CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028129	Rathayibacter rathayi strain DSM 7485 chromosome, complete genome	1 crisprs	csa3,DEDDh,WYL,cas3	0	0	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP028129_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028129_2

1947547-1947703

Orphan

Consensus_repeat	Method
CCAGGCAGAGGGCCCACCCGAGAATCGCGTACCAGCGATTCGAGACAGCCCGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028129_2

>merge|CP028129|2|1947547-1947703|CRISPRCasFinder
CCAGGCAGAGGGCCCACCCGAGAATCGCGTACCAGCGATTCGAGACAGCCCGACCCACCCCGCTCTACACAAAGCACCCCATCACCAAACAGCCCTCTCACCTCCAGGCAGAGGGCCCACCCGAGAATCGCGCACCAGCGATTCGAGACAGCCCGAC

>CP028129|2|2|1947547-1947703|CRISPRCasFinder
CCAGGCAGAGGGCCCACCCGAGAATCGCGTACCAGCGATTCGAGACAGCCCGAC	CCACCCCGCTCTACACAAAGCACCCCATCACCAAACAGCCCTCTCACCT
CCAGGCAGAGGGCCCACCCGAGAATCGCGCACCAGCGATTCGAGACAGCCCGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP028129.1\|AZZ49361.1\|1935857_1936079_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|379386
CP028129.1\|AZZ49373.1\|1951235_1951640_-\|cytidine-deaminase	unknown	unknown	gnl\|CDD\|180142
CP028129.1\|AZZ49363.1\|1937494_1938709_-\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|226951
CP028129.1\|AZZ49370.1\|1948086_1948563_-\|PTS-ascorbate-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|238129
CP028129.1\|AZZ49362.1\|1936412_1937498_-\|hypothetical-protein	unknown	unknown	unknown
CP028129.1\|AZZ49374.1\|1951651_1952917_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224005
CP028129.1\|AZZ49366.1\|1941502_1943269_+\|ATP-grasp-domain-containing-protein	unknown	unknown	gnl\|CDD\|227111
CP028129.1\|AZZ50494.1\|1952913_1954065_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|226962
CP028129.1\|AZZ49375.1\|1954220_1955741_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226364
CP028129.1\|AZZ50493.1\|1943375_1944812_-\|NAD(P)H-quinone-dehydrogenase	unknown	unknown	gnl\|CDD\|236112
CP028129.1\|AZZ49368.1\|1945747_1947415_+\|phospho-sugar-mutase	unknown	unknown	gnl\|CDD\|100092
CP028129.1\|AZZ50492.1\|1939427_1940666_-\|class-I-SAM-dependent-RNA-methyltransferase	unknown	unknown	gnl\|CDD\|225174
CP028129.1\|AZZ49376.1\|1957371_1958775_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224458
CP028129.1\|AZZ49365.1\|1940776_1941403_+\|septum-formation-inhibitor-Maf	unknown	unknown	gnl\|CDD\|178901
CP028129.1\|AZZ49367.1\|1944917_1945751_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|236183
CP028129.1\|AZZ49371.1\|1948565_1949687_-\|adenosine-deaminase	unknown	unknown	gnl\|CDD\|236480
CP028129.1\|AZZ50495.1\|1955887_1956973_-\|BMP-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|380577
CP028129.1\|AZZ49372.1\|1949891_1951199_-\|thymidine-phosphorylase	unknown	unknown	gnl\|CDD\|180276
CP028129.1\|AZZ49364.1\|1938695_1939403_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP028129.1\|AZZ49369.1\|1947817_1948090_-\|PTS-ascorbate-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|99905

Protein	Function_ID	Function_description	E-value
CP028129.1\|AZZ49361.1\|1935857_1936079_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|379386	pfam13822, ACC_epsilon, Acyl-CoA carboxylase epsilon subunit. This family includes the epsilon subunits of propionyl-CoA carboxylase, EC:6.4.1.3, and acetyl-CoA carboxylase, EC:6.4.1.2. These enzymes are involved in the biosynthesis of long-chain fatty acids. The epsilon subunit is necessary for an efficient interaction between the alpha and beta subunits of these enzymes.	0.000380763
CP028129.1\|AZZ49373.1\|1951235_1951640_-\|cytidine-deaminase	gnl\|CDD\|180142	PRK05578, PRK05578, cytidine deaminase; Validated.	7.45703e-70
CP028129.1\|AZZ49363.1\|1937494_1938709_-\|ATP-binding-protein	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.31694e-11
CP028129.1\|AZZ49370.1\|1948086_1948563_-\|PTS-ascorbate-transporter-subunit-IIA	gnl\|CDD\|238129	cd00211, PTS_IIA_fru, PTS_IIA, PTS system, fructose/mannitol specific IIA subunit. The bacterial phosphoenolpyruvate: sugar phosphotransferase system (PTS) is a multi-protein system involved in the regulation of a variety of metabolic and transcriptional processes. This family is one of four structurally and functionally distinct group IIA PTS system cytoplasmic enzymes, necessary for the uptake of carbohydrates across the cytoplasmic membrane and their phosphorylation.	3.68005e-28
CP028129.1\|AZZ49374.1\|1951651_1952917_-\|ABC-transporter-permease	gnl\|CDD\|224005	COG1079, COG1079, Uncharacterized ABC-type transport system, permease component [General function prediction only].	7.99281e-87
CP028129.1\|AZZ49366.1\|1941502_1943269_+\|ATP-grasp-domain-containing-protein	gnl\|CDD\|227111	COG4770, COG4770, Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism].	0
CP028129.1\|AZZ50494.1\|1952913_1954065_-\|ABC-transporter-permease	gnl\|CDD\|226962	COG4603, COG4603, ABC-type uncharacterized transport system, permease component [General function prediction only].	1.47046e-78
CP028129.1\|AZZ49375.1\|1954220_1955741_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|226364	COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only].	0
CP028129.1\|AZZ50493.1\|1943375_1944812_-\|NAD(P)H-quinone-dehydrogenase	gnl\|CDD\|236112	PRK07845, PRK07845, flavoprotein disulfide reductase; Reviewed.	0
CP028129.1\|AZZ49368.1\|1945747_1947415_+\|phospho-sugar-mutase	gnl\|CDD\|100092	cd05799, PGM2, This CD includes PGM2 (phosphoglucomutase 2) and PGM2L1 (phosphoglucomutase 2-like 1). The mammalian PGM2 is thought to be a phosphopentomutase that catalyzes the conversion of the nucleoside breakdown products, ribose-1-phosphate and deoxyribose-1-phosphate to the corresponding 5-phosphopentoses. PGM2L1 is thought to catalyze the 1,3-bisphosphoglycerate-dependent synthesis of glucose 1,6-bisphosphate and other aldose-bisphosphates that serve as cofactors for several sugar phosphomutases and possibly also as regulators of glycolytic enzymes. PGM2 and PGM2L1 belong to the alpha-D-phosphohexomutase superfamily which includes several related enzymes that catalyze a reversible intramolecular phosphoryl transfer on their sugar substrates. Other members of this superfamily include phosphoglucosamine mutase (PNGM), phosphoacetylglucosamine mutase (PAGM), the bacterial phosphomannomutase ManB, the bacterial phosphoglucosamine mutase GlmM, and the bifunctional phosphomannomutase/phosphoglucomutase (PMM/PGM). Each of these enzymes has four domains with a centrally located active site formed by four loops, one from each domain. All four domains are included in this alignment model.	0
CP028129.1\|AZZ50492.1\|1939427_1940666_-\|class-I-SAM-dependent-RNA-methyltransferase	gnl\|CDD\|225174	COG2265, TrmA, SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis].	3.26454e-68
CP028129.1\|AZZ49376.1\|1957371_1958775_+\|hypothetical-protein	gnl\|CDD\|224458	COG1541, PaaK, Coenzyme F390 synthetase [Coenzyme metabolism].	1.35814e-21
CP028129.1\|AZZ49365.1\|1940776_1941403_+\|septum-formation-inhibitor-Maf	gnl\|CDD\|178901	PRK00148, PRK00148, Maf-like protein; Reviewed.	3.23827e-78
CP028129.1\|AZZ49367.1\|1944917_1945751_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|236183	PRK08202, PRK08202, purine nucleoside phosphorylase; Provisional.	4.77736e-118
CP028129.1\|AZZ49371.1\|1948565_1949687_-\|adenosine-deaminase	gnl\|CDD\|236480	PRK09358, PRK09358, adenosine deaminase; Provisional.	2.71369e-126
CP028129.1\|AZZ50495.1\|1955887_1956973_-\|BMP-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|380577	cd06354, PBP1_PrnA-like, periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. Periplasmic binding domain of basic membrane lipoprotein, PnrA, in Treponema pallidum and its homologs from other bacteria and Archaea. The PnrA lipoprotein, also known as Tp0319 or TmpC, represents a novel family of bacterial purine nucleoside receptor encoded within an ATP-binding cassette (ABC) transport system (pnrABCDE). It shows a striking structural similarity to another basic membrane lipoprotein Med which regulates the competence transcription factor gene, comK, in Bacillus subtilis. The members of PnrA-like subgroup are likely to have similar nucleoside-binding functions and a similar type 1 periplasmic sugar-binding protein-like fold.	1.47976e-82
CP028129.1\|AZZ49372.1\|1949891_1951199_-\|thymidine-phosphorylase	gnl\|CDD\|180276	PRK05820, deoA, thymidine phosphorylase; Reviewed.	0
CP028129.1\|AZZ49364.1\|1938695_1939403_-\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	1.07027e-24
CP028129.1\|AZZ49369.1\|1947817_1948090_-\|PTS-ascorbate-transporter-subunit-IIB	gnl\|CDD\|99905	cd05563, PTS_IIB_ascorbate, PTS_IIB_ascorbate: subunit IIB of enzyme II (EII) of the L-ascorbate-specific phosphoenolpyruvate:carbohydrate phosphotransferase system (PTS). In this system, EII is an L-ascorbate-specific permease with two cytoplasmic subunits (IIA and IIB) and a transmembrane channel IIC subunit. Subunits IIA, IIB, and IIC are encoded by the sgaA, sgaB, and sgaT genes of the E. coli sgaTBA operon. In some bacteria, the IIB (SgaB) domain is fused C-terminal to the IIA (SgaT) domain. The IIB domain fold includes a central four-stranded parallel open twisted beta-sheet flanked by alpha-helices on both sides. The seven major PTS systems with this IIB fold include ascorbate, chitobiose/lichenan, lactose, galactitol, mannitol, fructose, and a sensory system with similarity to the bacterial bgl system.	3.67087e-23

>CP028129.1|AZZ49368.1|1945747_1947415_+|phospho-sugar-mutase
MSADVRDLAADWLAQDPDPETRAELVGLLSASDSGDASAQAELEDRFGARLAFGTAGLRGSIAAGSNRMNRVLVSQAAVGLADHLLAQGLSRPVVVIGFDGRKNSRIFAEDSAALMAGAGVDAVLLPRLLPTPVLAFAVRHLGADAGVMVTASHNPPQDNGYKVYLGGADEGSQIVPPADSEIAERILAVARDRRVPELPRGDYRLADESVVTAYVEATAAVGRQSAPLRVVYTAMHGVGWETAHRVLSAAGFDEPAVVVEQIEPDAAFPTVTFPNPEEAGALDLAFATARSGRAELIVANDPDADRFAAAVPDASTPEGFRRLTGNEVGALLGWRAAEQARREGRSGGALACSIVSSPALGAVATDYGLDFAETLTGFKWISRVPDLVFGYEEALGYLVNPGTVRDKDGVSAALAFLSLASALAAEERTVDDELAAFAERFGLFGSEQISLRVTDLSEIGRIMAGLRATPPIAIGGLAVERSEDLLAEGGALPPTDALRFSLDGARLIARPSGTEPKVKLYLDAWSHEPAATARRSAVSSRLAALRAGAAALLA
>CP028129.1|AZZ49367.1|1944917_1945751_+|purine-nucleoside-phosphorylase
MADLTLHPLDTPDADPFEIAARAAAQIAEATGVEKHDIALTLGSGWGKAADAIGETTATVHATEILGFSQPAVHGHGGTLRSVLLPTGKRALIIGARTHYYEGYGVRRVAHSVRTAAATGASVMILTNGAGGIKEHWTPGTPVLISDHINLTADSPLEGATFIDLTDLYSARLRELARGTRPELDEGVYVQFRGPHYESPAEVQMAKIIGGHIVGMSTALEAIAAREAGMEVLGMSLITNLAAGIQKTPLSHEEVLEAGRDAEDDLARLLTGITSAL
>CP028129.1|AZZ50493.1|1943375_1944812_-|NAD(P)H-quinone-dehydrogenase
MAYEFERAQRIAVLGGGPGGYEAAIAGAQLGAEVTLVERVGVGGSAVITDVVPSKSLIATAEATNAIGEAADLGVQFFTRSEQNKPVRPDVAVNLATVNKRLLGLARQQSEDMRANLVHNGVRIVQGDGRLDGSNALIVSTAAGGEGTDFDRIEADTIIVSVGASPRVLPTAAPDGERILSWTQLYNLTSVPEHLIVVGSGVTGAEFASAYRALGARVTLISSRDQVLPGEDADAAAVIENVFKRNGMVVLSKSRADRVERTETGVQAVLSDGRVVEGSHCLMAVGSVPNTVGIGLEDAGVQLTESGHIRVNRVARTSVPSIYAAGDCTTFLPLASVAAMQGRTGVFHAMGDAVNPTEVRNVAANIFTQPEIATVGWNQREIEEGIAQGEIYKLPLAANPRAKMMGIRDGFVKLFARTGSGTVIGGVIVAPKASELIFPLALAVEHRLTVDQVARAFTVYPSLTGSISDAARAMHIVT
>CP028129.1|AZZ49366.1|1941502_1943269_+|ATP-grasp-domain-containing-protein
MPKITKVLIANRGEIAVRVIRAARDSGIASVAVYADQDRDAVHSRLADEAYALGGTTSAQTYLVIDKLLSVARRSGANAVHPGYGFLAENADFARAVIDAGLIWIGPGPDAIERLGDKVSARHVAEKVGAPLAPGTLNPVSGAAEVLEFVDQHGLPVAIKAAFGGGGRGLKVAREREEIEELFASATREAVAAFGRGECFVEKYLDQPRHVETQCLADAYGTVVVVSTRDCSLQRRHQKLVEEAPAPFLTDEQNAELYRASKAILKEVGYLGAGTCEFLIGKDGTVSFLEVNTRLQVEHPVSEEVTGIDLVREQFRLAEGGALDEADPAPRGHSFEFRINGEDAGRGFLPAPGPVHVFKAPGGPGVRVDSGVVAGDVISGSFDSLLAKLIVTGDSREQALERSRRALAEFEVTGLPTVLPFHRAIVEDPAFAPAGGAPFSIYTRWIETEFENTIPAWSGEPGATPEAAARQNVVVEVDGRRVEVTLPGDFVGSGPARGAAAATPKRRGSSSVSTVTGDSVASPMQATIVKVAVAEGDTVVAGDLVVVLEAMKMEQPLTAHKDGTVTTLNAQAGSTVPAGHVLLHIVSP
>CP028129.1|AZZ49365.1|1940776_1941403_+|septum-formation-inhibitor-Maf
MRLYLASTSPARLALLRAAGIEPVVVPSAVDEPAALARAEQERGAVLDADATVSLLARAKAHAVLNPEVDGLVLGGDSAFVLDGVVHGKPHQPERARERWRAQRGRTGRLHSGHWLIDHRGGRIVAQAGAVTSATVTFAADIDDAEIDAYVATGEPLEVAGAFTIDGRGAGFITAIEGDPSTVIGMSVPTLRSLVRSLGVDWTALWNR
>CP028129.1|AZZ50492.1|1939427_1940666_-|class-I-SAM-dependent-RNA-methyltransferase
MDLDISNVAHGGVFVARHEGRVVFVPDVLPGERVRARVSEVRHDSFWRAEALEVLEASEHRVEHVWPEADLDRRPEERVGGAEFGHADLAYQRELKRLVLVDSFARFARRDVAVEVSPIASDDAAGGLGWRTRNRLHVDDDGRVGPYAARSHHVVTVQSLPLATADSSLVAPLGERLAPGSVVDLVDAAGSEGAAVLVHDPADKRARRDRTVVSEFVAGRTFLVDRTGFWQVHRGAAAALFEAVQAAVDAESADPGAANHDLYGGVGLLAAALADRLGAGVRVTSVESDSRATEHALENLADQVGARAVTARVDRYLRDVLAQADARERSRWRAATVVLDPPRSGAGRAVTEALAELRPAQLVYVACDPVALARDVGALTAEGYDLAALDGFDLFPHTSHVEAVARLVRRGD
>CP028129.1|AZZ49364.1|1938695_1939403_-|DNA-binding-response-regulator
MGRMKPAAHHDAAEGPLVRVAIVDDHESVRLGVAAAVHSAGMQVVAAAETVQALESTIGSAEIEVLVLDLSLNDGSSITSNVKWGQVRGSAVLVHSIADRVVAVREALAAGAAGVIPKSSPMSTVVAAIRTVARGEVLNNLEWASAIDADDDFARAVLGRRERDVLHLYASGLPLKLVADRLQISVSTAKEYLDRIREKYVEIGRPAPTKVDLLRRAVEDGILPGIDPDDGDGGR
>CP028129.1|AZZ49363.1|1937494_1938709_-|ATP-binding-protein
MAGAEASTARRNAGRERIDTIISTVVSFFGFGFGVQTVPPILAQLPLLRPEVAWPVLVLVFGSLSGAVVTAVLRRGSRVTAVLVAVGVFVAVVTWPAAVAPGVASRETPWVWYLLTIGTAFCTIAAPLRVAIAYAGVTTVLFGVLRVLPSGGGADPTRAILDAAYVGIVGFVMLVLITVLRQSADQVDRAQTTATQQYEAAMRQHAGEVERVEVDALVHDNVLATLLSAASAESPAERALVSSMAQRTLAVLLPDHDPETPEGLVPLERLHRRLALAASTFGTEMAVKTAEGVDPRRTTLPRSVAEALLGAVNQALANSVQHAGPSGSVLRVVHGLLGDGVLEIVVEDNGRGFRLADVPRERLGIRLSILERVHNARGIARIDSAPGEGTRVVLSWHATAGSAR
>CP028129.1|AZZ49362.1|1936412_1937498_-|hypothetical-protein
MIAYPRPLLQGLGAGFSIYHVVLAFFSFRLSPATPADLIAVALYVAATVVALWPGATTRLALPVAIGMAVVSVALPLLVSPSLDPAASNGYSTWYIAAVGTLMTIVCARRRPVCAWIGVGFLIVHTLVWAGPAALATLGVVGGIAWVAIAQLLIVELGRAGSEARVLAAAERAAASWRAAEEAHLTEREVRLEQTRALASDMLLRIAQPGPGLSDDERRECRLLEAAVRDEIRGRRLLDDEVRRLVLDARRRGVSVSVLDDGGLDRSSESESRRVLGELARALDSIREEVDRVVVRTASADSASAVTVVGLRTAGDGSAGALGSDDPGDEVDAWVEIRRDGPSERDTWPDGTPDQAGHLTR
>CP028129.1|AZZ49361.1|1935857_1936079_+|acyl-CoA-dehydrogenase
MVAIESAPAVVISTPGLGAAEIAAVTAVVTAVASRSETEPETPREFSGGWNDRAGAVRSPLRPALGAWRSFSG
>CP028129.1|AZZ49369.1|1947817_1948090_-|PTS-ascorbate-transporter-subunit-IIB
MKIVTLCGAGIGTSAILKLGAERALETLDLEAEVIASDLSSVDALAADAQVILTSSELVDHIGRTFAEVVIIDNYLDQNEITAKIEKALG
>CP028129.1|AZZ49370.1|1948086_1948563_-|PTS-ascorbate-transporter-subunit-IIA
MPLDALPEEAVALRHSAGSWREAVLEAGRALERTGAVDAAYSRRMVEQVDVLGPYIVLAPGLALAHARPGNDVFADGLSVVTLAEPVAFGHSTNDPVSVVIGIAATRAHGHLGFVSGLADVLSRPDAVGALAAARTVRSINAVLTDDTPHHPHQGRSA
>CP028129.1|AZZ49371.1|1948565_1949687_-|adenosine-deaminase
MTDQTEEYLLPGQGILIDELPKVSLHDHLDGGLRPATIVEIGRETGVPLPAEEPEALAEWFRATADSGSLTDYIATFETTVAVMQTAPALERVAREFVLDLAADGVVHGEVRWAPEQHQRAGLTLDQAVEAVQEGLQQGIQEAAEQGYRLRVGQLISAMRHADRSLEIAELALRHRERGVVGFDIAGAEAGFPASRHRAAFELLAAAHFPTTVHAGEADGLDSIRSALLDGRALRLGHGVRLAEDIRIERQDDDASYVTLGELSEWVKDREIALELSPSSNLQTGAIAAWGSELIDHPFDLLYQLGFRVTVNTDNRLVSATTLSRELALLSDTFGYDLDDIETFQLNAAHAAFLPLDERRDLVETISAGFEAA
>CP028129.1|AZZ49372.1|1949891_1951199_-|thymidine-phosphorylase
MTRSTSVEAFDAVDIIRVKRDRGTLSTAQIDWLIDAYTRGYVADEQMAAFAMAVLLNGMERDEIRDLTLAMIASGERMRFDGLGKRTVDKHSTGGVGDKITLPLMPLVASFGVAVPQLSGRGLGHTGGTLDKLESIPGWRADLGNEEMLEQLRTVGGVICAAGSGLAPADKKLYALRDITGTVEAIPLIASSIMSKKIAEGTDALVLDVKFGSGAFMVDRERSRELARAMVDLGNDAGVRTTALLTNMNVPLGLAIGNANEVRESVEVLAGGGPADVRELTVALAREMLALAGQPDADVERALDGGVAMDTWRAVIRAQGGDPDAALPEARETSVVLAERDGVLVEQQALPFGIAAWRLGAGRARQSDAVQHAAGVDLHAKPGDAVRAGQPLFTLSADEPERFARALEALEGAHRIGDEGDEVLDGGPLVAERVS
>CP028129.1|AZZ49373.1|1951235_1951640_-|cytidine-deaminase
MTDIDWEALRAAAVDAMSHAYVPYSTFPVGAAALVDDGRVISGCNVENASYGLTLCAECALVSALHMTGGGRLVAFTCVDGKGGALMPCGRCRQLLFEHSAEGMLLQTVSGVKTIDEVIPDAFGPRTLEAYAAQ
>CP028129.1|AZZ49374.1|1951651_1952917_-|ABC-transporter-permease
MSTAAATAPDRIVIRSWKAPIAFGIFALLAVVLFVALGREGTSSFRLAAGTDFFALPDIPFPTRGTGVVVAILLVALAVVAAALTRAGRRIPLWLSAAFALVFLIGFLVWASAGAALPLSGLLLGTVGLATPLIFGSLGGVISERVGVVNVAIEGQLLAGAFTAAMVSSLTRQPVLGLLAAMLASVLVSFVLAAFAITYVVDQVIVGVVLNVLVTGLTSFLYSQVLSTDAPTFNSPVKFDRLPIPVLSQVPIVGAVLFNQTVIVYLMYVAIVAVWWGLFRTKWGLRLRAVGEHPQAADTVGIDVARTRFWNVSLAGAIAGVGGAYYTLDAVGAFGKEMTAGAGFIALAAVIFGRWDPIKATLASLLFGFATNLQNVLGVIGSPVPSEFMLMLPYVVTIFAVAGLVGQSRGPAAAGKPYLKS
>CP028129.1|AZZ50494.1|1952913_1954065_-|ABC-transporter-permease
MSVLAVLLSLIAGGVLIAATDKEVQAASGYFFARPLDTLQAIWQSVSGAYSSLFQGSVYNFRREGFANGIKPLTDTVAFATPLIAGGLGVALAFRVGLFNIGGRGQMLIAAACAGWVGFSFDLPWGVHLLVTLAAGILGGALWGGLVGVLKARTGAHEVILTIMLNYVAFYLISYLLRTPGALQAPGSNNPKSPGMKETAVFPALLGPGYSLTLGFVFAVLATVFVWWLLNRSRIGFKFRAVGENPHAARVAGIDVKNSYVSAMLLSGGLLGLAGSAQVMGTVTTGFTSGIDAGIGFDAITVALLGRSRPWGVFFAGILFGAFKAGGYSMQAAEGVPIDVVLVVQSLIVLFIAAPPLVRAIFRLPTPGAAPKRRTRRTSEVSA
>CP028129.1|AZZ49375.1|1954220_1955741_-|ABC-transporter-ATP-binding-protein
MKLELRGITKRFGALVANDHLDLTVEPGEIHCLLGENGAGKSTLMNVLYGLYQAEEGEILLDDVVQHFSGPGDAMKAGIGMVHQHFMLVPVFTVAENVMLGHEETKAGGRLDLAAARARVREISDRFGFDVDPDALVEDLPVGVQQRVEIIKALSRDARLLVFDEPTAVLTPQETDELIAIMRQLRASGTAIVFITHKLREVREVGDRITVIRLGRVVGEASPTASNAELASLMVGRAVELTVQKEQAAPGDEALVVSNLTVRDANGQAVVDDVSFEVRRGEILAIAGVQGNGQTELTEAILGLHERVEGSVTLDGRRLDGLSVRRVLESGVGFVPEDRTEDGLVAEFTIAENLMLDRSDRGPFVKGLGLRLKELERFAEERVREFDVRAQGIGTHVGRLSGGNQQKVVLARELSRELRLFIAAQPTRGIDVGSIEFVHKRIVETRDTGVPVIVVSTELDEVAALADRIAVMYKGGIIGIVPADTPREVLGLMMAGQTPAEKGAAA
>CP028129.1|AZZ50495.1|1955887_1956973_-|BMP-family-ABC-transporter-substrate-binding-protein
MTITSRKAAFGALAALSVTTLLAGCASAPEQSGSSAAAGGNFLPCMVSDAGGFDDKSFNELGYTGLVKASEALGVTPKTVTSESETDYAPNLTSLVDQGCNLIVTVGFALAEATSAAAEANSDIDFAIIDDATIDLPNVKPITFDTSQAAFLAGYAAASSSTTGVVGTYGGQQFPTVTIFMDGYADGVKYFNKQKGKDVKVVGWDVDAQTGSFTGGFAAGVEAKSAAQSLIDQNADVILPVGGPIFQSAIEAIRDSGKDIAMVGVDADLYETYPDGGDLYLTSILKGIEAGTTDVTSSAGADNFDATPYVGTLDNDGVGIAPFHDFESKVSGDLKGELATITAGIIDGSITVTSPSAPKAS
>CP028129.1|AZZ49376.1|1957371_1958775_+|hypothetical-protein
MSVQVAQTQTLHRASLDRWKARHFAPATPTDPRLSAVIRSAKELPTYAALYADSSDAIDAVINGSASDPSAALRALPLVDKETARSITSDALHERREHFSHYFETSGTTSRPMATPKGPFDIATTTVTFGENWSEIIEAGSTALILINSPQGPAAFQFERALNYLGLLTFRTWVDTYRNDYDRVLDTIENLRPDVVAGPPSQVLNLYQRASDAGRAAPTFRSVLLLGERSTPGLKRRLAELSRGRVHDAAYGSSETGTLAVAASPGLRLQTHGFLFEIRDRSTGLLSLVSDQDDCAGELIVTPLDLLLRPLIRYDTGDVVRITRAPSGEHLVTPLGRACDATPLPDVAIDQQECEDLLWPIGERSPVLNYMFVARDDGNALLVTSTEGTSWESSPVGRAIRERLSGIALVTCDHLPAISGLGSALGWKASRFLDLRCTAESGPAGLTESLRSAARRQVDALVSGDVD

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

534485 : 540834

Lactococcus_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZZ48239.1\|534485_534767_+	DUF3263 domain-containing protein	A0A1B3AZ99	Gordonia_phage	6.1e-06	38.2
AZZ48240.1\|534811_535354_+	hypothetical protein	NA	NA	NA	NA
AZZ48241.1\|535522_535726_+	cold-shock protein	Q9AZD3	Lactococcus_phage	5.8e-14	57.8
AZZ48242.1\|535904_537527_+	chaperonin GroEL	A0A240F779	uncultured_virus	1.5e-149	54.9
AZZ48243.1\|537633_539286_-	HAMP domain-containing protein	W8CYF6	Bacillus_phage	1.6e-16	25.7
AZZ48244.1\|539356_540046_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.0e-38	38.2
AZZ48245.1\|540135_540387_-	hypothetical protein	NA	NA	NA	NA
AZZ48246.1\|540453_540834_+	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	8.3e-06	38.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage