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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP034834 Pseudoalteromonas sp. R3 chromosome 2, complete sequence 0 crisprs WYL,DEDDh,csa3,cas3,DinG 0 0 0 0
CP034835 Pseudoalteromonas sp. R3 chromosome 1, complete sequence 17 crisprs DEDDh,cas10,csm3gr7,csx10gr5,cas6,csx1,csx16,DinG,cas3,csa3 1 10 7 0

Results visualization

1. CP034835
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_1 40850-40931 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_2 89945-90044 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_3 947455-947540 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_4 1304501-1304729 TypeIII NA
3 spacers
cas6,csm3gr7,csx10gr5,cas10,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_5 1305578-1306030 TypeIII NA
6 spacers
cas6,csm3gr7,csx10gr5,cas10,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_6 1306201-1306299 TypeIII NA
1 spacers
cas6,csm3gr7,csx10gr5,cas10,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_7 1307200-1307440 TypeIII NA
3 spacers
cas6,csm3gr7,csx10gr5,cas10,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_8 1308404-1308762 TypeIII NA
5 spacers
cas6,csm3gr7,csx10gr5,cas10,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_9 1310677-1310896 TypeIII NA
3 spacers
cas6,csm3gr7,csx10gr5,cas10,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_10 1313707-1313871 TypeIII NA
2 spacers
cas6,csm3gr7,csx10gr5,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_11 1313906-1314081 TypeIII NA
2 spacers
cas6,csm3gr7,csx10gr5,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_12 1315095-1315750 TypeIII-A,TypeIII-D? NA
9 spacers
cas6,csm3gr7,csx10gr5,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_15 1316683-1316786 TypeIII-D,TypeIII-A? NA
1 spacers
cas6,csm3gr7,csx10gr5,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_16 1316990-1317093 TypeIII-D,TypeIII-A? NA
1 spacers
cas6,csm3gr7,csx10gr5,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_13 1316077-1316181 TypeIII-A,TypeIII-D? NA
1 spacers
cas6,csm3gr7,csx10gr5,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_14 1316341-1316585 TypeIII-A,TypeIII-D? NA
3 spacers
cas6,csm3gr7,csx10gr5,csx1,csx16

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP034835_17 3447359-3447467 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP034835_17 17.1|3447386|55|CP034835|CRISPRCasFinder 3447386-3447440 55 CP034835.1 3447175-3447229 2 0.964

1. spacer 17.1|3447386|55|CP034835|CRISPRCasFinder matches to position: 3447175-3447229, mismatch: 2, identity: 0.964

cgggacgtactttgtggagagtgaacctccgacttcctgaatccgattcttctta	CRISPR spacer
cgggacgtactttatggagagtgaacctccgacttcctgaatccgattcttttta	Protospacer
*************.*************************************.***

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP034835_1 1.1|40878|26|CP034835|CRISPRCasFinder 40878-40903 26 NZ_CP054661 Lactobacillus reuteri strain AN417 plasmid pAN417D, complete sequence 3875-3900 4 0.846
CP034835_1 1.1|40878|26|CP034835|CRISPRCasFinder 40878-40903 26 NZ_LN906636 Lactobacillus reuteri plasmid p53608_2, complete genome, strain ATCC 53608 4432-4457 4 0.846
CP034835_1 1.1|40878|26|CP034835|CRISPRCasFinder 40878-40903 26 LT605060 Acinetobacter calcoaceticus strain NCTC7364 genome assembly, plasmid: 2 41018-41043 4 0.846
CP034835_1 1.1|40878|26|CP034835|CRISPRCasFinder 40878-40903 26 NZ_CP012005 Acinetobacter baumannii strain ATCC 17978-mff plasmid pAB3, complete sequence 56447-56472 4 0.846
CP034835_1 1.1|40878|26|CP034835|CRISPRCasFinder 40878-40903 26 CP033562 Acinetobacter nosocomialis strain 2010S01-197 plasmid p2010S01-197-1, complete sequence 55669-55694 4 0.846
CP034835_1 1.1|40878|26|CP034835|CRISPRCasFinder 40878-40903 26 JN638751 Bacillus phage G, complete genome 185960-185985 5 0.808
CP034835_1 1.1|40878|26|CP034835|CRISPRCasFinder 40878-40903 26 NZ_LR135244 Enterococcus faecium isolate E6988 plasmid 2 54501-54526 7 0.731
CP034835_1 1.1|40878|26|CP034835|CRISPRCasFinder 40878-40903 26 NZ_CP025687 Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence 8416-8441 7 0.731
CP034835_1 1.1|40878|26|CP034835|CRISPRCasFinder 40878-40903 26 NZ_CP040877 Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence 150934-150959 7 0.731
CP034835_5 5.3|1305746|31|CP034835|PILER-CR,CRT 1305746-1305776 31 CP033569 Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence 168181-168211 7 0.774
CP034835_5 5.3|1305746|31|CP034835|PILER-CR,CRT 1305746-1305776 31 NZ_KX426227 Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence 155655-155685 7 0.774
CP034835_5 5.3|1305746|31|CP034835|PILER-CR,CRT 1305746-1305776 31 NZ_CP038010 Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence 241825-241855 7 0.774
CP034835_5 5.10|1305811|31|CP034835|CRT 1305811-1305841 31 NC_016658 Cyanophage NATL1A-7, complete genome 21384-21414 8 0.742
CP034835_5 5.11|1305876|31|CP034835|CRT 1305876-1305906 31 MK765637 Tortoise microvirus 84 isolate 84_SP_83, complete genome 3305-3335 9 0.71
CP034835_3 3.1|947478|40|CP034835|CRISPRCasFinder 947478-947517 40 AP014279 Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C67, *** SEQUENCING IN PROGRESS *** 4503-4542 10 0.75
CP034835_3 3.1|947478|40|CP034835|CRISPRCasFinder 947478-947517 40 MH540083 Synechococcus T7-like virus S-TIP37, complete genome 4921-4960 10 0.75
CP034835_3 3.1|947478|40|CP034835|CRISPRCasFinder 947478-947517 40 KC310802 Synechococcus phage S-CBP1, complete genome 4084-4123 10 0.75
CP034835_4 4.2|1304600|32|CP034835|PILER-CR,CRT 1304600-1304631 32 MN693632 Marine virus AFVG_250M242, complete genome 22882-22913 10 0.688
CP034835_4 4.3|1304665|32|CP034835|PILER-CR,CRT 1304665-1304696 32 MN694079 Marine virus AFVG_250M40, complete genome 6304-6335 10 0.688
CP034835_4 4.6|1304664|33|CP034835|CRISPRCasFinder 1304664-1304696 33 MN694079 Marine virus AFVG_250M40, complete genome 6303-6335 11 0.667
CP034835_13 13.1|1316112|34|CP034835|CRISPRCasFinder 1316112-1316145 34 NZ_CP015167 Acetobacter ascendens strain LMG 1590 plasmid unnamed3, complete sequence 37082-37115 11 0.676
CP034835_14 14.4|1316377|34|CP034835|CRISPRCasFinder 1316377-1316410 34 NZ_CP023068 Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence 1670722-1670755 11 0.676

1. spacer 1.1|40878|26|CP034835|CRISPRCasFinder matches to NZ_CP054661 (Lactobacillus reuteri strain AN417 plasmid pAN417D, complete sequence) position: , mismatch: 4, identity: 0.846

accattttgaataattaactggtcac	CRISPR spacer
accattttgaacaagtaactggtcgt	Protospacer
***********.** *********..

2. spacer 1.1|40878|26|CP034835|CRISPRCasFinder matches to NZ_LN906636 (Lactobacillus reuteri plasmid p53608_2, complete genome, strain ATCC 53608) position: , mismatch: 4, identity: 0.846

accattttgaataattaactggtcac	CRISPR spacer
accattttgaacaagtaactggtcgt	Protospacer
***********.** *********..

3. spacer 1.1|40878|26|CP034835|CRISPRCasFinder matches to LT605060 (Acinetobacter calcoaceticus strain NCTC7364 genome assembly, plasmid: 2) position: , mismatch: 4, identity: 0.846

accattttgaataattaactggtcac	CRISPR spacer
accattttgaacaattgactggttaa	Protospacer
***********.****.******.* 

4. spacer 1.1|40878|26|CP034835|CRISPRCasFinder matches to NZ_CP012005 (Acinetobacter baumannii strain ATCC 17978-mff plasmid pAB3, complete sequence) position: , mismatch: 4, identity: 0.846

accattttgaataattaactggtcac	CRISPR spacer
accattttgaacaattgactggttaa	Protospacer
***********.****.******.* 

5. spacer 1.1|40878|26|CP034835|CRISPRCasFinder matches to CP033562 (Acinetobacter nosocomialis strain 2010S01-197 plasmid p2010S01-197-1, complete sequence) position: , mismatch: 4, identity: 0.846

accattttgaataattaactggtcac	CRISPR spacer
accattttgaacaattgactggttaa	Protospacer
***********.****.******.* 

6. spacer 1.1|40878|26|CP034835|CRISPRCasFinder matches to JN638751 (Bacillus phage G, complete genome) position: , mismatch: 5, identity: 0.808

accattttgaataattaactggtcac	CRISPR spacer
tagatattgaattattaactggtcac	Protospacer
   ** ****** *************

7. spacer 1.1|40878|26|CP034835|CRISPRCasFinder matches to NZ_LR135244 (Enterococcus faecium isolate E6988 plasmid 2) position: , mismatch: 7, identity: 0.731

accattttgaataattaactggtcac	CRISPR spacer
ctacttttgaataattaactggtgtt	Protospacer
 .  *******************  .

8. spacer 1.1|40878|26|CP034835|CRISPRCasFinder matches to NZ_CP025687 (Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence) position: , mismatch: 7, identity: 0.731

accattttgaataattaactggtcac	CRISPR spacer
ctacttttgaataattaactggtgtt	Protospacer
 .  *******************  .

9. spacer 1.1|40878|26|CP034835|CRISPRCasFinder matches to NZ_CP040877 (Enterococcus faecium strain HB-1 plasmid punnamed, complete sequence) position: , mismatch: 7, identity: 0.731

accattttgaataattaactggtcac	CRISPR spacer
ctacttttgaataattaactggtgtt	Protospacer
 .  *******************  .

10. spacer 5.3|1305746|31|CP034835|PILER-CR,CRT matches to CP033569 (Acinetobacter pittii strain 2014N21-145 plasmid p2014N21-145-1, complete sequence) position: , mismatch: 7, identity: 0.774

ctcgttcaaaccagtgtgttgtgtaaatacg	CRISPR spacer
cgcaatcaaaccagtgtgttctgttaatttg	Protospacer
* *. *************** *** *** .*

11. spacer 5.3|1305746|31|CP034835|PILER-CR,CRT matches to NZ_KX426227 (Acinetobacter lwoffii strain ED23-35 plasmid pALWED1.1, complete sequence) position: , mismatch: 7, identity: 0.774

ctcgttcaaaccagtgtgttgtgtaaatacg	CRISPR spacer
cgcaatcaaaccagtgtgttctgttaatttg	Protospacer
* *. *************** *** *** .*

12. spacer 5.3|1305746|31|CP034835|PILER-CR,CRT matches to NZ_CP038010 (Acinetobacter haemolyticus strain TJR01 plasmid pAHTJR1, complete sequence) position: , mismatch: 7, identity: 0.774

ctcgttcaaaccagtgtgttgtgtaaatacg	CRISPR spacer
cgcaatcaaaccagtgtgttctgttaatttg	Protospacer
* *. *************** *** *** .*

13. spacer 5.10|1305811|31|CP034835|CRT matches to NC_016658 (Cyanophage NATL1A-7, complete genome) position: , mismatch: 8, identity: 0.742

cgtccctaaaccaatctgattcgacgtatac	CRISPR spacer
gctcttgaaaccaatctgattccacgaatat	Protospacer
  **.. *************** *** ***.

14. spacer 5.11|1305876|31|CP034835|CRT matches to MK765637 (Tortoise microvirus 84 isolate 84_SP_83, complete genome) position: , mismatch: 9, identity: 0.71

ccccatgaacgcgataaccagcgccataccg	CRISPR spacer
gtcaatgaacgcgattaccagcgccaattga	Protospacer
 .* *********** **********  . .

15. spacer 3.1|947478|40|CP034835|CRISPRCasFinder matches to AP014279 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C67, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.75

cgtctaccaattccgccacttccgcatg----ttttttcgcttt	CRISPR spacer
cgtctaccaattccgccacatccgcgtggggattccagcg----	Protospacer
******************* *****.**    **..  **    

16. spacer 3.1|947478|40|CP034835|CRISPRCasFinder matches to MH540083 (Synechococcus T7-like virus S-TIP37, complete genome) position: , mismatch: 10, identity: 0.75

cgtctaccaattccgccacttccgcatg----ttttttcgcttt	CRISPR spacer
cgtctaccaattccgccacatccgcgtggggattccagcg----	Protospacer
******************* *****.**    **..  **    

17. spacer 3.1|947478|40|CP034835|CRISPRCasFinder matches to KC310802 (Synechococcus phage S-CBP1, complete genome) position: , mismatch: 10, identity: 0.75

cgtctaccaattccgccacttccgcatg----ttttttcgcttt	CRISPR spacer
cgtctaccaattccgccacatccgcgtggggattccagcg----	Protospacer
******************* *****.**    **..  **    

18. spacer 4.2|1304600|32|CP034835|PILER-CR,CRT matches to MN693632 (Marine virus AFVG_250M242, complete genome) position: , mismatch: 10, identity: 0.688

agttcagttgctataggtcaaaaagaattgcc	CRISPR spacer
gaatcatttgctataggtcataaagaggttgt	Protospacer
.. *** ************* *****. *  .

19. spacer 4.3|1304665|32|CP034835|PILER-CR,CRT matches to MN694079 (Marine virus AFVG_250M40, complete genome) position: , mismatch: 10, identity: 0.688

caccgctggaactaaaacaggtggggtatgtt	CRISPR spacer
agatgctgcaactaaaacagttggggtagcaa	Protospacer
 . .**** *********** *******    

20. spacer 4.6|1304664|33|CP034835|CRISPRCasFinder matches to MN694079 (Marine virus AFVG_250M40, complete genome) position: , mismatch: 11, identity: 0.667

acaccgctggaactaaaacaggtggggtatgtt	CRISPR spacer
gagatgctgcaactaaaacagttggggtagcaa	Protospacer
. . .**** *********** *******    

21. spacer 13.1|1316112|34|CP034835|CRISPRCasFinder matches to NZ_CP015167 (Acetobacter ascendens strain LMG 1590 plasmid unnamed3, complete sequence) position: , mismatch: 11, identity: 0.676

ttatcggtaggtttctccggggcgggacttcttt	CRISPR spacer
caatcgggaggtttctccgcggcgggttgcgatc	Protospacer
. ***** *********** ****** . .  *.

22. spacer 14.4|1316377|34|CP034835|CRISPRCasFinder matches to NZ_CP023068 (Ensifer sojae CCBAU 05684 plasmid pSJ05684b, complete sequence) position: , mismatch: 11, identity: 0.676

aaccaagcgtggcccatttcatgataagctgttt	CRISPR spacer
acgagagcgtggcccatttcgtgataggcgacca	Protospacer
*   .***************.*****.** ... 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 391602 : 448024 51 uncultured_Mediterranean_phage(20.0%) protease NA
DBSCAN-SWA_2 887881 : 914382 15 Staphylococcus_prophage(100.0%) tRNA,transposase,tail NA
DBSCAN-SWA_3 1879349 : 1982392 86 uncultured_Caudovirales_phage(21.88%) head,plate,tail,capsid,transposase,holin,tRNA,terminase,portal,protease NA
DBSCAN-SWA_4 2268384 : 2281579 11 Burkholderia_phage(22.22%) head NA
DBSCAN-SWA_5 2835386 : 2890668 52 Vibrio_phage(21.43%) head,tail,capsid,tRNA,portal,protease NA
DBSCAN-SWA_6 2893713 : 2901708 13 uncultured_Mediterranean_phage(25.0%) NA NA
DBSCAN-SWA_7 3291463 : 3320305 34 Wolbachia_phage(35.29%) plate,tail NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage