.1\|2817611_2818388_+	ABC transporter permease	NA	NA	NA	NA
AZY53301.1\|2818384_2819206_+	nitrate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.5e-28	29.4
AZY53302.1\|2819202_2819379_+	DUF4089 domain-containing protein	NA	NA	NA	NA
AZY53303.1\|2819375_2820755_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase GatCAB subunit A	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025522

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection