CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP027114	Gordonia alkanivorans strain YC-RL2 chromosome, complete genome	5 crisprs	csa3,WYL,DEDDh,cas4,DinG,cas3	1	1	2	0
CP027115	Gordonia alkanivorans strain YC-RL2 plasmid pYYC01, complete sequence	0 crisprs	csa3	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP027114_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027114_1

319947-320106

Orphan

Consensus_repeat	Method
TCGACAGTCTCGGCGAGCCTCGACTGGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP027114_1

>merge|CP027114|1|319947-320106|CRISPRCasFinder
GCGAGCGCCTCGTCGATCCTCGCCTGGGCGTCGTCCCGGGAACCCGTGATCTTCGCCTGCGTCGAGCCGACGGTCTCGACCAACTTCGACTGGGTGGTCTCGACAGTCTCGGCGAGCCTCGACTGGGTGGTTTCGACGGTCTCGGCGAGCTTGGACTGAG

>CP027114|1|1|319947-320106|CRISPRCasFinder
GCGAGCGCCTCGTCGATCCTCGCCTGGG	CGTCGTCCCGGGAACCCGTGATCTTCGCCTGCGTCGAG
CCGACGGTCTCGACCAACTTCGACTGGG	TGGTCTCGACAGTCTCGGCGAGCCTCGACTGGGTGGTT
TCGACGGTCTCGGCGAGCTTGGACTGAG

Protein	Signature genes	Signature genes Name	Protein_function
CP027114.1\|AZZ79915.1\|312819_313695_-\|hydrolase	unknown	unknown	gnl\|CDD\|143605
CP027114.1\|AZZ79920.1\|318716_319040_-\|DUF2516-domain-containing-protein	unknown	unknown	gnl\|CDD\|378483
CP027114.1\|AZZ83481.1\|326050_326833_-\|heparin-binding-hemagglutinin	unknown	unknown	gnl\|CDD\|237855
CP027114.1\|AZZ83480.1\|324928_325882_+\|hypothetical-protein	unknown	unknown	unknown
CP027114.1\|AZZ79919.1\|317882_318710_-\|MerR-family-DNA-binding-transcriptional-regulator	unknown	unknown	gnl\|CDD\|133405
CP027114.1\|AZZ79924.1\|323072_323900_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187664
CP027114.1\|AZZ79923.1\|322272_323076_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP027114.1\|AZZ79921.1\|320244_320778_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP027114.1\|AZZ79926.1\|327085_327973_-\|3-hydroxybutyryl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|181133
CP027114.1\|AZZ79916.1\|314519_315029_-\|DUF2505-domain-containing-protein	unknown	unknown	gnl\|CDD\|378476
CP027114.1\|AZZ79918.1\|315584_316706_+\|UDP-N-acetylmuramate-dehydrogenase	unknown	unknown	gnl\|CDD\|237552
CP027114.1\|AZZ83479.1\|316727_317822_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP027114.1\|AZZ79925.1\|323896_324748_+\|polyphosphate-kinase-2-family-protein	unknown	unknown	gnl\|CDD\|274737
CP027114.1\|AZZ79913.1\|310973_311603_+\|hypothetical-protein	unknown	unknown	unknown
CP027114.1\|AZZ83482.1\|329903_330647_-\|hypothetical-protein	unknown	unknown	unknown
CP027114.1\|AZZ79917.1\|315039_315546_-\|DUF2505-domain-containing-protein	unknown	unknown	gnl\|CDD\|378476
CP027114.1\|AZZ83478.1\|313719_314463_-\|SAM-dependent-methyltransferase	unknown	unknown	unknown
CP027114.1\|AZZ79922.1\|320893_322234_-\|DUF445-domain-containing-protein	unknown	unknown	gnl\|CDD\|225347
CP027114.1\|AZZ79927.1\|328136_329432_-\|isocitrate-lyase	unknown	unknown	gnl\|CDD\|237893
CP027114.1\|AZZ79914.1\|311641_312823_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP027114.1\|AZZ79915.1\|312819_313695_-\|hydrolase	gnl\|CDD\|143605	cd07581, nitrilase_3, Uncharacterized subgroup of the nitrilase superfamily (putative class 13 nitrilases). The nitrilase superfamily is comprised of nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes, which depend on a Glu-Lys-Cys catalytic triad. This superfamily has been classified in the literature based on global and structure based sequence analysis into thirteen different enzyme classes (referred to as 1-13). Class 13 represents proteins that at the time were difficult to place in a distinct similarity group; this subgroup represents either a new class or one that was included previously in class 13. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer.	4.09265e-118
CP027114.1\|AZZ79920.1\|318716_319040_-\|DUF2516-domain-containing-protein	gnl\|CDD\|378483	pfam10724, DUF2516, Protein of unknown function (DUF2516). This family is conserved in Actinobacteria. The function is not known.	2.53867e-24
CP027114.1\|AZZ79919.1\|317882_318710_-\|MerR-family-DNA-binding-transcriptional-regulator	gnl\|CDD\|133405	cd04778, HTH_MerR-like_sg2, Helix-Turn-Helix DNA binding domain of putative transcription regulators from the MerR superfamily. Putative helix-turn-helix (HTH) MerR-like transcription regulators (subgroup 2). Based on sequence similarity, these proteins are predicted to function as transcription regulators that mediate responses to stress in eubacteria. They belong to the MerR superfamily of transcription regulators that promote transcription of various stress regulons by reconfiguring the operator sequence located between the -35 and -10 promoter elements. A typical MerR regulator is comprised of two distinct domains that harbor the regulatory (effector-binding) site and the active (DNA-binding) site. Their N-terminal domains are homologous and contain a DNA-binding winged HTH motif, while the C-terminal domains are often dissimilar and bind specific coactivator molecules such as metal ions, drugs, and organic substrates.	2.47067e-60
CP027114.1\|AZZ79924.1\|323072_323900_+\|short-chain-dehydrogenase	gnl\|CDD\|187664	cd09763, DHRS1-like_SDR_c, human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs. This subgroup includes human DHRS1 and related proteins. These are members of the classical SDR family, with a canonical Gly-rich NAD-binding motif and the typical YXXXK active site motif. However, the rest of the catalytic tetrad is not strongly conserved. DHRS1 mRNA has been detected in many tissues, liver, heart, skeletal muscle, kidney and pancreas; a longer transcript is predominantly expressed in the liver , a shorter one in the heart. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	3.6204e-86
CP027114.1\|AZZ79923.1\|322272_323076_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.75432e-08
CP027114.1\|AZZ79921.1\|320244_320778_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	1.71336e-12
CP027114.1\|AZZ79926.1\|327085_327973_-\|3-hydroxybutyryl-CoA-dehydrogenase	gnl\|CDD\|181133	PRK07819, PRK07819, 3-hydroxybutyryl-CoA dehydrogenase; Validated.	0
CP027114.1\|AZZ79916.1\|314519_315029_-\|DUF2505-domain-containing-protein	gnl\|CDD\|378476	pfam10698, DUF2505, Protein of unknown function (DUF2505). Members of this family are all Actinobacteria. The function is not known.	1.36536e-54
CP027114.1\|AZZ79918.1\|315584_316706_+\|UDP-N-acetylmuramate-dehydrogenase	gnl\|CDD\|237552	PRK13903, murB, UDP-N-acetylmuramate dehydrogenase.	7.75533e-178
CP027114.1\|AZZ83479.1\|316727_317822_-\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.42421e-28
CP027114.1\|AZZ79925.1\|323896_324748_+\|polyphosphate-kinase-2-family-protein	gnl\|CDD\|274737	TIGR03709, PPK2_rel_1, polyphosphate:nucleotide phosphotransferase, PPK2 family. Members of this protein family belong to the polyphosphate kinase 2 (PPK2) family, which is not related in sequence to PPK1. While PPK1 tends to act in the biosynthesis of polyphosphate, or poly(P), members of the PPK2 family tend to use the terminal phosphate of poly(P) to regenerate ATP or GTP from the corresponding nucleoside diphosphate, or ADP from AMP as is the case with polyphosphate:AMP phosphotransferase (PAP). Members of this protein family most likely transfer the terminal phosphate between poly(P) and some nucleotide, but it is not clear which. [Central intermediary metabolism, Phosphorus compounds].	1.90525e-143
CP027114.1\|AZZ79917.1\|315039_315546_-\|DUF2505-domain-containing-protein	gnl\|CDD\|378476	pfam10698, DUF2505, Protein of unknown function (DUF2505). Members of this family are all Actinobacteria. The function is not known.	6.90545e-38
CP027114.1\|AZZ83481.1\|326050_326833_-\|heparin-binding-hemagglutinin	gnl\|CDD\|237855	PRK14900, valS, valyl-tRNA synthetase; Provisional.	1.40893e-06
CP027114.1\|AZZ79927.1\|328136_329432_-\|isocitrate-lyase	gnl\|CDD\|237893	PRK15063, PRK15063, isocitrate lyase; Provisional.	0
CP027114.1\|AZZ79922.1\|320893_322234_-\|DUF445-domain-containing-protein	gnl\|CDD\|225347	COG2733, COG2733, Predicted membrane protein [Function unknown].	2.55448e-135

>CP027114.1|AZZ79920.1|318716_319040_-|DUF2516-domain-containing-protein
MFGVDVFSVLAYGQSLIMLVLTVVAGIAAVVALIHAAIQRPDAFPAVDRQSKVIWVAILAAASLFIWFFGAVSFLGIIGVVAMLVYLVDVRKRVDDIQGKSWFSKKA
>CP027114.1|AZZ79919.1|317882_318710_-|MerR-family-DNA-binding-transcriptional-regulator
MAEYRINDLAEASGVSVRNIRVYQDRGLLPPPTIRGRAGWYSDQHLVRLNLISRMLERGYTFATISELLHAAHHGMRVEQILRGSPKGGRFRNFKRAATITIAELKKTLNASDRSIALSQKLGLLAKDGTHYAIRNPELLEGAEVLVKAGVDLEFLLDRWVRVQDDLEDVASSFVSIITDKYFDENLPDLGEAGVSEMADLIQTVRPMAHEIVETTFRRALDEQISQAIGRAATYFDATTGDDEPDSTTPNSSGDQPDPGYETTDIGTLNTDTGR
>CP027114.1|AZZ83479.1|316727_317822_-|alpha/beta-hydrolase
MNKRSLVNVGGIATVIGAGVVGVGVGTVLAGIARSALRAELAVDDGPDDLLTAPDSAPHRLPVRSSDGTVLNVEIYGSDDAADDDGDVIVMVHGWTCNTAYWYPQINHLASSEGGRRRVVVYDQRGHGLSERGLRRPTIAMLGQDLDAVLEAAVPAGRRAILVGHSMGGMTIMSWAGQYPEKVGSRVSAVVLVSTAAKGVLENHTLVPVDLPAYARPFAPVVAKAFTSMPVPIPKTPYGVRISHYIALGPHARKAHVNFVDEMIGACPPRARAGWGSAMGKLDVTPGLAALSVPTTVVVGTEDRLTPRTHAEQMAEVLRRNGSLRDLVVYQGVGHMASIEAAERFNEMLDDLVAEVSRAEQRVS
>CP027114.1|AZZ79918.1|315584_316706_+|UDP-N-acetylmuramate-dehydrogenase
MTDTQTPLSAPLAELTTLRLGGPAREIVRCPDTRSIVETIQELDERSEPVLVIGGGSNLVIGDAGFDGTAVVLASSRIEFGSGRESGRPHVVADAGVGWDDLVAATVEAGFGGLECLSGIPGAAGATPVQNVGAYGVEVADILRSVQVLDRRSGTLRWVSPAELGLGYRTSNLKHRNDFVVVAVSFWLNDDRASQPIRYRELATTVGVEPGDRVDAVTAREAVLGLRRGKGMVLDPDDFDTWSAGSFFTNPIVDGEDAPAVLERIAARVGDDVAIPSYPAGPQPNTGDSPNADAPTAIKLSAGWLIERAGFGRGYPSADAPVCLSTKHTLALTNRGAATTDQLLTLAREVRDGVLDTFGVTLRPEPVFVNCVL
>CP027114.1|AZZ79917.1|315039_315546_-|DUF2505-domain-containing-protein
MASKLQHSVSYPFSTERLWALYTTEQYWHDLVERMNSGHGHVEKVNIAGDTVSVEMSQGIPSEKLPSAVTKIMPGDLRIPRKNTFRLVGDRIEGEIHATVEGAPVPVNVYGTITTAGDPATSDCSAEVSVNLPMFGGKIEKAVVSELVGLLDHECGHTVDWESGNPLT
>CP027114.1|AZZ79916.1|314519_315029_-|DUF2505-domain-containing-protein
MARRLSYSARYTHPAEKLYQAHSIKQYWDDMMAGFQMISPHCEVASFTSDENGVKVVLRQTIGRDQLPPLAQTVMMKDMVITREETLGPFDPDHTKGTYNASIPAGPGSLNGWQELFPTDDGCTIRRTSEAKVFVPFVNGKLEQMILINLVDLFRAEAEYAKDWIDKNL
>CP027114.1|AZZ83478.1|313719_314463_-|SAM-dependent-methyltransferase
MTRGTTNINRLRRVDRWMAHEPAVIAALDVARPLVVDLGYGARPDTTVEMAGRLRRVAPDLEMVGLEIDPARVVDPRDGVRFAVGGFEMAGLRPRVVRAFNVLRQYDETEVDAAWSRLRAALSPGGVIVEGTCDEIGRRCTWVLLDHAGPVSLTLCWAPEHSERPSDLAERLPKALIHRNVPGEKIHDLLTLADQCWDIAAPLAPYGPRVRWRHAQDLLRERGVDCVVTRRRMSDNVLTVPWEAVAP
>CP027114.1|AZZ79915.1|312819_313695_-|hydrolase
MRVAMAQISSTDDPSENLVTLRAATQDAASRGARLVVFPEATMCRFGVPLKPVAEDLDGPWARAVSEVAASAGVTVVAGMFTPSDDGRVFNTVLVAHPDGSRQGYDKLHLYDAFGFQESKTVAAGSEPLTFEVDGVTVGVATCYDIRFPALFTNLARRGAHIVVVPTSWGAGPGKIHQWKVLATARALDSTTFVVAVGQALPPDEAVAGSGAPTGIGHSQITDPFGTVVAAYPERVGVDVHDLDLALVEKARKQLAVLANERELPAGGAVSSKVAPTGERLRESDDRGRNP
>CP027114.1|AZZ79914.1|311641_312823_-|hypothetical-protein
MSDSKTPGGGPRDQGESHDPTESAGPTDHTESTGDDWRPVEDADPTRSAEPVEPSTGTDVPESGETEQFPTTPIAPGAQAYSNVPPSEADTSDLSGGPGRPGTAQFAPGETPYHDDSSAPLATPGSGPVLTSPRKSRSTKKIVALSAIAVLLLVVIGAVGSELYLRNKVTNCLEESFSGLTGVPTSVSLSRKPIILQGSGDVPYVQVDTKDGADADGVRLHMRADGISGNSSSTDIRTLNGDGFIPYERIVELSKESAPAGAGGQSTGNGASPVGSVEEISGNAADGTFEVQAAFPVMFFAVPVSATIKPVLTDGRVDFEVVKASALVFGIPPDFAQQIVDQITTSALGPFFDEVRVDQLKVTDTGLEFAISGSDVQLTNEMTGNDQQSGCSV
>CP027114.1|AZZ79913.1|310973_311603_+|hypothetical-protein
MNEHDSISNTRLLTADERAEALDLLETGLWEVPMYRWLLGPSAESDAYRWFGEVLFADHLPGLHGRFSETGDLLGLVATAEPNHATQPVDQDLTARTRHFVTTLDGFVERFTELREKSRESMLTGTVRLVFGLVHPDHRRRRVLSDLFRPIVDQTGRRGLSATLGTADPQLREFFCRRSWGGEVYGEFSLTDGPTVWLVRIGPPTNDQH
>CP027114.1|AZZ79921.1|320244_320778_-|XRE-family-transcriptional-regulator
MKRDKDEASVDAVVNGEAESVDSADHASDDGDGTTAMAVEAVEAVATAAQDAVANAAQDIGAFIRSQRVAAKVSLRQLSERAGVSNPYLSQIERGLRKPSADVLAQIAKGLRVSAEVLYVRAGILEERPASPVRDALIADDSINERQKQMLLEIYESFRKENAISSTGSEKDEFREN
>CP027114.1|AZZ79922.1|320893_322234_-|DUF445-domain-containing-protein
MASRVIEGVAGQPEGKPDAPSAPGFGGDSAGDAGRRRDLRRMKAVATGFLVFAAVVYLFTRYLEHRDGADVAAWVGYVQAASEAGMVGALADWFAVTALFRHPLGIPIPHTALIRKKKDDIGDQLGGFIEENFMTPEVVVYRAQQIDLPRRLSTWVADPRNAPRISGEAARAIQLASEMLRDEDVEQLIQAALKWVAEPQWAPPTGRILEQLIAEDRLEPVFQMLCDRAHEWAIGSQDLIDRLVDRDGPQWTPKFVNTLVGDKIHRELVEFTYKVRSDPDHELRRAMHEFVEKFADDLQNDPEMIEKFEAIKMELVGRDEVTGAASTAWKTGKAVIEQMLDDPNSTLRNTLSDSIIQLATRIRDDRPLQEKMNGWVARVAHHIAANYSQEIISVITETVRGWDADDTSRKIELQVGRDLQFIRINGTVVGALAGLVIHTTSVLIFH
>CP027114.1|AZZ79923.1|322272_323076_+|TetR/AcrR-family-transcriptional-regulator
MMANRPNPAAAARAAMAAAANVTRGLEQVLTTVTETGAKPDGRKQRWEKHKLARRTELTDGVITAVRELGADVGMDEIAAHIGVSKTVLYRYFTDKSDLGVATTVRFFENTIWPRLTEALSDDVDEYTLTHTIIGVYVHAVDDEPNLYRFALASSPTSSPAPADSVRLVSQLVMSSIVMRMTERGADTTGAELWSHALVGGIQHVVDWWMTSRTLDADQVVDYLTMMVWSAVVGVAAVDGSREAFLASPPPLTEPAREAPSDATGGS
>CP027114.1|AZZ79924.1|323072_323900_+|short-chain-dehydrogenase
MSRVALVTGGSRGVGQGVARSLVDDGWTTYVTSRHGTGPEGAIALACDHTDDAAVAAVFDEIASSSGQLDLLVNNAWAAPKGFGGFSDPFWKRPVDDWDTLIGVGLRAHYVASVHAAQLMTEAGRGLITNISSFGSRGHLHSVLYGMSKTALDKMAADMAVELKGTGVSAISLWLGLIRTELLLSLGIDEFAGFSLQRAEDPEFVGRVISRLAQDPDLAAHSGHTLVTAELGARYGIVNNDGTPPDSHRGAFGGGPLFPPAIETDQAVEPRKDES
>CP027114.1|AZZ79925.1|323896_324748_+|polyphosphate-kinase-2-family-protein
MRNGWSIPAAGALRAGAVGPIASFDPGSTPGFDGDKISGAELLVKRGEELAGLQELLYANGRAGDHRSVLLVLQGMDTAGKGGIVRHVGGLLDPQGLSIKGFGKPTPEELQHDFLWRINKALPPAGRIGIFDRSHYEDVLPVRVHNLVPKSEWEKRYDLINQFESELVANGTTIIKCCLVVSKDEQKARLAERLDRPDKYWKFNPGDIDERAHWDAYLEAYQDVFDLTDKDSAPWFVIPANRKWFARLAVCELLTTALAGLDLDWPKADFDVEAEKKRLAASD
>CP027114.1|AZZ83480.1|324928_325882_+|hypothetical-protein
MAFPIDQYGLVRRAAALDAAISDNELAAAVRRRELIRLVPGVFVPASTQFVGHEGAQRLHRFKAIAVATNCDAGAQAMPLSHASAAAVHGLPLLKPDIESVHVVNGKKSGGFIQGHRHVHAAPFGDDDIVEVDGMLVTTLERTAVDVATSGTFAQSLAAFDQALRTGANAEKLAHTLADRRRRGVRTARRALRLADPLSENVAESWTRAQMIEAGLPIPRLQHEFRGRRGTYYSDFDWDERLIGEFDGMVKYGRLRKPGTTVEDAVMREKRREDDLRALGAIVVRWTWTDLEKGAVVGMLRPWLESLKLLSSRTIPA
>CP027114.1|AZZ83481.1|326050_326833_-|heparin-binding-hemagglutinin
MTTTRNYAPLYAAVGAGDYAFTQVTEKLTELRERTEAAAETAQTRLEARYTETKALIADLPETAQSRFDEAKTRIESLSEEVPTEIDELRGKLTADELKKLADPYVEKATDFYNTLAERGEATLERLRKKPVVQENLSRVEKVYNDAVDITEDALGVVSSQTRLVGERAAKLAGRVSEEVEDVAVAIEEIGGDIKEQADDAAKEIDGAAGTVEAKARTAQASPAKKVAEAKDESVPPVKKVPAKKSPAKKAPAKKATTAK
>CP027114.1|AZZ79926.1|327085_327973_-|3-hydroxybutyryl-CoA-dehydrogenase
MTSQKITRVGIVGAGQMGAGIAEVCARAQADVLVYESTRDLLSAGRARILSSLDRGVSSGKLTERERDQAADRLTFTSDLNDFADRQLVCEAVVEDEAVKTAIFTDLDKIVDDPHAVLASNTSSIAIMKLATATQSAARVIGLHFFNPVPVLPLVELITTPVTAPEVTARAETFAHDVLGKQVIRSADRSGFVVNALLVPYLLSAIRMVESGFSTVEDIDRAMMLGCAHPMGPLKLADLVGLDTVKAIADKMHEEFDEPLYAPPPLLVQMVTSGRLGKKAGHGFYEYERVLAGKR
>CP027114.1|AZZ79927.1|328136_329432_-|isocitrate-lyase
MSNVGKPRTAAEIQQDWDTNPRWKGIKRDYTAEQVAQLQGSVVEEHTLARRGAEILWDGVTKGDGSYINALGALTGNQAVQQVRAGLKAVYLSGWQVAGDANLSGHTYPDQSLYPANSVPNVVRRINNALLRADEIARVEGDDSVDNWVVPIVADGEAGFGGALNVYELQKAMIAAGAAGTHWEDQLASEKKCGHLGGKVLIPTQQHIRTLNSARLAADVAGVPTVVIARTDAEAATLITSDVDDRDKQFVTGERTAEGYYHVKNGIEPCIERAKSYAPYADMIWMETGTPDLELARKFAEAVKAEYPDQLLSYNCSPSFNWSKHLDDSTIAKFQNELGAMGFTFQFITLAGFHSLNYGMFDLAYGYAREQMTAFVDLQNREFKAADERGFTAVKHQREVGAGYFDSIATTVDPNTSTAALKGSTEEGQFH
>CP027114.1|AZZ83482.1|329903_330647_-|hypothetical-protein
MRVTVGAFALVTGMIAVTGCSTGSAEAPAPRTPADLLLPATELPPGFAAEALSVSDLVAGNRAGIDAARTTRVTPEYCVPTADADLNGELTADNSAVLAARGGSGVLVELVTKARRDIDADRLATTGRCARTTTEITTGNLAGSRVVTEYTEIAPPEIDGGLGAGEQMLLTRSEVTTTLPDGGVRRQVGFAGYAALDRPASGPVTVQLTVSGAATPAADPPTDPTEPVDSAAMAELFGDAIGRVTVP

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Crispr_ID: CP027114_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027114_2

1748359-1748547

Orphan

Consensus_repeat	Method
GACGCACCCAGCTCCGATGCCTGAGGTGCGAGGAGCGCAAGCG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP027114_2

>merge|CP027114|2|1748359-1748547|CRISPRCasFinder
GACGCACCCAGCTCCGATGCCTGAGGTGCGAGGAGCGCAAGCGACGAGCCACGAAGGCCTGGTGAGACGACGTCGCAGACGCACCCAGCTCCGATGCCTGAGGTGCGAGGAGCGCAAGCGTCGTGCTGCGTGATCCGAAAGGGCGCGACGCACCCAGCTCCGATGCCTGAGGTGCGAGGAGCGCAAGCG

>CP027114|2|2|1748359-1748547|CRISPRCasFinder
GACGCACCCAGCTCCGATGCCTGAGGTGCGAGGAGCGCAAGCG	ACGAGCCACGAAGGCCTGGTGAGACGACGTCGCA
GACGCACCCAGCTCCGATGCCTGAGGTGCGAGGAGCGCAAGCG	TCGTGCTGCGTGATCCGAAAGGGCGC
GACGCACCCAGCTCCGATGCCTGAGGTGCGAGGAGCGCAAGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP027114.1\|AZZ81016.1\|1757937_1758762_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|236110
CP027114.1\|AZZ81004.1\|1742418_1743204_+\|hypothetical-protein	unknown	unknown	unknown
CP027114.1\|AZZ81009.1\|1748588_1749176_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP027114.1\|AZZ83630.1\|1754136_1754904_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|380141
CP027114.1\|AZZ81008.1\|1747482_1748286_+\|type-III-pantothenate-kinase	unknown	unknown	gnl\|CDD\|237347
CP027114.1\|AZZ81002.1\|1739915_1740443_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	unknown	unknown	gnl\|CDD\|223872
CP027114.1\|AZZ81010.1\|1750187_1750691_-\|TetR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|380066
CP027114.1\|AZZ81007.1\|1747014_1747455_+\|aspartate-1-decarboxylase	unknown	unknown	gnl\|CDD\|376751
CP027114.1\|AZZ81013.1\|1752528_1754112_+\|lysine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234778
CP027114.1\|AZZ81003.1\|1740439_1740955_+\|DUF3180-domain-containing-protein	unknown	unknown	gnl\|CDD\|378650
CP027114.1\|AZZ83629.1\|1749356_1750208_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|225176
CP027114.1\|AZZ81012.1\|1752015_1752471_+\|hypothetical-protein	unknown	unknown	unknown
CP027114.1\|AZZ81015.1\|1756677_1757937_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173841
CP027114.1\|AZZ81006.1\|1744961_1746014_+\|DUF2520-domain-containing-protein	unknown	unknown	gnl\|CDD\|227782
CP027114.1\|AZZ81014.1\|1755054_1756635_-\|fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|236072
CP027114.1\|AZZ83628.1\|1746067_1747012_+\|pantoate--beta-alanine-ligase	unknown	unknown	gnl\|CDD\|234741
CP027114.1\|AZZ81011.1\|1750740_1751862_+\|oxidoreductase	unknown	unknown	gnl\|CDD\|168661
CP027114.1\|AZZ81005.1\|1743223_1744660_-\|serine/threonine-protein-kinase	unknown	unknown	gnl\|CDD\|270916
CP027114.1\|AZZ81001.1\|1739547_1739919_+\|dihydroneopterin-aldolase	unknown	unknown	gnl\|CDD\|376737
CP027114.1\|AZZ83627.1\|1741115_1742285_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP027114.1\|AZZ81016.1\|1757937_1758762_+\|short-chain-dehydrogenase	gnl\|CDD\|236110	PRK07831, PRK07831, SDR family oxidoreductase.	8.4551e-164
CP027114.1\|AZZ81002.1\|1739915_1740443_+\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	6.91096e-49
CP027114.1\|AZZ81009.1\|1748588_1749176_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.25635e-10
CP027114.1\|AZZ81008.1\|1747482_1748286_+\|type-III-pantothenate-kinase	gnl\|CDD\|237347	PRK13318, PRK13318, type III pantothenate kinase.	1.8925e-116
CP027114.1\|AZZ83630.1\|1754136_1754904_-\|hypothetical-protein	gnl\|CDD\|380141	pfam18741, MTES_1575, REase_MTES_1575. Vsr REase Fold. Fused to HEPN (SWT1/Abi2 family), along with Transglutaminase and wHTH.	2.0071e-07
CP027114.1\|AZZ81007.1\|1747014_1747455_+\|aspartate-1-decarboxylase	gnl\|CDD\|376751	pfam02261, Asp_decarbox, Aspartate decarboxylase. Decarboxylation of aspartate is the major route of beta-alanine production in bacteria, and is catalyzed by the enzyme aspartate decarboxylase EC:4.1.1.11 which requires a pyruvoyl group for its activity. It is synthesized initially as a proenzyme which is then proteolytically cleaved to an alpha (C-terminal) and beta (N-terminal) subunit and a pyruvoyl group. This family contains both chains of aspartate decarboxylase.	5.02491e-78
CP027114.1\|AZZ81013.1\|1752528_1754112_+\|lysine--tRNA-ligase	gnl\|CDD\|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
CP027114.1\|AZZ81003.1\|1740439_1740955_+\|DUF3180-domain-containing-protein	gnl\|CDD\|378650	pfam11377, DUF3180, Protein of unknown function (DUF3180). Some members in this family of proteins are annotated as membrane proteins however this cannot be confirmed. Currently there is no known function.	2.87754e-36
CP027114.1\|AZZ83629.1\|1749356_1750208_+\|alpha/beta-hydrolase	gnl\|CDD\|225176	COG2267, PldB, Lysophospholipase [Lipid metabolism].	9.22233e-23
CP027114.1\|AZZ81015.1\|1756677_1757937_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173841	cd01152, ACAD_fadE6_17_26, Putative acyl-CoA dehydrogenases similar to fadE6, fadE17, and fadE26. Putative acyl-CoA dehydrogenases (ACAD). Mitochondrial acyl-CoA dehydrogenases (ACAD) catalyze the alpha, beta dehydrogenation of the corresponding trans-enoyl-CoA by FAD, which becomes reduced. The reduced form of ACAD is reoxidized in the oxidative half-reaction by electron-transferring flavoprotein (ETF), from which the electrons are transferred to the mitochondrial respiratory chain coupled with ATP synthesis. The ACD family includes the eukaryotic beta-oxidation, as well as amino acid catabolism enzymes. These enzymes share high sequence similarity, but differ in their substrate specificities. The mitochondrial ACD's are generally homotetramers and have an active site glutamate at a conserved position.	1.47826e-128
CP027114.1\|AZZ81006.1\|1744961_1746014_+\|DUF2520-domain-containing-protein	gnl\|CDD\|227782	COG5495, COG5495, Uncharacterized conserved protein [Function unknown].	6.83226e-50
CP027114.1\|AZZ81014.1\|1755054_1756635_-\|fatty-acid--CoA-ligase	gnl\|CDD\|236072	PRK07656, PRK07656, long-chain-fatty-acid--CoA ligase; Validated.	0
CP027114.1\|AZZ83628.1\|1746067_1747012_+\|pantoate--beta-alanine-ligase	gnl\|CDD\|234741	PRK00380, panC, pantoate--beta-alanine ligase; Reviewed.	3.83514e-148
CP027114.1\|AZZ81011.1\|1750740_1751862_+\|oxidoreductase	gnl\|CDD\|168661	PRK06753, PRK06753, hypothetical protein; Provisional.	3.03074e-78
CP027114.1\|AZZ81010.1\|1750187_1750691_-\|TetR-family-transcriptional-regulator	gnl\|CDD\|380066	pfam17940, TetR_C_31, Tetracyclin repressor-like, C-terminal domain. This is the C-terminal domain found in putative transcriptional regulator, TetR family proteins.	2.25486e-09
CP027114.1\|AZZ81001.1\|1739547_1739919_+\|dihydroneopterin-aldolase	gnl\|CDD\|376737	pfam02152, FolB, Dihydroneopterin aldolase. This enzyme EC:4.1.2.25 catalyzes the conversion of 7,8-dihydroneopterin to 6-hydroxymethyl-7,8-dihydropterin in the biosynthetic pathway of tetrahydrofolate.	3.83534e-45
CP027114.1\|AZZ81005.1\|1743223_1744660_-\|serine/threonine-protein-kinase	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	2.42054e-98

>CP027114.1|AZZ81008.1|1747482_1748286_+|type-III-pantothenate-kinase
MLLTVDVGNTNIHIGAYAGTGDHARLVRDWRIHTDPHYTADELAWVFRGMLGSDIEQVTGVSALSTVPSLLRELRVMLPRYFGDGPHVLLEPGVRTGVPLLVDNPKEVGTDRVSNCLAAHHEYGGPCIVVAFGTATVVDAVSAKGEFLGGAIAPGVNLAVEALSEHTVTVRKVELMPPRSVLGKNTVEALQSGILYGFAGQVDALVDRVCDTVPGFDGDDVTVVATGYLAPLMYDECRSLTDHHPHLTLEGLRLVHERSKANPRRGK
>CP027114.1|AZZ81007.1|1747014_1747455_+|aspartate-1-decarboxylase
MLRTMMTSKIHRATVTQADLHYVGSVTIDQDLLDAAGLLEGEQVTIVDIDNGARLVTYAIAGERGSGVIGINGAAAHLVHPGDLVIIIAYGMLNEAELTEYSPNVVFVDDHNRILESGDDPAHAPEGSGLLDPRQLDGPVFADATV
>CP027114.1|AZZ83628.1|1746067_1747012_+|pantoate--beta-alanine-ligase
MSVPSDETPTYEAGQMTVHREPATLTRVTRALRAAGKRVVLVPTMGALHAGHLQLVRAAKAKGNTVVVVSIFVNPLQFGANEDLDAYPRTLDADLALLEPLGVELVFVPNAASMYPNGQRTMVHPGAAGGILDGISRPTHFAGMLTVVLKLLNIVGPNAAFFGEKDYQQLVLIKQMVTDLDLDVEIVGVPTVRESDGLAMSSRNRYLTPEQRELATTLSAALVAGAHSAEGGPDAIVAAAQAVLDTVPEIDVEYLALRGRQLEEAPEKGAARLLVAARLGTARLIDNVGVNVGGLAALEEEIAWNNATTTTEGR
>CP027114.1|AZZ81006.1|1744961_1746014_+|DUF2520-domain-containing-protein
MTSPTGDPGVPFARQAGGDDAHGSTAADAFGDRPYPVRSDPFPGTSNLPAPARLTVGIVSAGRVGTALGEALEKAGHVVGAVVARSPQSRARAAARLPDSEILDLDAVVARSELLLVSVPDAQMSAVVDEIAASGALRPGTIVAHTAGAQGVDILAPVTARGALGLALHPAMTFVGSAEDTARLTNSCFAITAADPVGEAIASSLVLEMGGEPVRIAETDRTLYHAALAHGANHLIALISDAVAALNAAIDHSGRDAATVDGSGARLAERILTPLVTASLNNVLELGPAALTGPVARGDAEAVRRHLAALRAVPGGSGDHGIAEAYRTLARRAAERSDAPAALLELLEGR
>CP027114.1|AZZ81005.1|1743223_1744660_-|serine/threonine-protein-kinase
MSLEAGTQFAGYTIVRKIGAGGMGAVYLAQHPRLPRLDVIKVLAEHVSNDPTFRARFTREADLAAQLDHPCIVSVYDRGEVDGRLWISMQYVAGTDAAALVKASPGGLPLDDVAAVSDSIGAALDHAHRHGLLHRDVKPANILISAAESDTGGPEERRIRLADFGIARQTDGGTSLTSANLVLGSFPYSSPEQLSAEALDARSDVYSLACSTFELLTGTVPFTARTPMMMIHHHLTTPPPDVSSLRPGLPPAVSEAVRHGLAKNPADRPPSAGAFAAEFRYAVDTTGFFPAPGPRPAAAAPPRARPGAGTPIPPQTRTMRVRGALPPTAAAGLRTAPVAGTPRSRPADTGHVPKASSHGHGFPVATAYSELPGQTVPGPALESTMIRASGDLHVIEPPPPETDPARFTTASLACGIAAVPLSVVGGLGLPVGVAGWYLAGRGRASSAARLARTLCVLGMLLSLGLLGFTIVRAIVLQF
>CP027114.1|AZZ81004.1|1742418_1743204_+|hypothetical-protein
MSGALAGGEPGLVDRAGTPYVPLRHTDRGTAMKRSLVSASLFLPLLAWWPMVLWLFTFDPLNETPFPDYYADYVANGPATSLILIWALTALMPVYIVLVLAFWSRSMVRAAIAVPIGAIGALGFWGGQVPVLVRSGEYGILNLCSEHMPAWVVLLIVAWSIARRRHFWWVLAIPVIALLAINAYEGWATNPVDTIVDGTGDLLGVPAAEVLDPFSPRFRSPFDDAVDIIAGVVTLWIVDAVIGALARQDRPEPTTYAVDAH
>CP027114.1|AZZ83627.1|1741115_1742285_+|hypothetical-protein
MTTSNGRSADSRRSSRSAAQWLLGLLIVLALAASVLMVFTDRLSILGSLAVIAALWAAVIGAILVTKFRRQAESAEAKSRDLRLVYELQLEREIAARRQYELDVETTIRKEITAESNEELSELKAQVLALRSSLEMLLGEPLPDQRAALSSEKMRELASGLSGAHAGSFGGEFGGVPPYRSTYDDDGLRAARDFAATAPTADDGRHTGPVDPNEMTEVIPVITDDPISGRIATEVPVEEVDQHSAGSTPFAPRADESRTADAEDVSDAEVVDDSRGADESAAYTDETPTDEWATGASAEAPAETGETGAAPEEEETATSDVEAPAFLGAAGRHEGNAGRPASTFGGGRRRRAADDDSESAHSAGLPVSELLNQLRQQSGTTGGGRRRRD
>CP027114.1|AZZ81003.1|1740439_1740955_+|DUF3180-domain-containing-protein
MTLPDPRRPGQDDEETGLGPTRLRDLVVIAAVTAIAAWILVRYNYNDFPPLPLLAGVVLYVLAALEVVIAFVVRSRVESREVGRARGQLHPLTAARVLALAKASAILGAIAVGVWAGLLVFLLGQQDVTAADQDRPGAIVGLIGGVLLVCAAMWLEYCCRAPEDPPAVGDS
>CP027114.1|AZZ81002.1|1739915_1740443_+|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-diphosphokinase
MSRAVLSAGSNVGDSLGHLRSVVEGFGDELVAVSAVYATPPWGGIEQDDFLNITLIVDGPLSARQWLDRGNELEQAADRTREVRWGPRTLDVDVISVTEAGGVVVDDDPVLTLPHPRAAQRAFVLIPWLEIEPEATLWTPEGERPVRELIDALDAAERDAVRAVEHLRPAGGGAS
>CP027114.1|AZZ81001.1|1739547_1739919_+|dihydroneopterin-aldolase
MADRIELRGLKVRGNHGVFDHEREDGQDFFIDVTLWLDLRAAADTDDLAETVDYGALAQQVAAIVGGEPRNLIETVGAEVADTIMADERISACEVTVHKPSAPIPLTFDDVAVVTRRSRKGMR
>CP027114.1|AZZ81009.1|1748588_1749176_-|TetR/AcrR-family-transcriptional-regulator
MRKRPRQQRSSFTVEVILEATTQLLGTEGAALTTNGIAETAGVSVGSIYQYFGDKQAIFDELAARHLAAAEARMVAVLDAHPVEATDWPVVLRAVIAVAVAENSSHGRAHGRLRELASPGVVGDLYAGLADRLIARLVAYLVADGWMPDEAEADLRLMFPALDAQIHQFAGSGLDDDELTARIAAYTEGALRGRR
>CP027114.1|AZZ83629.1|1749356_1750208_+|alpha/beta-hydrolase
MDVHILRAMRPDAPLRVLLLHGGGGHGELVWPLGAVLAGEGYDVLAPDLPQYGRTRVADPGRVRYQDWIDLVGDLIAAETERDPRPIVVFGASLGGMLGYDVAAGGARVAAVVATCLLDLAGDPAARRAASRTPALIRLLPLMTAASRIGVFARLRFPIRWVAPMGRISNDPAVSHACIDDPRGAGSSVSLGFLADLMTHEIPAPENYRGPRVVLVHPAADTWTPPEISIRFARRIAARTDIHLLTGCGHFPVEQPGVDELAGHLRALAIELVSGSDSPERAQ
>CP027114.1|AZZ81010.1|1750187_1750691_-|TetR-family-transcriptional-regulator
MEKSAGRSTRETLLDTGLELIGTIGIRQASARAVEDASGVPHGSIRHHFGGQDGFLAALVEHVYTRDVPVDGESTLEVITRWLGADRVRTRARYELMLLATRDEVMRERMVAGRDRFVERLVERGMPLVEARQLVAALDGLVLDALLRDSDGTDADHDPTRLLRAFR
>CP027114.1|AZZ81011.1|1750740_1751862_+|oxidoreductase
MKAVVVGAGIGGLCTAAGLSSSGAEVIVLERASEVRGGGSGLSLFGNGLRALESLGLRSVVSGARGVSPTLNGARRPDGRWLTRFDPSAIEQLRVVRRTDLHEALLGRVGSGVEIRTGTGVREVRGGTVQLDDDTTIDGCDVIVGADGLRSRVRPAVTHDPGAAYSGYVAWRAITARPVDLDAAGETMGHGQRFGIAPLPDGHVYWFAAVNYDEGVETGGIDEVRERFSGWHAPIGEILEVTDPADVGVLPIEELARPLPTFVRGRCVLVGDAAHAMTPNLGQGANQAMEDAATLTALLGSAGMDVDDALRTYDRLRRRRTQRIARQASAIGKVGQWRSAPAVRLRDLAMRAAPDAALNRQLRRIQDWQPPVR
>CP027114.1|AZZ81012.1|1752015_1752471_+|hypothetical-protein
MTASVATSVVSRTIFAATAPTVAPAPAAPLSLQVSDYANAVAEGATPVDVRSHRRRQIDGALFGALAIDAVEVLDRLTPGTSESLTAARADSRWILVSEDGHEAEWLAWHLQARGVPGAVFVVGGHRRMRQAKVNGRIHPDELAMISAHES
>CP027114.1|AZZ81013.1|1752528_1754112_+|lysine--tRNA-ligase
MTGPDSVRGVSDSPTSTASTAAETTTDADDQTPEQLRIRREKRERILSEGREAYPVSIPRTHSLGEIRAAYPDLEAGTETGQHVGVSGRVIFLRNKGKLCFATLQEGDGTQLQAMISFNGVGEDALGRWKSDVDLGDIVFISGEVISSRTGELSVMADGWQMASKSLRPLPVAHKDMNEETRVRQRYVDLIMRPEARETARTRIKVMAELRAALGRRGFLEVETPMLQTLHGGAAARPFVTHSNAFDMDLYLRIAPELFLKRCVVGGIERVFEINRNFRNEGADSTHSPEFAMLETYQAYGTYDDSAKMIRELVQEVSQAALGTQTPTMPDGSTYDLSGEWTSLEMYPSLSEALGEEIVPAGNPGETTVEQLLAIAKRVGLEVPKDKGYGHGKLVEELWEHMVGEKLSEPVFIRDFPVETSPLVRSHRSVKGVVEKWDLYVRGFELATGYSELVDPVIQRERFVDQARLAAAGDDEAMVLDEEFLAAMEYGMPPTTGTGMGIDRLLMALTGLGIRETILFPLVKPRT
>CP027114.1|AZZ83630.1|1754136_1754904_-|hypothetical-protein
MACAISSDAAYRRVKSGEWIRVSRGVFHVGDRALDDRMRARIAVLSTSPRAALCSESAYWWHGFTTKAPKQIHVVTPQGRHGRAIDGVRIWHRTVAPQDLTEVDGLQITTKALTVLDAAVDGGSRLLDSALLREHTKVADVVDAQIRNSGRRGSRRSREMVAAITDGSRSEAERKALALLRSAEITGWTANAKVCGYVVDIAFIDQKVAVEIDGFAFHSDAASFQHDRTRQNVLIANGWTVLRFTRAQIDSSKPR
>CP027114.1|AZZ81014.1|1755054_1756635_-|fatty-acid--CoA-ligase
MAQTSRAGTLSVTTTPAALQRAARSWPDGIAIVDGQWLPSTDPQLELTWAQFHDAVRTFAAALVASGIEAGDRVAIWSPNSFHWPIAALGVHYAGATLVPLNTRYTAGEAIEIVERSAARGLVVSGEFLGADHAAELLRDHRGKLPDLVIRVPLSGGSPTPDGAVDWDDFLGRQTDEARTEADRRAGAVSPDDISDILFTSGTTGKSKGVLATHRQTLNGSHGWGANAGLHPGDRYLMVNPYFHTFGYKAGILPCVLFGVTMLPLAVYSPQQAMKLVSDQRATVFPGAPTIFQTILDDPKRSEYDLSSLRIVITGASIVPVVLVERLQNDLGVDTVITAYGLTEASGFVSTCTPDDDDETVANTCGRAFPGMEIKLSDVGEVLARGENVMVGYLDDPQATAETIDADGWLHTGDIGTIDERGNLKITDRLKDMYICGGFNVYPAEIEQTLARLDGVIESAVVGVPDDRLGEVGRAYLTVHDGADLDEAKVITFAKQHLANFKVPRSVVFVDQFPRNASGKILKRNL
>CP027114.1|AZZ81015.1|1756677_1757937_+|acyl-CoA-dehydrogenase
MTSINLADRGVDLGEWAKSTPNAADEFAAAVRSWLDENLTGDFAHLKGRGGPGSEHEFFAERLAWDRHLASAGWTCIGWPTEYGGRGATLEQRIIFHREYARANAPARVNHLGEELLGPTLIEYGTDEQKERFLPGIVDVTELWSQGYSEPGAGSDLAGVSTSARLDDGKWIINGQKIWTSLAHVAQWVFVIARTEKGSARHAGLSFLLVPLEQPGVTVRPIQQLTGTSEFNEVFFDDATTDADLIVGEPGDGWKVAMGLLQFERGVSTLGQQVGFARELENLTEVARASGAVADPELASRLARADIGLKVMRAHAQRTLDGDVTSQAGAASVSKLLWANWHRDLGELAMDVVGAPALIGPDATAEGQPNDIADPEHVELDEWQRLYLFTRADTIYGGSNEVQRNIIAERVLGLPREAR
>CP027114.1|AZZ81016.1|1757937_1758762_+|short-chain-dehydrogenase
MTATDAGTPLISPLATPPAEIPGHNLLLGKKVVVTAAAGTGIGFASARRALLEGADVLISDWHERRLGEAAEKLAAEFPERTIAQRTCNVQVTAEVDALIADAATELGRIDVLVNNAGLGGETPVAEMTDEEWDRVLDITLTGTFRATRAALRYFGSVEHNGVIVNNASVLGWRAQRGQAHYAAAKAGVMALTRCSALEAADMGVRINAIAPSIAKHPFLAKVTSDDLLDELASKEAYGRAAEVWEVAATVAMLASDYTTYLTGEVISISSQRA

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Crispr_ID: CP027114_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027114_3

3367084-3367144

Orphan

Consensus_repeat	Method
CGCTCCCTGAGGTGCGAGGAGCG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027114_3

>merge|CP027114|3|3367084-3367144|CRISPRCasFinder
CGCTCCCTGAGGTGCGACGAGCGTTAGCGATGCCCCCTCGCTCCCTGAGGTGCGAGGAGCG

>CP027114|3|3|3367084-3367144|CRISPRCasFinder
CGCTCCCTGAGGTGCGACGAGCG	TTAGCGATGCCCCCT
CGCTCCCTGAGGTGCGAGGAGCG

Protein	Signature genes	Signature genes Name	Protein_function
CP027114.1\|AZZ83779.1\|3358895_3359495_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|223619
CP027114.1\|AZZ82279.1\|3375302_3378644_+\|nuclease	unknown	unknown	gnl\|CDD\|227250
CP027114.1\|AZZ82278.1\|3374400_3375309_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372745
CP027114.1\|AZZ82265.1\|3359997_3361032_-\|LLM-class-F420-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274647
CP027114.1\|AZZ82271.1\|3365906_3366962_-\|MSMEG_0568-family-radical-SAM-protein	unknown	unknown	gnl\|CDD\|274940
CP027114.1\|AZZ82276.1\|3370744_3371431_+\|ZIP-family-metal-transporter	unknown	unknown	gnl\|CDD\|223505
CP027114.1\|AZZ82273.1\|3368462_3368780_-\|MSMEG_0570-family-nitrogen-starvation-response-protein	unknown	unknown	gnl\|CDD\|274939
CP027114.1\|AZZ82268.1\|3362414_3363542_-\|MSMEG_0565-family-glycosyltransferase	unknown	unknown	gnl\|CDD\|274943
CP027114.1\|AZZ83780.1\|3371441_3372557_-\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|369561
CP027114.1\|AZZ82264.1\|3359530_3359998_-\|polyketide-cyclase	unknown	unknown	gnl\|CDD\|176874
CP027114.1\|AZZ82263.1\|3357276_3358671_+\|cytochrome-P450	unknown	unknown	gnl\|CDD\|225035
CP027114.1\|AZZ82267.1\|3361407_3362418_-\|EamA-family-transporter	unknown	unknown	gnl\|CDD\|273359
CP027114.1\|AZZ82277.1\|3372682_3374203_+\|DUF3375-domain-containing-protein	unknown	unknown	gnl\|CDD\|371764
CP027114.1\|AZZ82266.1\|3361028_3361442_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378915
CP027114.1\|AZZ82275.1\|3369711_3370236_-\|MSMEG_0572-family-nitrogen-starvation-response-protein	unknown	unknown	gnl\|CDD\|188559
CP027114.1\|AZZ82269.1\|3363538_3364402_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
CP027114.1\|AZZ82270.1\|3364454_3365906_-\|AIR-synthase	unknown	unknown	gnl\|CDD\|274944
CP027114.1\|AZZ82272.1\|3367194_3368466_-\|MSMEG_0569-family-flavin-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|274942
CP027114.1\|AZZ82274.1\|3368772_3369672_-\|carbon-nitrogen-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|143587
CP027114.1\|AZZ82280.1\|3378915_3381834_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|350690

Protein	Function_ID	Function_description	E-value
CP027114.1\|AZZ83779.1\|3358895_3359495_-\|peptidylprolyl-isomerase	gnl\|CDD\|223619	COG0545, FkpA, FKBP-type peptidyl-prolyl cis-trans isomerases 1 [Posttranslational modification, protein turnover, chaperones].	2.3072e-19
CP027114.1\|AZZ82279.1\|3375302_3378644_+\|nuclease	gnl\|CDD\|227250	COG4913, COG4913, Uncharacterized protein conserved in bacteria [Function unknown].	8.25769e-104
CP027114.1\|AZZ82278.1\|3374400_3375309_+\|hypothetical-protein	gnl\|CDD\|372745	pfam13835, DUF4194, Domain of unknown function (DUF4194).	1.18038e-36
CP027114.1\|AZZ82265.1\|3359997_3361032_-\|LLM-class-F420-dependent-oxidoreductase	gnl\|CDD\|274647	TIGR03559, F420_Rv3520c, probable F420-dependent oxidoreductase, Rv3520c family. Members of this protein family are predicted to be oxidoreductases dependent on coenzyme F420. The family includes a single member in Mycobacterium tuberculosis (Rv3520c/MT3621) but four in Mycobacterium smegmatis. Prediction that this family is F420-dependent is based primarily on Partial Phylogenetic Profiling vs. F420 biosynthesis. [Unknown function, Enzymes of unknown specificity].	0
CP027114.1\|AZZ82271.1\|3365906_3366962_-\|MSMEG_0568-family-radical-SAM-protein	gnl\|CDD\|274940	TIGR04043, hypothetical_protein_WH5701_02349, radical SAM protein, MSMEG_0568 family. Members of this protein family are radical SAM proteins related to MSMEG_0568 from Mycobacterium smegmatis. Members occur within 8-gene operons in species as diverse as M. smegmatis, Rhizobium leguminosarum, Synechococcus elongatus, and Sorangium cellulosum. The function of the operon is unknown, but similarity of MSMEG_0568 to some cofactor biosynthesis radical SAM proteins suggests a similar biosynthetic function. [Unknown function, Enzymes of unknown specificity].	0
CP027114.1\|AZZ82276.1\|3370744_3371431_+\|ZIP-family-metal-transporter	gnl\|CDD\|223505	COG0428, COG0428, Predicted divalent heavy-metal cations transporter [Inorganic ion transport and metabolism].	5.3508e-11
CP027114.1\|AZZ82273.1\|3368462_3368780_-\|MSMEG_0570-family-nitrogen-starvation-response-protein	gnl\|CDD\|274939	TIGR04042, conserved_hypothetical_protein, MSMEG_0570 family protein. This small protein, about 90 residues long, has no detectable homologs outside the set used to characterize this model. Member proteins serve as markers for an eight-gene region whose overall function is unknown. One member of the cluster is a radical SAM protein with some similarity to enzymes of cofactor biosynthesis, another a glycosyltransferase, several hydrolases or oxidoreductases, and several unknown.	4.90399e-36
CP027114.1\|AZZ82268.1\|3362414_3363542_-\|MSMEG_0565-family-glycosyltransferase	gnl\|CDD\|274943	TIGR04047, MSMEG_0565_glyc, glycosyltransferase, MSMEG_0565 family. A conserved gene cluster found sporadically from Actinobacteria to Proteobacteria to Cyanobacteria features a radical SAM protein, an N-acetyltransferase, an oxidoreductase, and two additional proteins whose functional classes are unclear. The metabolic role of the cluster is probably biosynthetic. This glycosyltransferase, named from member MSMEG_0565 from Mycobacterium smegmatis, occurs in most but not all instances of the cluster. [Unknown function, Enzymes of unknown specificity].	5.28165e-150
CP027114.1\|AZZ83780.1\|3371441_3372557_-\|alpha/beta-hydrolase	gnl\|CDD\|369561	pfam07859, Abhydrolase_3, alpha/beta hydrolase fold. This catalytic domain is found in a very wide range of enzymes.	4.57391e-48
CP027114.1\|AZZ82264.1\|3359530_3359998_-\|polyketide-cyclase	gnl\|CDD\|176874	cd08865, SRPBCC_10, Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.	6.05817e-09
CP027114.1\|AZZ82263.1\|3357276_3358671_+\|cytochrome-P450	gnl\|CDD\|225035	COG2124, CypX, Cytochrome P450 [Secondary metabolites biosynthesis, transport, and catabolism].	5.02195e-68
CP027114.1\|AZZ82267.1\|3361407_3362418_-\|EamA-family-transporter	gnl\|CDD\|273359	TIGR00950, Uncharacterized_inner_membrane_transporter_YicL, Carboxylate/Amino Acid/Amine Transporter. [Transport and binding proteins, Amino acids, peptides and amines].	2.11571e-24
CP027114.1\|AZZ82277.1\|3372682_3374203_+\|DUF3375-domain-containing-protein	gnl\|CDD\|371764	pfam11855, DUF3375, Protein of unknown function (DUF3375). This family of proteins are functionally uncharacterized. This protein is found in bacteria. Proteins in this family are typically between 479 to 499 amino acids in length.	7.21279e-105
CP027114.1\|AZZ82266.1\|3361028_3361442_-\|hypothetical-protein	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	2.93352e-06
CP027114.1\|AZZ82275.1\|3369711_3370236_-\|MSMEG_0572-family-nitrogen-starvation-response-protein	gnl\|CDD\|188559	TIGR04044, MSMEG_0572_fam, MSMEG_0572 family protein. This model describes a family of proteins with remote similarity to the DsrE/DsrF-like family (see pfam02635). All members are found in a context of at least seven genes that includes a radical SAM protein, suggesting biosynthesis. The system is sparsely but broadly distributed in bacteria, including Actinobacteria, Proteobacteria, and Cyanobacteria.	1.42829e-92
CP027114.1\|AZZ82269.1\|3363538_3364402_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	1.89737e-67
CP027114.1\|AZZ82270.1\|3364454_3365906_-\|AIR-synthase	gnl\|CDD\|274944	TIGR04050, MSMEG_0567_Cter, AIR synthase-related protein, MSMEG_0567 C-terminal family. Members of this family include the C-terminal region of MSMEG_0567 from Mycobacterium smegmatis, where the N-terminal is a GNAT family N-acetyltransferase, and resemble the full length of sll0787 from Synechocystis sp. PCC 6803. The conserved cluster that contains these is found broadly (Cyanobacteria, Proteobacteria, Actinobacteria) in about 8 percent of genomes and appears to be biosynthetic. The product is unkown. [Unknown function, Enzymes of unknown specificity].	4.56733e-135
CP027114.1\|AZZ82272.1\|3367194_3368466_-\|MSMEG_0569-family-flavin-dependent-oxidoreductase	gnl\|CDD\|274942	TIGR04046, predicted_flavoprotein_involved_in_K+_transport, flavin-dependent oxidoreductase, MSMEG_0569 family. Members of this protein family belong to a conserved seven-gene biosynthetic cluster found sparsely in Cyanobacteria, Proteobacteria, and Actinobacteria. Distant homologies to characterized proteins suggest that members are enzymes dependent on a flavinoid cofactor.	0
CP027114.1\|AZZ82274.1\|3368772_3369672_-\|carbon-nitrogen-hydrolase-family-protein	gnl\|CDD\|143587	cd07197, nitrilase, Nitrilase superfamily, including nitrile- or amide-hydrolyzing enzymes and amide-condensing enzymes. This superfamily (also known as the C-N hydrolase superfamily) contains hydrolases that break carbon-nitrogen bonds; it includes nitrilases, cyanide dihydratases, aliphatic amidases, N-terminal amidases, beta-ureidopropionases, biotinidases, pantotheinase, N-carbamyl-D-amino acid amidohydrolases, the glutaminase domain of glutamine-dependent NAD+ synthetase, apolipoprotein N-acyltransferases, and N-carbamoylputrescine amidohydrolases, among others. These enzymes depend on a Glu-Lys-Cys catalytic triad, and work through a thiol acylenzyme intermediate. Members of this superfamily generally form homomeric complexes, the basic building block of which is a homodimer. These oligomers include dimers, tetramers, hexamers, octamers, tetradecamers, octadecamers, as well as variable length helical arrangements and homo-oligomeric spirals. These proteins have roles in vitamin and co-enzyme metabolism, in detoxifying small molecules, in the synthesis of signaling molecules, and in the post-translational modification of proteins. They are used industrially, as biocatalysts in the fine chemical and pharmaceutical industry, in cyanide remediation, and in the treatment of toxic effluent. This superfamily has been classified previously in the literature, based on global and structure-based sequence analysis, into thirteen different enzyme classes (referred to as 1-13). This hierarchy includes those thirteen classes and a few additional subfamilies. A putative distant relative, the plasmid-borne TraB family, has not been included in the hierarchy.	2.80183e-71
CP027114.1\|AZZ82280.1\|3378915_3381834_-\|hypothetical-protein	gnl\|CDD\|350690	cd17932, DEXQc_UvrD, DEXQD-box helicase domain of UvrD. UvrD is a highly conserved helicase involved in mismatch repair, nucleotide excision repair, and recombinational repair. It plays a critical role in maintaining genomic stability and facilitating DNA lesion repair in many prokaryotic species including Helicobacter pylori and Escherichia coli. UvrD is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	1.13347e-26

>CP027114.1|AZZ82271.1|3365906_3366962_-|MSMEG_0568-family-radical-SAM-protein
MTVSTRVDLALLGIRGEPPVQRTGGAGPSDDGHLMVDGLHAAIPRNPQSPFVFDGQRVLYDGVDVGIEVEAIGRPRFYDLQTADGISYEKIARLHGRNVLATTVVQTCIRYDESERCRFCSIEESLRSGSTIAVKKPEQLAEVARAAVELDGITQMVMTTGTTGGRDRGARHLARCVRTIKAAVPHLPIQVQCEPPADLAVLTELREAGADAIGIHVESLDDDVRRRWMPGKSSVSMAEYREAWTEAVRVFGRNQVSTYLLVGLGEDTDEMITGAKELADMGVYPFIVPFRRHAGTLAVDVDDAPAPDPAIVEKISRDVARHLTLIGMAGADQRAGCAACGACSILPTVGG
>CP027114.1|AZZ82270.1|3364454_3365906_-|AIR-synthase
MRTTSTDVVGGELSILAGRRRVAARPDFLITVADTAVEHAAYRAMRHREFVEQQELFAHTDLDDTDDDPRTVVLVATLADGTIAGGVRVAPVRWNGSSDTEDIGWWFGSRLVVADPGHAAGIGPALVRAACAHIEQQGALRFDATVQDRYARMFRRLGWDDCGAGPVIAGQAHREMRWPIHRIQRTVDGTKAVLAEALAPFADQDGGLGAAGFRGDDGVPLPGTDVIAACDAIIPSMIERDPEWAGWCSVLVNINDLSAMGARPIGLLDAVGAPTTSHLTRIIRGISAAARAWQTPVLGGHTQVGVPSSLSVTALGTTSSPLRAGGGAVGDTVTLHADLGGSWRPGYHDRQWDSTSSRSSDELCAMAGHLAKVGPASAKDVSMAGIAGTLGMLAEASGTGAELNATAVPRPNDASMGAWLTCFPGYAMLSTDRPGRRTGVPAPDALTVADCGRLTSEPGVRLRWPDGAVTVAVASTVTGLGAA
>CP027114.1|AZZ82269.1|3363538_3364402_-|carbon-nitrogen-hydrolase-family-protein
MSTATLGALAAHFGRDVERGVSKAVGIVEAAARDGVDLLVFPDATLGGYLGDLRNPDPDELPPALDPDGPELAAIIAAAGDTTVCIGYTEADGDKHFNTAVCVSGDGILGSHRKVHQPAGESLAYAAGDEFRAFDTPVGRIGMLIDYDKTFPESGRTLALDGARIIAALSAWPASVTDRAARLPADRQSRLFDLYDCARAAENQVFVVSSNQTGVMGSLRFLGQAKVVGPGGDILATTRSKGGLAGVTVDVDAEIDRARRVLSHLAELRPDTYRSARRQAGSIADLS
>CP027114.1|AZZ82268.1|3362414_3363542_-|MSMEG_0565-family-glycosyltransferase
MTGVDSPSLRVALLTYSTKPRGGVVHTLNLAEAMARLGVDVTVWSLARGGDEGFFRAVDPAVSLRLVPFADRENETITDRIVRSIDTLRDAFDASAYDIVHAQDCISANAVGTCIRTIHHLDQFTTPILVECHEKAVVNPYARICVSRAVADEVEHGWGLTPDVIPNGVAYERFADAASDVSEAVEARAQWTGKLGEYVLAVGGIEPRKGSIDLLNAYAMLRERHPELSLVFAGGETLFDYRDYRADFDRRRAELDVEPIVLGNVPDDELPSLVAASRVFAFPSVKEGFGLAAMEALSAGRPVVTRELPILREVFGDTVSYASTVPELAEALADAFTPDPTRVDAGRSLAASLTWKDAARRHLEFYARHPMPTRT
>CP027114.1|AZZ82267.1|3361407_3362418_-|EamA-family-transporter
MTHPRAAERAGIAAVILTAFLWGTSGTVAALAPALSAVTIGAVAMSGGGLLQGAINSRAVRAGWPSLVQRWPTVLAGGVCVAIYPLCFYGSMRIGGVALGTVVSLASAPLFSAVIERVAEGRALTTRWCVACALGIAGSVALALSRSESSHGDSVTGSTASAWGVVLGLGAGATYAGFSWAMRRLMNQGLARGASAGGVMGLGGVLLLPVVAVCVPSVIDHPESLGVLAYLIVVPQFLGYVLFSRGLGRIDSSTATTITLIEPAVATVLAVVVLSESITASGWAGIAVLAVALVVLMAPARRRRSVSVERRSTHNGAPAVDEEDMHEAVPRGRRGT
>CP027114.1|AZZ82266.1|3361028_3361442_-|hypothetical-protein
MKQFREAVEARDAQAMQDLLADDVVFTSPVAFKPYPGKAITSAILRGVLRVFTDFRYVREINDEGGRDSALVFEATVNGKAVTGCDFIHVDDDGKIDDFMVMVRPLSGAQALAEAMGAQFDQIAAEAAAETAGGANA
>CP027114.1|AZZ82265.1|3359997_3361032_-|LLM-class-F420-dependent-oxidoreductase
MKLGLQLGYWSAQPPAGHADLVTAAEQAGFDSIFTAEAWGSDAYTPLAWLGSSTTRVRLGTSVLQLSARTPTACAMAALTLDHLSGGRHIVGLGVSGPQVVEGWYGQKFAKPLGRTREYIDIMRQVWAREAPVTSAGPHYPLPYNGEGASGLGKPLKPITHPLRADIPVMLGAEGPKNVALAAEIADGWLPLFYTPRMADTYNAWLDEGFAKPGARRSRDDFEIIATAQIVITDDRAATYAAIKPFLALYMGGMGSEDTNFHAEVYRRMGYSDVVDEVTKLFRSNRKEEAAQIIPDAVVEDSAIVGDLDHVREQIKVWESCGVTTMLVSPRTIEEIDQLAGLIS
>CP027114.1|AZZ82264.1|3359530_3359998_-|polyketide-cyclase
MLSPARFTILDDVVAFPTPVTDTFDYLTDPSNRPAWQSSLRRIDDLRVIGDRAGDVGTSWTDVTVVPGVGPRMEVTDCEPHRLWREVGGWRSVDAVLTLGFEERSDGGTDVHAVATLTVPAIGVPLLAVNRWPAARAIRADLARAARLVAEHDGR
>CP027114.1|AZZ83779.1|3358895_3359495_-|peptidylprolyl-isomerase
MKNATLALGAALVLAVAGCSSDSDSDSGTTEATGTAAAGSTDTGSAPTSCPTASAKDGAEPQWTLKGATGEMEMVAATENEAPKITVQSPFSVDQTVVETLVEGDGPVVAETASVTVCYVGVNGRNGEEFDSAYQSGTPVDFPLNGVIPGFSKAIAGQKVGSKVGVAMTSADGYAQGQPSAGIEPGDTLIFEIGILAAS
>CP027114.1|AZZ82263.1|3357276_3358671_+|cytochrome-P450
MQTALGKLSSMYPSKERPLAEPPAGSGLKPVMGDPGIPYLGNTLQALADPLQSAMDRFERYGQVSWSGALGMNMVTLVGPDAIEAVWMNRNKAFSSELGWEPMIGPFFRRGVMLMDFDEHMQHRRIMQQAFSRPRLNGYLDIMTPHIEKTLANWQVGKGFHMYSNTKDLTLSLATEVFMGAHVSEAEAHRLEKAFEAAVRGGQAMVRKDVGNWTWAQGLRGREVLQEYFRSEIPLRRGSDADDLFTVLCNSESDEGETFTDEDIVNHMIFVMMAAHDTSTIALSMLTYFLGRHPEWQQRLREESLALNKPTIDYDDVDKLPSMELAFKETLRLNAPVGMLFRMAIEDTEICGHYIPKGTLLAIHPWATMLRKEWWPNPTHFDPERFSAERREDKVHRFAWAPFGGGAHKCIGLYFGGMEVKSILHQMLQRFEWTVPAGYKPELTYGTGPTPADGLPIDIRHRAL
>CP027114.1|AZZ82272.1|3367194_3368466_-|MSMEG_0569-family-flavin-dependent-oxidoreductase
MNTHVPVVVIGGGQAGLSVSWYLGEAGVEHVVVEAETAVHAWADKRWDNFTLVTPNWHCRLPGYAYDGPDPDGFMTRDEVVEWLTGWLQTFDPPLIEHTRVTRLQRLGADRFEVTLDGPDGVRAVTCDQAVIATGGYPLPVIPAFASALDPAVHQIHSEEYFNPEQLPEGAVLVVGSGQSGTQIAEDLHLAGRQVHLAIGNAPRVARFYRGRDCMTWLSDMGLYDTPTQEYPGGRAAQEKTNHYVTGRDGGRDIDLRRFAVEGMQLYGLLTDGKDSTLRFAPTLTDALDKADATYNSICADIDRHIDSLGIEAPEPSRYEPVWTPEVDPVELDLTAAGVTSIIWAIGYRPDYRWIEASAFDGGGRPMQTRGITEVPGLSFVGLPWMHTWGSGRFLGIDRDAEYVAEHIVGVLGENRPRLAAAQ
>CP027114.1|AZZ82273.1|3368462_3368780_-|MSMEG_0570-family-nitrogen-starvation-response-protein
MPEMTVQVRWPDGQFRQYYSPSLVLHDHLAPGSYRVDDFRARATTALEEASARVRAKYGFACTSAAASAEEIADDAARHPDSAEVEVVSMYPPLPAHTTDLRERS
>CP027114.1|AZZ82274.1|3368772_3369672_-|carbon-nitrogen-hydrolase-family-protein
MTTIGSVAANFTRDLEQNYATIEQYVVEARARGVDFLVFPEAAIGGYLSSLGNHGDTRKNSARSLPPAISLDGPEIARVQSIVGDLVVAIGFCELGEDGETRYNAAAVLDGHRIYGSYRKVHQPLGENMSYSSGEGYGVFDTPIGRVGLQICYDKAFPEAARIMALQGAEIIASLSAWPAARTATAENLQEDRWTYRFNLFDAARALENQVFWVASNQSGTFGSLRYVGNAKIVDPGGNILDTTLLGSGLAVAEVDICESFTAMRAGMFHLRDRQPDKYGLLTEPETADDLAWRDLAHA
>CP027114.1|AZZ82275.1|3369711_3370236_-|MSMEG_0572-family-nitrogen-starvation-response-protein
MPSFDETITENIAASLAEIPHPSLPKGSNIYGGTKIFPDYQAEDGETYFTLVHGIAHESSVSFVAVLQATRALRKGFESAMYFYGPGAINCLATRGFPTTGDSGFPGEQNINNALETFISEGGTVFCCRFGLALHGGREEDLIEGVIPAHPLDVQDAIIHYARKGAIINSTYMV
>CP027114.1|AZZ82276.1|3370744_3371431_+|ZIP-family-metal-transporter
MLTAILYGLVTAVPIAIGAAIGLRWDLPARVLATLMAFGAGTMIAAVSTELFQPAFTQAGIGLAGAALCLGTAVYVIADHVVETKLGSRAIGPALMLGVFLDGVPENSALGVSLTAGGSLVLVVAIAVGNVPEAVSGASLMRREHDMSPRDALVMWVVTAAILIAVTVGGYAVSDAISPTAISVVQAFAGGATLGVLANGLMPEAYREGGWWVGLATAGGFLLAFVLG
>CP027114.1|AZZ83780.1|3371441_3372557_-|alpha/beta-hydrolase
MVMADRPEVETASGPLTALAVAGLASSMLGGLARVPFKRPWSGPSGLLDNIGQSVTRQSIRTFMGYSMGLPIEEFRSMEKILDEICRVVMPPFVELTDGVELTDDTIGGVPGLWCRAKASTDAYVDEDEEKQEIGATILYLHGGGYIGTSPIMYSAFASSLVRITGFEVFIADYRMAPEFPFPAGVLDAADVYQALLGRGVSPEHIIVAGDSGGGGLAASLVAHLHEQGLPKPGAMALFSPEIDLDLDHPSITENAQYDVLPWNIPVTPYLHGVQPNDARVSIIHADPDPDWFPPTFVCWGKDEMFRDGIREFAQRLEKAEVPTHAIEEPGMFHVFPILMPWAEASKRVFRSLHDLAQGHVASDPDATQTH
>CP027114.1|AZZ82277.1|3372682_3374203_+|DUF3375-domain-containing-protein
MEISAYPAQREAGRPAAPPESVQVTLGDALEANRALQKSAAVKLFAANNSALYVTLMERHLDYGTKMSEVELTMRLERDLAELDLTDDQPTGLELVKLWARQGWLHRVTDTTDPDAPNLCHLTSEARSVLDFMRRQRREDSIATGGSITGIAAELRRVAGQVSNDPETIRLELEAQMSDLDAELADLEAGRRPPVDLRVAEDSARAIGYQMEQIISDIGQYGTMLDRITTALLDDPGDSDLAYRDRQRQLFDDYEALLQSSQSASYQAFSQMIQDPERRARLKVDIDTIIENFPGMDAGLRSVMDNFFGLVTQQMAEVGRTRQRCARRIRRFVASGTLEQSRGLARQLNDALATANDLLKSSLADRRLGYELPLAAPTLNSIGRLAFEIREHVPPAPALPAGGADADLTAFASMTGQVDTVELTETVNNAVAAGPVPLTDVIEGLDEAYLAHVIVLWSWAQKQAAEGEKVPMTTVRFRSLLGEDHAIEVPDLTFTEPIPTAEVDAE
>CP027114.1|AZZ82278.1|3374400_3375309_+|hypothetical-protein
MQDEADPPLPEEGADPSLPEVRAQRATKGPEVQDEADPSLPEVRAQRATKGPTATPDEFAGFDDLPTVANRAASHTPTAPRFDGDVSEMPDRACWALQNLLARRYVSGDRQPQLWSWVSEYQDVLRIRLSELDLRLRLVDELQVAFVEQAGYESRWGRRILKRETVHTYDAILALHLAKYIRAARDEDALITREEIHELFAGVTNTIDRDLALFDKRIERAIDKMEELEFLRKQRDDADTFTVSPVISAVMTASVITDLQRQFEQFIGSGDTGEEPPEGAADEPTQPDDAEDAYGDDEGEDW
>CP027114.1|AZZ82279.1|3375302_3378644_+|nuclease
MVSVDQYHLSRLQLINWGVFDGYHSIPFSSNGSLITGSSGSGKSSLLDAISLAFLPDHRRNFNASGDATAAGSSSGKRTVGKYVRGAWGERRDGTNAHREIMYLRGTGPAWAAIAVTYTSTSGTAITGLVLKWLAAGKMTDAHSSYFIYDGDADIVDACNEWAAANYNSAKFRDRGWRGGPGEGKYLSTLYSLIGIRGSDAAQQLLGKAKSLKSVGGLAQFVREFMLDAPTSIVGISDALEQIDPLVEARELLDVARRKRTILGNIEEVHERYASESATFSVLDTIDSTTIRSYVNNLRIRNAQPEVADLDDQITRLDGDLAALTTQHDQLRQDHSLLLARIATSTGDLAPLREQLGGAQKLSTEVTARRNAYEDKVSALGFSPPTNAEGFWSLREELIEEATKIDGQLEAGRAHYAEALAREVAARSRRDTAQEELGRVEQAGSALPRTEHEMRRVIAHALQIDESELKYVAELVELDPDDERWRLAVEKVLRNAGLRLLVPDKHFRSALRFVNSHDMRGRIQLHQAETRPMPDVEPGTLASKLRSVDPGHPCAAEAMTVLSKLGNHMCVDNPGEFSQYAKAVTDQGLRKDSAKLAVKDDRQQLRRSQYIFVGDVESKITALRDELAYEERVFEDAREDCAELDRERSAKERRRDAYRRVCEQFTQWNEIDVDSVDDRVDQLTDQYDLLIEENPDVEALQRKAEDLWEQVRHAISQAALVKDKIARQDERRTQLLDLIDRLKPEDVPAQAEKTLDGFREDLSATLDVLNPEPYRQEIVKAAGRERDRMRSDARRSRDELARILDTYDEEFPDAIPNDSDDFDERIHDYVAVCRRIDERELPSAYERMRRLITEQAPGAILGLHMAADAEERRIVEQIERVNTGLGAVAFNRGTRLRLVPGRKKLAAVEELTEKARQISNRATAVSFGDEQAILEQYSDILLLRERLAGNTPEDRQWTRDALDVRNRFDFYCEEHDAESGETIRTYSNAGDNSGGEQEKLMAFCLAGALSFNLASPHGNDNRPIFAQLMLDEAFSKSDPQFAQQALSAFRKFGFQLIIVATVQNTSTIQPYVDNVMMVSKTEVGPELRPVATATSTTIKAFSELRRSGSQLVV
>CP027114.1|AZZ82280.1|3378915_3381834_-|hypothetical-protein
MQASAAELLVELRALWNDWQERPLWYLHTFLPNVEANGARAGRSPVEQDLLRRLRAVLDESDWRNLAELVDRVDQRRVEDLVKHQDEQRARAEELARAQREAEAAERAEFMAAQRAAEQEEAAAHAKVLAEVAKREQQKSSLISSLKAEFSRDFFGAHGWWRLNDKNSLVSSAEYQNLVSDFVTDWCRHHLGTASGDARKYIPNPEQAAVIGAISSHSLVEARAGSGKTATIVARAVFLIKATSVDPSEILMLAFNAAAAAEMRDRLEKLLPGGRIPHVMTFHALAYRLVHPSENLVFDQSDSIRPLSRLVQDVIDEFISVPESQEEVRQIMLAYFRMDWESIAQRGDNLSHSDQVEYRRQHLQSETINGEFVRSYGEKLIANIMAENDLTYFYERDHRWDGFNYKPDFTVCDHDGKTSIVIEYFGLTGEADYDRLSAEKRKYWKGRPEFTFLEYNAYDVKDPSFRTRLLSNLEEAGARPNQLTDDQIWRRIKKRAIGRFTDTVTTMIGRARQRRWDSKDLHANWQEVAVSDPHLNMFIDLGARILDRYEIRLINDRKEDFTGLIWRAVDCIRAGVTQFGSAGVIDGDLRGLRFLVVDEFQDFSMMFYRLLREIVSVTGGAQVTAVGDEWQAINEFAGSTTEYFRSFEDLFTGGQRMKLSINRRSTNDLVRLGNTVMAGQGFEARGFSDNSGEIREFSMDLFSPSALEEDTFGQFDHLTPSLIRLITSHLRYGRSVAVLARVARRRYRVRIDNTDHTFYTIGDLGGFIRERLNVTEPSSLIFSSTHGFKGQESDAVILLDVDGRNYPLIHPTWVLFQVFGDDIETLTAAERRLFYVAVSRPRRYLDVITTRRDRSPFWPDADHQRVQLAGVVTRAPWSCLPDAAAPLKPDYVEIRAYISGAENFEDLRRHLQKTDFRFHQSYTRYWVRFLHKSDFSSDLLHRSRLGKYPGVRLEAWHQGQLLATHSQPSHNW

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Crispr_ID: CP027114_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027114_4

3920623-3920742

Orphan

Consensus_repeat	Method
GTGGTCTGCTCAACGCCTCCGGCGTCAGTGGTCTGCTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027114_4

>merge|CP027114|4|3920623-3920742|CRISPRCasFinder
GTGGTCTGCTCAACGCCTCCGGCGTCAGTGGTCTGCTCAACGCCTCCGGCGTCAGTGGTCTCCTTCAACGCCTCCGGCGTCAGTGGTCTGCTCAACGCCTCCGGCGTCAGTGGTCCTGCT

>CP027114|4|4|3920623-3920742|CRISPRCasFinder
GTGGTCTGCTCAACGCCTCCGGCGTCAGTGGTCTGCTC	AACGCCTCCGGCGTCAGTGGTCTCCTTCAACGCCTCCGGCGTCA
GTGGTCTGCTCAACGCCTCCGGCGTCAGTGGTCCTGCT

Protein	Signature genes	Signature genes Name	Protein_function
CP027114.1\|AZZ82681.1\|3915096_3916935_-\|long-chain-fatty-acid--CoA-ligase	unknown	unknown	gnl\|CDD\|223953
CP027114.1\|AZZ82694.1\|3936085_3936265_-\|4-oxalocrotonate-tautomerase	unknown	unknown	gnl\|CDD\|224853
CP027114.1\|AZZ82677.1\|3912085_3913495_+\|ethanolamine-ammonia-lyase	unknown	unknown	gnl\|CDD\|237897
CP027114.1\|AZZ82682.1\|3917045_3919028_-\|multidrug-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|226646
CP027114.1\|AZZ82695.1\|3936304_3936676_-\|phosphoribosyl-AMP-cyclohydrolase	unknown	unknown	gnl\|CDD\|234598
CP027114.1\|AZZ82686.1\|3922337_3923843_-\|glutamate-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|237213
CP027114.1\|AZZ82676.1\|3911061_3911853_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	unknown	unknown	gnl\|CDD\|180958
CP027114.1\|AZZ82690.1\|3931321_3932653_-\|tryptophan-synthase-subunit-beta	unknown	unknown	gnl\|CDD\|235288
CP027114.1\|AZZ82693.1\|3934496_3936089_-\|anthranilate-synthase-component-I	unknown	unknown	gnl\|CDD\|184152
CP027114.1\|AZZ82692.1\|3933714_3934500_-\|TIGR02234-family-membrane-protein	unknown	unknown	gnl\|CDD\|378200
CP027114.1\|AZZ82680.1\|3914662_3915100_-\|DUF1269-domain-containing-family-protein	unknown	unknown	gnl\|CDD\|377730
CP027114.1\|AZZ82684.1\|3919704_3920583_-\|acyl-CoA-thioesterase-II	unknown	unknown	gnl\|CDD\|224857
CP027114.1\|AZZ82689.1\|3930515_3931325_-\|tryptophan-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|237285
CP027114.1\|AZZ82675.1\|3910278_3911028_-\|2-hydroxycyclohexanecarboxyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|132250
CP027114.1\|AZZ82683.1\|3919229_3919694_-\|hypothetical-protein	unknown	unknown	unknown
CP027114.1\|AZZ82678.1\|3913491_3914292_+\|ethanolamine-ammonia-lyase	unknown	unknown	gnl\|CDD\|235482
CP027114.1\|AZZ82687.1\|3923835_3928407_-\|glutamate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|236968
CP027114.1\|AZZ82688.1\|3928744_3930391_-\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|237284
CP027114.1\|AZZ82679.1\|3914313_3914649_-\|SHOCT-domain-containing-protein	unknown	unknown	gnl\|CDD\|378276
CP027114.1\|AZZ82691.1\|3932714_3933533_-\|indole-3-glycerol-phosphate-synthase-TrpC	unknown	unknown	gnl\|CDD\|234710

Protein	Function_ID	Function_description	E-value
CP027114.1\|AZZ82694.1\|3936085_3936265_-\|4-oxalocrotonate-tautomerase	gnl\|CDD\|224853	COG1942, COG1942, Uncharacterized protein, 4-oxalocrotonate tautomerase homolog [General function prediction only].	8.13454e-13
CP027114.1\|AZZ82677.1\|3912085_3913495_+\|ethanolamine-ammonia-lyase	gnl\|CDD\|237897	PRK15067, PRK15067, ethanolamine ammonia-lyase subunit EutB.	0
CP027114.1\|AZZ82693.1\|3934496_3936089_-\|anthranilate-synthase-component-I	gnl\|CDD\|184152	PRK13571, PRK13571, anthranilate synthase component I; Provisional.	0
CP027114.1\|AZZ82682.1\|3917045_3919028_-\|multidrug-ABC-transporter-ATP-binding-protein	gnl\|CDD\|226646	COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only].	0
CP027114.1\|AZZ82695.1\|3936304_3936676_-\|phosphoribosyl-AMP-cyclohydrolase	gnl\|CDD\|234598	PRK00051, hisI, phosphoribosyl-AMP cyclohydrolase; Reviewed.	3.90312e-67
CP027114.1\|AZZ82686.1\|3922337_3923843_-\|glutamate-synthase-subunit-beta	gnl\|CDD\|237213	PRK12810, gltD, glutamate synthase subunit beta; Reviewed.	0
CP027114.1\|AZZ82676.1\|3911061_3911853_-\|1,4-dihydroxy-2-naphthoyl-CoA-synthase	gnl\|CDD\|180958	PRK07396, PRK07396, dihydroxynaphthoic acid synthetase; Validated.	5.75964e-131
CP027114.1\|AZZ82690.1\|3931321_3932653_-\|tryptophan-synthase-subunit-beta	gnl\|CDD\|235288	PRK04346, PRK04346, tryptophan synthase subunit beta; Validated.	0
CP027114.1\|AZZ82679.1\|3914313_3914649_-\|SHOCT-domain-containing-protein	gnl\|CDD\|378276	pfam09851, SHOCT, Short C-terminal domain.	1.03904e-09
CP027114.1\|AZZ82692.1\|3933714_3934500_-\|TIGR02234-family-membrane-protein	gnl\|CDD\|378200	pfam09534, Trp_oprn_chp, Tryptophan-associated transmembrane protein (Trp_oprn_chp). Members of this family are predicted transmembrane proteins with four membrane-spanning helices. Members are found in the Actinobacteria (Mycobacterium, Corynebacterium, Streptomyces), always associated with genes for tryptophan biosynthesis.	1.44451e-32
CP027114.1\|AZZ82680.1\|3914662_3915100_-\|DUF1269-domain-containing-family-protein	gnl\|CDD\|377730	pfam06897, DUF1269, Protein of unknown function (DUF1269). This family consists of several bacterial and archaeal proteins of around 200 residues in length. The function of this family is unknown. The family carries a repeated glycine-zipper sequence- motif, GxxxGxxxG, where the x following the G is frequently found to be an alanine. As glycine-zippers occur in membrane proteins, this family is likely to be found spanning a membrane.	0.00169529
CP027114.1\|AZZ82684.1\|3919704_3920583_-\|acyl-CoA-thioesterase-II	gnl\|CDD\|224857	COG1946, TesB, Acyl-CoA thioesterase [Lipid metabolism].	5.40345e-107
CP027114.1\|AZZ82689.1\|3930515_3931325_-\|tryptophan-synthase-subunit-alpha	gnl\|CDD\|237285	PRK13111, trpA, tryptophan synthase subunit alpha; Provisional.	6.83765e-119
CP027114.1\|AZZ82675.1\|3910278_3911028_-\|2-hydroxycyclohexanecarboxyl-CoA-dehydrogenase	gnl\|CDD\|132250	TIGR03206, benzo_BadH, 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.	9.06982e-77
CP027114.1\|AZZ82678.1\|3913491_3914292_+\|ethanolamine-ammonia-lyase	gnl\|CDD\|235482	PRK05465, PRK05465, ethanolamine ammonia-lyase subunit EutC.	2.74893e-115
CP027114.1\|AZZ82687.1\|3923835_3928407_-\|glutamate-synthase-large-subunit	gnl\|CDD\|236968	PRK11750, gltB, glutamate synthase subunit alpha; Provisional.	0
CP027114.1\|AZZ82688.1\|3928744_3930391_-\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|237284	PRK13108, PRK13108, prolipoprotein diacylglyceryl transferase; Reviewed.	1.51039e-152
CP027114.1\|AZZ82681.1\|3915096_3916935_-\|long-chain-fatty-acid--CoA-ligase	gnl\|CDD\|223953	COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid metabolism].	0
CP027114.1\|AZZ82691.1\|3932714_3933533_-\|indole-3-glycerol-phosphate-synthase-TrpC	gnl\|CDD\|234710	PRK00278, trpC, indole-3-glycerol phosphate synthase TrpC.	1.36332e-132

>CP027114.1|AZZ82684.1|3919704_3920583_-|acyl-CoA-thioesterase-II
MTVEQAGDLGKLLALLDVERRDEDVFIGQHPEQVTARTFGGQLLGQGVVAASRSLTRGNPPIHALHAHFIRGGDVTKPMEYHVDRFRDGKSFANRQVTAKQDGEEIFTMLVAFQDNTAGLEHAVEIPQVPYPEELPPLGEHFKGYEDRIATFVNALHPVDIRFANDPSWKAKEAGRKLTDNRVWMKADGVMPDDPVMHVAAMCYASDTTVLDSIITTHGLSWGIDRLFAATVNHSMWFHREFRFDDWLLYATRSPVATGSRGMGSGRFWTRDGTLATSVVQEALIKYFPPKK
>CP027114.1|AZZ82683.1|3919229_3919694_-|hypothetical-protein
MTIGQEMWLDPGPPLPRRTWQRRTRVPVIVGTTIAMVLFAAVALGALLSGVLRTPTFTAKGGVVADCATEVAAAPGGGQIARGTPVFVYDAAGGEVATTSLTGFLRSDTGCQLTFEVDGVEYTDAGYVVRVGESLSQPVSTAALQKGAVLRPFG
>CP027114.1|AZZ82682.1|3917045_3919028_-|multidrug-ABC-transporter-ATP-binding-protein
MEYSIDWGNEVWASLKWLAIAFGISAVAMLVIGFLLARFSRWGRPLWRVIGGFFTEPGTRLKAWGLAALLTVLALLGVRITVLFSYFSNDLFTGLQTAAEGLGAGGPQGAEMLQMGKDAFWHSMAVFGILATVHVVRTMIEIYVGAAFEINLRRWMTGGAAADWMDGRAFYRNRFVDLSSGLMRRKWFRRTSEPSQKPTDIHPGVDNPDQRIQADITNVASVGSSLLWGGGGSSTNGVLTAVASIASFSKILWDLSGPVTLLGVEIPRMMMWLVLVYVLVTSVVAFAIGRPLIRLNFWQERLTANFRYALVRVRDGAENIAFYRGERVEHNGLMSRFAAVIKNYWQIIHVQMAFVGWNFSVSQLAVVFPYLVQIPRFFDGQIKLGDMQQTASAFGEMHDALSFFRTAYDDFTGLRASIIRLDGLADADVKSRAMPEITTVDRDRAVRLADISVKTPTGDELIRALNISLDPGDALVVKGRSGSGKTTLLRGLAGLWPFIDGEFSRPPDAHTLFLSQMPYIPLGDLRTAVAYPALPDDVGDEAIKQALEQVFLPHLTGRLYDEEDWAKVLSPGEQQRVAFARILLTKPQAVFMDEATSAVDEGLEYALYQLVRTELPDTILVSVSHRSTTDQHHTEVLELTGGGAWTLSSIDSSPSLDKRS
>CP027114.1|AZZ82681.1|3915096_3916935_-|long-chain-fatty-acid--CoA-ligase
MTAADLITFPHETGVDVSTLPAAFQQTVTVRPDAVAIRTVGGIQQLTWSQYATRVEAIAGGLAALGVGRGDTVGIMLTNRPEFHLVDTAALHLGAVPFSIYNTSAPDQIEYLFGNAENKIVITEQVFLPVITAANTGVERIVVVDGVADGAISLDDVERTPPPEGFDFAASWQAVEPEDLATLIYTSGTTGPPKGVEITHRNIVAEMAALAEKLDVGFDDRSISYLPAAHIADRVSSHAANLMRGIQITTVPDPREVATALPEVHPTFFFGVPRVWQKIRAGIEAKVAEESSPVKRALAGWAFGVGASTAQARIDGKGSGLLGGVQHGIADKLVLHKVRAALGLDEVVFAGSGAAAIPVEVLKFFLGLGIPILEVWGMSETTGVSTMTTPDNLKIGTVGPPIRGMEVRLADDGELLVRGPVVMRGYRNQPEKTAETIDADGWLSTGDIATIDDDGNVIIVDRKKELIINESGKNMSPTNIENAMKAASSLIGQVAAIGDSKPYVSALVVLDPEAVAVRAKRLSMPNADLAELSTHPEIVEEVSSAIRTGNGKLSRVEQVKRFTIVPAAWDPGGDELTPTMKLRRNPIAAKYAAEIGALYESEPGGSVVDLRS
>CP027114.1|AZZ82680.1|3914662_3915100_-|DUF1269-domain-containing-family-protein
MTADDDSAGPELGPVDYVVVEWAGTQPTGEALPYLMDLIDRGIVRLIDIVFVSKATDGTIAELGIGELGAEFAIFDGAATSILDDTDIREAAAALEPGSSAAILVWENQWAAPFATALRNNGGRVVASGRIPVDALLETLDAIEE
>CP027114.1|AZZ82679.1|3914313_3914649_-|SHOCT-domain-containing-protein
MPGLIRGVARTAVISGTATAVSNRVSRRQASRWAQQGTVTQQDPTAQQYPPPQYAPTPYPESPPPPQPPRPPAQSSSTDTITALKELGALYQQGILTEAEFAAQKAKILGM
>CP027114.1|AZZ82678.1|3913491_3914292_+|ethanolamine-ammonia-lyase
MSTPDRSPVSDGDDVWAAMRRTTQARIGLGRAGNSLPSRRVLEFQAAHAAARDAVHEPLDAEAFAESLADLDLGDPVVVTSRASDRGEYLRRPDLGRMPEDLSALTECGAEIGIVIADGLSPRAVVDHAHGLVAALLDAFEDRYTIAPPVIATQARVALGDHIGEALGATTLIVIIGERPGLSVADSLGIYLTHLPRPGRTDADRNCISNIHPPDGLHYEVAARITTALVDGARKLGRSGVALKDTSRQAALENLDDADELTVEPS
>CP027114.1|AZZ82677.1|3912085_3913495_+|ethanolamine-ammonia-lyase
MRFTQTISGTTYEFDGLVELMAKATPRRSGDELAGCAATSDAERAAAAWQLADVPLSDFLVDLLVPYESDEVTRLIVDTHDRAAFDEISHLTVGGFRDWLLEISTRAGAAERIARISPAVTPEMAAATSKIMRNQDLILVASAIRVTSAFRTTIGLPGRIATRLQPNHPTDDPRGIAAATLDGLLMGCGDAVIGINPASDSPQATADLLHMLDEIRQRFEIPMQSCVLSHVTTTVDLIGQDVPVDLVFQSIAGTEGANTGFGVNLSILQEANEAGRSLRRGTVGDNVMYLETGQGSALSAGAHLGTGGKPVDQQTLETRAYAVARALDPLLINTVVGFIGPEYLYDGKQIIRAGLEDHFCGKLLGLPMGVDVCYTNHAEADQDDMDTLLTLLGVAGAAFVIAVPGADDVMLGYQSLAFHDALYVRQALGLRPAPEFEAWLARLGMSDADGRILPVDPASSPLLPLAAGR
>CP027114.1|AZZ82676.1|3911061_3911853_-|1,4-dihydroxy-2-naphthoyl-CoA-synthase
MDYEDIDYTVEGPTAIITMNRPHRYNAFRAKTVEEMINAFRRAWADNGVQAVILTGAGEKAFCTGGDVKQRAETGDYGPSESGMFEIGNLHKTIRDIPKPVIAAVNGLAIGGGHVLHVLCDLTIAADTARFGQSGPKVGSFDAGFGSAFLARVVGEKRAREIWYLCRQYDAETAERWGLVNWVVPAADLLDEAKKIAAEIAEKSPTTLRFLKQSFNADTDHQAGLSNLAMSALDLFTHSPEGLEGANAFAEKRAPQFNQYVGA
>CP027114.1|AZZ82675.1|3910278_3911028_-|2-hydroxycyclohexanecarboxyl-CoA-dehydrogenase
MSDKHIAVVTGAGSGIGKAIALGFAAEGTTVVAADLDLDAAKRTAEEAGSIIPMAVDVADRAKVDELRDAVNAEVGVPDILVNAAGWDRTDQFLNATTEFAEKVVAINYLGPVHMASAFLPGMVEASKADGWQGGRVVNLASDAGRVGSAGETIYAGAKGGVIALSKSLAREMARYQITVNAVCPGPTDTPLFQAQPEKLKEALVKAIPFRRLARPDEVAAPVLFFASPAASFITGQVISVSGGLTMAG
>CP027114.1|AZZ82686.1|3922337_3923843_-|glutamate-synthase-subunit-beta
MADPRGFLEVPKKEAKYRPVAERVQDWDDVYVHADDPTKVLAEVSTQARRCMDCGIPFCHSGTAGCPLGNLIPEWNDLVRRGRWDAASSRLHATNNFPEFTGMVCPAPCEAACVLSISERETGGSVTIKRIEKTIAYESWAEGVIGPEPPESKTGKSVGVVGSGPAGLAAAQQLTRAGHDVTVYERDDRLGGLLRYGIPEYKLQKSDIDRRIAQMRAEGTEFVTSCDVGTDLTVEDLRARHDAVVLAIGAMEARDNPVPGRELNGVHLAMEHLVPANRECEGDGPSPITAAGKHVVIIGGGDTGADCLGTAHRQGAASVVQLDYNPELPDERDDSRSPWPTWPLVMRTSSAHAEGGERKYQVAVQRFLGDVEGNVTTMVLAEVEVQRDADGRREIRPVGDEFEIPCELALFAIGFAGVERGELLSGLEIEPNKRGAISCGSDWQTDAPGIFVCGDAHRGASLVVWAIAEGRSTARAVDEFLVGESDLPSPVRPAALPLSVR
>CP027114.1|AZZ82687.1|3923835_3928407_-|glutamate-synthase-large-subunit
MLFSALPAKQGLYDPEAEVDSCGVAMVTDIHGRRSHSIVADGLLALENLEHRGAAGAETNSGDGAGILIQLPDELLRATVDFELPEPAADGSHTYAAGTCFLPMDEELRRQAIARVEALAADEGITILGWRDVPVDHEHADIGGTAVACMPYMMQLFVTVDPEPGAERIGGVAVDRFIYPFRKQAERVTPEIEQAGTGLYFPSLSSRTMVYKGMLTTMQLPLYYADLRDDRCQSAIAIVHSRFSTNTFPSWPLAHPFRFVAHNGEINTVRGNRNRMRAREALLDTDLIPGDLKRAFPICTPEASDSASLDEVLELLHLGGRSVPHAVMMMVPEAWENVPDMDPKRRAFLQFNASLMEAWDGPACVTFTDGTVVGAVLDRNGLRPGRWWQTRDGRIILASEAGVLDVPVDDIISKGRLEPGRMFLVDTTAGRIIPDEEIKGELMHAEAYDEWLHAGLLDIATLPERPVFQPNHDTVVRRQQSFGYTEEDLRVLLTPMAASGYEPLGSMGTDTPIAVLSRRSRLLYDYFVELFAQVTNPPLDAIREEIVTSMGRVMGPEQNLLDPTAASCRQIMLHWPVLDNADLAKLVHINDDGDHPGLSAKVLRALYEVDDGGEGLRVALEDLRRRASQAIAEGHTTLVISDRLTDKDHAPIPSLLAISAVHHHLVRTKERTRVALVVESGDAREVHHIATLIGFGAAAVNPYLALETIEDLIAEGELTGVTPSKAIRNYLEALGKGVLKVMSKMGISTISSYTAAQAFEAVGLSSEVVREYFTRTVSRIEGVGLDELAEEVRIRHHRAFPENPTEQVYRRLEVGGEYQYRREGELHLFTPETIFLLQHATKSGRSEIFQKYSDEVDRLSRKGGTLRGLFEFDLDAREPIPIAEVEPVEEIMKRFNTGAMSYGSISAEAHETIAMAMNKIGGRSNSGEGGEDVDRLYDPERRSAVKQVASGRFGVTSDYLINATDIQIKMAQGAKPGEGGQLPAYKVYPWIAKTRHSTPGVALISPPPHHDIYSIEDLAQLIHDLKNANSQARIHVKLVSAVGVGTVATGVSKAHADVVLISGHDGGTGASPLTSLKHAGTPWEIGLADAQQTLMLNGLRDRITVQCDGALRTGRDVIMAALLGAEEYGFSTAPLIVAGCIMMRVCHLDTCPVGVATQNPQLRSRFTGQVDHLVNFFRFIAEDVRKHLAQLGYRTLDEAIGQSQRLHTDSAVAHWKSKGLDLSPIFRKVEGKGPSRRVREQYHALDRALDQTLIQLAEGALEDAHPVTLELPVRNVNRTVGTLLGAEVTRRFGAEGLAEDTIVVKLEGSAGQSLGAFLPPGVTIRLSGDTNDYVGKGLCGGKIVVAPHPDSWFVAEDQVIAGNTILYGATSGEVYLRGRVGERFSVRNSGATAVVEGVGDHACEYMTGGRVVILGPTGRNLAAGMSGGIAFVHDLDRDKVNMAMVKLMRPDPDDLAWLKDAITKHAELTGSAIGASILADWPRRCLAFTKVMPTDYKRVLDAARMAEAEGRDVDSAIMEAARG
>CP027114.1|AZZ82688.1|3928744_3930391_-|prolipoprotein-diacylglyceryl-transferase
MLAYIPSPPQGVWDLGPFPLRAYALCIIAGIIVAVWWGNRRWVARGGQEGEVLDVAIWAVPFGLLGGRLYHLITDWKTYFGADAPKEPLDALRIWDGGLGIWGAVALGAVGAWIGARRRGIRLPAFGDAIAPPILLAQAIGRLGNYFNQELYGRETTLPWGLEIYERVNKAGYADAGLIDGKSNGVVVAVVQPTFLYELLWNVLIVVLLVVIDRKFRIGHGRLFALYIAGYCLGRFFIEMLRDDRAAVANDIAGIRPNLFTAALVFVCAIVYFVVAPKGREQGLEMYHPERAAELEEQGVAGYVDDWYDEDFDELDAAEGQEPPAEVDTLDALDAEADKVETTRVAAEPAAAAKVSDDEPAAEPVVDETAAGETETEEPVTEEAEAATGAVETEAVDSDAGESGAPESADAGVAEPEVAEPEVAEPEAEDDATTDAEATDTEAVDAATANAAEDDEADSVVENEDPASQVVESEDATTGVAESEEQATGVVESDPESSAVETDAPETGDAESSAADSADVQATDAGQADASSSLRRRVASRFGRRRRP
>CP027114.1|AZZ82689.1|3930515_3931325_-|tryptophan-synthase-subunit-alpha
MSANTISSKTGPVFAKCREENRSALIGYLPVGYPTLEGSLTSFRTMVDAGCDIIEVGVPYSDPVMDGPTIQEAADLALTNGVRVRDVFTAVEAISSAGGAAVVMSYWNPVLQYGVENFARDLADAGGAGLITPNLIPEEGAQWHAASDQYGLDRIYLVAPSSTNERIALTVDASRGFVYAASTMGVTGARDAVSDMAPELCARVREYSDIPIGVGLGVRNREQAAQIASYSDGVIVGSALVTAAKAGQDRLASLVGELAEGVRSRHAAV
>CP027114.1|AZZ82690.1|3931321_3932653_-|tryptophan-synthase-subunit-beta
MTAHPDSAHPDSSATVLPPASTGLTTRTSIEPDEGGHFGVYGGRHVPEALMAVIDEVTTTFFKIRNDDAFLNELDRLQRDYAGRPSPLYEAKRLAEYAGGARIFLKREDLNHTGSHKINNVLGQALLAQRMGKNRIIAETGAGQHGVATATACALLGLECVIYMGRVDTDRQALNVARMRLLGAEVIAVDNGSATLKDAINEAMRDWVTNAHNTYYCFGTAAGPHPFPVMVRDLQRVVGLEARAQILDKAGRLPDAVTACVGGGSNAIGIFHPFIDDSDVRLVGFEAAGDGVETGRHAATFTGGTPGAFQGAYSYLLQDEDGQTTESHSISAGLDYPGVGPEHAYLKDTGRAEYRPITDTEAMNALALLSRREGIIPAIESAHAVAGALELGKELGEGAIIVVSLSGRGDKDVDTAARWFGLFDPPPSQDEAKATSGQPGERA
>CP027114.1|AZZ82691.1|3932714_3933533_-|indole-3-glycerol-phosphate-synthase-TrpC
MSMPNVLESIIEGVKADVAAREAMTDFAAVKAASAKAPAPRDAMVALRQPGIGVIAEVKRASPSKGELASIGDPAELAKAYEDGGARIISVLTEERRFHGSLADLDAVRAAVDIPVLRKDFIVGPYQIHEARAHGADVILLIVAALEQNVLASLLDRTESLGMTALVEVHTEEEADRALEAGASVVGVNARNLKTLQVERDTFSRIAPGLPTEIIRIAESGVRGTADLLAYAGAGADAVLVGEGLVTSGDPRAAVRELVTAGTHPSCPKPVR
>CP027114.1|AZZ82692.1|3933714_3934500_-|TIGR02234-family-membrane-protein
MTSADQPAESSQPESSQPKPKSSRRPQMIAAVLMLATAAAFWGASRLTWATVSAEDGLSPQRAFDVKGSDWSPWLTPLALVYLAGIAAVLSVRGWGLRLVALLVAAGGVLAAFPAISLIAGGADSEYAADAGDIPDRYIVLYTDTQWLPAALVLLGTVCAVAAAVVLLRVAKGATMSSKYKTPAARREELETEIFADYERRKRAAAADSAKAGDTPADADADADAGTRGKDRRPGDDPDANERMMWDALDTGIDPTDPDER
>CP027114.1|AZZ82693.1|3934496_3936089_-|anthranilate-synthase-component-I
MSGVNAAAGAHTTSLAEFLDLARDHRVVPVTRKVLADSETPLSAYRKLAGDRPGTFLLESAENGRSWSRWSFIGAGAPSALTVVDGQAHWWGSVPVGAPEGGEALEVLAESLRVLKTDPLPGMPPLTGGFVGFMAYDMVRRLERLPETTVDDLGLPDMMMVLATDLAAVDHHEGTITLIANAVNWDGSDERVEEAYADALARLDRMTEALAAPASSTVSTFDRPTPDFTAQRTLEEYSEIVTSLVGEIEAGEAFQVVPSMRFEMDTEADPLDVYRVLRASNPSPYMYLLRMPGTEANSDTAAPDAIARKPFTIVGSSPEALVTVADRIATTHPIAGTRWRGATEEEDQLLGKGLLEDEKENAEHLMLVDLGRNDLGRVCVPGTVKVSDYRHIERYSHVMHLVSTVSGTLREDKHALDAVTACFPAGTLTGAPKVRAMELIDEHEKTRRGLYGGIVGYLDFAGNADTAIAIRTALLARGQAYVQAGGGVVADSEPEYEYNEARNKATAVLNAVAAASTMNRVGETPSGDIA
>CP027114.1|AZZ82694.1|3936085_3936265_-|4-oxalocrotonate-tautomerase
MPLIQISQTPGLSDRVKRETIAAVTEAYAKATGKNPDSVWVTITEVPRTQWGVGGEPLG
>CP027114.1|AZZ82695.1|3936304_3936676_-|phosphoribosyl-AMP-cyclohydrolase
MALDPELASRLKRNADGLFSAVAQERSTGDVLMVAWMDDAALERTLATRKATYYSRSRQEYWVKGETSGHTQYVHDARLDCDGDTVLLVVDQVGAACHTGNHSCFDTESLSFGADARPVDSAQ

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Crispr_ID: CP027114_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP027114_5

4309397-4309489

Orphan

Consensus_repeat	Method
CTCGCTACGCTCCCGGCGCGGAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP027114_5

>merge|CP027114|5|4309397-4309489|CRISPRCasFinder
CTCGCTACGCTCCCGGCGCGGACACAACCCGCCCGCTCGCTACGCTCCCGGCGCGGACACAACCCGCCCGCTCGCTACGCTCCCGGCGCGGAC

>CP027114|5|5|4309397-4309489|CRISPRCasFinder
CTCGCTACGCTCCCGGCGCGGAC	ACAACCCGCCCGCTCGCTACGCTCCCGGCGCGGACACAACCCGCCCG
CTCGCTACGCTCCCGGCGCGGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP027114.1\|AZZ82992.1\|4307891_4308839_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226309
CP027114.1\|AZZ82987.1\|4302828_4303512_+\|PIG-L-family-deacetylase	unknown	unknown	gnl\|CDD\|225031
CP027114.1\|AZZ82989.1\|4303872_4305600_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP027114.1\|AZZ82995.1\|4312261_4313134_-\|fatty-acid-desaturase	unknown	unknown	gnl\|CDD\|153109
CP027114.1\|AZZ82997.1\|4315677_4316898_-\|DUF885-domain-containing-protein	unknown	unknown	unknown
CP027114.1\|AZZ83000.1\|4318630_4319794_+\|acyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|173848
CP027114.1\|AZZ82994.1\|4311245_4312265_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
CP027114.1\|AZZ83001.1\|4319884_4320343_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|225039
CP027114.1\|AZZ82999.1\|4317986_4318559_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP027114.1\|AZZ83002.1\|4320369_4321164_-\|NmrA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|187579
CP027114.1\|AZZ82996.1\|4314638_4315658_+\|IS481-family-transposase	unknown	unknown	gnl\|CDD\|366234
CP027114.1\|AZZ82991.1\|4307698_4307905_+\|hypothetical-protein	unknown	unknown	unknown
CP027114.1\|AZZ83861.1\|4313202_4314480_-\|serine-hydroxymethyltransferase	unknown	unknown	gnl\|CDD\|234571
CP027114.1\|AZZ82988.1\|4303664_4303844_+\|hypothetical-protein	unknown	unknown	unknown
CP027114.1\|AZZ82985.1\|4298583_4299579_+\|fructose-bisphosphatase-class-II	unknown	unknown	gnl\|CDD\|236536
CP027114.1\|AZZ83860.1\|4305846_4306494_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP027114.1\|AZZ82990.1\|4306677_4307553_+\|Usp-family-protein	unknown	unknown	gnl\|CDD\|366180
CP027114.1\|AZZ82986.1\|4301402_4302815_+\|aspartate-ammonia-lyase	unknown	unknown	gnl\|CDD\|234779
CP027114.1\|AZZ83859.1\|4299697_4301395_+\|fumarate-hydratase	unknown	unknown	gnl\|CDD\|237955
CP027114.1\|AZZ82998.1\|4317024_4317966_+\|type-I-pantothenate-kinase	unknown	unknown	gnl\|CDD\|235466

Protein	Function_ID	Function_description	E-value
CP027114.1\|AZZ82992.1\|4307891_4308839_-\|hypothetical-protein	gnl\|CDD\|226309	COG3786, COG3786, Uncharacterized protein conserved in bacteria [Function unknown].	2.81224e-31
CP027114.1\|AZZ82987.1\|4302828_4303512_+\|PIG-L-family-deacetylase	gnl\|CDD\|225031	COG2120, COG2120, Uncharacterized proteins, LmbE homologs [Function unknown].	2.09275e-23
CP027114.1\|AZZ82989.1\|4303872_4305600_-\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.90659e-34
CP027114.1\|AZZ82995.1\|4312261_4313134_-\|fatty-acid-desaturase	gnl\|CDD\|153109	cd01050, Acyl_ACP_Desat, Acyl ACP desaturase, ferritin-like diiron-binding domain. Acyl-Acyl Carrier Protein Desaturase (Acyl_ACP_Desat) is a mu-oxo-bridged diiron-carboxylate enzyme, which belongs to a broad superfamily of ferritin-like proteins and catalyzes the NADPH and O2-dependent formation of a cis-double bond in acyl-ACPs. Acyl-ACP desaturases are found in higher plants and a few bacterial species (Mycobacterium tuberculosis, M. leprae, M. avium and Streptomyces avermitilis, S. coelicolor). In plants, Acyl-ACP desaturase is a plastid-localized, covalently ACP linked, soluble desaturase that introduces the first double bound into saturated fatty acids, resulting in the corresponding monounsaturated fatty acid. Members of this class of soluble desaturases are specific for a particular substrate chain length and introduce the double bond between specific carbon atoms. For example, delta 9 stearoyl-ACP is specific for stearic acid and introduces a double bond between carbon 9 and 10 to yield oleic acid in the ACP-bound form. The enzymatic reaction requires molecular oxygen, NAD(P)H, NAD(P)H ferredoxin oxido-reductase and ferredoxin. The enzyme is active in the homodimeric form; the monomer consists mainly of alpha-helices with the catalytic diiron center buried within a four-helix bundle. Integral membrane fatty acid desaturases that introduce double bonds into fatty acid chains, acyl-CoA desaturases of animals, yeasts, and fungi, and acyl-lipid desaturases of cyanobacteria and higher plants, are distinct from soluble acyl-ACP desaturases, lack diiron centers, and are not included in this CD.	7.16771e-40
CP027114.1\|AZZ83000.1\|4318630_4319794_+\|acyl-CoA-dehydrogenase	gnl\|CDD\|173848	cd01159, NcnH, Naphthocyclinone hydroxylase. Naphthocyclinone is an aromatic polyketide and an antibiotic, which is active against Gram-positive bacteria. Polyketides are secondary metabolites, which have important biological functions such as antitumor, immunosupressive or antibiotic activities. NcnH is a hydroxylase involved in the biosynthesis of naphthocyclinone and possibly other polyketides.	1.38183e-85
CP027114.1\|AZZ82994.1\|4311245_4312265_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.77155e-25
CP027114.1\|AZZ83001.1\|4319884_4320343_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|225039	COG2128, COG2128, Uncharacterized conserved protein [Function unknown].	4.15614e-20
CP027114.1\|AZZ82999.1\|4317986_4318559_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	1.1305e-08
CP027114.1\|AZZ83002.1\|4320369_4321164_-\|NmrA-family-transcriptional-regulator	gnl\|CDD\|187579	cd05271, NDUFA9_like_SDR_a, NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, subunit 9, 39 kDa, (NDUFA9) -like, atypical (a) SDRs. This subgroup of extended SDR-like proteins are atypical SDRs. They have a glycine-rich NAD(P)-binding motif similar to the typical SDRs, GXXGXXG, and have the YXXXK active site motif (though not the other residues of the SDR tetrad). Members identified include NDUFA9 (mitochondrial) and putative nucleoside-diphosphate-sugar epimerase. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.21095e-13
CP027114.1\|AZZ82996.1\|4314638_4315658_+\|IS481-family-transposase	gnl\|CDD\|366234	pfam00665, rve, Integrase core domain. Integrase mediates integration of a DNA copy of the viral genome into the host chromosome. Integrase is composed of three domains. The amino-terminal domain is a zinc binding domain pfam02022. This domain is the central catalytic domain. The carboxyl terminal domain that is a non-specific DNA binding domain pfam00552. The catalytic domain acts as an endonuclease when two nucleotides are removed from the 3' ends of the blunt-ended viral DNA made by reverse transcription. This domain also catalyzes the DNA strand transfer reaction of the 3' ends of the viral DNA to the 5' ends of the integration site.	1.26496e-25
CP027114.1\|AZZ83861.1\|4313202_4314480_-\|serine-hydroxymethyltransferase	gnl\|CDD\|234571	PRK00011, glyA, serine hydroxymethyltransferase; Reviewed.	0
CP027114.1\|AZZ82985.1\|4298583_4299579_+\|fructose-bisphosphatase-class-II	gnl\|CDD\|236536	PRK09479, glpX, fructose 1,6-bisphosphatase II; Reviewed.	0
CP027114.1\|AZZ83860.1\|4305846_4306494_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	5.55991e-59
CP027114.1\|AZZ82990.1\|4306677_4307553_+\|Usp-family-protein	gnl\|CDD\|366180	pfam00582, Usp, Universal stress protein family. The universal stress protein UspA is a small cytoplasmic bacterial protein whose expression is enhanced when the cell is exposed to stress agents. UspA enhances the rate of cell survival during prolonged exposure to such conditions, and may provide a general "stress endurance" activity. The crystal structure of Haemophilus influenzae UspA reveals an alpha/beta fold similar to that of the Methanococcus jannaschii MJ0577 protein, which binds ATP, though UspA lacks ATP-binding activity.	4.82718e-20
CP027114.1\|AZZ82986.1\|4301402_4302815_+\|aspartate-ammonia-lyase	gnl\|CDD\|234779	PRK00485, fumC, fumarate hydratase; Reviewed.	0
CP027114.1\|AZZ83859.1\|4299697_4301395_+\|fumarate-hydratase	gnl\|CDD\|237955	PRK15389, PRK15389, fumarate hydratase; Provisional.	0
CP027114.1\|AZZ82998.1\|4317024_4317966_+\|type-I-pantothenate-kinase	gnl\|CDD\|235466	PRK05439, PRK05439, pantothenate kinase; Provisional.	0

>CP027114.1|AZZ82992.1|4307891_4308839_-|hypothetical-protein
MRLLGLLVIAVLAACAGGAGQALADPETTTPITPPTTPGSPSLPGMGEGLGIPLLDEVLNQLSGDNGSANAPGGAGGPTGQMIVVTAPKASDTTATLTAFEKGNDGSWKPVPGLGPTKAFLGSLGMGEPQDNVPRTPEGTFPLDQAFGRQENPGTKMPYLKVDTQDWWDSDPKSPTYNTHVRQPQSPGGDSENLYNSGPVYDYAVNIAHNPQRTPGKATAMFLHVTNDQPTLGCVAIERELMKKILVWLDPAKSPKITIGVNQGAPTGEAPGATPQTTPGAAPSTPDVPASDMLTGLLSQLVGAVPALFGQFTGR
>CP027114.1|AZZ82991.1|4307698_4307905_+|hypothetical-protein
MTVISPLFAETEGSADRNCDSCGRSFVLRRPLAEPDRDQWARVNGWHIGVEETFCPACRHARSEISDP
>CP027114.1|AZZ82990.1|4306677_4307553_+|Usp-family-protein
MTASRFTDGPVVVGVDGSATARAAARWAARDAALHRSEIEMIASANLSADDPYVLEPLRARCERALAEARRVAEDSSDSTDPLKITTQVVDSPPVTALLEASDRARLLVVGNRGHMAGHRVALGTITTTLAEHCRCPLTVVRDSTSNWSQASIAVGTDGSPGGRVAVDAAFAAADLRGVPVTVVHAWCDTDVADMSVPCTMSEWPSRRSRADAWLDAELDEVRRRYPQVTVRCAVTRDRPARALLDHAQAAQLLVVGARGRGGFAAMRLGSTSLSVLRSARGPVMVVPRDR
>CP027114.1|AZZ83860.1|4305846_4306494_+|DNA-binding-response-regulator
MFSVFLVDDHEIVRRGLVELLDHDDNVRVVGEAATCAQALARIPTVQPDVAVLDVRLPDGNGIELCRDLLSRVDGLRCLILTSMTDDEAMMDAILAGASGYVIKDITGMELARAITDVGAGRSLLDNRAAAALMDRLRTQREKEEKPGDGLSEQESTLLALLGEGLTNRQIAARMHLAEKTVKNYVSRLLGKLGMERRTQAAVYATKAARRGHAH
>CP027114.1|AZZ82989.1|4303872_4305600_-|histidine-kinase
MVRESRERGVGSSEVQNELSQMRLRELLDEVRDRITQIADVRDRIDGLLEAMLMVSSDLDLETTLEAIVSAGTRLVDAEYGAVGVLGSGHDLSAFLAQGIGEDVRAEIGHLPTGRGVLGQLIDDPRVLRLTDLSEHPASVGFPPNHPPMTSFLGAPIRVRDEIFGNLYLTEKKNGALFTEDDELVIQALASAAGIAIENARLYEQAQTQLAWIEANRDVIAELLTGADQQDVLESIARKVLTLADADLVCIAEPHDHEMPAESVEELVVTVAEGVDAEVFRGRTVPIKGSTSGDAFVRRRPVLREELEYDISGDSSTQHSPVMVAPLRTAESTRGVLIAVRSKGRDGFAEDLLSLSANFADQGALALQLASATNQAHEMRVLEDRERIARDLHDHVIQRIFAEGLTLQATLQRTQSSEIRARLTRSINNLQDIVQDVRSTIFDLQAEETETTRLRQRVQETIDQQIDDLPIQTHVRMAGPLSIVEPRLADQVVAVVREALSNAVRYAHATTVTVAISVGDELAVEVTDDGVGLPEDVTPSGLKNLRHRAKQLGGAFALNTPDSGRGLSVRWAVPL
>CP027114.1|AZZ82988.1|4303664_4303844_+|hypothetical-protein
MTLTGVLVVFLAAFAVCALVGLSIWLIVLFGLLSGVQAVAWVTERTSAWRLPAEPGTGP
>CP027114.1|AZZ82987.1|4302828_4303512_+|PIG-L-family-deacetylase
MTSPEPFPTDWQTALVLVAHPDDPEYGMAAAVARWTGEGKRVVYALASSGERGIEGMTPAECGPLREAEQRASAKIVGVDEVEFWGFPDSDIRNTPELRAKITETVERIAPQVILSLYGGPEWAPGQPNQRDHMEFAAAVLDAYDALSAHSGEVPAWLFENGPAATHAVDVDAQFEVAVRSLAAHDRYLSVLDPDTPVLDQARAQIDRATAPRDDVRVAGFELKRTR
>CP027114.1|AZZ82986.1|4301402_4302815_+|aspartate-ammonia-lyase
MTQAQGKQEFRTEHDTMGEVQVPIDALWRAQTQRAVENFPISHRPLERTQIRAMGLLKAACATVNSDLGLLDAERADAIIAAATEIADGKHDDQFPIDVFQTGSGTSSNMNTNEVIASIAKANGVDVHPNDHVNMSQSSNDTFPTATHVAATEAVVTDLVPALEHLRKSLADKATEWRDVVKSGRTHLMDAVPVTLGQEFAGYARQVEAGIERVTATLPRVGELPIGGTAVGTGLNAPAGFGTKVVAELVRRTGVEELSLAKDNFEAQAARDGLVELSGQLKTIAVSLTKIANDVRWMGSGPLTGLGEILLPDLQPGSSIMPGKVNPVLPEAVTQVAAQVVGNDAAVTWGGGNGAFELNVYIPMMARNVLESLKLLANVSRLFADRCISGLQANVDRLRTLAESSPSIVTPLNSAIGYEEAAAVAKQALKEGKTIRQTVIDRGLVGDKLSEEELDARLDVLKMANLDRER
>CP027114.1|AZZ83859.1|4299697_4301395_+|fumarate-hydratase
MSKPASAPEFLYSDLLPIGADETPYRLITTEGVSTFEAGGQTFLKVEPEAIRKLTAEAMHDISHYLRPAHLAQLRKIIDDPEASGNDRFVALDLLKNVNISAGGVLPMCQDTGTAIVMGKKSEGVLTGTDDAEAISKGVYDAYTQLNLRYSQLAPLTTYEEKNTGTNLPAQVEIYATEQGPKGPEYKFLFMAKGGGSANKSFLFQETKAILNPKSILKFLDEKIRSLGTAACPPYHLAVVIGGTSAEFALKTAKYASAHYLDNLPTQGSMSAHGFRDLELEDEVFTLTQSFGIGAQFGGKYFCHDVRVVRLPRHGASCPVAIAVSCSADRQALGKITADGVFLEQLETDPAKYMPAAGVAEDISGGEVVEVDLNRPMSEILAQLSQYPVKTRLSLTGPLVVARDIAHAKIKERLDAGEPMPDYLRDHPVYYAGPAKTPEGMASGSFGPTTAGRMDSYVEQFQAAGGSMVMLAKGNRSKQVTEACNSHGGFYLGSIGGPAARLALDCIKSQEIIEYPELGMEAVWKIEVENFPAFIVVDDKGNDFFTDPSGSVNVPLSGIRIRSKE
>CP027114.1|AZZ82985.1|4298583_4299579_+|fructose-bisphosphatase-class-II
MTASSHQAPDRNLAMELVRVTESAALAAGRWVGRGDKNGGDGAAVDAMRQLLSTVSMRGVVVIGEGEKDEAPMLYNGEEVGNGEGPDCDVAVDPIDGTTLMAEGRPNSISVIAVSERGTMYDPSAVFYMDKIAVGPDAKGAININESVEWNINSVAKAKGIDVADLTVIVLDRPRHADLIGEIRQAGAKIRLISDGDVAGAVAAADDYSTVDMLMGVGGTPEGIITAVAMKCMGGEIQGKLWPRNDEERQKAIDAGHDLDRVLTNDILVSGENSFFCATGVTNGDMLRGVTYRPNGATTRSLVMRSKSGTVRRIEAVHKPAKLREYARINL
>CP027114.1|AZZ82994.1|4311245_4312265_+|IS481-family-transposase
MSHRNSPLSPTGRLRLARCVVDDRWPLRRAADRFNVSVTTAKRWADRYRDHGPAGMGDRSSRPRSCPHRTSRRRERRVVGLRVSRRWGPARIGYHLGLNVSTVHRILTRYGCLRLSWIDPATGAPVRARRREIRRYEHQAPGDLIHVDIKKLGRIPDGGGHRVHGRAQGTRNSSAHREPGRTRKVAGRPNLGYAYLHHAVDDHSRYAYSEILADEKKETATAFMTRALAHFASIGVTTARVMTDNGSCYRSRIFRDLLDENGIKHKWTRPYRPQTNGKVERFNRTLQEEWAYARPYLSETERVAAFPEFLRIYNHERGHTALRGNSPADRVPNLAGQNI
>CP027114.1|AZZ82995.1|4312261_4313134_-|fatty-acid-desaturase
MNALTEDDLIIALEKALPEIAEDHQSAATPWNPHDWVPWDEGRNFAFLGGDDYDPSQATLSDEARAGLLALLLTKDNLPSYHRVLAKHFPAFSEWRQLIGVWTAEDNRHSIVLRDYLVVRRAIDPVDAENRRLVHVTKGYRQTPEQVDPLGPLDVLALMAVHENQCVSFIKRLSAIAADDVLEQILTKIAADDQQQANTFGAFLNAGIIADQDATVIAIDSALALGRAEAIGHDIDDFDAERALLADYENEDTWREIAATLADAVKLDSIEGLGDEAEAARQRILSRARG
>CP027114.1|AZZ83861.1|4313202_4314480_-|serine-hydroxymethyltransferase
MSLAELDPDVAAAMNGELSRQRDTLEMIASENFVPRAVLQAQGSVLTNKYAEGYPGRRYYGGCEYVDVVEDIARNRAKELFGADFANVQPHSGAQANAAVLQALMEPGETMLGLDLAHGGHLTHGMRLNFSGKLYENAFYGVSKEDFRIDMDEVRKIALDVKPKVIVAGWSAYPRTLDFEAFRSIADEVGAHLWVDMAHFAGLVAAGLHPSPVPHADVVSSTVHKTLGGPRSGIILAKQEWAKKLNSAVFPGQQGGPLMHAIAGKAVALKIAGTEEFAERQRRTMSGASILAERLNGEDVAKAGVSVLTGGTDVHLVLVDLRNSDLDGQQAEDLLHQVGITVNRNAVPFDPRPPMVTSGLRIGTPALATRGFGDEEFTEVADIIATALAAGSSADVSALRGRVSKLALDFPLYEGLEEWGLMSRI
>CP027114.1|AZZ82996.1|4314638_4315658_+|IS481-family-transposase
MSHRNSPLSPTGRLRLARCVVDDRWPLRRAADRFNVSVTTAKRWADRYRDHGPAGMGDRSSRPRSCPHRTSRRRERRVVGLRVSRRWGPARIGYHLGLNVSTVHRILTRYGCLRLSWIDPATGAPVRARRREIRRYEHQAPGDLIHVDIKKLGRIPDGGGHRVHGRAQGTRNSSAHREPGRTRKVAGRPNLGYAYLHHAVDDHSRYAYSEILADEKKETATAFMTRALAHFASIGVTTARVMTDNGSCYRSRIFRDLLHENGIKHKWTRPYRPQTNGKVERFNRTLQEEWAYARPYLSETERVAAFPEFLRIYNHERGHTALRGNSPADRVPNLSGQYI
>CP027114.1|AZZ82997.1|4315677_4316898_-|DUF885-domain-containing-protein
MPADHATPDLVTDYLRLGLAFDRLEEGFVDAFTGDPALRAEIANGPAPDPAHLAAQARALRADLPGDLPADRAEFIGSHLRALECSARKFAGDDISFVDEVNAYFDVDIALADPDRYRQAHTELADALGIADASGEDLRDAYAAHRRADEIPADKVDECVRAFSGALRERVRAQYPLPDNEIVDFEVVTDKPWSGFNYYLGDYWSRVAINADLTQYMSSLPHLIAHEAYPGHHTEHCRKEQLLVGAGQHEQSIFLVNTPQCLMAEGLADHALTAIMGKEWGGWAQEIYADLGLRFDADRATRVGRATSGLLTVRQDAALMLHDQHADADTVADFLQTWLLAPPERARQMLRFLTSPLWRAYISTYVEGYRLLESWLDAADDRAAAFGRLLDEPLIPASLRRELVAG
>CP027114.1|AZZ82998.1|4317024_4317966_+|type-I-pantothenate-kinase
MARNASDRDPSLYLELDRRQWRELRESMPLVLNEDELAELVGLGEQIDLEEVADVYLPLSRLIHLQVAARQRLFAATSTFLGERQVNRQVPFVIGIAGSVAVGKSTTARVLAALLARWESHPKVDLITTDGFLLPTAEMQRRGILHRKGFPESYDRRALLRFVTEVKSGAREVAAPVYSHLAYDIVPSVYHYVRQPDILILEGLNVLQTGPTLMVSDLFDFSIYVDAKIEDIEEWYISRFLQMRTTSFANPDSHFHAYASLTDEQATAAARDLWTSINRPNLIENILPTRPRASLVLRKDVDHAINRVRLRKL
>CP027114.1|AZZ82999.1|4317986_4318559_-|TetR/AcrR-family-transcriptional-regulator
MGRAQEGGGGHLSADDWIELGYAILAEDGFKQIKIDTVCKRMGVTKGSFYWHFKDIAAYRSALVARWGEWNDEEHQNFAALADLPPRDRLLGLIAQLTSPRHWMIERAMREWARSDPNAEASIRTSDRRAREAVRRCLLDHGMDPKTASVRSNWIFAMGIGALHLSYSEEDRASAGRHSAELVDLMLTPT
>CP027114.1|AZZ83000.1|4318630_4319794_+|acyl-CoA-dehydrogenase
MDTPTSGTVLITDEFIASLAERAGRAEELRQLPAETIRDATDSGLLDLLIPSRFGGLEAPFPEILDHVRRLAHGCTSSAWTLGFYTLHGWITALFSEAAQEEAFADRPYLAPAPLAPTGTAEPRDGGFSVSGRWSWATGIMEANWVMVGAIVTGDRPDAVLALLPIDDARVEDVWHTDGMRATGSNDVVVENAFVPAHRTVRVRDLYAGRTPGATLHDNYSYRWPMVPALALLAAMPALGTAERVADLYAARLSERVLAYQMVKQKDKPAARIRLGDARIRLQALRGLLAQTTATIDEILAAGGTVDIRTRAQARLAAARIVNESRAVIGTLLEASGASVHFLDHPMQRARRDVDVLSGHVVFDYDEIREIAASLEIGMEISPFAMV
>CP027114.1|AZZ83001.1|4319884_4320343_-|carboxymuconolactone-decarboxylase-family-protein
MWIPQDNPAVYKALVALQRASSAGVDVEIGELISMRVSQLNGCAYCLHMHAGDALAAQIDPHKLLMLATWREAGSLFSSRERAVLALAEQLTRLGEGGVDDAVFDDVRTCFDAATTGQLVAAIVMINAWNRIAVAGGYPAGLDERRVSQAAG
>CP027114.1|AZZ83002.1|4320369_4321164_-|NmrA-family-transcriptional-regulator
MKIVVIGASGVLGSRVADLLAERGNEVVRANRGAGVDAYTGEGLARAMSGADVVVDCLSVETLSAKKAVDFFRTTARNIGRAATAAAVGHVVCVSIVNADDPTVNAKFGYYQGKAAQEAAYRDVVDPATLTILASVQWFELAEQMMGRMAVGPVAIVPKMRCRPAAAEDVAKVVADTATAGPVTADAGGVRKIEVAGPAEMNLVDVAKAVAAQRGSPRWIIGAAVGGSAIRGGGLVPANPDVITPTTLEQWLAQRSGAHAGSAR

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP027114_2	2.1\|1748402\|34\|CP027114\|CRISPRCasFinder	1748402-1748435	34	CP027114.1	1748548-1748581	0	1.0

1. spacer 2.1|1748402|34|CP027114|CRISPRCasFinder matches to position: 1748548-1748581, mismatch: 0, identity: 1.0

acgagccacgaaggcctggtgagacgacgtcgca	CRISPR spacer
acgagccacgaaggcctggtgagacgacgtcgca	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP027114_2	2.2\|1748479\|26\|CP027114\|CRISPRCasFinder	1748479-1748504	26	NZ_CP024310	Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence	984521-984546	3	0.885
CP027114_2	2.2\|1748479\|26\|CP027114\|CRISPRCasFinder	1748479-1748504	26	NZ_CP013054	Sinorhizobium americanum CCGM7 plasmid C, complete sequence	1305700-1305725	3	0.885
CP027114_2	2.2\|1748479\|26\|CP027114\|CRISPRCasFinder	1748479-1748504	26	NZ_CP023064	Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence	802979-803004	3	0.885
CP027114_2	2.2\|1748479\|26\|CP027114\|CRISPRCasFinder	1748479-1748504	26	NZ_CP013110	Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence	1084565-1084590	3	0.885
CP027114_2	2.2\|1748479\|26\|CP027114\|CRISPRCasFinder	1748479-1748504	26	NZ_CP042268	Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence	64161-64186	4	0.846
CP027114_2	2.2\|1748479\|26\|CP027114\|CRISPRCasFinder	1748479-1748504	26	NZ_CP017759	Cupriavidus necator strain NH9 plasmid pENH92, complete sequence	367489-367514	5	0.808
CP027114_2	2.2\|1748479\|26\|CP027114\|CRISPRCasFinder	1748479-1748504	26	NC_023498	Mycobacterium phage Validus, complete genome	25753-25778	6	0.769

1. spacer 2.2|1748479|26|CP027114|CRISPRCasFinder matches to NZ_CP024310 (Sinorhizobium fredii strain NXT3 plasmid pSfreNXT3c, complete sequence) position: , mismatch: 3, identity: 0.885

tcgtgctgcgtgatccgaaagggcgc	CRISPR spacer
ccgtgctgcgggatccgaaaggccgc	Protospacer
.********* *********** ***

2. spacer 2.2|1748479|26|CP027114|CRISPRCasFinder matches to NZ_CP013054 (Sinorhizobium americanum CCGM7 plasmid C, complete sequence) position: , mismatch: 3, identity: 0.885

tcgtgctgcgtgatccgaaagggcgc	CRISPR spacer
ccgtgctgcgggatccgaaaggccgc	Protospacer
.********* *********** ***

3. spacer 2.2|1748479|26|CP027114|CRISPRCasFinder matches to NZ_CP023064 (Sinorhizobium sp. CCBAU 05631 plasmid pSS05631b, complete sequence) position: , mismatch: 3, identity: 0.885

tcgtgctgcgtgatccgaaagggcgc	CRISPR spacer
ccgtgctgcgggatccgaaaggccgc	Protospacer
.********* *********** ***

4. spacer 2.2|1748479|26|CP027114|CRISPRCasFinder matches to NZ_CP013110 (Sinorhizobium americanum strain CFNEI 73 plasmid C, complete sequence) position: , mismatch: 3, identity: 0.885

tcgtgctgcgtgatccgaaagggcgc	CRISPR spacer
ccgtgctgcgggatccgaaaggccgc	Protospacer
.********* *********** ***

5. spacer 2.2|1748479|26|CP027114|CRISPRCasFinder matches to NZ_CP042268 (Pseudomonas aeruginosa strain HOU1 plasmid pHOU1-1, complete sequence) position: , mismatch: 4, identity: 0.846

tcgtgctgcgtgatccgaaagggcgc	CRISPR spacer
gcgtgctgcgcgatccgcaagggcgg	Protospacer
 *********.****** *******

6. spacer 2.2|1748479|26|CP027114|CRISPRCasFinder matches to NZ_CP017759 (Cupriavidus necator strain NH9 plasmid pENH92, complete sequence) position: , mismatch: 5, identity: 0.808

tcgtgctgcgtgatccgaaagggcgc	CRISPR spacer
gcgtcctgcgagatccgaaagggctt	Protospacer
 *** ***** ************* .

7. spacer 2.2|1748479|26|CP027114|CRISPRCasFinder matches to NC_023498 (Mycobacterium phage Validus, complete genome) position: , mismatch: 6, identity: 0.769

tcgtgctgcgtgatccgaaagggcgc	CRISPR spacer
gatgactgcgtgatccgcaagggcgc	Protospacer
    .************ ********

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

2453788 : 2462921

Gordonia_phage(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZZ81541.1\|2453788_2454346_+	FMN reductase	A0A2P0ZL77	Lactobacillus_phage	2.6e-08	29.8
AZZ81542.1\|2454760_2454997_+	NrdH-redoxin	V5UN81	Mycobacterium_phage	5.1e-22	62.8
AZZ83687.1\|2455223_2455688_+	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	Q4Z9B0	Staphylococcus_phage	8.0e-11	31.7
AZZ81543.1\|2455787_2457983_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	V9VI16	Lactococcus_phage	1.4e-209	51.6
AZZ81544.1\|2458051_2459056_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A160DHK0	Gordonia_phage	2.0e-155	86.5
AZZ81545.1\|2459103_2459913_-	hypothetical protein	NA	NA	NA	NA
AZZ81546.1\|2459909_2462921_-	ATP-dependent helicase	A0A2K9VEG9	Gordonia_phage	8.3e-40	28.2

DBSCAN-SWA_2

4473239 : 4540473

Bacillus_phage(33.33%)

tRNA,transposase,holin,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZZ83122.1\|4473239_4474832_+\|tRNA	methionine--tRNA ligase	A0A1V0SHR2	Klosneuvirus	9.3e-99	38.4
AZZ83123.1\|4474847_4475996_+	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	2.3e-35	40.1
AZZ83124.1\|4476058_4477306_+	transcriptional regulator	NA	NA	NA	NA
AZZ83125.1\|4477229_4478129_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	3.0e-38	37.0
AZZ83126.1\|4478167_4479751_+	dolichyl-phosphate-mannose--protein mannosyltransferase	NA	NA	NA	NA
AZZ83127.1\|4479782_4481471_-\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	9.4e-25	29.5
AZZ83128.1\|4481590_4481968_-	GntR family transcriptional regulator	NA	NA	NA	NA
AZZ83129.1\|4481977_4483246_-	arginine deiminase	NA	NA	NA	NA
AZZ83130.1\|4483249_4484485_-	MFS transporter	NA	NA	NA	NA
AZZ83131.1\|4484481_4485501_-	esterase	A0A1V0SCG0	Catovirus	1.4e-07	29.9
AZZ83132.1\|4485550_4485997_-	redox-sensitive transcriptional activator SoxR	NA	NA	NA	NA
AZZ83882.1\|4486022_4486886_-	universal stress protein	NA	NA	NA	NA
AZZ83883.1\|4487041_4487356_+	hypothetical protein	NA	NA	NA	NA
AZZ83133.1\|4487407_4488898_+	serine/threonine protein kinase	NA	NA	NA	NA
AZZ83134.1\|4488923_4489736_-	tyrosine protein kinase	NA	NA	NA	NA
AZZ83135.1\|4489737_4491858_-	cation/H(+) antiporter	NA	NA	NA	NA
AZZ83136.1\|4491875_4493279_-\|head	forkhead-associated protein	NA	NA	NA	NA
AZZ83137.1\|4493275_4493725_-	hypothetical protein	NA	NA	NA	NA
AZZ83138.1\|4493724_4495320_-	hypothetical protein	NA	NA	NA	NA
AZZ83139.1\|4495747_4496791_+	diiron oxygenase	NA	NA	NA	NA
AZZ83140.1\|4496839_4498438_+	4Fe-4S ferredoxin	NA	NA	NA	NA
AZZ83141.1\|4498358_4498832_+	hypothetical protein	NA	NA	NA	NA
AZZ83142.1\|4498828_4499779_+	EamA family transporter	NA	NA	NA	NA
AZZ83143.1\|4499935_4500742_+	maleylpyruvate isomerase family mycothiol-dependent enzyme	NA	NA	NA	NA
AZZ83144.1\|4500743_4502393_-	RNA helicase	A0A1B1IS59	uncultured_Mediterranean_phage	1.4e-33	27.4
AZZ83145.1\|4502703_4503267_-	XRE family transcriptional regulator	NA	NA	NA	NA
AZZ83146.1\|4503324_4504053_+	branched-chain amino acid permease	NA	NA	NA	NA
AZZ83147.1\|4504049_4504373_+	branched-chain amino acid transporter	NA	NA	NA	NA
AZZ83148.1\|4504460_4505732_-	glycoside hydrolase family 1	NA	NA	NA	NA
AZZ83149.1\|4505791_4506739_-	lipase	NA	NA	NA	NA
AZZ83150.1\|4506898_4507258_+	steroid delta-isomerase	NA	NA	NA	NA
AZZ83151.1\|4510002_4510428_-\|transposase	transposase	NA	NA	NA	NA
AZZ83152.1\|4510803_4511553_+	hypothetical protein	NA	NA	NA	NA
AZZ83153.1\|4511628_4512825_-	hypothetical protein	NA	NA	NA	NA
AZZ83154.1\|4513394_4514051_-	N-acetyltransferase	NA	NA	NA	NA
AZZ83155.1\|4514089_4515394_-	molybdopterin molybdenumtransferase MoeA	NA	NA	NA	NA
AZZ83156.1\|4515487_4516429_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	4.4e-48	40.8
AZZ83157.1\|4516545_4517142_+	5-formyltetrahydrofolate cyclo-ligase	NA	NA	NA	NA
AZZ83158.1\|4517231_4517549_-	FmdB family transcriptional regulator	NA	NA	NA	NA
AZZ83159.1\|4517788_4519360_+	alanine:cation symporter family protein	NA	NA	NA	NA
AZZ83884.1\|4519485_4520577_+\|transposase	IS110 family transposase	NA	NA	NA	NA
AZZ83160.1\|4520980_4522000_+\|transposase	IS481 family transposase	NA	NA	NA	NA
AZZ83161.1\|4522021_4523248_-	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	4.1e-54	39.2
AZZ83162.1\|4523486_4524143_+	flagellar biosynthesis protein FlgA	NA	NA	NA	NA
AZZ83163.1\|4524318_4525173_+	large conductance mechanosensitive channel protein MscL	NA	NA	NA	NA
AZZ83164.1\|4525534_4527265_-	ABC transporter ATP-binding protein	W8CYL7	Bacillus_phage	1.8e-31	26.6
AZZ83165.1\|4527453_4528116_-	hypothetical protein	NA	NA	NA	NA
AZZ83166.1\|4528186_4528840_-	hypothetical protein	NA	NA	NA	NA
AZZ83167.1\|4529532_4530201_-	molybdenum cofactor biosynthesis protein	NA	NA	NA	NA
AZZ83168.1\|4530288_4531893_-	peptidase S1	NA	NA	NA	NA
AZZ83169.1\|4531905_4533402_-	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	1.4e-16	25.6
AZZ83170.1\|4533401_4534088_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.8e-38	40.1
AZZ83885.1\|4534343_4538426_+	reductase	NA	NA	NA	NA
AZZ83171.1\|4538961_4540473_+\|transposase	IS21 family transposase	A0A2L1IVA1	Escherichia_phage	8.7e-14	26.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP027115

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

0 : 6682

Flavobacterium_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZZ83935.1\|514_2305_+	cytochrome c oxidase subunit I	R9VX24	Flavobacterium_phage	1.6e-11	37.5
AZZ83936.1\|2301_2577_+	hypothetical protein	NA	NA	NA	NA
AZZ83937.1\|2961_3894_-	peptidase M48	NA	NA	NA	NA
AZZ83938.1\|3898_4270_-	BlaI/MecI/CopY family transcriptional regulator	NA	NA	NA	NA
AZZ83939.1\|4432_6682_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.9e-74	32.1

DBSCAN-SWA_2

11079 : 13483

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZZ83943.1\|11079_11358_+	hypothetical protein	A0A249XTC5	Mycobacterium_phage	3.0e-05	45.8
AZZ83944.1\|11457_13038_+	nuclease	S5YZ97	Mycobacterium_phage	6.2e-47	34.4
AZZ83945.1\|13123_13483_+	hypothetical protein	A0A2P1CGB9	Mycobacterium_phage	2.6e-17	42.2

DBSCAN-SWA_3

22982 : 27254

Leptospira_phage(50.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZZ83953.1\|22982_24127_-\|transposase	IS3 family transposase	S5WIU1	Leptospira_phage	4.7e-36	33.1
AZZ83954.1\|24172_24769_-	hypothetical protein	NA	NA	NA	NA
AZZ83955.1\|24957_26469_+\|transposase	IS21 family transposase	NA	NA	NA	NA
AZZ83956.1\|26465_27254_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.7e-33	35.3

DBSCAN-SWA_4

33160 : 34072

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZZ83962.1\|33160_34072_+	hypothetical protein	A0A0K1LIW8	Mycobacterium_phage	1.9e-08	41.9

DBSCAN-SWA_5

40377 : 41115

Mycobacterium_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZZ83969.1\|40377_41115_+	peptidase M23	A0A1D8EVX2	Mycobacterium_phage	8.0e-21	47.6

DBSCAN-SWA_6

48275 : 50877

Streptococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
AZZ83976.1\|48275_48692_+	transcriptional regulator	E4ZFI8	Streptococcus_phage	3.9e-09	37.5
AZZ83989.1\|48684_50877_+	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.7e-104	38.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP027114

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP027115

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection