CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP028130	Rathayibacter iranicus strain NCCPB 2253 chromosome, complete genome	2 crisprs	cas3,csa3,DinG,DEDDh,WYL,Cas9_archaeal	0	0	2	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP028130_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028130_1

1387995-1388100

Orphan

Consensus_repeat	Method
TGCGACAACTTTTGAACACTCGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028130_1

>merge|CP028130|1|1387995-1388100|CRISPRCasFinder
TGCGACAACTTTTGAACACTCGCGGCCGCCCGCGCCCGCGAGAGCCGGCGAGAAGCCAAAAGTTGTCGCGCTCGGCGTCGAGTGCGACAACTTTTGGACACTCGCG

>CP028130|1|1|1387995-1388100|CRISPRCasFinder
TGCGACAACTTTTGAACACTCGCG	GCCGCCCGCGCCCGCGAGAGCCGGCGAGAAGCCAAAAGTTGTCGCGCTCGGCGTCGAG
TGCGACAACTTTTGGACACTCGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP028130.1\|AZZ55555.1\|1377415_1378093_+\|hypothetical-protein	unknown	unknown	unknown
CP028130.1\|AZZ55571.1\|1395238_1395757_+\|O-acetyl-ADP-ribose-deacetylase	unknown	unknown	gnl\|CDD\|234759
CP028130.1\|AZZ55557.1\|1378702_1379437_+\|hypothetical-protein	unknown	unknown	unknown
CP028130.1\|AZZ55564.1\|1388219_1389113_+\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
CP028130.1\|AZZ55566.1\|1389747_1391226_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|237797
CP028130.1\|AZZ57355.1\|1382521_1383628_-\|magnesium-and-cobalt-transport-protein-CorA	unknown	unknown	gnl\|CDD\|213364
CP028130.1\|AZZ55573.1\|1396925_1397159_-\|hypothetical-protein	unknown	unknown	unknown
CP028130.1\|AZZ55565.1\|1389109_1389760_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
CP028130.1\|AZZ55562.1\|1383819_1384968_+\|exonuclease-SbcCD-subunit-D	unknown	unknown	gnl\|CDD\|273178
CP028130.1\|AZZ55559.1\|1379847_1380141_+\|hypothetical-protein	unknown	unknown	unknown
CP028130.1\|AZZ55572.1\|1395857_1396250_-\|PPOX-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274679
CP028130.1\|AZZ55567.1\|1391194_1393351_-\|ATP-dependent-helicase	unknown	unknown	gnl\|CDD\|350677
CP028130.1\|AZZ55568.1\|1393650_1394013_-\|hypothetical-protein	unknown	unknown	unknown
CP028130.1\|AZZ55560.1\|1380300_1380555_-\|hypothetical-protein	unknown	unknown	unknown
CP028130.1\|AZZ55561.1\|1380838_1382368_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|239559
CP028130.1\|AZZ55558.1\|1379473_1379851_+\|DUF4237-domain-containing-protein	unknown	unknown	gnl\|CDD\|379424
CP028130.1\|AZZ55556.1\|1378203_1378569_+\|hypothetical-protein	unknown	unknown	unknown
CP028130.1\|AZZ55570.1\|1394351_1395242_+\|homocysteine-S-methyltransferase	unknown	unknown	gnl\|CDD\|181899
CP028130.1\|AZZ55563.1\|1384964_1387901_+\|SMC-family-ATPase	unknown	unknown	gnl\|CDD\|223496
CP028130.1\|AZZ55569.1\|1394076_1394355_+\|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|376835

Protein	Function_ID	Function_description	E-value
CP028130.1\|AZZ55562.1\|1383819_1384968_+\|exonuclease-SbcCD-subunit-D	gnl\|CDD\|273178	TIGR00619, Nuclease_SbcCD_subunit_D, exonuclease SbcD. All proteins in this family for which functions are known are double-stranded DNA exonuclease (as part of a complex with SbcC homologs). This complex functions in the initiation of recombination and recombinational repair and is particularly important in regulating the stability of DNA sections that can form secondary structures. This family is likely homologous to the MRE11 family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). [DNA metabolism, DNA replication, recombination, and repair].	5.6916e-46
CP028130.1\|AZZ55564.1\|1388219_1389113_+\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	1.12915e-93
CP028130.1\|AZZ55567.1\|1391194_1393351_-\|ATP-dependent-helicase	gnl\|CDD\|350677	cd17919, DEXHc_Snf, DEXH/Q-box helicase domain of DEAD-like helicase Snf family proteins. Sucrose Non-Fermenting (SNF) proteins DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	6.59991e-48
CP028130.1\|AZZ57355.1\|1382521_1383628_-\|magnesium-and-cobalt-transport-protein-CorA	gnl\|CDD\|213364	cd12830, MtCorA-like, Mycobacterium tuberculosis CorA-like subfamily. This bacterial subfamily belongs to the Thermotoga maritima CorA (TmCorA)-like family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subfamily includes the Mg2+ transporter Mycobacterium tuberculosis CorA (which also transports Co2+). Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by a related protein, Saccharomyces cerevisiae Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.95736e-146
CP028130.1\|AZZ55566.1\|1389747_1391226_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|237797	PRK14713, PRK14713, bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase.	0
CP028130.1\|AZZ55572.1\|1395857_1396250_-\|PPOX-class-F420-dependent-oxidoreductase	gnl\|CDD\|274679	TIGR03618, Rv1155_F420, PPOX class probable F420-dependent enzyme. A Genome Properties metabolic reconstruction for F420 biosynthesis shows that slightly over 10 percent of all prokaryotes with fully sequenced genomes, including about two thirds of the Actinomyces, make F420. The Partial Phylogenetic Profiling algorithm identifies this members of this protein family as high-scoring proteins to the F420 biosynthesis profile. A member of this family, Rv1155, was crytallized after expression in Escherichia coli, which does not synthesize F420; the crystal structure shown to resemble FMN-binding proteins, but with a recognizable empty cleft corresponding to, yet differing profounding from, the FMN site of pyridoxine 5'-phosphate oxidase. We propose that this protein family consists of F420-binding enzymes. [Unknown function, Enzymes of unknown specificity].	3.55273e-32
CP028130.1\|AZZ55565.1\|1389109_1389760_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	6.92289e-63
CP028130.1\|AZZ55561.1\|1380838_1382368_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|239559	cd03477, Rieske_YhfW_C, YhfW family, C-terminal Rieske domain; YhfW is a protein of unknown function with an N-terminal DadA-like (glycine/D-amino acid dehydrogenase) domain and a C-terminal Rieske domain. The Rieske domain is a [2Fe-2S] cluster binding domain involved in electron transfer. It is commonly found in Rieske non-heme iron oxygenase (RO) systems such as naphthalene and biphenyl dioxygenases, as well as in plant/cyanobacterial chloroplast b6f and mitochondrial cytochrome bc(1) complexes. YhfW is found in bacteria, some eukaryotes and archaea.	6.29917e-29
CP028130.1\|AZZ55558.1\|1379473_1379851_+\|DUF4237-domain-containing-protein	gnl\|CDD\|379424	pfam14021, TNT, Tuberculosis necrotizing toxin. This is the C-terminal domain secreted by Mycobacterium tuberculosis (Mtb). It induces necrosis of infected cells to evade immune responses. Mtb utilizes the protein CpnT to kill human macrophages by secreting its C-terminal domain (CTD), named tuberculosis necrotizing toxin (TNT) that induces necrosis. It acts as a NAD+ glycohydrolase which hydrolyzes the essential cellular coenzyme NAD+ in the cytosol of infected macrophages resulting in necrotic cell death. CpnT transports its toxic CTD from the cell surface of M. tuberculosis by proteolytic cleavage, where the toxin is cleaved to induce host cell death. Structural analysis determined that the TNT core contains only six beta-strands as opposed to seven found in all known NAD+-utilizing toxins, and is significantly smaller, with only two short alpha-helices and two 3/10 helices. Furthermore, the putative NAD+ binding pocket identified Q822, Y765 and R757 as residues possibly involved in NAD+-binding and hydrolysis based on similar positions of catalytic amino acids of ADP-ribosylating toxins. While glutamine 822 residue was detected to be highly conserved among TNT homologs.	1.20581e-22
CP028130.1\|AZZ55571.1\|1395238_1395757_+\|O-acetyl-ADP-ribose-deacetylase	gnl\|CDD\|234759	PRK00431, PRK00431, ADP-ribose-binding protein.	4.4575e-83
CP028130.1\|AZZ55570.1\|1394351_1395242_+\|homocysteine-S-methyltransferase	gnl\|CDD\|181899	PRK09485, mmuM, homocysteine methyltransferase; Provisional.	5.94232e-116
CP028130.1\|AZZ55563.1\|1384964_1387901_+\|SMC-family-ATPase	gnl\|CDD\|223496	COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair].	2.60455e-64
CP028130.1\|AZZ55569.1\|1394076_1394355_+\|metal-sensitive-transcriptional-regulator	gnl\|CDD\|376835	pfam02583, Trns_repr_metal, Metal-sensitive transcriptional repressor. This is a family of metal-sensitive repressors, involved in resistance to metal ions. Members of this family bind copper, nickel or cobalt ions via conserved cysteine and histidine residues. In the absence of metal ions, these proteins bind to promoter regions and repress transcription. When bound to metal ions they are unable to bind DNA, leading to transcriptional derepression.	6.69921e-20

>CP028130.1|AZZ55563.1|1384964_1387901_+|SMC-family-ATPase
MRIRRLAFAGLGPFRSVQCIDFDRLEDVGIYLIAGRTGAGKSTILDAISFALYGSVPRFDGAATRLRSDHSGAEDETFAELDFEAAGHLYRVRRSPEYERPKRRGTGTTTQAAKVALLEHTDGAWVGLSTSAKEVGVDIARVVGLTKDQFLQVILLAQNRFHEFLLARNDDRQRLLRTLFATERFDLLRRRLLEQRDASAVGLEEERAAVTALADEAARLVDADGEQSVPGAAWFAELPGRLTGPLEAARAEASAADAASAGASAALDDARRVSRGQERRRLALIEAEELAVAEAHVLQQRTAIERARRADGVLPLLRSARAAGEKEAVARQQRDVAAEAYLSTAEDAGAPAAETAERLARTLGALTEALADERRLPGATLEAERAAHAEQAAAAALAALEEELHELPRRADAVAAEEESLAAEAAAVSVRSGELADTERRIEAARERDLAATAVQRLRTAYTEAARVHGERAAEQAALIARRFAGFAGELAERLEPGEPCPVCGSCEHPRPAEHEGPSTVGTADLDRARAAVERAAADLDSAREHEGSAALALAALEERVGDATELESLRSAQEGRLAAARIAARRTDELHRERVTLRARIEALTIERDTSRTEHQARAGEAALAAEALRLLRERVAASRDGAVSIAARAESLTAQRRRAVALVDAEEAVLTRGEAADAARAELAEVLAERGFATVEEAESAALASGERARAEAAVADHERRCSATEAVLTDPELSGLPARAVNVLAAETEARVASARRDEARDRLSVLEHRSARLADLVERAAGRLGTLDERFRRHEELRALAETVSGRGQNTRRMDLEAFALAGRLEEIVAAANLRLDAMTSGRYALAHDDSLAYRGAASGLGIDVLDAFTGVRRQPASLSGGETFLASLALALGLADVVTAQSGGISLETMFIDEGFGSLDGETLETALGTLDALRSGGRTIGLISHVDTMRERLPVGLRVVVGPRGDSTILTD
>CP028130.1|AZZ55562.1|1383819_1384968_+|exonuclease-SbcCD-subunit-D
MKLLHTSDWHIGRTFHGHSTLAALGLVLDALVETVRAERIDAVLVAGDVFDSAVPAAEHFTLLTRTLEAIRAAGADVVLTSGNHDSPARLGFQAGLLRSSGVHVLTDPEAYAEPVVVRDASGLEVGVYGIPFLEPALYRHRHPEESLRRHEEVLAFAMGRVRAAAEAAGRPWVVLAHCFAVGAPAAVLERDITAGGLDYVSVEHFAAADYAALGHIHGRAELLPNVRYCGAPLHYSFGEAAKPRGGWLVTIGAEGLEGVEWSPLPVPRRLSVIEGRLAELLADPSLAEFEADWVSAVLTDAVRPLDAMASLQARFPGCATLEHRPPHAAAEPRAYAERIRGRSDVDVVDDFLAHVRGGHGATATERALTLDALAAVDAEALR
>CP028130.1|AZZ57355.1|1382521_1383628_-|magnesium-and-cobalt-transport-protein-CorA
MLGLGSRTRAAAEDTTPLRRLVPEDEPARTSTVDNAIYQDGRRVVSPSSIPEALAALQKLPDAMAWIGLYRPNAAELAALEDEFSMHPLALEDAISAHQRPKLERYGSDMFVVLRAASYSDQREEVDFGELHLFVGANFVVTVRHSEKPDLSLVRRRMEADPEMLRIGPVAVLYAILDAVVDQYSPVVAGLENDIDEIEAQVFEGDPAVSRRIYELSQEVLDFQRAVAPLTGMLARLVTDFEVFQSDVELRRYIRDVADHVAVVTERVEGFRTTLREILAVNATLVAQRQNEDMKKLAEVGNQQNDEVKRISAWAAIFFAPTMISSIYGMNFDEMPELHVSWGYPASLVAMVISSVVLHRLFTRRGWL
>CP028130.1|AZZ55561.1|1380838_1382368_-|FAD-dependent-oxidoreductase
MTPDAATTSELSAPPPLSLWRAGAARIPSDEFVPEAHYDDVVVGAGLSGLITALLLQRSGRRVLVLEAREVGAVTTGNTTAKLSLLQGSHLSMIAARNTPAVTEAYVAANLAGFRWLVDYLDTAGVPVQRRTAYSYAQTPEGVAAVLKEHATARRFGLATRLVGTLDVPFPSTAAVALDDQAQFDPMEVLTALAADFRAAGGTLVQGVRVLGMRATAPVRVRTSAGRVTGDRAYLLTGAPILDRGLYFAKVVALRSYAVAFRTDAPIPDGMYLSVDEPSRSVRDVERDGERLLLIGGNGHTVGRRSATSEAVEDLIAWTRRSFPGAEPVAQWSAQDYEPFHRVPFVGWLPRGRGRIFLATGYDKWGMTNAVQAALTLVADLEGETPAWAKTLHRRPTLPRVLAEGVGAGAAIGAWYARGWFGALRAPRSAGVIPREGQGSLARDGVQPVAISTVDGRRCAVSAICPHLGGIVTWNNSERSWDCPLHGSRFAADGSVLEGPAVNPLSPSY
>CP028130.1|AZZ55560.1|1380300_1380555_-|hypothetical-protein
MQMAMYLIVRKKLLSKRFFAQWKTFMQPQKLPAKIQRSKGESRASLEDASLYPPGQNPLIVGSWRGRLDAVEGWAMGVYFQANF
>CP028130.1|AZZ55559.1|1379847_1380141_+|hypothetical-protein
MTTEDFVQRMSFLGYSREAALDTVWIASNPRDLTGREFNIVPVDDDQYEILKPSDRAGYFPAMMDDGGDFKGTLDEAFEYILEVSKRRKLRWERSRF
>CP028130.1|AZZ55558.1|1379473_1379851_+|DUF4237-domain-containing-protein
MGRPRWRWPADPPHTNGFTEGLSQPADLVSGDVIERITFLNKDGLPLDGNFAAPPGTPFDQLSLPPDRLNGSTIRLNYRVLRPLPDGVQMGEIAPGFEQRSGGTQYYFPGGLERLVKLGYIEEIK
>CP028130.1|AZZ55557.1|1378702_1379437_+|hypothetical-protein
MVTGVFTLATSDEARSQLWNQLTTMVGQVASGDAFVIGQIAGNLLPLGAATEVAKLDTLLNKTEDLGGLVTKADDLGFGKHVTTATANDATSALDWLKNHLGAGGVTVSDEFTPTIRPADTIDGSTVKSDSVVVSNTTDTVKHALTATRDDLLNALGNAEKKLGEVGQNIHPAPALAGGGTLPPGTPLTDFGGGSSGDPGAVPASGVHDGMFENSAVQIFAERLSDGVDRADIPGYDPTGGLGR
>CP028130.1|AZZ55556.1|1378203_1378569_+|hypothetical-protein
MLLDSKGEFAISLSRLPEGKRLRDDLPGSWADLFLQAAGSAAAMMIEVRKQNLDGSESLYRLARLLPEDEQSTGTADITWNGRVDRVPAEEAFDAVEAGDIFWHYYQYDAVPERYELRFLE
>CP028130.1|AZZ55555.1|1377415_1378093_+|hypothetical-protein
MTKVTKLDTLLNKTDDLGRLITKADDLGFGKHVSIATVSDATSAMDWLRNHLGSAGVTVSDEFTPTIRPADGVQSVVDKIRRGELTPEEIKALPDTIREQLRGIDRGDKRDIFGHYTGSDTVSANKEALGLEKVRDRMGVEVISDRVGVRLEAGGQLRYYDGLIHLGGNRYIGVEVKSGNAILEYQRGGNSQRLFDSGVSSENPARGILNGEPIEIVEVILQEIP
>CP028130.1|AZZ55564.1|1388219_1389113_+|hydroxyethylthiazole-kinase
MSIRTPVHPSPAACVGRDLDALRASPPLVQCITNAVVAGFTANSLLALGATAAMCDLPGEAGVFAAIASATLVNLGTPGAEQREGAREAVASAARAGTPWVLDPVAVGPLPVRTAFAAELLGAGPAIIRGNASEILAVAGAGAGGRGVDSVDTAEQALDSARDLAQRTGAVVAISGAVDVVTDGEQVLRVTGGHPLLTRITGGGCALGAVMAAFLGVERTDAQRTDAHGTGAHGRDAHGTGERGRALDAAVTASVIWGLAAERAATASSGPGSFALALLDALASLESTDVVAGARIA
>CP028130.1|AZZ55565.1|1389109_1389760_+|thiamine-phosphate-synthase
MSADLSLYLVTDTAQCGSRGVPAVVAAAVAGGVGTVQIRDHAASAADLVALTCAVAAVLDGHTSVTLLVDDRVDIVLAARLNGARVDGVHLGQSDLPAAAARAILGPDAILGLTANTAKHLAAVHALPSGTVDYLGVGVIRPTATKPDHPAPLGLDGFATLAAATPLPCVAIGGVTVADAAPLRQAGAAGLAVVSALCTAEDPEAAARRFRAGWDR
>CP028130.1|AZZ55566.1|1389747_1391226_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MGPVIPRILSIAGTDPTGGAGIQADLKSIGALGGYGMAVVTALVAQNTRGVRSLHLPPAAFLREQLDAVGDDVVIDAVKIGMIASAEYAGVIAGWLDELRPPIVVVDPVMVSTSGHRLLDPDAEEAVRDLLRQAHLVTPNLAELGVLVGAPTSTEWPTALEQGVTLARVLDAAVLVKGGHLAGPTTPDAIVTPNGRIREVPGERIATANTHGTGCSLSSAMATLLAGRGTSSDALVEALIEAKEWLKGALRGADALEVGSGVGPIDHFHRLRAPAFCAGVWAETRTLRREIDELPFLRTLGDGTLDREDFEWFLEQDALYLTEYARVLAVAAQRAPTTAEQIFWAEGSASAVAAEAQLHRTRLGTREAAAAPVTRGYIDHLQAVGARGGYGEIVAALLPCFWLYADAGTRLATTNRPGHPYADWLSTYGDPAFAAATERAIALTEQAAANATPQDRAAMRDAFLRSSLFERDFFAAPLSRSPLSRSPHEGHA
>CP028130.1|AZZ55567.1|1391194_1393351_-|ATP-dependent-helicase
MARGTQRQSGQTRRTSSAAGSRPRSRSRGVDNAGLIPILARRVREVEAKAQTGKVGPTNRTKFLVIALLMREERKRVKVDSSLSDAQRTEEMKRLDGIATILAKTAARDTSLIALLESEAGITPAAQKLRRDWLLEAGAELSPDELLIVTEPEPTPEVPENQVVPQSVRARQLANPFLPPDFSIAEVAAPAPRRRLDDWELLGPLFKAFEYGAGGRAASMELPEPPTLDRLSPRGRELMPHQARFIESAREGHRSFLLADEPGLGKTAQSLLAASVTGSYPLLAVVPNVVKMNWAREVEHWTPQRRATVIHGDGRTLDAFADVVIVNYDILDRHIGWLGSLGFRGMVVDEAHFIKNLRSQRSQSVLALASRIRESTPGRDPLMIALTGTPLINDVDDFRAIWRFLGWIDETKPGTELMGRLEETGLTPADTGFYPEAREAVIDLGIVRRKKIDVAADLPSKRIVDLPVELDDDLGRSIEKAERELGARMLQRFRAVTASITHELDDDERERFIRIVAQSELEESKSAKTGENVFTMVRRIGQAKAALAADYASQLARSVGKVVFFAKHIDVMDQAEDTFEKRELASVSIRGDQTAAFRQTQIDAFNEDPDVSVAVCSLTAAGVGVNLQASSNVVLAELSWTSAEQTQAIDRVHRIGQEEPVTAWRIIAAHTIDAKIAELIDAKAGLAARALDGADAEIASADTVQLDALMHVLREAIG
>CP028130.1|AZZ55568.1|1393650_1394013_-|hypothetical-protein
MSTRKSTRASADRYPSRAQARMALAPGILAAIVLLAGLALVGTDAYDVIRYPVAILAAVIGWFAIQGRALLWLIGLVPVLVLWNPVVPFTFPDAVWSSLSLAAVGVFVSAGLIIRVPTPE
>CP028130.1|AZZ55569.1|1394076_1394355_+|metal-sensitive-transcriptional-regulator
MIEDIKKRSLHRARILGGQMRGLERMIENEDYCVDIVTQSLAIQKSLGSLNKLIVENHLRTHITAMFEEGGDAREAAIAELVTIFDLSHNRS
>CP028130.1|AZZ55570.1|1394351_1395242_+|homocysteine-S-methyltransferase
MSAAADLLAAAAEWPVLIDGGLGTELEDRGAATGSALWSARVLLDEPDRVRDAHRAFAAAGARVAVTASYQVSASGFAAAGLSAALAEQALRESIRIAREAQDGWVAASVGPYGASLADGSEYRGDDALTVAELAEWHGPRLRTLAAAAPDVLAVETIPSVREVRAVVAALRGSPVPAWISVSARDGSTAAGEPLADAFAAAAASDEVIGVGVNCCPPGDVADAIRIARSVTDKLVVAYPNSGEKWNARERRWTGDAAFEPALVTSWRDAGAGLIGGCCRVGPAALAALGRSLGES
>CP028130.1|AZZ55571.1|1395238_1395757_+|O-acetyl-ADP-ribose-deacetylase
MTILTAVRGDITRERVDVIVNAANSSLLGGGGVDGAIHREGGPEILEECRRLRATRLPDGLPAGAAVATTAGRLPARWVVHTVGPVFSRADDRSAVLASAYTESVRIAQHLGARSIAFPAVSAGVYGWPMTDAARIAVEAVRTITTPDGSPDEVRFVLFSDDALAAFAAALD
>CP028130.1|AZZ55572.1|1395857_1396250_-|PPOX-class-F420-dependent-oxidoreductase
MTDVIPSSHLDLLTKPVFCHFTTLRSDGWPQTNPMWFSWDGVHLRLTGTTTRYKHRNILRDSRVTLCISDPEKPYRYLEVRGIVVDIADDSDGRFFAELAARYGMRMDGPPGDVADRVVYRIKPDRSSRQ
>CP028130.1|AZZ55573.1|1396925_1397159_-|hypothetical-protein
MVTPIKKQPGEEHLPDHAKQHDRFVDTRRYVIERTTAHIKTWRIFRTDYRRPLRTFRDAFNAVRGLIFFTQQETHFA

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Crispr_ID: CP028130_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP028130_2

1861226-1861349

Orphan

Consensus_repeat	Method
GACGACAACGCCGCAGATCACCCCACCAGGGCCCGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP028130_2

>merge|CP028130|2|1861226-1861349|CRISPRCasFinder
GACGACAACGCCGCAGATCACCCCACCAGGGCCCGCGAGGTGAGCTGCAAGGTGGAGGAAGGCGCGATACCGGAGGTATCGCAACCGACGACAACGCCGCAGATCACCCCACCAGGGCCCGCGA

>CP028130|2|2|1861226-1861349|CRISPRCasFinder
GACGACAACGCCGCAGATCACCCCACCAGGGCCCGCGA	GGTGAGCTGCAAGGTGGAGGAAGGCGCGATACCGGAGGTATCGCAACC
GACGACAACGCCGCAGATCACCCCACCAGGGCCCGCGA

Protein	Signature genes	Signature genes Name	Protein_function
CP028130.1\|AZZ55918.1\|1852464_1853403_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372611
CP028130.1\|AZZ55932.1\|1867173_1867983_+\|class-I-SAM-dependent-methyltransferase	unknown	unknown	unknown
CP028130.1\|AZZ55930.1\|1865107_1865773_+\|hypothetical-protein	unknown	unknown	unknown
CP028130.1\|AZZ55923.1\|1858720_1859905_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|236492
CP028130.1\|AZZ55935.1\|1870254_1870860_-\|FABP-family-protein	unknown	unknown	gnl\|CDD\|378046
CP028130.1\|AZZ55936.1\|1871041_1871302_-\|hypothetical-protein	unknown	unknown	unknown
CP028130.1\|AZZ55933.1\|1867986_1869117_-\|FUSC-family-protein	unknown	unknown	gnl\|CDD\|226614
CP028130.1\|AZZ55920.1\|1854832_1856149_+\|DUF4032-domain-containing-protein	unknown	unknown	gnl\|CDD\|379077
CP028130.1\|AZZ55928.1\|1863412_1864054_+\|phosphate-transport-system-regulatory-protein-PhoU	unknown	unknown	gnl\|CDD\|273990
CP028130.1\|AZZ55916.1\|1851747_1851945_-\|hypothetical-protein	unknown	unknown	unknown
CP028130.1\|AZZ55917.1\|1852003_1852237_+\|hypothetical-protein	unknown	unknown	unknown
CP028130.1\|AZZ55934.1\|1869125_1870343_-\|folate-binding-protein	unknown	unknown	gnl\|CDD\|223431
CP028130.1\|AZZ55921.1\|1856205_1857225_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	unknown	unknown	gnl\|CDD\|223640
CP028130.1\|AZZ55931.1\|1866372_1867125_-\|phosphoglyceromutase	unknown	unknown	gnl\|CDD\|184519
CP028130.1\|AZZ55929.1\|1864538_1865117_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379112
CP028130.1\|AZZ55927.1\|1862023_1863193_-\|two-component-sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|274368
CP028130.1\|AZZ55919.1\|1853643_1854720_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	unknown	unknown	gnl\|CDD\|236947
CP028130.1\|AZZ55924.1\|1859910_1860393_-\|CarD-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224248
CP028130.1\|AZZ55922.1\|1857214_1858663_-\|cysteine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234705
CP028130.1\|AZZ55925.1\|1860424_1861117_+\|DNA-modification-methylase	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP028130.1\|AZZ55918.1\|1852464_1853403_-\|hypothetical-protein	gnl\|CDD\|372611	pfam13462, Thioredoxin_4, Thioredoxin.	2.4561e-16
CP028130.1\|AZZ55933.1\|1867986_1869117_-\|FUSC-family-protein	gnl\|CDD\|226614	COG4129, COG4129, Predicted membrane protein [Function unknown].	1.13735e-11
CP028130.1\|AZZ55923.1\|1858720_1859905_-\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|236492	PRK09382, ispDF, bifunctional 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase/2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase protein; Provisional.	3.34236e-106
CP028130.1\|AZZ55935.1\|1870254_1870860_-\|FABP-family-protein	gnl\|CDD\|378046	pfam08768, DUF1794, Domain of unknown function (DUF1794). This domain forms a beta barrel structure but the function is unknown. The GO annotation for this protein indicates that the protein has a function in nematode larval development and has a positive regulation on growth rate.	2.00899e-51
CP028130.1\|AZZ55920.1\|1854832_1856149_+\|DUF4032-domain-containing-protein	gnl\|CDD\|379077	pfam13224, DUF4032, Domain of unknown function (DUF4032). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, and is approximately 170 amino acids in length. The family is found in association with pfam06293.	8.91929e-94
CP028130.1\|AZZ55928.1\|1863412_1864054_+\|phosphate-transport-system-regulatory-protein-PhoU	gnl\|CDD\|273990	TIGR02135, Uncharacterized_protein, phosphate transport system regulatory protein PhoU. This model describes PhoU, a regulatory protein of unknown mechanism for high-affinity phosphate ABC transporter systems. The protein consists of two copies of the domain described by pfam01895. Deletion of PhoU activates constitutive expression of the phosphate ABC transporter and allows phosphate transport, but causes a growth defect and so likely has some second function. [Regulatory functions, Other, Transport and binding proteins, Anions].	2.71198e-47
CP028130.1\|AZZ55934.1\|1869125_1870343_-\|folate-binding-protein	gnl\|CDD\|223431	COG0354, COG0354, Predicted aminomethyltransferase related to GcvT [General function prediction only].	3.24101e-49
CP028130.1\|AZZ55921.1\|1856205_1857225_-\|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB	gnl\|CDD\|223640	COG0566, SpoU, rRNA methylases [Translation, ribosomal structure and biogenesis].	3.84827e-70
CP028130.1\|AZZ55931.1\|1866372_1867125_-\|phosphoglyceromutase	gnl\|CDD\|184519	PRK14120, gpmA, phosphoglyceromutase; Provisional.	6.36766e-168
CP028130.1\|AZZ55927.1\|1862023_1863193_-\|two-component-sensor-histidine-kinase	gnl\|CDD\|274368	TIGR02966, Phosphate_regulon_sensor_protein_PhoR, phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154). [Signal transduction, Two-component systems].	4.41012e-72
CP028130.1\|AZZ55919.1\|1853643_1854720_+\|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC	gnl\|CDD\|236947	PRK11650, ugpC, sn-glycerol-3-phosphate ABC transporter ATP-binding protein UgpC.	0
CP028130.1\|AZZ55924.1\|1859910_1860393_-\|CarD-family-transcriptional-regulator	gnl\|CDD\|224248	COG1329, COG1329, Transcriptional regulators, similar to M. xanthus CarD [Transcription].	1.66652e-56
CP028130.1\|AZZ55922.1\|1857214_1858663_-\|cysteine--tRNA-ligase	gnl\|CDD\|234705	PRK00260, cysS, cysteinyl-tRNA synthetase; Validated.	0
CP028130.1\|AZZ55929.1\|1864538_1865117_+\|N-acetyltransferase	gnl\|CDD\|379112	pfam13302, Acetyltransf_3, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.42733e-26

>CP028130.1|AZZ55925.1|1860424_1861117_+|DNA-modification-methylase
MRTKQEEGRPGGAATLATLAWYRLVHSDSALSGASRADDLEDPVKARIAASVVLAVGVALATAGCNLVAPQATRKIYDPSDGVGATIGDLAIRNAMIISDDGELGTLVVTFVNSTDESLSVEVQYEGAAGRTNDTVDAVPGRTEVRPDSTEAVQMDGIDTIPGGLLPVYFQYGSEEGKELLVPVLTNALEAYSTLTPAPSATPTRTPTPNPALTALPTPTSDPGVDAPTE
>CP028130.1|AZZ55924.1|1859910_1860393_-|CarD-family-transcriptional-regulator
MQFEVGETVVYPHHGAATIAEVKTRTIKGQEKTYLKLRVAQGDLVIEVPADNVDLVGVRDVIGREGVERVFEVLRAEVVEEPTNWSRRYKANLEKLGSGDVVRVSEVVRDLTRRDRDRGLSAGEKSMLAKARQILVSELALAEKTDEDAASLLLDEVLAS
>CP028130.1|AZZ55923.1|1858720_1859905_-|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MTTPPTVAVVLVAAGSGTRLGRERPKAYVECAGTTILERSLRTVLMLAEPVQIVIVAPTTLIDETIALARTAGAADGTVNVVAGGATRQESVARGLVTLAPSIDVVLVHDAARALTPLRQFERVIAAVRASGGGVIPGLPVTDTIKRIDADSVILGTVDRSQLAAVQTPQGFPRDLLDEAYADTEEEFTDDAALLASQGGACVVIDGDPLAFKITTPWDLARAEQILAPAHAVIVPRVGIGTDVHAFDDDSPLWLAGLHWPGEGGLSGHSDGDPVAHAICDALLAAAGLGDIGSRFGTADPRFENAHGEVFLRATRELVEAAGFTIGNVAVQLIGNRPTFSPRREEAQRLLSRLLGAPVSVAATTSDALGFTGRGEGVAATATALVLPSPASAR
>CP028130.1|AZZ55922.1|1857214_1858663_-|cysteine--tRNA-ligase
MTLRLHDSKAQALVDFVPLRENEVGMYVCGPTVQSSPHIGHLRSALAYDQLRRWLTYRGYQVTLVRNVTDIDDKILALTEESRRRAPEGAPSEQWWALAYRVELEFTAAYTALGILPPTYEPRATASIAEMIALIQTLIERGHAYPASDPSGDVYFDTRSWLDYGALTRQRLESMEAATDADPRGKRDPHDFALWKGAKPDEPESASWPSPWGPGRPGWHIECSAMSTKYLGTQFDIHGGGLDLRFPHHENELAQSSAAGHAFASYWLHNGLVSVTGQKMSKSLGNSVFASELLGSARPLVVRYYLGSAHYRSTLEFHDGALEEADAALERIEGFLDRSRRRLEGTRFAALGEPVVPQEFADAMDDDLSVPQAIGVLHETVRAGNAALDAEDLSTVSALRTQVLAMAGVLGIDPEAPEWARSGDEPSYRALSVLVDRLVAERQTAREQRDWASADRIRTDLAAAGITIEDTQTGAHWSLDGE
>CP028130.1|AZZ55921.1|1856205_1857225_-|23S-rRNA-(guanosine(2251)-2'-O)-methyltransferase-RlmB
MANKPGRPGAVRKKSKGKAVGSGGQGRQALEGKKPTPKAEDRPYHPAGKAKLARDRFVAAGGKGRPGGALSAAARGQGRPASSRKPKSGDEFEMVTGRNSVLEALRASIPATTLYLATRIEMDDRVKEALKIATARGLPVLEVMRPELDRLAGIDSVHQGLVLKVPPYEYAHPSDLLERSVSRGAVPLLVALDGITDPRNLGAIIRSVAAFGGQGVIVPQRRSVGLTSAAWKTSAGAAARIPVAMASNLTAMIKDFKREGVFVIGLDGDGDVALPGLELADRPLLVVVGSEGKGLSRLVAEQCDAVVSIPISSATESLNAGIAASVALYEISKLRASSE
>CP028130.1|AZZ55920.1|1854832_1856149_+|DUF4032-domain-containing-protein
MSGSLNITSATVDPALLDLPWNLRLDDWPDEYIAALPKGISRHTVRFAHLSGHVVAVKETTAEMSRREYEMLKTLQRLDVPCVEPGAVIINRTDDEGEALPAVLVTRHLKFSLPYRALFSQTLRPDTATRLVDALALLLVRLHVIGFFWGDVSLSNTLFRRDAGAFAAYLVDAETGQLYSGGLSNGQRENDLEIARVNIAGELLDLEAGGRIDDDLDPITVSDGIVAAYRSLWKELTGAESFSTSERWRINDRVNRLNNLGFDIEELAIKTDDAGSTVRIQPKVVDAGHHQRRLLRLTGLDAQENQARRLLNDLDSYTVTYDKQNLDEEMVAHEWLAQVFEPVIRSIPRELKGRLEPAEMFHQLLEHRWFMSQQQARDVPLAEAVTAYVNDILRYRRDEATVIASATEALTLPNLVIDESGDAELTDEDADVDWTKNI
>CP028130.1|AZZ55919.1|1853643_1854720_+|sn-glycerol-3-phosphate-ABC-transporter-ATP-binding-protein-UgpC
MASVTFDHASRVYPGATRASVDKLNLEVGDGEFLVLVGPSGCGKSTSLRMLAGLEEVNEGRILIGDRNVTDVPPKDRDIAMVFQNYALYPHMSVAENMGFALKIAGVNKDERAARVLEAAKMLDLEPYLNRKPKALSGGQRQRVAMGRAIVRKPQVFLMDEPLSNLDAKLRVSTRTQIGTLQRRLGITTVYVTHDQTEALTMGDRIAVLKDGVLQQVGTPRDLYENPNNVFVAGFIGSPAMNLFHADVTDGGVNFGDTVLPIAREALAKASQKVVTLGVRPEDVTVSTQPGGLPIEVDLIEELGSDGYLYGHTEVEGRRTDIVARVDGRVHPTAGDRVYVTANHRVHIFDAESGERLS
>CP028130.1|AZZ55918.1|1852464_1853403_-|hypothetical-protein
MTNDGAHDRLSKNQRREAAREKARRLREQQKRRDRVSRIALQGGLAVVVIAIVAIVVFAVSSSIRPAGPGPANMASDGVVIGENMVAQTSPSLPAEGTPTPSVLDTSSGTVDIRVYLDYLCPYCGEFEKTNGNQIKEWVTSGAATVEIHPIAILTTRSNGTKYSERAANAAACVADTQPNAFFDYNSLLFKNQPAEGTNGLSDDQLKNYAAQAGVEDTAAVNSCIDDSRFVSWVRAATERATSGPLPGTDVPAATGTPIVLVNGGSYSGSLTDPDAFSSFVLSAAAQSYSSGTPAPTSSPAPASTEPAPAAG
>CP028130.1|AZZ55917.1|1852003_1852237_+|hypothetical-protein
MSHSWTPMSMVTRSVWPVEWRVTDRTEDLKWIRLIHYQGRPTFVYVTKDGWVVAGRDRLRDVAGAFPAWKCAVTSRN
>CP028130.1|AZZ55916.1|1851747_1851945_-|hypothetical-protein
MDAQINVQVLEEEVDGTTMYRVVDLTRPSLMWQDVFAAGPHADRSVADAERSRWEVYLRRGFRRL
>CP028130.1|AZZ55927.1|1862023_1863193_-|two-component-sensor-histidine-kinase
MDSGLIVVLSLVLGVAIGILLTTVVTLAARQGRIAAEVVSVSVPEGIDAIIDAVGAPAFVTDPSHNVLKASSRAVALGLVTQDTILHPDLVAIVDRVRRFGDDIEQDLELPTSPLSDAAVTLVVRATRLGSRFVLVIAEDHTEARRLEAVRRDFVANISHELKTPIGAVGLLAEALDSAADDPQQVRRFAHRLTQESHRLAKITREIIELSRLQATDVARSSDIIRVDDIVTSALETTHVMAESHDVSLVKGGMKRAYVVGQEKILVSALHNLLANAIQYSPAGSRVGIGVRSTGGVVEIAVTDQGIGIPEEDLDRVFERFYRVDQARSRHTGGTGLGLSIVKHAVQNHGGDVRVWSKPGRGSTFTIRLPEADPARTPFAATAPIGEHA
>CP028130.1|AZZ55928.1|1863412_1864054_+|phosphate-transport-system-regulatory-protein-PhoU
MREVFQQELAEVQERLVEISGLVEIAIEKATQAFNHSDVTLAEEVIANDAHIDELAISLDELAIDILARQNPVARDLRIVVSALRISASLERMGDIAEHIAQLSRYRFPDKVVPKSLRPTFVEMGRLDVVVAHKLTELLRSQDPRIAEEIRDEDDKIDELHVSVFDKVLSEAWKGQAADTVDATLASRYHERFADHAVSIAKKVQYLISGDWG
>CP028130.1|AZZ55929.1|1864538_1865117_+|N-acetyltransferase
MEQMVPLILATRRLNITRFSHGDLDDRLAYQSREDVARYLYREPLSREACAASIERAIATTSLIAEGDALLLAIRVHTERRVIGEIVLTLSDRRAAQVEIGWVFNPEDAGRGYATEAARAVAELAFSEYGAHRLFARLDAENERSVLLCRRLGFRQEAHLVENDRRVSGAWGSEFIYAALQEDLIRDDAQWR
>CP028130.1|AZZ55930.1|1865107_1865773_+|hypothetical-protein
MAITYEASAADVARVRLTPSPIGEAVFSLRALARPGAASQFGPFLEYARGRLRGVDIRVLRSLVPSTGYVPDVLTPSPRFAPSFLTQLEEVRATPAEEFAAQVDWMARDPGTTRQWKARTATARAFLQATDLPETIAPPAGIAAAQKSGEPANQIKQVLSGGKIATQSPGLAQLPMYSEIHKQLVQSNTKIQLGLPRHFSPKTQMLFTPTGHRELVSGREK
>CP028130.1|AZZ55931.1|1866372_1867125_-|phosphoglyceromutase
MSETSTLILVRHGNSEWNQKNLFTGWVDVRLTEQGVAEATRAGELLIEAGLHPDIVYTSRQTRAIQTANIALEAADRLWIDVKRSWRLNERHYGALQGKDKAQTLAEYGPEQFQTWRRSFDVPPPPMSDDDQYSQAHDERYADLGDALPRTESLKLVIERMLPYWESDIKPDLASGKTVMVTAHGNSLRALVKTLDGISDSDIAELNIPTGIPLVYSLDENFAPIGQARYLDPEAAAAGAAAVAAQGAKK
>CP028130.1|AZZ55932.1|1867173_1867983_+|class-I-SAM-dependent-methyltransferase
MPIGTITRGTTGTNRLRRVDRRLAELPVLRSARSPLVVDLGFGASAVTTLELHRRLLRAAPDVEVLGLEIEPARVATARRQLEQVREGGTSFPADARVRFERGGFEVPLPTQRRAEVIRAFNVLRQYDEGDVAGAWTTMTTRLQPDGVLVEGTCDEIGRICTWIEVGREGPRSLTLSLRLASIPSPMTAAERLPKALIHRNVPGERVHAFLAALERAWTLNAPLAVYGPGQRWLATVRDLRVEWPILDGPRRWRLGEVTVAWNAVAPAA
>CP028130.1|AZZ55933.1|1867986_1869117_-|FUSC-family-protein
MVAAGPATRGRAVERVHGLVEAWELHPRKAIGRAAASLPAVLQIVLAAVLAYSVARFVVGHPAPVLALTVTITSLGIARDTRPKQVAETAIGMLIGITASEILLLLWGSGVWQLAVVLAIVFTLGRALSPSPGFAVAAGTQAMLVMILPAPDGGVLTRSLDGLIGGLAALLCTAVVPRPSLHTARAEAHRLVSALGRTVEELTEALQRGDSSASSSALERIRATQPMIDGWTAALDSATGVARISPFIRRHRVELTRQSTMLAALDLATRNLRIIARRIDFLVGDAAARPTLAGVVASFGPSIALLGRAVADPSVLALARQDLVLLATSLDPQRLIPEARLAEKTLLVLLRPLVVDLLTATGAGPAEARAALPPLS
>CP028130.1|AZZ55934.1|1869125_1870343_-|folate-binding-protein
MTTYFGHGILPPSARGSAPTRQDGSPVSTDVLSPLLSAAGAVAGTSAAEPGVAAHYGEPFREQRALAAGTALVDLSGRGVVTVTGPDRLTWLDSLTSQAVSRLSPGSCAETLLLDPSGRIEHVIRLVDDGETTWLLLDRDETAGLAAWLDRMRFLLRVEVSERTEEFATLAVFGEGAALAFVLGLGEASIAWRDPWAQVQPGGWQYALIAEHPAASWNLCEILVPRAVLDGLDGRAAAAGVTLAGADALEALRIAAWRPRHATEVDERSLPHELDLLRSSVHLAKGCYRGQETVAKVHNLGHPPRRLVLLQLDGSDSVLPRHGDIVTAHKGGELVEVGTVTSSAWHYEDGPIALAVIKRTVPIELELTVIVGDARVAAAQEVVVPPEAGAEADVPRLPRLGSTTR
>CP028130.1|AZZ55935.1|1870254_1870860_-|FABP-family-protein
MISLPSGLPPELVPLSWLLGVWEGSGVIDYAVGDEPVQAEFGHRISFSYDGLPYLNYNSYTWLLDDSEHDHRPLVSEMGYWRLSRALTDADAGPAMLPGRGAPAFPDAESVETLRNAAGAFDIEVSLVHPDGVSELYLGQVKGPRIDLATDAVMRTAAAKDYAAATRLYGLVDDHLLWAWDIAALGQGLRTHSSGRLARVD
>CP028130.1|AZZ55936.1|1871041_1871302_-|hypothetical-protein
MSRDRLGIGVVWALALVGSVVTLAVAAPASRQLWLALTFGGCVLATFAVQLAVARADGYLVRAMTSIVGAMVLVAIASGIALLLPA

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

716809 : 798496

Tupanvirus(27.27%)

transposase,integrase,tRNA

attL 717063:717079|attR 793630:793646

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZZ55042.1\|716809_717073_+\|transposase	transposase	NA	NA	NA	NA
717063:717079	attL	NA	NA	NA	NA
AZZ55043.1\|717176_718019_-\|transposase	ISAs1 family transposase	NA	NA	NA	NA
AZZ55044.1\|718634_719873_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
AZZ57297.1\|719986_721150_+	ATP-grasp domain-containing protein	NA	NA	NA	NA
AZZ55045.1\|721113_724617_+	hypothetical protein	A0A2K9KZV5	Tupanvirus	4.6e-34	26.1
AZZ55046.1\|724583_726491_+	ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	5.6e-10	26.3
AZZ55047.1\|726468_728298_+	ABC transporter ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	6.0e-09	23.4
AZZ55048.1\|728290_735964_+	LLM class flavin-dependent oxidoreductase	D0R7J2	Paenibacillus_phage	6.2e-23	31.5
AZZ55049.1\|735967_739963_+	KR domain-containing protein	NA	NA	NA	NA
AZZ55050.1\|739959_744453_+	KR domain-containing protein	D0R7J2	Paenibacillus_phage	1.6e-50	38.3
AZZ55051.1\|745321_746089_-	4'-phosphopantetheinyl transferase	NA	NA	NA	NA
AZZ55052.1\|746879_747518_+	XRE family transcriptional regulator	NA	NA	NA	NA
AZZ55053.1\|747521_747890_+	hypothetical protein	NA	NA	NA	NA
AZZ55054.1\|747981_748788_+	hypothetical protein	NA	NA	NA	NA
AZZ55055.1\|748905_749130_+	hypothetical protein	NA	NA	NA	NA
AZZ55056.1\|749317_749587_+	DNA-binding protein	NA	NA	NA	NA
AZZ55057.1\|749623_750802_+\|integrase	site-specific integrase	A0A0E3XBN7	Gordonia_phage	1.7e-52	36.8
AZZ55058.1\|751904_752777_+	dihydropteroate synthase	NA	NA	NA	NA
AZZ55059.1\|752773_753517_+	pyrimidine reductase family protein	NA	NA	NA	NA
AZZ57298.1\|753537_754980_-	amino acid permease	NA	NA	NA	NA
AZZ55060.1\|755238_756333_-	YihY/virulence factor BrkB family protein	NA	NA	NA	NA
AZZ55061.1\|756349_757552_-	MFS transporter	NA	NA	NA	NA
AZZ55062.1\|757548_757989_-	DUF2510 domain-containing protein	NA	NA	NA	NA
AZZ55063.1\|758066_760610_+\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	5.6e-106	36.2
AZZ55064.1\|760612_761167_+	HIT domain-containing protein	NA	NA	NA	NA
AZZ55065.1\|761190_762108_+	pyridoxal 5'-phosphate synthase lyase subunit PdxS	NA	NA	NA	NA
AZZ55066.1\|761998_762760_+	pyridoxal 5'-phosphate synthase glutaminase subunit PdxT	NA	NA	NA	NA
AZZ55067.1\|764040_764802_+	YebC/PmpR family DNA-binding transcriptional regulator	NA	NA	NA	NA
AZZ55068.1\|764838_765420_+	crossover junction endodeoxyribonuclease RuvC	NA	NA	NA	NA
AZZ55069.1\|765416_766022_+	Holliday junction branch migration protein RuvA	NA	NA	NA	NA
AZZ55070.1\|766018_767056_+	Holliday junction branch migration DNA helicase RuvB	NA	NA	NA	NA
AZZ55071.1\|767045_767549_+	preprotein translocase subunit YajC	NA	NA	NA	NA
AZZ55072.1\|767651_769376_+	protein translocase subunit SecD	NA	NA	NA	NA
AZZ55073.1\|769375_770386_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.8e-21	30.8
AZZ55074.1\|770389_770731_+	rhodanese-like domain-containing protein	NA	NA	NA	NA
AZZ55075.1\|770810_773063_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	4.9e-13	39.4
AZZ55076.1\|773041_773605_-	SAM-dependent methyltransferase	NA	NA	NA	NA
AZZ57299.1\|773681_774905_-	DUF349 domain-containing protein	NA	NA	NA	NA
AZZ55077.1\|775091_775898_-	peptidylprolyl isomerase	NA	NA	NA	NA
AZZ55078.1\|776038_777457_+	replication-associated recombination protein A	G3MBE0	Bacillus_virus	1.2e-86	43.5
AZZ55079.1\|777687_778317_+	30S ribosomal protein S4	NA	NA	NA	NA
AZZ55080.1\|778580_779792_-\|transposase	IS110 family transposase	NA	NA	NA	NA
AZZ55081.1\|780130_780547_+	DUF948 domain-containing protein	NA	NA	NA	NA
AZZ55082.1\|780614_780806_+	hypothetical protein	NA	NA	NA	NA
AZZ55083.1\|780858_783516_+\|tRNA	alanine--tRNA ligase	A0A2K9L3D8	Tupanvirus	3.0e-54	33.3
AZZ57300.1\|783519_784095_+	Holliday junction resolvase RuvX	NA	NA	NA	NA
AZZ55084.1\|783928_785299_+	endolytic transglycosylase MltG	NA	NA	NA	NA
AZZ55085.1\|785295_786150_+	shikimate dehydrogenase	NA	NA	NA	NA
AZZ55086.1\|786172_787390_+	chorismate synthase	NA	NA	NA	NA
AZZ55087.1\|787415_787994_+	shikimate kinase	NA	NA	NA	NA
AZZ55088.1\|787990_789070_+	3-dehydroquinate synthase	NA	NA	NA	NA
AZZ57301.1\|789199_790924_-	glycoside hydrolase 68 family protein	NA	NA	NA	NA
AZZ55089.1\|792732_793497_+\|transposase	transposase	NA	NA	NA	NA
AZZ55090.1\|794368_796579_-	hypothetical protein	NA	NA	NA	NA
793630:793646	attR	NA	NA	NA	NA
AZZ55091.1\|796915_797206_-	WXG100 family type VII secretion target	NA	NA	NA	NA
AZZ55092.1\|797731_798496_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1842946 : 1849370

Lactococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZZ55906.1\|1842946_1843327_-	cold shock domain-containing protein	Q9AZD3	Lactococcus_phage	1.3e-06	40.3
AZZ57410.1\|1843447_1843642_+	hypothetical protein	NA	NA	NA	NA
AZZ55907.1\|1843731_1844421_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.0e-38	38.2
AZZ55908.1\|1844493_1846149_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	7.8e-16	24.4
AZZ55909.1\|1846331_1847954_-	chaperonin GroEL	A0A240F779	uncultured_virus	2.6e-149	54.9
AZZ55910.1\|1848133_1848337_-	cold-shock protein	Q9AZD3	Lactococcus_phage	9.8e-14	57.8
AZZ55911.1\|1848507_1849044_-	hypothetical protein	NA	NA	NA	NA
AZZ55912.1\|1849088_1849370_-	DUF3263 domain-containing protein	A0A1B3AZ99	Gordonia_phage	1.0e-05	38.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP028130

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CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection