CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025689	Sporolactobacillus terrae strain DRG1 chromosome, complete genome	3 crisprs	csa3,RT,cas14j,cas6,cas8b2,cas7,cas5,cas3,cas4,cas1,cas2,DEDDh	1	4	4	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025689_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025689_1

892660-895256

Unclear

Consensus_repeat	Method
GTTTTAATCTACGTATCATGAAATGTAAAT	PILER-CR
GTTTTAATCTACGTATCATGAAATGTAAAT	CRISPRCasFinder
GTTTTAATCTACGTATCATGAAATGTAAAT	CRT

39 spacers

cas2,cas1,cas4,cas3,cas5,cas7,cas8b2,cas6

The CRISPR arrays of CP025689_1

>merge|CP025689|1|892660-895256|PILER-CR,CRISPRCasFinder,CRT
GTTTTAATCTACGTATCATGAAATGTAAATTGTGACAACCCTTTAATACCAAGCGATTCGCAAATAGTTTTAATCTACGTATCATGAAATGTAAATTCCGGGGTAACGCCAACGGCACGTTGCACGCGCTGCGTTTTAATCTACGTATCATGAAATGTAAATTTGCTCATCATCGCACTCAACCATGTCCCCTTGTGGTTTTAATCTACGTATCATGAAATGTAAATGCTGCAGACAGATAATAGACATTCTCACCATCCCGAGTTTTAATCTACGTATCATGAAATGTAAATACAGCTATCACGTCTGCATTATCTCTACGGCCGCCGTTTTAATCTACGTATCATGAAATGTAAATATAATAAAGCATTACATTTACTTGTATGATCTTCTTCGTTTTAATCTACGTATCATGAAATGTAAATCTCGTCTATGCTGCGCCAGTTACTGTACATGCCAAGTTTTAATCTACGTATCATGAAATGTAAATTTTTCTCGACCTCGAAACGCTCTGCCCCGATCTGGTTTTAATCTACGTATCATGAAATGTAAATGAGTACATCGCCGAGCTCCTTCACCAGTTCTTCACGCTGTTTTAATCTACGTATCATGAAATGTAAATGTTTATAATTGTGATAGCCAGTAACATGCCATTTCGTTTTAATCTACGTATCATGAAATGTAAATCACGGGCTGTCCGCGCCTTTGAAGCTGTCCGATGCGTTTTAATCTACGTATCATGAAATGTAAATAAAGAGCTTGCACGCGTGATACAGCTAAAGGATATGTTTTAATCTACGTATCATGAAATGTAAATTACGACGTCGGCGATACTTGGACGCAAACGGGTTCTGTTTTAATCTACGTATCATGAAATGTAAATATAATCTTTCCTTTTTGTAGTGCGGCACCTGTTGGAGTTTTAATCTACGTATCATGAAATGTAAATCTGTTTGACGGAGCAACTGCACTAATGAATGGCGATGGTTTTAATCTACGTATCATGAAATGTAAATGCGTATAAAGGCGGCATTGGCAGCTGGATTACAGGGTTTTAATCTACGTATCATGAAATGTAAATCTATATAATACAGTGAATAGGTTCAACTCCTATTAGTTTTAATCTACGTATCATGAAATGTAAATTTTCTTCAAGTGCCTGTAAACGCATTTTATCATCGTTTTAATCTACGTATCATGAAATGTAAATTCATGTAGATATAGCAATAAACAATACTAATTATTAGGTTTTAATCTACGTATCATGAAATGTAAATCAATTCATCAAGAACCATGTGAGACGGTTTCATACCGTTTTAATCTACGTATCATGAAATGTAAATTTCTTCACGCGGCCGCAATTTCATGGGTATTTTTTCAGTTTTAATCTACGTATCATGAAATGTAAATTTAAGATTTATCAAGATGGAGCATGGGGAGACCCGAGTTTTAATCTACGTATCATGAAATGTAAATTTTCCACAGCTGATGCGACCAACAATAGGAAGTTTCGGTTTTAATCTACGTATCATGAAATGTAAATCTGTTCCGGTAGCCGCTGTTCCCGTCGCCGCTGTTGTTTTAATCTACGTATCATGAAATGTAAATTTTAAATCAAGCTTGAGATTAAAGACTTTATTAGCCGTTTTAATCTACGTATCATGAAATGTAAATAAAACTCGCTTGCGTGGTCGCAGGAGTATGGGGTATCAGTTTTAATCTACGTATCATGAAATGTAAATTTCATCATATGATTGATAAGGCATGGTCACGCTCGGTTTTAATCTACGTATCATGAAATGTAAATATTATCGAAGAATTCTTAAACCGCAAAATCCCGGCGGGTTTTAATCTACGTATCATGAAATGTAAATTACCTCGACGACGCGTTTGTCCTGCAAGAGAGCTTTGGTTTTAATCTACGTATCATGAAATGTAAATTAAACCAATTCGTCAAACTGGGTAAGATCACTGCGTTTTAATCTACGTATCATGAAATGTAAATTATACCGATTTTGTTTCACTGAATCTCATTTTTCAGTTTTAATCTACGTATCATGAAATGTAAATATTGGCGACGTGCCGGACGACGAATGGCGGAACTGGGTTTTAATCTACGTATCATGAAATGTAAATGCTTTTTACGAAACTTTATGTCTACGGCGGAACGCCCGTTTTAATCTACGTATCATGAAATGTAAATGTCAGCGTATTAACGGTCGATGCATCAGCCTTAAAGTTTTAATCTACGTATCATGAAATGTAAATATGATTTTCTCCGTCATCGAAATAGTAAACGTGTAGTTTTAATCTACGTATCATGAAATGTAAATTGAGGAAGCAAAGCTACGAATTTTATTGGCCATTCACGTTTTAATCTACGTATCATGAAATGTAAATCTGTCTAGCATACTAATATTCACAAGATCTTGAATTGTTTTAATCTACGTATCATGAAATGTAAATTCGTCCAATCGGACTTGGTATCGGTGCTCAAGCATTGTTTTAATCTACGTATCATGAAATGTAAATCCTTCTGTAGCAGTAATTTGTTCAGTAGCCGCTAGGTTTTAATTTACGTATCATGAAATGTAAAT

>CP025689|1|1|892660-895256|PILER-CR
GTTTTAATCTACGTATCATGAAATGTAAAT	TGTGACAACCCTTTAATACCAAGCGATTCGCAAATA
GTTTTAATCTACGTATCATGAAATGTAAAT	TCCGGGGTAACGCCAACGGCACGTTGCACGCGCTGC
GTTTTAATCTACGTATCATGAAATGTAAAT	TTGCTCATCATCGCACTCAACCATGTCCCCTTGTG
GTTTTAATCTACGTATCATGAAATGTAAAT	GCTGCAGACAGATAATAGACATTCTCACCATCCCGA
GTTTTAATCTACGTATCATGAAATGTAAAT	ACAGCTATCACGTCTGCATTATCTCTACGGCCGCC
GTTTTAATCTACGTATCATGAAATGTAAAT	ATAATAAAGCATTACATTTACTTGTATGATCTTCTTC
GTTTTAATCTACGTATCATGAAATGTAAAT	CTCGTCTATGCTGCGCCAGTTACTGTACATGCCAA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTTCTCGACCTCGAAACGCTCTGCCCCGATCTG
GTTTTAATCTACGTATCATGAAATGTAAAT	GAGTACATCGCCGAGCTCCTTCACCAGTTCTTCACGCT
GTTTTAATCTACGTATCATGAAATGTAAAT	GTTTATAATTGTGATAGCCAGTAACATGCCATTTC
GTTTTAATCTACGTATCATGAAATGTAAAT	CACGGGCTGTCCGCGCCTTTGAAGCTGTCCGATGC
GTTTTAATCTACGTATCATGAAATGTAAAT	AAAGAGCTTGCACGCGTGATACAGCTAAAGGATAT
GTTTTAATCTACGTATCATGAAATGTAAAT	TACGACGTCGGCGATACTTGGACGCAAACGGGTTCT
GTTTTAATCTACGTATCATGAAATGTAAAT	ATAATCTTTCCTTTTTGTAGTGCGGCACCTGTTGGA
GTTTTAATCTACGTATCATGAAATGTAAAT	CTGTTTGACGGAGCAACTGCACTAATGAATGGCGATG
GTTTTAATCTACGTATCATGAAATGTAAAT	GCGTATAAAGGCGGCATTGGCAGCTGGATTACAGG
GTTTTAATCTACGTATCATGAAATGTAAAT	CTATATAATACAGTGAATAGGTTCAACTCCTATTA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTCTTCAAGTGCCTGTAAACGCATTTTATCATC
GTTTTAATCTACGTATCATGAAATGTAAAT	TCATGTAGATATAGCAATAAACAATACTAATTATTAG
GTTTTAATCTACGTATCATGAAATGTAAAT	CAATTCATCAAGAACCATGTGAGACGGTTTCATACC
GTTTTAATCTACGTATCATGAAATGTAAAT	TTCTTCACGCGGCCGCAATTTCATGGGTATTTTTTCA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTAAGATTTATCAAGATGGAGCATGGGGAGACCCGA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTCCACAGCTGATGCGACCAACAATAGGAAGTTTCG
GTTTTAATCTACGTATCATGAAATGTAAAT	CTGTTCCGGTAGCCGCTGTTCCCGTCGCCGCTGTT
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTAAATCAAGCTTGAGATTAAAGACTTTATTAGCC
GTTTTAATCTACGTATCATGAAATGTAAAT	AAAACTCGCTTGCGTGGTCGCAGGAGTATGGGGTATCA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTCATCATATGATTGATAAGGCATGGTCACGCTCG
GTTTTAATCTACGTATCATGAAATGTAAAT	ATTATCGAAGAATTCTTAAACCGCAAAATCCCGGCGG
GTTTTAATCTACGTATCATGAAATGTAAAT	TACCTCGACGACGCGTTTGTCCTGCAAGAGAGCTTTG
GTTTTAATCTACGTATCATGAAATGTAAAT	TAAACCAATTCGTCAAACTGGGTAAGATCACTGC
GTTTTAATCTACGTATCATGAAATGTAAAT	TATACCGATTTTGTTTCACTGAATCTCATTTTTCA
GTTTTAATCTACGTATCATGAAATGTAAAT	ATTGGCGACGTGCCGGACGACGAATGGCGGAACTGG
GTTTTAATCTACGTATCATGAAATGTAAAT	GCTTTTTACGAAACTTTATGTCTACGGCGGAACGCCC
GTTTTAATCTACGTATCATGAAATGTAAAT	GTCAGCGTATTAACGGTCGATGCATCAGCCTTAAA
GTTTTAATCTACGTATCATGAAATGTAAAT	ATGATTTTCTCCGTCATCGAAATAGTAAACGTGTA
GTTTTAATCTACGTATCATGAAATGTAAAT	TGAGGAAGCAAAGCTACGAATTTTATTGGCCATTCAC
GTTTTAATCTACGTATCATGAAATGTAAAT	CTGTCTAGCATACTAATATTCACAAGATCTTGAATT
GTTTTAATCTACGTATCATGAAATGTAAAT	TCGTCCAATCGGACTTGGTATCGGTGCTCAAGCATT
GTTTTAATCTACGTATCATGAAATGTAAAT	CCTTCTGTAGCAGTAATTTGTTCAGTAGCCGCTAG
GTTTTAATTTACGTATCATGAAATGTAAAT

>CP025689|1|1|892660-895256|CRISPRCasFinder
GTTTTAATCTACGTATCATGAAATGTAAAT	TGTGACAACCCTTTAATACCAAGCGATTCGCAAATA
GTTTTAATCTACGTATCATGAAATGTAAAT	TCCGGGGTAACGCCAACGGCACGTTGCACGCGCTGC
GTTTTAATCTACGTATCATGAAATGTAAAT	TTGCTCATCATCGCACTCAACCATGTCCCCTTGTG
GTTTTAATCTACGTATCATGAAATGTAAAT	GCTGCAGACAGATAATAGACATTCTCACCATCCCGA
GTTTTAATCTACGTATCATGAAATGTAAAT	ACAGCTATCACGTCTGCATTATCTCTACGGCCGCC
GTTTTAATCTACGTATCATGAAATGTAAAT	ATAATAAAGCATTACATTTACTTGTATGATCTTCTTC
GTTTTAATCTACGTATCATGAAATGTAAAT	CTCGTCTATGCTGCGCCAGTTACTGTACATGCCAA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTTCTCGACCTCGAAACGCTCTGCCCCGATCTG
GTTTTAATCTACGTATCATGAAATGTAAAT	GAGTACATCGCCGAGCTCCTTCACCAGTTCTTCACGCT
GTTTTAATCTACGTATCATGAAATGTAAAT	GTTTATAATTGTGATAGCCAGTAACATGCCATTTC
GTTTTAATCTACGTATCATGAAATGTAAAT	CACGGGCTGTCCGCGCCTTTGAAGCTGTCCGATGC
GTTTTAATCTACGTATCATGAAATGTAAAT	AAAGAGCTTGCACGCGTGATACAGCTAAAGGATAT
GTTTTAATCTACGTATCATGAAATGTAAAT	TACGACGTCGGCGATACTTGGACGCAAACGGGTTCT
GTTTTAATCTACGTATCATGAAATGTAAAT	ATAATCTTTCCTTTTTGTAGTGCGGCACCTGTTGGA
GTTTTAATCTACGTATCATGAAATGTAAAT	CTGTTTGACGGAGCAACTGCACTAATGAATGGCGATG
GTTTTAATCTACGTATCATGAAATGTAAAT	GCGTATAAAGGCGGCATTGGCAGCTGGATTACAGG
GTTTTAATCTACGTATCATGAAATGTAAAT	CTATATAATACAGTGAATAGGTTCAACTCCTATTA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTCTTCAAGTGCCTGTAAACGCATTTTATCATC
GTTTTAATCTACGTATCATGAAATGTAAAT	TCATGTAGATATAGCAATAAACAATACTAATTATTAG
GTTTTAATCTACGTATCATGAAATGTAAAT	CAATTCATCAAGAACCATGTGAGACGGTTTCATACC
GTTTTAATCTACGTATCATGAAATGTAAAT	TTCTTCACGCGGCCGCAATTTCATGGGTATTTTTTCA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTAAGATTTATCAAGATGGAGCATGGGGAGACCCGA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTCCACAGCTGATGCGACCAACAATAGGAAGTTTCG
GTTTTAATCTACGTATCATGAAATGTAAAT	CTGTTCCGGTAGCCGCTGTTCCCGTCGCCGCTGTT
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTAAATCAAGCTTGAGATTAAAGACTTTATTAGCC
GTTTTAATCTACGTATCATGAAATGTAAAT	AAAACTCGCTTGCGTGGTCGCAGGAGTATGGGGTATCA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTCATCATATGATTGATAAGGCATGGTCACGCTCG
GTTTTAATCTACGTATCATGAAATGTAAAT	ATTATCGAAGAATTCTTAAACCGCAAAATCCCGGCGG
GTTTTAATCTACGTATCATGAAATGTAAAT	TACCTCGACGACGCGTTTGTCCTGCAAGAGAGCTTTG
GTTTTAATCTACGTATCATGAAATGTAAAT	TAAACCAATTCGTCAAACTGGGTAAGATCACTGC
GTTTTAATCTACGTATCATGAAATGTAAAT	TATACCGATTTTGTTTCACTGAATCTCATTTTTCA
GTTTTAATCTACGTATCATGAAATGTAAAT	ATTGGCGACGTGCCGGACGACGAATGGCGGAACTGG
GTTTTAATCTACGTATCATGAAATGTAAAT	GCTTTTTACGAAACTTTATGTCTACGGCGGAACGCCC
GTTTTAATCTACGTATCATGAAATGTAAAT	GTCAGCGTATTAACGGTCGATGCATCAGCCTTAAA
GTTTTAATCTACGTATCATGAAATGTAAAT	ATGATTTTCTCCGTCATCGAAATAGTAAACGTGTA
GTTTTAATCTACGTATCATGAAATGTAAAT	TGAGGAAGCAAAGCTACGAATTTTATTGGCCATTCAC
GTTTTAATCTACGTATCATGAAATGTAAAT	CTGTCTAGCATACTAATATTCACAAGATCTTGAATT
GTTTTAATCTACGTATCATGAAATGTAAAT	TCGTCCAATCGGACTTGGTATCGGTGCTCAAGCATT
GTTTTAATCTACGTATCATGAAATGTAAAT	CCTTCTGTAGCAGTAATTTGTTCAGTAGCCGCTAG
GTTTTAATTTACGTATCATGAAATGTAAAT

>CP025689|1|1|892660-895256|CRT
GTTTTAATCTACGTATCATGAAATGTAAAT	TGTGACAACCCTTTAATACCAAGCGATTCGCAAATA
GTTTTAATCTACGTATCATGAAATGTAAAT	TCCGGGGTAACGCCAACGGCACGTTGCACGCGCTGC
GTTTTAATCTACGTATCATGAAATGTAAAT	TTGCTCATCATCGCACTCAACCATGTCCCCTTGTG
GTTTTAATCTACGTATCATGAAATGTAAAT	GCTGCAGACAGATAATAGACATTCTCACCATCCCGA
GTTTTAATCTACGTATCATGAAATGTAAAT	ACAGCTATCACGTCTGCATTATCTCTACGGCCGCC
GTTTTAATCTACGTATCATGAAATGTAAAT	ATAATAAAGCATTACATTTACTTGTATGATCTTCTTC
GTTTTAATCTACGTATCATGAAATGTAAAT	CTCGTCTATGCTGCGCCAGTTACTGTACATGCCAA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTTCTCGACCTCGAAACGCTCTGCCCCGATCTG
GTTTTAATCTACGTATCATGAAATGTAAAT	GAGTACATCGCCGAGCTCCTTCACCAGTTCTTCACGCT
GTTTTAATCTACGTATCATGAAATGTAAAT	GTTTATAATTGTGATAGCCAGTAACATGCCATTTC
GTTTTAATCTACGTATCATGAAATGTAAAT	CACGGGCTGTCCGCGCCTTTGAAGCTGTCCGATGC
GTTTTAATCTACGTATCATGAAATGTAAAT	AAAGAGCTTGCACGCGTGATACAGCTAAAGGATAT
GTTTTAATCTACGTATCATGAAATGTAAAT	TACGACGTCGGCGATACTTGGACGCAAACGGGTTCT
GTTTTAATCTACGTATCATGAAATGTAAAT	ATAATCTTTCCTTTTTGTAGTGCGGCACCTGTTGGA
GTTTTAATCTACGTATCATGAAATGTAAAT	CTGTTTGACGGAGCAACTGCACTAATGAATGGCGATG
GTTTTAATCTACGTATCATGAAATGTAAAT	GCGTATAAAGGCGGCATTGGCAGCTGGATTACAGG
GTTTTAATCTACGTATCATGAAATGTAAAT	CTATATAATACAGTGAATAGGTTCAACTCCTATTA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTCTTCAAGTGCCTGTAAACGCATTTTATCATC
GTTTTAATCTACGTATCATGAAATGTAAAT	TCATGTAGATATAGCAATAAACAATACTAATTATTAG
GTTTTAATCTACGTATCATGAAATGTAAAT	CAATTCATCAAGAACCATGTGAGACGGTTTCATACC
GTTTTAATCTACGTATCATGAAATGTAAAT	TTCTTCACGCGGCCGCAATTTCATGGGTATTTTTTCA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTAAGATTTATCAAGATGGAGCATGGGGAGACCCGA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTCCACAGCTGATGCGACCAACAATAGGAAGTTTCG
GTTTTAATCTACGTATCATGAAATGTAAAT	CTGTTCCGGTAGCCGCTGTTCCCGTCGCCGCTGTT
GTTTTAATCTACGTATCATGAAATGTAAAT	TTTAAATCAAGCTTGAGATTAAAGACTTTATTAGCC
GTTTTAATCTACGTATCATGAAATGTAAAT	AAAACTCGCTTGCGTGGTCGCAGGAGTATGGGGTATCA
GTTTTAATCTACGTATCATGAAATGTAAAT	TTCATCATATGATTGATAAGGCATGGTCACGCTCG
GTTTTAATCTACGTATCATGAAATGTAAAT	ATTATCGAAGAATTCTTAAACCGCAAAATCCCGGCGG
GTTTTAATCTACGTATCATGAAATGTAAAT	TACCTCGACGACGCGTTTGTCCTGCAAGAGAGCTTTG
GTTTTAATCTACGTATCATGAAATGTAAAT	TAAACCAATTCGTCAAACTGGGTAAGATCACTGC
GTTTTAATCTACGTATCATGAAATGTAAAT	TATACCGATTTTGTTTCACTGAATCTCATTTTTCA
GTTTTAATCTACGTATCATGAAATGTAAAT	ATTGGCGACGTGCCGGACGACGAATGGCGGAACTGG
GTTTTAATCTACGTATCATGAAATGTAAAT	GCTTTTTACGAAACTTTATGTCTACGGCGGAACGCCC
GTTTTAATCTACGTATCATGAAATGTAAAT	GTCAGCGTATTAACGGTCGATGCATCAGCCTTAAA
GTTTTAATCTACGTATCATGAAATGTAAAT	ATGATTTTCTCCGTCATCGAAATAGTAAACGTGTA
GTTTTAATCTACGTATCATGAAATGTAAAT	TGAGGAAGCAAAGCTACGAATTTTATTGGCCATTCAC
GTTTTAATCTACGTATCATGAAATGTAAAT	CTGTCTAGCATACTAATATTCACAAGATCTTGAATT
GTTTTAATCTACGTATCATGAAATGTAAAT	TCGTCCAATCGGACTTGGTATCGGTGCTCAAGCATT
GTTTTAATCTACGTATCATGAAATGTAAAT	CCTTCTGTAGCAGTAATTTGTTCAGTAGCCGCTAG
GTTTTAATTTACGTATCATGAAATGTAAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP025689.1\|QAA24878.1\|888472_890662_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP025689.1\|QAA24873.1\|882695_884156_+\|ISLre2-family-transposase	unknown	unknown	gnl\|CDD\|284250
CP025689.1\|QAA24890.1\|906013_907072_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	unknown	unknown	gnl\|CDD\|234988
CP025689.1\|QAA24880.1\|891185_892178_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
CP025689.1\|QAA24874.1\|884361_885093_+\|CRISPR-associated-endoribonuclease-Cas6	cas6	COG1583_cas6_CAS-I:CAS-III:CAS-IV	gnl\|CDD\|273848
CP025689.1\|QAA24885.1\|900143_901478_+\|HAMP-domain-containing-protein	unknown	unknown	gnl\|CDD\|214599
CP025689.1\|QAA24888.1\|905182_905281_+\|sporulation-protein-YjcZ	unknown	unknown	unknown
CP025689.1\|QAA24881.1\|892180_892459_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP025689.1\|QAA24875.1\|885105_886791_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09754_cas8b2_CAS-I-B	gnl\|CDD\|187884
CP025689.1\|QAA24887.1\|903745_904978_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|376723
CP025689.1\|QAA24886.1\|901523_903623_+\|methyl-accepting-chemotaxis-protein	unknown	unknown	gnl\|CDD\|223910
CP025689.1\|QAA24889.1\|905324_905858_-\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|379228
CP025689.1\|QAA24884.1\|899532_900078_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227939
CP025689.1\|QAA24883.1\|896917_897673_+\|hypothetical-protein	unknown	unknown	unknown
CP025689.1\|QAA24879.1\|890676_891165_+\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP025689.1\|QAA24872.1\|882257_882440_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379233
CP025689.1\|QAA24877.1\|887640_888405_+\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
CP025689.1\|QAA24876.1\|886787_887654_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
CP025689.1\|QAA24882.1\|895536_896946_+\|ATP-binding-protein	unknown	unknown	gnl\|CDD\|379114
CP025689.1\|QAA24891.1\|907068_907275_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP025689.1\|QAA24878.1\|888472_890662_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	2.19197e-60
CP025689.1\|QAA24873.1\|882695_884156_+\|ISLre2-family-transposase	gnl\|CDD\|284250	pfam06782, UPF0236, Uncharacterized protein family (UPF0236).	3.98566e-28
CP025689.1\|QAA24890.1\|906013_907072_-\|small-ribosomal-subunit-biogenesis-GTPase-RsgA	gnl\|CDD\|234988	PRK01889, PRK01889, GTPase RsgA; Reviewed.	1.10514e-177
CP025689.1\|QAA24880.1\|891185_892178_+\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	1.85048e-158
CP025689.1\|QAA24874.1\|884361_885093_+\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	1.62689e-24
CP025689.1\|QAA24885.1\|900143_901478_+\|HAMP-domain-containing-protein	gnl\|CDD\|214599	smart00283, MA, Methyl-accepting chemotaxis-like domains (chemotaxis sensory transducer). Thought to undergo reversible methylation in response to attractants or repellants during bacterial chemotaxis.	1.07353e-47
CP025689.1\|QAA24881.1\|892180_892459_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	8.54755e-27
CP025689.1\|QAA24875.1\|885105_886791_+\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187884	cd09754, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	3.09296e-19
CP025689.1\|QAA24887.1\|903745_904978_-\|aminopeptidase	gnl\|CDD\|376723	pfam02073, Peptidase_M29, Thermophilic metalloprotease (M29).	0
CP025689.1\|QAA24886.1\|901523_903623_+\|methyl-accepting-chemotaxis-protein	gnl\|CDD\|223910	COG0840, Tar, Methyl-accepting chemotaxis protein [Cell motility and secretion / Signal transduction mechanisms].	6.88497e-53
CP025689.1\|QAA24889.1\|905324_905858_-\|N-acetyltransferase	gnl\|CDD\|379228	pfam13508, Acetyltransf_7, Acetyltransferase (GNAT) domain. This domain catalyzes N-acetyltransferase reactions.	3.96601e-08
CP025689.1\|QAA24884.1\|899532_900078_+\|hypothetical-protein	gnl\|CDD\|227939	COG5652, COG5652, Predicted integral membrane protein [Function unknown].	5.16778e-06
CP025689.1\|QAA24879.1\|890676_891165_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	3.7839e-60
CP025689.1\|QAA24872.1\|882257_882440_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379233	pfam13518, HTH_28, Helix-turn-helix domain. This helix-turn-helix domain is often found in transposases and is likely to be DNA-binding.	1.13866e-06
CP025689.1\|QAA24877.1\|887640_888405_+\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.90288e-21
CP025689.1\|QAA24876.1\|886787_887654_+\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	9.66773e-56
CP025689.1\|QAA24882.1\|895536_896946_+\|ATP-binding-protein	gnl\|CDD\|379114	pfam13304, AAA_21, AAA domain, putative AbiEii toxin, Type IV TA system. Several members are annotated as being of the abortive phage resistance system, in which case the family would be acting as the toxin for a type IV toxin-antitoxin resistance system.	5.7177e-12

>CP025689.1|QAA24881.1|892180_892459_+|CRISPR-associated-endonuclease-Cas2
MYVILVYDISTEGNGAKVLRHVFKTSKKYLTNVQKSVFEGEITPALLEQLRLELNQFIRSDLDSVVVFSSRQEKWLEKSFWGMEDDKTSNFF
>CP025689.1|QAA24880.1|891185_892178_+|type-I-B-CRISPR-associated-endonuclease-Cas1
MPESYYLFSNGVLKRKDNVVRLTAPNGKFKDLKIEMTRDIFLLGEVDVNTKCLNYLGQLSIPVHFFNYYGFYTGSFCPRETNVSGHLLVNQVEHYSDLSKRIILAREFVKGSCYNMMRNLRYYRQRGKDVNKQIIEMKKLQKEIERTKNVQELLGIEGNIRKHYYNAWNVIVNQQIDFTKRVKHPPDNMINTLISYLNALIYSSCLSEIYVTQLNPTISYLHSASTRRFSLCLDISEIFKPLIADRIIFSMLNKHEITEKDFKKESNYYFLNEKARKRILRVFDERMKETITHRVLRRKVSYRRLIRLECYKLIKHMTGDKKYESFKIWW
>CP025689.1|QAA24879.1|890676_891165_+|CRISPR-associated-protein-Cas4
MRVTGAMFYYYFVCRRKLWLFAHDLRYEDTDENVVLGRLLDQSSYERETKHIMIDGTVNVDFIQDWTILHEVKKSRSIEEASIWQAKYYLYFLQERGIEIKKAILDYPKLRKRQKVALTQNDRATIQCTLEDIEKIITLRTAPDIIEQPICRKCAYFEYCYI
>CP025689.1|QAA24878.1|888472_890662_+|CRISPR-associated-helicase/endonuclease-Cas3
MNQYLAKSDPKETIIEHTENLLKNVSLLKSLYPNVKVDWYLLKLVCLVHDLGKMNALFQNKLNGKRSRNEIPHGYLSLAFIDYEKLEYKGYSEDQIKIVYQAIAYHHERPITFEEEVWREAMAKMEREVDGFHYNRLDDPLFFDPDFSDAFFCLNERTYSNKDYDSFIDYVMLKGLLNRMDYAASAHVEVEHINNFLNDAMNQLGYKWNVLQTYMQAEQDHNVIVIAQTGMGKTEAGLLWLGNNKGFFTLPLKAAINAIYYRITENIVKENKENRVGLLHSETYGQYLNRKEELEGEIEEYVTKTKQLSLPLTICTLDQIFDFVYRYPGFEPKLATLSYSRVIIDEIQMYSSDLLAYLILGLSTISKFGGKFAILTATLPGIVVDLLEKQKVTFKKPKIFVNNQIRHSVKVIHEEITAPVIKQKYHDNKILVICNTVKQAKQMYDVLSEEYGDEVYILHSQFIKKDRKEKEKQIFDFGQRENKCHGIWVTTQVVEASLDIDFDLLFTELTDLNGLFQRMGRCYRKRNLDVSYNCYVFDGGNKYCSGVGHVVDKDIFSLSKDLLKSIDGKITEQRKVDLIQMLYSTEVLEKTDYYKDILSTIKYVQSYNDFELPKEKVKHLFRNINSRTVIPKDVFLANQEEIKAYIDTLQRPQRGLNKSEKAQLRKEKTEARIKFADFTVDLPGYLVKNQFVTPKKINDYEWYELFDCVYDDKGVTGRKSETNFDDFTF
>CP025689.1|QAA24877.1|887640_888405_+|type-I-B-CRISPR-associated-protein-Cas5
MKAIKVKLWQDLVNYKKPTSFQLKETYPLPPFSTVIGMIHNLCQYDTYHEMKVSIQGKYFSKTNDLATRYEFKNGMKYDAKRHQLKVGDYGISRGVSTTELLVDVELVLHIIPKDQSIVTEIYDAFLHPWEYPSLGRREDIAVIKQVKIVEVEKQVLSKDKRLGKNCGAYVPIEWVENRNVLFKNRQQGISDLGTRYLLTRNYELVNYGTKKNPKVFRKWNKQEVYYATYLSAPRKSQVYIDNDENDQNIVFIV
>CP025689.1|QAA24876.1|886787_887654_+|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MNPKGLTMTIIFQAESANYGESIGNVASLKKMSRNNGDQYTYISRQALRYNMIEQLGEITTPVSAEGSGDKTVVQFAPEATIDKYPEIDFFGYLKTEKGSGGKKRSAKVRLSNAISLETFKGDLDFLTNKGLADRLETNMNLAQSEIHRSYYCYTVVMDLDQIGIDGKVEIASNEKARRVNKLLDTISLLYRDIRGRREDLKPLFVVGGVYDVKNPVFQNTVKLENNRLNVEQIKDVLYDGIKENTYYGLVKGTFSNDGEIRESFDVASIPDFFRTLKDKVIDYYESN
>CP025689.1|QAA24875.1|885105_886791_+|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MGETNIEVTLNEWLYNAGVVGFVNIVGKDNVTIVDNSTISFSKDVLLDFEDKYFDYFINTYKKQLPWYKIISYESEMQRYEDNNFDTFDEQALERLNKYIKDTVKKYIKSNSYKAAYQLMNSETDLLALEKKLKPVTTPKKSETFLDEKEFILNEVKERLPILKEIITCCKSKEGRKYLAGKNIIYNQIKNAWNGVCFLNPQTKEKDMYVDFKNHFVVPTEEYFEVDDPKRKYHCFVCDRPVKNLSMDLSFLNQTGFDTNRKSSHVWNFTNDVGICPFCRLIYSCVPAGFTYVYNRGLFVNDSTTVINLLRVNENIKLNTLEQNDTAVRSVNTYYALTKAMQEQFTGKINYELADIQIVRYENECYHFNILSRLALSVLKQSKESTNRLLYTGYREGNVNFNLYELVMEHLFNKVNLFTTIHKLIVYKLSNVPNLYYNISHVNQILEINTNFLRGIGYMEGLVKEEVRKANQFGYYFRKAYKNKGADNKLSGISYKLLNALKTSNINMFMDVLLSCYSYLKQQVPQLFLQVFTSDETFKTIGYAFVAGIIDHKNEEGRESK
>CP025689.1|QAA24874.1|884361_885093_+|CRISPR-associated-endoribonuclease-Cas6
MMRLCILCDLQNEQIPVDYRRKVLSLLKLGLSNTNNSLYNTLYGLGSNKQKDFAYSAYIPAPKFTQETIIIKDKKLIINFSTSDLEIGINVYNAFINLRKKPVPFSKNNTIIIKDVIIKKEKQIYDKRVIFKTMSPLVARDHNPKTKKDWYFIHDDNSWSDILKRNLSFQLKNSSIHVPLTDIEQMKIQSAAMKKTVIKLYDVHVTCSLGTFSVESKPYLLNYLYQTGLGSHRGLGFGMLDIV
>CP025689.1|QAA24873.1|882695_884156_+|ISLre2-family-transposase
MYTDQGEYIRNRGLLSMDSIKDLLEIWKNQTSLLAFEEEATAYMYQFMRRSVEQVFSLLDQAITREKQAEGWKVDSHKDQRILQFLFGPVTLYHTRMINPEGHACYPLDNLLRLRKHMRYSPNVEYETATLASRMTCREVVKTLATWTQVQMSHTTVMRCVRAVGEAQEKQDQELVIQAENGELDGKRQPNFLFAEADGTFVRGLKKRQHIEIKHFILYEGWVKNGKRRLLKEPYAVMTSKGLDTFWEQVGAAVEQRYRLWQTQVVANSDGGVGYDEAHFKDAFCGSHKRIWVQLDAFHVAQSLIRSLHGDKAWITRIQQAIQRKDRTEVILLLDTYESNLDEDERIKQVEKVKQYLIGHWDRLFDWREIMAKETLPENAGRLGAMESNQRHLTFRMKKRGMHWGESEEGMVKVIQGIRNGTLKAAYLSSFIPTKRDERIIKKMIRIASLLKEPTVPSIGAHRGRIGTNASSSSAVGKLNKVLTFA
>CP025689.1|QAA24872.1|882257_882440_+|helix-turn-helix-domain-containing-protein
MVAVKDIVEGRESLGQAARNSGVSRCTVKDRLRKYDESGIEGLKDTHTWKRTNHPFEGWL
>CP025689.1|QAA24882.1|895536_896946_+|ATP-binding-protein
MDMAVNVRVSSVELQNCKNVVQGKLYFPCSKSHSLKRADVLGVYGQNGSGKTAIVSAFQVVRTLLNGGPLESGIDRLIYQRSDTARFLFTFLIGMANKHYEVVYDFSLTKRDLDADDAVNLANDRQRDPVTVTHEEIRYKQLVKGARYRTLIAFTQAGRETKAAPNTVASKMRSRKDDRFVSYKVSAVLAQQQHTSFIFRKDNFGLLEQTLDELPYQLVRALKQVFAARLFVLSNHDSGRSLADVSIPIHYSSTNKEDYGVIELPINHPKKVDRKTYELLTQMFQAISKILKEIVPGLTVEVRKLGDQIMEGGGRGVRIELAARREGRLLPISCESDGIKKLVAVLSSLIVMYNDMNACIVIDELDAGIYEFLLGELVKILKDSGKGQLLFTSHNLRLLEVLEKDNLVFTSANPENRYIVLKGIRDSSNIRDVYLRAIQLGNDGDEVYQPTDRYEIMEAFDEAGEQNNA
>CP025689.1|QAA24883.1|896917_897673_+|hypothetical-protein
MRQVNKTMPKKVLVFLVEGVSDERALAAIRRYVPDKYRVAIHVTHGDLFTRPGIRKNVKGRVGDQVRKMMHETKYRKQEIAAVIQVTDTDGTFVAADDVRVNASVGRAPVYQESGIMVANSGIQQYIQKRNRIKASELHTMRTSDEIMAGIYYFLLYFSCNLDHVMHHKRNMTIEEKINQSRAFEQACREDPQHFYYFFHNQPFAVAGSIDETWSFIEKGMHSLQRYTNFQLVFDLLDSLEKSKPRSEKKN
>CP025689.1|QAA24884.1|899532_900078_+|hypothetical-protein
MLKNRKAFFFWLVLILVIIGLIYKGSSTPYAEQDLQPFLKAHFQWTAETFPHVDFYYSGQHVTSDDPYALFEFVFRKASHVAEYCLLTFMLINLFMTTVMPRLLCYLCGPAISLCYAMFDEWHQTFVPGRTGHLIDTFTFDFSGMVLAMVIVFLLDVYYYLFYTGSHQPQRTTHFGQSQRE
>CP025689.1|QAA24885.1|900143_901478_+|HAMP-domain-containing-protein
MNGKRLVFLREESSVETSEKNNKNNKRTPRRYNLHSAYFAIFCLGALATAFLFYFFGRNEWLIAAFGAAVAVLIIGVASLYGIFNAYNLRVKRLRAAVSKAEEGDLQTIAHDTENDELSRLAADINRMIQTNHARVGMMTDVSEKVKNASQTIAANVEEHRASSSEIGSAMSEIAAGASDQAELMSKNKQATDQLKERTNEIEEQTALMSTGAEQLIDVSDRNKQSVTKLRKHSERTISATADIIDAIASLEARSKNVGQIITDVSEIAGQTNLLALNAAIEAARAGEQGKGFAVVADEVRKLSEQTDQALNEISELINGIRADTAHTVTFAGKTSKVLEEQFVVVADFEKASAQITEAVAENRKQIGMITASIKEMSERTQEIKTTIDGMAQISEQNAAGTEQATASIEEQTAGLDHLSKLAADLESDAEAIRAMLCSDRQTK
>CP025689.1|QAA24886.1|901523_903623_+|methyl-accepting-chemotaxis-protein
MGKKETKKDKKLRNKPHRIEEKDNRVIRFIQHLFGYINGRALQNMSLRKQLLIPIVSVMVIVSIIGAAFSYFYGARLIREQLTTATTQQLNATDQTFNTYFDDAQSVVRQFTINPMLNNVDKNFNQIQQSFENVLSSNTKYQALTYASAKKDIVRSPLYFFSSSYDPTAERWYQEGAAGKGKSIWTDPYIDQVTKQNVVSVEQAVVDGNRVKGVIKMDLFIQSIVREVSASKLGDNGYAALLDSKGTYIASANQDQVGKSVAKQDFYKKMHQMGKNGSFYATIDGVKRLVVFKTNKTSGWTLLGIIDNGEIANKANLIALPSVLTILIIIAVAILYIIYVFGVMLKRLKKIQTAAGKIEKGDLTVVIPIEGKDEFAQLTHSINALARTNRQALKKMADVSQQITGASQTLVASSEENVASANEITATVTEIAAGASNQSASIDESQASLQKLLQQVNQIDQQSKEALAGANQMKDHASGGREKMNHLSSQSRSSADTTHKIITTVQKLDEHAKNVHQIVDVLDGIARRTNLLSLNASIEAAHAGEHGKGFAVVAGEIRKLAQQTNDSLKEVTASVQSMNEEIKQAVAYCDQTATVLQGQTNAVSESNHAFKEIEKTIQQNVKGMETIADAIIMTHQQIEQVTQGAQTIAATSEETAASTEEMSASVQEQTASMEELNRLAGELEQQAQIMQEEIKRFKI
>CP025689.1|QAA24887.1|903745_904978_-|aminopeptidase
MENFEKLLDHYADITVKVGLNVQKDQEVMIFAPIESPEIVRKVVKKAYEAGARNVYVEWNDEALTRLRLSLAPEASLNTFPTWKARAHQELSDQKAAFLYIYSPNPDLLNGIDAKRIAAAQKAAAAANKQFSNDKSSAKVSWTIISVPTLAWSKKIFPDLPADERIDALWKQIFAITRADAADPETAWKKHIQSLSDKLDDFNSARFKKLHYKGPGTDLVIELPDKHLWAGGGMVNDQGIPFQPNMPTEEIFTLPLKTGVNGTVASTKPLNFGGNLINQFSLTFKEGKIVDYAAKQGLDTLRQIIETDEGSHYLGEVSLVPHHSPISDTNLIFYNTLFDENASCHLAIGHSYPFNYQGGRKMTLDELSTHGANQSLMHVDFMIGSGELDIDAEATDGTLTPIFRSGNWVI
>CP025689.1|QAA24888.1|905182_905281_+|sporulation-protein-YjcZ
MGAPVGFGNNSGFALVVVLFILLIIIGATWVC
>CP025689.1|QAA24889.1|905324_905858_-|N-acetyltransferase
MNQNLQPLRHEDFDLFFQIMEQSFPSVEVRPRDHEYDLLNEDAFTLWARYDAANRFLEGFIAEWAFRDFLFIEHFAVAPKLRGKGIGGQMLKAYLRQADRPVLLEVEEPETELAERRIQFYRRNGFMLSSFGYVQPDLRRTGDRIRLRLMQYPQALSESEFQQRKAAIFHLVYKRVM
>CP025689.1|QAA24890.1|906013_907072_-|small-ribosomal-subunit-biogenesis-GTPase-RsgA
MKLEKYGWNQYIEKCSLTLNHDQSFGRVFSEYKGQYKLMTEQGSYLAEVTGKFRHQANGREDFPAVGDWVVCRERPSEHKAAIDRVLPRFSKFSRKAAGSTTVEQIVAANIDTAFLVMALNHDFNVRRLERYLTMAWDSGANPVVLLSKADLCADLDAKVASVQEVAFGVPIITVSAIADTGKEQLGAYLGEGKTVVFLGSSGVGKSTMTNWLCGEIIQKVNAARADDDRGRHTTTSRELIVLPNGGVIIDTPGMRELQLWTASEDSLDHSFTDIETLAVRCRFRDCSHQNEPGCAVQEALNTGALSQSRYDSYLKLQRELAFIRRKNNVQERLKEKARWKKIHKAIRKKHE
>CP025689.1|QAA24891.1|907068_907275_-|hypothetical-protein
MYYGKQNPQDLINFNCLLPPIPDPRESLTFLLTIRDGRLLAWSYSLWKDRADGLFLIPNFLIKTGDIH

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Crispr_ID: CP025689_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025689_2

2644316-2644452

Orphan

Consensus_repeat	Method
ATAAGCGGAATTTTTCCGTTTATTT	PILER-CR

2 spacers

The CRISPR arrays of CP025689_2

>merge|CP025689|2|2644316-2644452|PILER-CR
ATAAGCGGAATTTTTCCGGTTAAGCACAGAAAAACCCTCCATTTTCACGTTTTTCGATTCGATAAGCGGAATTTCTCCGTCTATTTAAGTAATTTTTTCATTCATTTTCCAATTAAGCGGAATTTTTCCGTTTATTT

>CP025689|2|2|2644316-2644452|PILER-CR
ATAAGCGGAATTTTTCCGGTTAAGC	ACAGAAAAACCCTCCATTTTCACGTTTTTCGATTCGATA
AGCGGAATTTCTCCGTCTATTTAAG	TAATTTTTTCATTCATTTTCCAATTA
AGCGGAATTTTTCCGTTTATTT

Protein	Signature genes	Signature genes Name	Protein_function
CP025689.1\|QAA27066.1\|2631205_2632168_+\|taurine-ABC-transporter-permease-TauC	unknown	unknown	gnl\|CDD\|223673
CP025689.1\|QAA26378.1\|2651588_2652497_-\|transposase	unknown	unknown	gnl\|CDD\|273806
CP025689.1\|QAA26370.1\|2644757_2647271_-\|pyridine-nucleotide-disulfide-oxidoreductase	unknown	unknown	gnl\|CDD\|163244
CP025689.1\|QAA26372.1\|2647834_2648137_-\|sulfurtransferase	unknown	unknown	gnl\|CDD\|238089
CP025689.1\|QAA26374.1\|2648581_2648845_-\|metal-sensitive-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197390
CP025689.1\|QAA26369.1\|2642235_2642790_+\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP025689.1\|QAA26373.1\|2648213_2648534_-\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|238089
CP025689.1\|QAA26365.1\|2635707_2636334_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|260082
CP025689.1\|QAA26375.1\|2649166_2649472_+\|type-II-toxin-antitoxin-system-antitoxin,-RelB/DinJ-family	unknown	unknown	gnl\|CDD\|274102
CP025689.1\|QAA26379.1\|2652795_2654409_+\|multicopper-oxidase-family-protein	unknown	unknown	gnl\|CDD\|225043
CP025689.1\|QAA26376.1\|2649720_2650071_-\|DUF2200-domain-containing-protein	unknown	unknown	gnl\|CDD\|337575
CP025689.1\|QAA26367.1\|2638439_2638598_-\|FbpB-family-small-basic-protein	unknown	unknown	gnl\|CDD\|379027
CP025689.1\|QAA26363.1\|2632161_2632926_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224041
CP025689.1\|QAA26377.1\|2650229_2651192_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	unknown	unknown	gnl\|CDD\|223120
CP025689.1\|QAA26362.1\|2629571_2630609_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|223787
CP025689.1\|QAA26364.1\|2633054_2633810_-\|isoprenyl-transferase	unknown	unknown	gnl\|CDD\|184840
CP025689.1\|QAA27067.1\|2633975_2634770_-\|DUF817-domain-containing-protein	unknown	unknown	gnl\|CDD\|377545
CP025689.1\|QAA26371.1\|2647313_2647547_-\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|239274
CP025689.1\|QAA26366.1\|2636355_2638107_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224195
CP025689.1\|QAA26368.1\|2638827_2641890_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225272

Protein	Function_ID	Function_description	E-value
CP025689.1\|QAA27066.1\|2631205_2632168_+\|taurine-ABC-transporter-permease-TauC	gnl\|CDD\|223673	COG0600, TauC, ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Inorganic ion transport and metabolism].	4.16515e-34
CP025689.1\|QAA26378.1\|2651588_2652497_-\|transposase	gnl\|CDD\|273806	TIGR01784, Uncharacterized_protein_pSLT051, conserved hypothetical protein (putative transposase or invertase). Several lines of evidence suggest that members of this family (loaded as a fragment mode model to find part-length matches) are associated with transposition, inversion, or recombination. Members are found in small numbers of genomes, but in large copy numbers in many of those species, including over 30 full length and fragmentary members in Treponema denticola. The strongest similarities are usually within rather than between species. PSI-BLAST shows similarity to proteins designated as possible transposases, DNA invertases (resolvases), and recombinases. In the oral pathogenic spirochete Treponema denticola, full-length members are often found near transporters or other membrane proteins. This family includes members of the putative transposase family pfam04754.	1.03051e-07
CP025689.1\|QAA26370.1\|2644757_2647271_-\|pyridine-nucleotide-disulfide-oxidoreductase	gnl\|CDD\|163244	TIGR03385, Coenzyme_A_disulfide_reductase, CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol. [Cellular processes, Detoxification].	4.34709e-153
CP025689.1\|QAA26372.1\|2647834_2648137_-\|sulfurtransferase	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	2.64256e-25
CP025689.1\|QAA26374.1\|2648581_2648845_-\|metal-sensitive-transcriptional-regulator	gnl\|CDD\|197390	cd10155, BsYrkD-like_DUF156, Uncharacterized protein YrkD from Bacillus subtilis and related domains; this domain superfamily was previously known as part of DUF156. This domain family contains an uncharacterized protein YrkD from Bacillus subtilis and related proteins. This family is part of a larger superfamily that contains various transcriptional regulators that respond to different stressors such as Cu(I), Ni(I), sulfite, and formaldehyde, and includes CsoRs (copper-sensitive operon repressors). CsoRs form homotetramers (dimer of dimers). In Mycobacterium tuberculosis CsoR, within each dimer, two Cys residues on opposite subunits, along with a His residue, bind the Cu(I) ion (forming a triagonal S2N coordination complex, C-H-C). These residues are conserved in the majority of members of this superfamily. In this family, however, not all these residues are conserved, there is an Asn instead of the His (C-N-C); also a conserved Tyr and a Glu residue that facilitates allosteric regulation of DNA binding for CsoRs are very poorly conserved.	1.0023e-30
CP025689.1\|QAA26369.1\|2642235_2642790_+\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	4.60838e-08
CP025689.1\|QAA26373.1\|2648213_2648534_-\|rhodanese-like-domain-containing-protein	gnl\|CDD\|238089	cd00158, RHOD, Rhodanese Homology Domain (RHOD); an alpha beta fold domain found duplicated in the rhodanese protein. The cysteine containing enzymatically active version of the domain is also found in the Cdc25 class of protein phosphatases and a variety of proteins such as sulfide dehydrogenases and certain stress proteins such as senesence specific protein 1 in plants, PspE and GlpE in bacteria and cyanide and arsenate resistance proteins. Inactive versions (no active site cysteine) are also seen in dual specificity phosphatases, ubiquitin hydrolases from yeast and in sulfuryltransferases, where they are believed to play a regulatory role in multidomain proteins.	1.32636e-31
CP025689.1\|QAA26365.1\|2635707_2636334_-\|hypothetical-protein	gnl\|CDD\|260082	cd08545, YcnI_like, Reeler-like domain of YcnI and similar proteins. YcnI is a copper-responsive gene of Bacillus subtilis. It is homologous to an uncharacterized protein from Nocardia farcinica, which shares a conserved three-dimensional structure with cohesins and the reeler domain. Some members in this YcnI_like family have C-terminal domains (DUF461) that may bind copper.	1.80161e-33
CP025689.1\|QAA26375.1\|2649166_2649472_+\|type-II-toxin-antitoxin-system-antitoxin,-RelB/DinJ-family	gnl\|CDD\|274102	TIGR02384, Putative_antitoxin_RelB, addiction module antitoxin, RelB/DinJ family. Plasmids may be maintained stably in bacterial populations through the action of addiction modules, in which a toxin and antidote are encoded in a cassette on the plasmid. In any daughter cell that lacks the plasmid, the toxin persists and is lethal after the antidote protein is depleted. Toxin/antitoxin pairs are also found on main chromosomes, and likely represent selfish DNA. Sequences in the seed for this alignment all were found adjacent to toxin genes. The resulting model appears to describe a narrower set of proteins than pfam04221, although many in the scope of this model are not obviously paired with toxin proteins. Several toxin/antitoxin pairs may occur in a single species. [Cellular processes, Toxin production and resistance, Mobile and extrachromosomal element functions, Other].	6.87303e-14
CP025689.1\|QAA26379.1\|2652795_2654409_+\|multicopper-oxidase-family-protein	gnl\|CDD\|225043	COG2132, SufI, Putative multicopper oxidases [Secondary metabolites biosynthesis, transport, and catabolism].	1.6266e-94
CP025689.1\|QAA26376.1\|2649720_2650071_-\|DUF2200-domain-containing-protein	gnl\|CDD\|337575	pfam09966, DUF2200, Uncharacterized protein conserved in bacteria (DUF2200). This domain, found in various hypothetical bacterial proteins, has no known function.	3.58867e-79
CP025689.1\|QAA26367.1\|2638439_2638598_-\|FbpB-family-small-basic-protein	gnl\|CDD\|379027	pfam13040, Fur_reg_FbpB, Fur-regulated basic protein B. This family of proteins is regulated by the ferric uptake regulator protein Fur. This family represses expression of the lutABC operon encoding iron sulfur-containing enzymes necessary for growth on lactate.	0.00366499
CP025689.1\|QAA26363.1\|2632161_2632926_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224041	COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism].	1.0337e-122
CP025689.1\|QAA26377.1\|2650229_2651192_-\|tRNA-dihydrouridine(20/20a)-synthase-DusA	gnl\|CDD\|223120	COG0042, COG0042, tRNA-dihydrouridine synthase [Translation, ribosomal structure and biogenesis].	1.38576e-89
CP025689.1\|QAA26362.1\|2629571_2630609_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|223787	COG0715, TauA, ABC-type nitrate/sulfonate/bicarbonate transport systems, periplasmic components [Inorganic ion transport and metabolism].	5.41354e-35
CP025689.1\|QAA26364.1\|2633054_2633810_-\|isoprenyl-transferase	gnl\|CDD\|184840	PRK14830, PRK14830, undecaprenyl pyrophosphate synthase; Provisional.	1.49514e-145
CP025689.1\|QAA27067.1\|2633975_2634770_-\|DUF817-domain-containing-protein	gnl\|CDD\|377545	pfam05675, DUF817, Protein of unknown function (DUF817). This family consists of several bacterial proteins of unknown function.	1.87225e-118
CP025689.1\|QAA26371.1\|2647313_2647547_-\|glutaredoxin-family-protein	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	7.21722e-28
CP025689.1\|QAA26366.1\|2636355_2638107_-\|hypothetical-protein	gnl\|CDD\|224195	COG1276, PcoD, Putative copper export protein [Inorganic ion transport and metabolism].	1.2706e-36
CP025689.1\|QAA26368.1\|2638827_2641890_-\|hypothetical-protein	gnl\|CDD\|225272	COG2409, COG2409, Predicted drug exporters of the RND superfamily [General function prediction only].	7.26427e-79

>CP025689.1|QAA26369.1|2642235_2642790_+|TetR/AcrR-family-transcriptional-regulator
MVGTKNNRRTQYTIQVIKEAFLRLLNTNELSKITVTQICREADVNRGTFYLHFDDPLDLFHKIEAELVDQIRPILAMRPQEQLHDWLKRLIIKLKANEAVSRIILANYRDGIMINELFSEVQEQAIEEFKEDFHEQNPHILKYYFSYFVNGSISAILSWFADEEDQSIEGITKALANVLSRSTE
>CP025689.1|QAA26368.1|2638827_2641890_-|hypothetical-protein
MRGIIKARWIILCLWLVATVVLVAMQPDINAILRDRGQKALNEDSPSVQADAILSKMEKSKGTNNLIVFHDKTKISNNELNQIEQGVTQFRDDADTLGVADIMDPFSIPEAKSSLISKDKTTVMVSFKLDKKSREIDDIKKAIDQRLDKVTVTHYLSGEDFINNDYLKASQGGVEKSAALTVLFILIVLVIMFRSIVTPVISLLAVMFSYLCSMGIAAQLIDKAGFPLTSLTQMLLILILFGIGTDYNILLFNRFKEELANGLSVDDAIVSTYQTAGKTIVYSILTVFIAFAALLFSQSPIYQSGIVVVIGVAFLLLEILTLTPFAMKLLGKKLFWPSKSTKGHGENRMWAGTASLATRHPIIAVILVAILIVPAVFFYQEKLNFDTIGELGNSYPSSKAMNIVADHFGKGNAMPATVVIENKKALDNSASLAAIDRLTGQLEKIKGVKQVSSITRPQGQEVNGFYIGDQTKSVTDGLSATRKGIDQIGGGLKTAQKKLGSADFSQVNKMVDGTAKLENGMTALTSGLKQIQNGISGTGQSQTISDGIGQMESNLEKMSGAVNTLAGNYEQMQSGYAKMGTSYQDTAKALLGVKNALTQMQMLTSALGDSSPGVADDQNYLQLKAGIDQLSASLAKITPEGIDALNKNYNALTSGFKTANTHLTEMSAGLSKMAEGLEKMKSGLDSASSGIGKIVTNMDQVTDGLGQMKSGQQKLADGLNGFHTFSNKLADVNKGLDQLSGGLGKTNAFLSQLNENRAFSIPDEALKDKQYQQALDAFMSKDRTITKITVILDNDPYSKNALNTIKQMNTLSRSGVKGTELADANVAVAGPSSTTYDTNNVLTKDLNRLTVIVLIGVLLVLIVVMRSFWIPVFITVSLMGAYYAAMFVLNALFITMLGLEGISSFVPFFAFIVIVALGVDYSIFLLARYKEYPLMSGKEAIVEAAKRVGTVILSAFVILGGTFATLMPSGIVLLIELATAVITGLIVLCFIMLPIFVPAMISLFDSPPTFKRSAESAVNE
>CP025689.1|QAA26367.1|2638439_2638598_-|FbpB-family-small-basic-protein
MVRRRFVSFNKLVQQNISELLSTESAMQALEAKLDQRRAAKRVNSKPQSKTR
>CP025689.1|QAA26366.1|2636355_2638107_-|hypothetical-protein
MKQKISAFLALIFFSLMFASFASAHAFVVQSNPAQNQQVNGNLKQVTIQFNEEIQPAFLTLEVLDQKGSRVDTDHAQRNKKNRTVLENGVKKPLTSGYYRMNWKVVSADGHAVHGTIGFHVGQPTESAANGQASSDARSDLPGVDQVVIKWLIYLGLSFFFGILFFLKFFNPARNLPIYHQKALQRTLWSAAGILLLGVLLALPLQVTRNADVNWLHAFSGKAVGETLMATSFGTPWFLQISSLILCIALLFWLFRTRSERTVRGLLWVLIGLLFVFSLSKAFIGHAASTEDQELRLWAVAADFLHLSAAAIWIGSLLSLLLFLPRSVKNNDSPELQKKIYWQTLHRFSNVALLLVGVIFLTGLIGTLIHLTSFRAFYTSIYGWIIIIKAALLLIMLLFALYSNMRAQKQGDFLRKSVLGELLIGLTVLLAAAVLTNVSPPVPKAAVDEGTFEGFSAKFNNGKPTKTAHPPTVLEDPKKTIRAKEKSYVLTLRVEPLKLGPNTLYLDVLDHGRRARNLQQVVLKIRCIDMDMGETKVQVPLAKLGKGFVVNDAFDMKHRFLINVHVLDKDYQAVDKDFIVNIK
>CP025689.1|QAA26365.1|2635707_2636334_-|hypothetical-protein
MKKFSQTITAAFFSAVLLFAFHDSASAHVTVKPVQSITGSSETYTITVPTEKNIPTTKVALRIPKNVQFYSYQPVPGWTTEVIKNAHGQAQTVSWTAKESGIAPGAFQQFQFRALNPKQTGALAWNAYQTYKDGSIVEWTGKENGETPHAITNVVKSADTTRSVPHGDRGNQILSLTAIVLSAIAIALSVITLVALRKKKDKVSSDAK
>CP025689.1|QAA27067.1|2633975_2634770_-|DUF817-domain-containing-protein
MDALKQLICFAWEQTLACIFPVVIFASLAFTQSVSFTFLPRYDCLLVIFLLMQWWMVYSGMETKDELKVITLFHLIGLALEIFKVHMGAWAYPEKGYFKILGVPLYSGFMYASVASYLCQSWRRLRVELVRWPPFLIVVTLALAIYLNFFIHHYWLDVRWWLTGLVVIVFWRSWVIYEVNGIRYRMPLTLSFVLIGFFIWIAENIATLFGAWKYPNQTGSWRLVHLGKVSSWVLLVIVSFLIVATLKQIKERKEADEVRVSESK
>CP025689.1|QAA26364.1|2633054_2633810_-|isoprenyl-transferase
MKTSFIDKKQSEDRISCLGDNKLNHIAIIMDGNGRWAQKRGMPRVAGHKEGLTTVVKVVKSAVKCKVKYLTLYTFSTENWKRPKSEIDFILKLPMEFLNRYLPELIANNVRIETIGDVAYLPVYTRKALQYATKRTRNNDGLQLNFALNYGSRHEILLAMKEMYLDINHAKLSLDNVDEQLFSQYLNTAGMPEPDLLIRTGGEKRLSNFLLWQLAYTEFWFTDVLWPDFSEEEFMRALDEYQQRKRRFGGI
>CP025689.1|QAA26363.1|2632161_2632926_+|ABC-transporter-ATP-binding-protein
MVATGQITFNNLRKVFPPRTETSSPVEALHHVNAEVEPGEFIALIGPSGCGKSTLLRLLAGLDQPSQGKILVDGNLVERPSRERGLVFQDPTLYPWLTIEQNVGFGPKLAGEYREKRQSIHEFIELVGLKGFEKNYPYELSGGMQQRVALARTLINYPKVLLFDEPFGALDAFTRMKMHDELLKIRERTNITMVMVTHDVEEAVYLADRVFTMTPRPAILKKIVDVNLPRPRRRDSTAFIKKKEEILDILNFTA
>CP025689.1|QAA27066.1|2631205_2632168_+|taurine-ABC-transporter-permease-TauC
MTQIKDRHIGRAYFASIAIALTLIAQIVIPKSDTLITKALPWYTGLLVIALAITTILAIYYTFFGGLKRFVFKSYFIGAAFLALGLYNLVTLKFTLLKPVFFPAPERIIDVLIVDSGFLLKCLLHSAQLLAYGLGIGIITGLATGILIGWYSSWNYWLEPIVKSVGPIPSTAFIPVALSAFATSYQAAVFLIALASWFPIAVLTQSGVVNVKKTFFEVADTLGATDFQKIFHVAVPGALPNIFVGIFNGTCGAFLTLMSAEMIGVRYGIGWYINWQREIMSYANVYAGLVVIAVSFSLMIAILFKIRDYVLRWQKGIIKW
>CP025689.1|QAA26362.1|2629571_2630609_+|ABC-transporter-substrate-binding-protein
MTKKSKTNRLTKWLLYVGVAVIVLIAAVFSVSHITNKKSAATKKDDNYVLKLADSSGLCEAPQQIAIEKGIFKKYGINYKNVKIGDLSGTEALTAGKVDATNSLLASIVQPLTNGAELKITTGLHTGCLQILVGKNSKIKSVKDLKGKKIGVGTVAGSAATFAKRVLSYNGLHVATKNSDVQFIAYDSASLPIVLNKGQVDAIAVGDPDTQIAIKNYGFKSLASSATTEPFKDEYCCVAYVSNKLAKEHPEIARKFTLALQEAAQWIAKNQSNSVHIQTEKKYIAGEEKTNLSALETYQWEPSYDGAKKAFKQTADSLQDIGIISKDVDTQALTDHSFLKVKGIH
>CP025689.1|QAA26370.1|2644757_2647271_-|pyridine-nucleotide-disulfide-oxidoreductase
MANATTQIHESGGPIVKQRIIIVGGVAGGASVATRLRRLSEENEIVMYEKGAYISFANCGLPYYVGGTIREKDALLVESVENMVKEFNVDVHNNTEVIDIEPEKHIITVKDVLNGEISTDHYDRLILSTGAKPIVPKIPGLDEADHVFSVRNIPDVARIKNYIDSDNVRKAVVIGGGFIGLEMTENLVELGLAVTLVEASPQVMAPLDFEMAQFVHEQIEMHGVTLILNDGVAQFSNNGRTLVLSSGEEIDTDLTVMAIGILPDSALAQKAGVKTGIKSAIVVNEHFETSVPDIFAIGDVIEVTDFVTGMPTLIPLAGPANRQGRFLADYLNGLEAKNPPVQGTAVAKVFALTVATTGKNERLLKQAGVVCHVVHLHPNSHAGYYPGAAPIELKVIYDDQGKILGAQAIGTEGADKRIDMISAVMRLNGSVEDLQLIEVAYAPPYASAKDPVNYAGYLAADQRQGLVKTIEWHEVDALIGKQAYFLDVRESFELAAGKISGSHHIPRGELRGRIEELPKDQPIYVYCSVGLRGYNAARILALNGFDVYNLDGGLKTYEQAKYETGHMKVQPRTADQGESFSTMVQHGTQAAKIVVDACGLQCPGPILKVKQSMEKLNEGDVLKVQASDFGFHKDIVAWADATGNQLLKNNIVGNKVVATLMKGAKDSHDDAQQTLQTASNNGGATTMVVFDGDLDKAIATFIIATGAAAMGKPVTLFFTFWGLNIIKRQAHAKISKSGTDKLFGMMLPKNADHLPLSRMNMAGMGPKMIKKVMADKNVDSLAVMIERAKQLGVKMVACTMSMELMGVAREEIIDGVEFGGVASYLGEAAKSNVNLFI
>CP025689.1|QAA26371.1|2647313_2647547_-|glutaredoxin-family-protein
MNEITVYTTNTCPYCHMVKNFLSEKGMLFKEVNVQQDPAAGQRLVETTGQMGVPQTNVNGQWVLGFDPSRIMSLIHE
>CP025689.1|QAA26372.1|2647834_2648137_-|sulfurtransferase
MYEELTPEEVERLIRNHTPVSIIDVREPFEFAEGHIPRAINISVNEIQNRIGEINKEQEHVMVCHSGNRSDVAYAILSASGFKVKNMAGGMMNWHGPIEC
>CP025689.1|QAA26373.1|2648213_2648534_-|rhodanese-like-domain-containing-protein
MNCLFFCKPKITKISTSELKEAYLPNKKGKYFLDVRTKPEFSSRSIPGFINIPLQTLHNHLNKIPKEKEVVVICQSGMRSSVACKLLKKAGYEKVTNVRGGMNRWI
>CP025689.1|QAA26374.1|2648581_2648845_-|metal-sensitive-transcriptional-regulator
MEYTAQMKNRLKRIDGQIRGILNMMEQGEDCRSVVTQMTAARTAMDRALGLVIGKNLEACLREQIESGGGSAESIINEAVQMLVKSR
>CP025689.1|QAA26375.1|2649166_2649472_+|type-II-toxin-antitoxin-system-antitoxin,-RelB/DinJ-family
MTRTSNIFARVEPEIKEQAEQVLKQLGIPMSNAISLFLRQVVLQRGIPFDIKLSENKPLTFESLNEKTFNDEIEKGLADLTAGRITSADRVAEKMRQDYGK
>CP025689.1|QAA26376.1|2649720_2650071_-|DUF2200-domain-containing-protein
MKNERVYKMAFSRVYPLYIQKAERKGRSKSEVDAVICWLTGYDDAGLEEQIDKNADFETFFADAPQVNPNAVKIKGVICGHRVEDIEDPLMQKIRWLDKLVDELAKGKSMEKILRS
>CP025689.1|QAA26377.1|2650229_2651192_-|tRNA-dihydrouridine(20/20a)-synthase-DusA
MIDNFWHDLPRPFFVLAPMEEVTDVVFRHVVRAAAIPDVFFTEFTNTESYCHPEGIQSVRGRLTFTEDEQPIVAQIWGDKPEHFRRMSIGLAKQGFRGVDINMGCPVPNVTANGMGSGLILRPEIAADLIQATKAGGLPVSVKTRLGYTDVDEWRNWLTHLLKQDIANLTIHLRTRKEMSKVDAHWELIPEIKKLRDQVAPDTLLTINGDITDRQTGLKLADQYGIDGLMIGRGIFTNPFAFEKEPKDHSSQELLNLLKLHLDLYDQYSEELELRPFTALHRFFKIYVRGFRGASELRNQLMSTKSTDEVRTLLDHFVRE
>CP025689.1|QAA26378.1|2651588_2652497_-|transposase
MSIDHDRRFKVLLHEFFDEFLEAFFPKIYQALDLSEKKFLSEELFADMVEGDKKRADVIAETKLKSKKDVILIVHLEAQNYYQDDFSERMYIYYSMIYLKFRKPVLPIAIFSYDGVRDEPDEFVIKVPHLMVVSTFHFLKLELSRMSWRKFMNSNNPAAAALMSKMNYSKRERVQVRLAFIRQMITMHLGEARESMINGFFETYLQLEKEEVDQLMDQAKKLPEEIREEVLKWPNSFYDRGKKEGIEQGIEQGIEQGIEQGERKAKEQFARKLLQKGMRHAEISELTGLSDKEIIKLEDHNG
>CP025689.1|QAA26379.1|2652795_2654409_+|multicopper-oxidase-family-protein
MNKLLFVAVAGFALLLITACSANTENSNKAIDQQEAGSEFATSQSPQIIKGPNITLVAKKGTQKLSSGVTVPVWTFNGSAPGPEIRVKKGEKVRVTLKNELPSPVSIHWHGYPVPNKMDGVPGVTQDAVAPGKNFTYSFVADKAGTYWYHSHQDSVNQVDRGLYGAFVVEEPEEKYDRDYTLMLDEWVTDKRQINRQIASMTQGNSQKENKDSGGMNHMPGMNRNDSDHDRDRMDMGNIDMSGNMMKNNMSMYDLYTINGKSGHSVKPLDVKKGDNVRLRFINAGYLPHDIHIHGHSIRVIATDGQPINNPQAVKNQVIPVAPGERYDVSFIADNPGKWYIEDQGTTKAADGMKTVIDYAGSKTTTDRPNPDSSLPAINFDQYGANAKPTFTLNQKYDVNYTMDLNAGMDNNGMIYTINGKTFPNFDPIKVRRGDRVKVKLVNRDPMNNHPMHLHGHFFQVLSKNGKPVTGSPIYKDTLNVKPGETDEVAFLADNPGNWLFHCHDLHHASAGMVTEVNYTDDHSNDVTDPSNDNKSD

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Crispr_ID: CP025689_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025689_3

2718553-2718617

Orphan

Consensus_repeat	Method
CACTTTAGCGTTTTTATCAGTCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025689_3

>merge|CP025689|3|2718553-2718617|CRISPRCasFinder
CACTTTAGCGTTTTTATCAGTCAGTTCGACAAGTTTATCAACCACTTTGGTGATTTTATCAGTCA

>CP025689|3|2|2718553-2718617|CRISPRCasFinder
CACTTTAGCGTTTTTATCAGTCA	GTTCGACAAGTTTATCAAC
CACTTTGGTGATTTTATCAGTCA

Protein	Signature genes	Signature genes Name	Protein_function
CP025689.1\|QAA26440.1\|2720318_2721497_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|340887
CP025689.1\|QAA26442.1\|2723061_2723280_-\|hypothetical-protein	unknown	unknown	unknown
CP025689.1\|QAA26439.1\|2718635_2719634_-\|NERD-domain-containing-protein	unknown	unknown	gnl\|CDD\|377990
CP025689.1\|QAA26446.1\|2727829_2728564_-\|1-(5-phosphoribosyl)-5-amino-4-imidazole--carboxylate-carboxylase	unknown	unknown	gnl\|CDD\|224605
CP025689.1\|QAA26444.1\|2724926_2725760_-\|TIGR00268-family-protein	unknown	unknown	gnl\|CDD\|238948
CP025689.1\|QAA26432.1\|2713126_2713927_-\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|372253
CP025689.1\|QAA26437.1\|2717342_2717924_+\|hypothetical-protein	unknown	unknown	unknown
CP025689.1\|QAA26435.1\|2715359_2716349_-\|biotin-synthase-BioB	unknown	unknown	gnl\|CDD\|235755
CP025689.1\|QAA26443.1\|2724574_2724937_-\|hypothetical-protein	unknown	unknown	unknown
CP025689.1\|QAA26436.1\|2716367_2716922_-\|biotin-transporter-BioY	unknown	unknown	gnl\|CDD\|224187
CP025689.1\|QAA27073.1\|2725807_2726524_-\|glycerol-transporter	unknown	unknown	gnl\|CDD\|223653
CP025689.1\|QAA26438.1\|2717931_2718429_-\|GNAT-family-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP025689.1\|QAA26441.1\|2721912_2722938_-\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	unknown	unknown	gnl\|CDD\|225911
CP025689.1\|QAA26429.1\|2710241_2710802_-\|ArsR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238042
CP025689.1\|QAA26430.1\|2711362_2712367_+\|lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|240662
CP025689.1\|QAA26433.1\|2713923_2714823_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224054
CP025689.1\|QAA26445.1\|2726557_2727802_-\|TIGR00299-family-protein	unknown	unknown	gnl\|CDD\|376691
CP025689.1\|QAA26434.1\|2715065_2715293_+\|small-acid-soluble-spore-protein-Tlp	unknown	unknown	gnl\|CDD\|179658
CP025689.1\|QAA26431.1\|2712508_2713126_-\|TetR/AcrR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224228
CP025689.1\|QAA27072.1\|2723227_2724436_-\|IS91-family-transposase	unknown	unknown	gnl\|CDD\|377437

Protein	Function_ID	Function_description	E-value
CP025689.1\|QAA26440.1\|2720318_2721497_-\|MFS-transporter	gnl\|CDD\|340887	cd17329, MFS_MdtH_MDR_like, Multidrug resistance protein MdtH and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MdtH and similar multidrug resistance (MDR) transporters from bacteria and archaea, many of which remain uncharacterized. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. MdtH confers resistance to norfloxacin and enoxacin. MdtH-like MDR transporters belong to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.55272e-16
CP025689.1\|QAA26444.1\|2724926_2725760_-\|TIGR00268-family-protein	gnl\|CDD\|238948	cd01990, Alpha_ANH_like_I, This is a subfamily of Adenine nucleotide alpha hydrolases superfamily. Adenine nucleotide alpha hydrolases superfamily includes N type ATP PPases and ATP sulphurylases. It forms a apha/beta/apha fold which binds to Adenosine group. This subfamily of proteins probably binds ATP. This domain is about 200 amino acids long with a strongly conserved motif SGGKD at the N terminus.	2.74885e-92
CP025689.1\|QAA26439.1\|2718635_2719634_-\|NERD-domain-containing-protein	gnl\|CDD\|377990	pfam08378, NERD, Nuclease-related domain. The nuclease-related domain (NERD) is found in a range of bacterial as well as archaeal and plant proteins. It has distant similarity to endonucleases (hence its name) and its predicted secondary structure is helix - sheet - sheet - sheet - sheet - weak sheet/long loop - helix - sheet - sheet. The majority of NERD-containing proteins are single-domain, but in several cases proteins containing NERD have additional domains which in 75% of cases are involved in DNA processing.	1.2646e-14
CP025689.1\|QAA26446.1\|2727829_2728564_-\|1-(5-phosphoribosyl)-5-amino-4-imidazole--carboxylate-carboxylase	gnl\|CDD\|224605	COG1691, COG1691, NCAIR mutase (PurE)-related proteins [General function prediction only].	1.7466e-92
CP025689.1\|QAA26432.1\|2713126_2713927_-\|ABC-transporter-permease	gnl\|CDD\|372253	pfam12679, ABC2_membrane_2, ABC-2 family transporter protein. This family is related to the ABC-2 membrane transporter family.	3.22347e-21
CP025689.1\|QAA26435.1\|2715359_2716349_-\|biotin-synthase-BioB	gnl\|CDD\|235755	PRK06256, PRK06256, biotin synthase; Validated.	8.89054e-170
CP025689.1\|QAA26436.1\|2716367_2716922_-\|biotin-transporter-BioY	gnl\|CDD\|224187	COG1268, BioY, Uncharacterized conserved protein [General function prediction only].	3.32316e-36
CP025689.1\|QAA27073.1\|2725807_2726524_-\|glycerol-transporter	gnl\|CDD\|223653	COG0580, GlpF, Glycerol uptake facilitator and related permeases (Major Intrinsic Protein Family) [Carbohydrate transport and metabolism].	8.87086e-52
CP025689.1\|QAA26438.1\|2717931_2718429_-\|GNAT-family-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	4.70886e-16
CP025689.1\|QAA26441.1\|2721912_2722938_-\|HoxN/HupN/NixA-family-nickel/cobalt-transporter	gnl\|CDD\|225911	COG3376, HoxN, High-affinity nickel permease [Inorganic ion transport and metabolism].	2.72582e-130
CP025689.1\|QAA26429.1\|2710241_2710802_-\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.33411e-09
CP025689.1\|QAA26430.1\|2711362_2712367_+\|lactate-dehydrogenase	gnl\|CDD\|240662	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains. D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain.	2.23041e-178
CP025689.1\|QAA26433.1\|2713923_2714823_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224054	COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms].	3.84257e-85
CP025689.1\|QAA26445.1\|2726557_2727802_-\|TIGR00299-family-protein	gnl\|CDD\|376691	pfam01969, DUF111, Protein of unknown function DUF111. This prokaryotic family has no known function.	0
CP025689.1\|QAA26434.1\|2715065_2715293_+\|small-acid-soluble-spore-protein-Tlp	gnl\|CDD\|179658	PRK03830, PRK03830, small acid-soluble spore protein Tlp; Provisional.	3.67724e-17
CP025689.1\|QAA26431.1\|2712508_2713126_-\|TetR/AcrR-family-transcriptional-regulator	gnl\|CDD\|224228	COG1309, AcrR, Transcriptional regulator [Transcription].	9.37098e-13
CP025689.1\|QAA27072.1\|2723227_2724436_-\|IS91-family-transposase	gnl\|CDD\|377437	pfam04986, Y2_Tnp, Putative transposase. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801. This is a rolling-circle transposase.	3.03983e-51

>CP025689.1|QAA26438.1|2717931_2718429_-|GNAT-family-acetyltransferase
MVTFRVLTAEDAEQYQKLRLEALIKNPEAFASDFDTERSKTISQIRDDLSKKHVMTVGGFDGEKLVAIASLDREKLPKMEHRANLTSVYVSDEYRGQRLSKRIINYIIEQVKKQGISKIYLYVMTHNEPAIRAYKKMGFTIIGEDPDAMKEDHGFVAEYRMVKYI
>CP025689.1|QAA26437.1|2717342_2717924_+|hypothetical-protein
MYAYILLTHAKTLPSALIKLWTGDAYTHAALALDTPQHMYSFGRKGKYNFLNGGFTENELKDQPADLRLMILRLTISPAQHRQLACLIRSFRNRRNQLHYNFSGILGLMLQKEIHSQDRFFCSQFVAAVLAECGICAFPKPCCFIKPADFAQIDEANVLFEGLISDYFAMSQDLLDGDVTLQMMQPRTVSPLY
>CP025689.1|QAA26436.1|2716367_2716922_-|biotin-transporter-BioY
MKTRSITLVSLFVAVMIAFGALPTLVIPFIPVPFTFQMIGVMLVGSILGARKGLVAMLVFIALAAAGVPVLSGYRGGLGVLLGPTGGYILAWPLATFVIGLITDYINTKKWALFRYYLAILAGILIIYFVGVPWFAFYNHLPLLGVAESNLPLLLLDLVKAGAAAVVACRLKQRLPFLKKSKLV
>CP025689.1|QAA26435.1|2715359_2716349_-|biotin-synthase-BioB
MKWYHLAQRVIGGYACTRSEAQEMLRVADDETLDLVYGAYQLRRHYYGTAMKLNLIINAKSGRCAENCAYCSQSIYAETSIDAYPLVSEDVIVQGARQAYENQIGTYCIVMSGRKASPREVRTVCSAVKKIKKEMPIKICACLGLINGEQAKALKAAGVDRFNHNLNTNASHYDQIATTHHYQDRVATIKAVKNAKISPCSGVICGMGETDADIIDMAYALKELDADSIPINFLNPIPGTKLENMDELNPNRCLKILAVFRFINPTKEIRIAGGREVNLRSSQNLGLYIANSIFIGDYLTTKGQDTTKDYQMIEDLGFSIETKAVETKI
>CP025689.1|QAA26434.1|2715065_2715293_+|small-acid-soluble-spore-protein-Tlp
MAKPDDRSDNWGKIAHNIGNTLQNINETEDYLKAHGDKVSEEEKRQLLEKNQRRVESVHGLREEIKDEARFSKTH
>CP025689.1|QAA26433.1|2713923_2714823_-|ABC-transporter-ATP-binding-protein
MPVIELSHISKRFGKFVAVNDVSFTVEKGEFFGFIGPNGAGKSTTMNMMLNFIKSSGGKIKLLGKNVPEHDLDVKKQIGYVPSDVRFYPQLRVRDLFRYTLDFHHMKGDSAELKRYCDLFQIDPQKKFGDLSLGNKKKVALVCALIHHPELIIMDEPTNGLDPLIHARLFRVLKEKQEQGVTIFLSSHNLKEVEDYCSRIAFIRSGKLIGVEDLTQVNQNVKVITVKADQLPIAVMEKIGATCVKKTDHEARFTYEGNMAQLFSTLSNLSPQLDDVTVANRDLEEQFMAMYERQEGERL
>CP025689.1|QAA26432.1|2713126_2713927_-|ABC-transporter-permease
MTLFRLECKTHCKTLLIWMIVVGILTLGLVSLFPAMKDMGLDQMKAMPKDMMKAFNLSDLGMLTTIKGYFGYEYQYVMLATGIFAAMLGTNALSREESEGTISYLFSQPIPRIAIVGEKMLANTVLYTLYWLVSMAIAYLVCLMFKETGASVSDLFDGFTQLTFAGWVMGLTFLSVGFLLSAFLSSNKSATSLSLGLVFLTFILGVVGKMNNDFKGLLYASPVDAALPSTIFKSGIEWNYIVIDLVVIVVAGLLTFWIYRRKDLNV
>CP025689.1|QAA26431.1|2712508_2713126_-|TetR/AcrR-family-transcriptional-regulator
MEESKERAILTAAIHEFAVKGFDRASTNQIAKASMVSKGLIFHYYESKEKLFEASVNYALEISETELNYTQWNFDGDLIEKLKHYCTLEFQFFHDYPDVYQMLMAAFTRPPKELSDKMTRLLRELTSVAPQFFKKIVTNLDLKEDVDADVLQAVFESHYTYYMTRAMAYSQTHPDSTVEELKPIINQFLAMLKMSLRGLLKSDSE
>CP025689.1|QAA26430.1|2711362_2712367_+|lactate-dehydrogenase
MKLFMYGVQAHEKEIIRAWADAHAIDIETTADFLSEKTVDRAKGYDGICIQQPVPLGAAKLYAALKSYGIKQIATRTAGYDMIDLQEAERNELIVTNVPAYSPYAVAELAVTQAMQLVRHVSQFQKRIADNDFRWDGLMSREIRSMTVGIVGTGRIGVTAAQLFKGLGAKIIGFDQYPNDRLKDLIEYRSSLEEVLKEADIVSLHTPLFDSTRHMINARTLKLMKKSAYLINIARGALIDTEALIDALESGEIAGAALDTFENETVINKKLSGQSLNDPLLEKLIAMDQVLLTPHVGFFTETAIRNIVDGALNSVLEVLQTGTSKNRVKPAVTQ
>CP025689.1|QAA26429.1|2710241_2710802_-|ArsR-family-transcriptional-regulator
MEDVFYLSNLDQLKVLSDPLRVKIIWSLSDHEKTGKILSEELHMAPSKVRYHLTELERVGLIRVVRTELKNGIQQKFYQPIAENISLEKVASLLNGETVPDLDNVLKENAFCALEALRKNIARSDLQARKFLFIPFQARLTDHEAKVVEQKIKAIYTYMQSKSNRSTQEKTKTFYTSLSFFPTQDQ
>CP025689.1|QAA26439.1|2718635_2719634_-|NERD-domain-containing-protein
MYVKPIQVPFHVLQYEALVRRLNPCAAHEDIRSLYKRAIAGYRGERSMSYPLCYLPEEDFRIFHNLRLYDGIHYFQIDFLALCERFALILEVKNIIGKLTFDTAMLQLIRELDDTLDIYDDPISQANHLTDSLRQWLSKRGVFLPIRNHVVIASAAQIQVTDLNNDQIKKIVRRANLKSELLKINKQFTEAHLSAGELDKIAANLLAAHQKKMIQPFKTFKIQSEQIKKGVQCPNCGATPVEKVKQRWICRACDHHARFAYLTALRDYFLIYGPAITNSQCRDFLNLGSESTTRRLLHRTALHFDGNKKSRIYYLSEEILDEKANWSINLSK
>CP025689.1|QAA26440.1|2720318_2721497_-|MFS-transporter
MFVRSFNHNIRYNYIYNFCSFFGVTALWVLYLTHRGMSLVEVGLLESIFHVSSFLFEVPSGALADRLSYRAVLILGRVCAMISSIILIFSHDFLWFAVGFIISAWSYNLNSGTTDALVYESLRCLNQEKRYIKVSANVNALYELADTLGIFVAGWFVTAYFEGVYWIQIAISMLAILSVLMMREPRKSQRKEEKVTSYFAILKNAALFLKENGQLRFLMLFFALFEGVAATYYFYFQSLVDGYGFKGYQISLLMIASAVFQIIGAKISPQIERWAGQANLILYFSALLCGLLILTFVNQLPLLIGCFITLNTLVSVSQPIFSNYFNALIPSSSRATLLSVSSMLFSVAMIVLFPLSGWLIEQLRFTVSFGAMGMALGLVMVVLTIVMKRRAR
>CP025689.1|QAA26441.1|2721912_2722938_-|HoxN/HupN/NixA-family-nickel/cobalt-transporter
MKGRIDVLKKSLPYYIGSLLLHLLGFSLLIFVARTNPFILGLGMVAYTLGLRHAFDADHIAAIDNTVRKLMQQNQNSMGVGFYFSLGHSSVVFLMAAALAFSVHWAQQHLPLLSHVGGVIGATVSGSFLLVIAFINLFILIDLQKLFLRLKQHAFDQKQFDQLLQSRGFLSRMFRPLFAFISQSWHVLPLGFLFGLGFDTATEISLLALSAESARAHMSIAAVLALPLLFAAGMNVMDTTDSVMMTRAYRWALDTPVRKVYYNLTVTAISVLAALLIGSIELSQVVSEQFHLQGGFWNWVQAIDLNWMGYGLIFLFLAVWLISYLIWKIFRIDRRWSQNVL
>CP025689.1|QAA26442.1|2723061_2723280_-|hypothetical-protein
MQKTNKKTVRFFCLSCHEKEEIPTQIVREMDLMDGGDSIIPPRFSCEQCGGEMYPEYYKGVHGQEYRIKDYL
>CP025689.1|QAA27072.1|2723227_2724436_-|IS91-family-transposase
MRPIVIKEVEKFKDCGNLKKGFKLLVCEGCHDVRKVPFRCKGRFCTTCSIGESEEWSRLLAEDVLQVNHRHVIFTIDEGLRDVFLLHRHLLKPLMDEAARLIKNFFQKKAKVTPGIIAGLHTFGSQLNFNPHVHMLVSMGGITRKGEWKSYDFIPFKMLRKQWQTVVLKLIRKHLTAKEKENVQPLLQKAYLQNGEGFYVHAPRQRGHVKEQLRYIGRYIRRPAIGLNRIEDYDGHNVTFTYKDKRDNQEKRLTLSVEAFIARLIRHIPDEQFKTIRHYGMYSRKNKKLSKKLLMAWQKVTKRWVIKVNKVLRRRTWRERTIATGNKDPHICPKCGNYYEYKGEVCLEEGRLVIKVALGRTAREYLEEEIRYLNQKTTQIGQKENRAKNKQKNRTVFLPIVS
>CP025689.1|QAA26443.1|2724574_2724937_-|hypothetical-protein
MFPERSPIACTQKRTATFSNLERAAVFSNRIRKYRILPRLQTNRPVSWPRIKAEGLWRLRDRALLMRASETPQIPGLSEEARGAPAASEQPKRRFSTEKTRIHHTWLEIKDQAQLGFSHR
>CP025689.1|QAA26444.1|2724926_2725760_-|TIGR00268-family-protein
MHTLTEKTQMLTDLLKKMDRVVVGFSGGIDSTLVLKMALDTLGKDRVLAVVANSELFTDEEYEKAVALAKALGAEVMGTQLNYLADEHIKHNTPDSWYYAKKCFYARMNVIAQEQGFNYVLDGMIMDDNSDFRPGLRARTEAGARSVLQEAGFYKTDVRALAKGIGLTNWNKVSSCSVSSRFPYGTTLTPEKIDQVMASEAYLRDLAFPVVRVRYHGEIARVEVPAERLSDLLERSGEVSAKLTEFGFRYVTLDLSGFRSGRMNETLSEEERKAFVS
>CP025689.1|QAA27073.1|2725807_2726524_-|glycerol-transporter
MHQLLAEFLGTALMIVFGVGVHCCEVLNTSKYQHSGHIFAITTWGFGITVSLFIFGAVNINPAMTLAQAILGNIPWANVIPISLAEVLGGVFGSIVVFIAYYDQFKASESINRVAIRNIFSTNPNVRNLPRNFFVEFIDTFIFITAILAIAGATTKAPALLPIGVGLLVWAIGMGMGGPTGFAMNLARDMGPRIAHAMLPIPGGKADNDWQYGILVPGIAPFLGAACAALFARGFLGL
>CP025689.1|QAA26445.1|2726557_2727802_-|TIGR00299-family-protein
MMKTLYLDAFSGISGDMFIGALLDLGVDFDQFKAELAKLNVDGYQLHVERLSKSSIYGTRFDVQLTHEKDHGFIESHHDPHYEHHHQDAVRHLSDIAALIAASTLSEKIKQQSLAVFTEIAKAEAAVHHMPLEAVHFHEVGALDSIVDIVGCFVALDLLKVDEVRASELTDGSGFIHVAHGEMPVPVPAVMQMRIGTNIPIKQRTDIQTELITPTGMGLVKALVRQFGPIPEAQILLKSGYGFGKRDTGAFNALRVLLFDEKKSMQTVSSDQDSVLLIEANLDDEDGESLGFAMDLLLEAGAFDVFFTPIFMKKNRPAIKLSVLCAPAERDRFASMLMKHTSTIGVRYQRMQRVIMKRHFKTVETRFGPIRVKVASHGDLVKQMAEYDDCAKAAREYGTSLETVKQEVDRLLNS
>CP025689.1|QAA26446.1|2727829_2728564_-|1-(5-phosphoribosyl)-5-amino-4-imidazole--carboxylate-carboxylase
MKRDPFNETGCLKPEHGEAGQALQGNTFADLGFAKVDLSREQRNGYPEVIYGEGKTAEQIIGIIQAMRKQTVNILCTRLSSDKFETIKKATPDAVYYKTARCALVNRAEVKQTQSYIAIVTAGTSDVPIAEEAAVTAEAYGNRVARIYDVGVAGIHRLFARLDVIRGAKVVICIAGMEGALASVVGGLIDKPLIAVPTSVGYGTNLKGVTALLTMLNSCASGITVVNIDNGFGAAYSASMINHL

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	CP025689.1	1346276-1346301	2	0.923

1. spacer 2.2|2644405|26|CP025689|PILER-CR matches to position: 1346276-1346301, mismatch: 2, identity: 0.923

aagtaattttttcattcattttccaa	CRISPR spacer
aagcaattttttcattcattttctaa	Protospacer
***.*******************.**

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP017367	Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-4, complete sequence	19329-19354	3	0.885
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP024656	Bacillus cereus strain MLY1 plasmid pMLY1.2, complete sequence	18187-18212	4	0.846
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	58006-58031	4	0.846
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP011154	Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence	488092-488117	4	0.846
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP011152	Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence	58798-58823	4	0.846
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP045607	Bacillus cereus strain SB1 plasmid p1, complete sequence	378535-378560	4	0.846
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	CP020755	Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence	573371-573396	4	0.846
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NC_020385	Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence	234479-234504	4	0.846
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP021062	Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence	204475-204500	4	0.846
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	CP002965	Emticicia oligotrophica DSM 17448 plasmid pEMTOL04, complete sequence	25861-25886	5	0.808
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NC_010844	Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' plasmid p74, complete sequence	59968-59993	5	0.808
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NC_010846	Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' plasmid p74, complete sequence	59741-59766	5	0.808
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP018777	Staphylococcus condimenti strain StO 2014-01 plasmid pStO2014-01, complete sequence	17473-17498	5	0.808
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP020744	Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence	173190-173215	5	0.808
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	141791-141816	5	0.808
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP039041	Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence	165262-165287	5	0.808
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP048758	Campylobacter jejuni strain ZS006 plasmid pCJ6K-02, complete sequence	1403-1428	5	0.808
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	MT074460	Salmonella phage bux, complete genome	4769-4794	5	0.808
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP011282	Enterococcus faecium strain E39 plasmid p1, complete sequence	90137-90162	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP025426	Enterococcus faecium strain SC4 plasmid p1, complete sequence	250149-250174	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP018832	Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence	144317-144342	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP040369	Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence	230180-230205	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP040906	Enterococcus faecium strain FB-1 plasmid punnamed, complete sequence	79240-79265	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP020485	Enterococcus faecium strain CFSAN059070 plasmid unnamed1, complete sequence	65736-65761	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP013995	Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence	7432-7457	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP014450	Enterococcus faecium strain ATCC 700221 plasmid unnamed1, complete sequence	185817-185842	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP018073	Enterococcus faecium strain VRE001 plasmid unnamed3, complete sequence	59321-59346	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP027518	Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence	229027-229052	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP027507	Enterococcus faecium strain AUSMDU00004055 plasmid unnamed1, complete sequence	202559-202584	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP027502	Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence	117712-117737	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135298	Enterococcus faecium isolate E7429 plasmid 2	94925-94950	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135288	Enterococcus faecium isolate E7199 plasmid 2	104657-104682	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135333	Enterococcus faecium isolate E7471 plasmid 3	98266-98291	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135340	Enterococcus faecium isolate E7356 plasmid 2	101362-101387	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP025756	Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence	27126-27151	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP027513	Enterococcus faecium strain AUSMDU00004028 plasmid unnamed1, complete sequence	113739-113764	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135279	Enterococcus faecium isolate E6975 plasmid 2	199310-199335	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135236	Enterococcus faecium isolate E7067 plasmid 2	137161-137186	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135198	Enterococcus faecium isolate E6055 plasmid 2	133759-133784	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135182	Enterococcus faecium isolate E1774 plasmid 2	84392-84417	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP017798	Enterococcus faecium strain E243 plasmid unnamed1, complete sequence	105659-105684	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135483	Enterococcus faecium isolate E4456 plasmid 2	111588-111613	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135476	Enterococcus faecium isolate E8423 plasmid 2	228193-228218	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135204	Enterococcus faecium isolate E7171 plasmid 2	151467-151492	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135365	Enterococcus faecium isolate E8195 plasmid 2	115722-115747	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135220	Enterococcus faecium isolate E7040 plasmid 2	136075-136100	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NC_021987	Enterococcus faecium Aus0085 plasmid p1, complete sequence	40329-40354	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135345	Enterococcus faecium isolate E8202 plasmid 2	96162-96187	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135352	Enterococcus faecium isolate E8014 plasmid 2	208604-208629	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR134106	Enterococcus faecium isolate E6043 plasmid 2	134656-134681	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LN999988	Enterococcus faecium isolate EFE11651 plasmid II, complete sequence	178190-178215	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP040741	Enterococcus faecium strain VRE1 plasmid pVRE1-1, complete sequence	78980-79005	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP014530	Enterococcus faecium strain E745 plasmid pl1, complete sequence	117632-117657	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_AP022342	Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence	114566-114591	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP040704	Enterococcus faecium strain HOU503 plasmid p1, complete sequence	182416-182441	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP040873	Enterococcus faecium strain DB-1 plasmid punnamed1	12511-12536	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP040876	Enterococcus faecium strain DB-1 plasmid punnamed2	108594-108619	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP044275	Enterococcus faecium strain V2937 plasmid pHVH-V2937-1, complete sequence	107012-107037	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP017793	Enterococcus faecium strain E240 plasmid unnamed1, complete sequence	105659-105684	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP035655	Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence	225594-225619	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP035661	Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence	263686-263711	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP035667	Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence	263552-263577	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP035649	Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence	225662-225687	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LR135308	Enterococcus faecium isolate E7240 plasmid 2	102825-102850	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP040237	Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence	115953-115978	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP018066	Enterococcus faecium strain E1 plasmid pE1_230, complete sequence	90100-90125	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP018129	Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence	100183-100208	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_AP019409	Enterococcus faecium strain SMVRE20 plasmid pSMVRE20L, complete sequence	83607-83632	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP016164	Enterococcus faecium strain ISMMS_VRE_11 plasmid ISMMS_VRE11_p1, complete sequence	108913-108938	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP018827	Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence	144317-144342	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_CP012461	Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence	93117-93142	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	NZ_LT598664	Enterococcus faecium isolate Ef_aus00233 plasmid 2	42230-42255	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	MT074468	Salmonella phage rutana, complete genome	4329-4354	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	MN694486	Marine virus AFVG_250M318, complete genome	5041-5066	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	MT074459	Salmonella phage bastian, complete genome	5312-5337	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	MK972709	Salmonella phage SE20, complete genome	32454-32479	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	MT074463	Salmonella phage gmork, complete genome	3910-3935	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	MT074467	Salmonella phage falkor, complete genome	5802-5827	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	MK972707	Salmonella phage SE24, complete genome	8117-8142	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	MH370386	Salmonella phage S147, complete genome	102983-103008	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	MK972704	Salmonella phage SE19, complete genome	1858-1883	6	0.769
CP025689_2	2.2\|2644405\|26\|CP025689\|PILER-CR	2644405-2644430	26	MK288021	Bacillus phage pW2, complete genome	27818-27843	6	0.769
CP025689_1	1.2\|892756\|36\|CP025689\|PILER-CR,CRISPRCasFinder,CRT	892756-892791	36	NZ_CP039697	Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence	440915-440950	7	0.806
CP025689_1	1.3\|892822\|35\|CP025689\|PILER-CR,CRISPRCasFinder,CRT	892822-892856	35	MT764845	Ruegeria phage Tedan, complete genome	41334-41368	10	0.714
CP025689_1	1.32\|894730\|36\|CP025689\|PILER-CR,CRISPRCasFinder,CRT	894730-894765	36	NZ_CP032313	Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence	101419-101454	11	0.694

1. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP017367 (Lactobacillus plantarum strain TMW 1.277 plasmid pL1277-4, complete sequence) position: , mismatch: 3, identity: 0.885

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcattcgttttgaaa	Protospacer
*****************.****  **

2. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP024656 (Bacillus cereus strain MLY1 plasmid pMLY1.2, complete sequence) position: , mismatch: 4, identity: 0.846

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcattccttttgccc	Protospacer
***************** **** *

3. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 4, identity: 0.846

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcattccttttgccc	Protospacer
***************** **** *

4. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP011154 (Bacillus cereus strain CMCC P0011 plasmid pRML05, complete sequence) position: , mismatch: 4, identity: 0.846

aagtaattttttcattcattttccaa	CRISPR spacer
atttaattttttcattccttttgcaa	Protospacer
*  ************** **** ***

5. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP011152 (Bacillus cereus strain CMCC P0021 plasmid pRML04, complete sequence) position: , mismatch: 4, identity: 0.846

aagtaattttttcattcattttccaa	CRISPR spacer
atttaattttttcattccttttgcaa	Protospacer
*  ************** **** ***

6. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP045607 (Bacillus cereus strain SB1 plasmid p1, complete sequence) position: , mismatch: 4, identity: 0.846

aagtaattttttcattcattttccaa	CRISPR spacer
atttaattttttcattccttttgcaa	Protospacer
*  ************** **** ***

7. spacer 2.2|2644405|26|CP025689|PILER-CR matches to CP020755 (Bacillus thuringiensis strain ATCC 10792 plasmid pLDW-16, complete sequence) position: , mismatch: 4, identity: 0.846

aagtaattttttcattcattttccaa	CRISPR spacer
atttaattttttcattccttttgcaa	Protospacer
*  ************** **** ***

8. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NC_020385 (Bacillus thuringiensis serovar thuringiensis str. IS5056 plasmid pIS56-328, complete sequence) position: , mismatch: 4, identity: 0.846

aagtaattttttcattcattttccaa	CRISPR spacer
atttaattttttcattccttttgcaa	Protospacer
*  ************** **** ***

9. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP021062 (Bacillus thuringiensis strain ATCC 10792 plasmid poh1, complete sequence) position: , mismatch: 4, identity: 0.846

aagtaattttttcattcattttccaa	CRISPR spacer
atttaattttttcattccttttgcaa	Protospacer
*  ************** **** ***

10. spacer 2.2|2644405|26|CP025689|PILER-CR matches to CP002965 (Emticicia oligotrophica DSM 17448 plasmid pEMTOL04, complete sequence) position: , mismatch: 5, identity: 0.808

aagtaattttttcattcattttccaa	CRISPR spacer
ttttaattttttcattaatttaccaa	Protospacer
   ************* **** ****

11. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NC_010844 (Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)' plasmid p74, complete sequence) position: , mismatch: 5, identity: 0.808

aagtaattttttcattcattttccaa	CRISPR spacer
ttgtaattttttctttcattttcaga	Protospacer
  *********** ********* .*

12. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NC_010846 (Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)' plasmid p74, complete sequence) position: , mismatch: 5, identity: 0.808

aagtaattttttcattcattttccaa	CRISPR spacer
ttgtaattttttctttcattttcaga	Protospacer
  *********** ********* .*

13. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP018777 (Staphylococcus condimenti strain StO 2014-01 plasmid pStO2014-01, complete sequence) position: , mismatch: 5, identity: 0.808

aagtaattttttcattcattttccaa	CRISPR spacer
taattgatttttcattcattttccaa	Protospacer
 *.* . *******************

14. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP020744 (Bacillus mycoides strain Gnyt1 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

aagtaattttttcattcattttccaa	CRISPR spacer
gagtaattttatcattcattttttta	Protospacer
.********* ***********.. *

15. spacer 2.2|2644405|26|CP025689|PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 5, identity: 0.808

aagtaattttttcattcattttccaa	CRISPR spacer
gagtaattctttcattcatttccctc	Protospacer
.*******.************.**

16. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP039041 (Piscirickettsia salmonis strain Psal-072 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

aagtaattttttcattcattttccaa	CRISPR spacer
gattatttttttcattcattttcctc	Protospacer
.* ** ******************

17. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP048758 (Campylobacter jejuni strain ZS006 plasmid pCJ6K-02, complete sequence) position: , mismatch: 5, identity: 0.808

aagtaattttttcattcattttccaa	CRISPR spacer
ggcttattttttcattcatttttcaa	Protospacer
.. * *****************.***

18. spacer 2.2|2644405|26|CP025689|PILER-CR matches to MT074460 (Salmonella phage bux, complete genome) position: , mismatch: 5, identity: 0.808

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcatttatttccgct	Protospacer
****************.****.*

19. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP011282 (Enterococcus faecium strain E39 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

20. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP025426 (Enterococcus faecium strain SC4 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

21. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP018832 (Enterococcus faecium strain ISMMS_VRE_9 plasmid p1_ISMMS_VRE9, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

22. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP040369 (Enterococcus faecium strain VB3240 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

23. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP040906 (Enterococcus faecium strain FB-1 plasmid punnamed, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

24. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP020485 (Enterococcus faecium strain CFSAN059070 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

25. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP013995 (Enterococcus faecium strain 6E6 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

26. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP014450 (Enterococcus faecium strain ATCC 700221 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

27. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP018073 (Enterococcus faecium strain VRE001 plasmid unnamed3, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

28. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP027518 (Enterococcus faecium strain AUSMDU00004024 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

29. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP027507 (Enterococcus faecium strain AUSMDU00004055 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

30. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP027502 (Enterococcus faecium strain AUSMDU00004142 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

31. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135298 (Enterococcus faecium isolate E7429 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

32. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135288 (Enterococcus faecium isolate E7199 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

33. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135333 (Enterococcus faecium isolate E7471 plasmid 3) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

34. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135340 (Enterococcus faecium isolate E7356 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

35. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP025756 (Enterococcus faecium strain AALTL plasmid pEFA-99d7, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

36. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP027513 (Enterococcus faecium strain AUSMDU00004028 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

37. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135279 (Enterococcus faecium isolate E6975 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

38. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135236 (Enterococcus faecium isolate E7067 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

39. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135198 (Enterococcus faecium isolate E6055 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

40. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135182 (Enterococcus faecium isolate E1774 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

41. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP017798 (Enterococcus faecium strain E243 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

42. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135483 (Enterococcus faecium isolate E4456 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

43. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135476 (Enterococcus faecium isolate E8423 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

44. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135204 (Enterococcus faecium isolate E7171 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

45. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135365 (Enterococcus faecium isolate E8195 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

46. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135220 (Enterococcus faecium isolate E7040 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

47. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NC_021987 (Enterococcus faecium Aus0085 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

48. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135345 (Enterococcus faecium isolate E8202 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

49. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135352 (Enterococcus faecium isolate E8014 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

50. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR134106 (Enterococcus faecium isolate E6043 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

51. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LN999988 (Enterococcus faecium isolate EFE11651 plasmid II, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

52. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP040741 (Enterococcus faecium strain VRE1 plasmid pVRE1-1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

53. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP014530 (Enterococcus faecium strain E745 plasmid pl1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

54. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_AP022342 (Enterococcus faecium strain KUHS13 plasmid pKO1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

55. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP040704 (Enterococcus faecium strain HOU503 plasmid p1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

56. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP040873 (Enterococcus faecium strain DB-1 plasmid punnamed1) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

57. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP040876 (Enterococcus faecium strain DB-1 plasmid punnamed2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

58. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP044275 (Enterococcus faecium strain V2937 plasmid pHVH-V2937-1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

59. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP017793 (Enterococcus faecium strain E240 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

60. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP035655 (Enterococcus faecium strain UAMSEF_08 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

61. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP035661 (Enterococcus faecium strain UAMSEF_09 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

62. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP035667 (Enterococcus faecium strain UAMSEF_20 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

63. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP035649 (Enterococcus faecium strain UAMSEF_01 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

64. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LR135308 (Enterococcus faecium isolate E7240 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

65. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP040237 (Enterococcus faecium strain VB3025 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

66. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP018066 (Enterococcus faecium strain E1 plasmid pE1_230, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

67. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP018129 (Enterococcus faecium strain A_020709_82 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

68. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_AP019409 (Enterococcus faecium strain SMVRE20 plasmid pSMVRE20L, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

69. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP016164 (Enterococcus faecium strain ISMMS_VRE_11 plasmid ISMMS_VRE11_p1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

70. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP018827 (Enterococcus faecium strain ISMMS_VRE_12 plasmid p1_ISMMS_VRE12, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

71. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_CP012461 (Enterococcus faecium strain ISMMS_VRE_7 plasmid ISMMS_VRE7_p1, complete sequence) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

72. spacer 2.2|2644405|26|CP025689|PILER-CR matches to NZ_LT598664 (Enterococcus faecium isolate Ef_aus00233 plasmid 2) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
tacgaattttttcattcattttcatt	Protospacer
 *  *******************

73. spacer 2.2|2644405|26|CP025689|PILER-CR matches to MT074468 (Salmonella phage rutana, complete genome) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcatttatttctgct	Protospacer
****************.****..

74. spacer 2.2|2644405|26|CP025689|PILER-CR matches to MN694486 (Marine virus AFVG_250M318, complete genome) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
ttttgattttttcattcattttcctt	Protospacer
   *.*******************

75. spacer 2.2|2644405|26|CP025689|PILER-CR matches to MT074459 (Salmonella phage bastian, complete genome) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcatttatttctgct	Protospacer
****************.****..

76. spacer 2.2|2644405|26|CP025689|PILER-CR matches to MK972709 (Salmonella phage SE20, complete genome) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcatttatttctgct	Protospacer
****************.****..

77. spacer 2.2|2644405|26|CP025689|PILER-CR matches to MT074463 (Salmonella phage gmork, complete genome) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcatttatttctgct	Protospacer
****************.****..

78. spacer 2.2|2644405|26|CP025689|PILER-CR matches to MT074467 (Salmonella phage falkor, complete genome) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcatttatttctgct	Protospacer
****************.****..

79. spacer 2.2|2644405|26|CP025689|PILER-CR matches to MK972707 (Salmonella phage SE24, complete genome) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcatttatttctgct	Protospacer
****************.****..

80. spacer 2.2|2644405|26|CP025689|PILER-CR matches to MH370386 (Salmonella phage S147, complete genome) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcatttatttctgct	Protospacer
****************.****..

81. spacer 2.2|2644405|26|CP025689|PILER-CR matches to MK972704 (Salmonella phage SE19, complete genome) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
aagtaattttttcatttatttctgct	Protospacer
****************.****..

82. spacer 2.2|2644405|26|CP025689|PILER-CR matches to MK288021 (Bacillus phage pW2, complete genome) position: , mismatch: 6, identity: 0.769

aagtaattttttcattcattttccaa	CRISPR spacer
ctgtaatttttttattcattttcttt	Protospacer
  **********.**********.

83. spacer 1.2|892756|36|CP025689|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039697 (Novosphingobium sp. ABRDHK2 plasmid pABRDHK22, complete sequence) position: , mismatch: 7, identity: 0.806

tccggggtaacgccaacggcacgttgcacgcgctgc	CRISPR spacer
actacgacaacgccaacggcacgttgcgcgcgctgc	Protospacer
 *.. *..*******************.********

84. spacer 1.3|892822|35|CP025689|PILER-CR,CRISPRCasFinder,CRT matches to MT764845 (Ruegeria phage Tedan, complete genome) position: , mismatch: 10, identity: 0.714

ttgctcatcatcgcactcaaccatgtccccttgtg	CRISPR spacer
agtttcatcatcccactcaaccgtgtcccaatcag	Protospacer
   .******** *********.******  *  *

85. spacer 1.32|894730|36|CP025689|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032313 (Pannonibacter phragmitetus BB plasmid p.BB_1, complete sequence) position: , mismatch: 11, identity: 0.694

attggcgacgtgccggacgacgaatggcggaactgg	CRISPR spacer
gagcgcgacgcgccggacgccgaatggcgggcggtg	Protospacer
.   ******.******** **********.    *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1431566 : 1500542

Bacillus_phage(15.38%)

transposase,coat,protease,tRNA,holin

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA25350.1\|1431566_1432829_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
QAA25351.1\|1432879_1434523_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
QAA25352.1\|1434914_1439225_+	PolC-type DNA polymerase III	A0A0A7RWA3	Clostridium_phage	2.4e-24	36.6
QAA25353.1\|1439343_1439814_+	ribosome maturation factor RimP	NA	NA	NA	NA
QAA25354.1\|1439973_1441128_+	transcription termination/antitermination protein NusA	NA	NA	NA	NA
QAA25355.1\|1441141_1441429_+	DUF448 domain-containing protein	NA	NA	NA	NA
QAA25356.1\|1441415_1441736_+	hypothetical protein	NA	NA	NA	NA
QAA25357.1\|1441740_1443990_+	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	6.6e-26	24.8
QAA25358.1\|1443986_1444268_+	DUF503 domain-containing protein	NA	NA	NA	NA
QAA25359.1\|1444284_1444632_+	30S ribosome-binding factor RbfA	NA	NA	NA	NA
QAA25360.1\|1444676_1445600_+\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
QAA25361.1\|1445641_1446592_+	bifunctional riboflavin kinase/FAD synthetase	NA	NA	NA	NA
QAA25362.1\|1446748_1447018_+	30S ribosomal protein S15	NA	NA	NA	NA
QAA25363.1\|1447246_1449367_+	polyribonucleotide nucleotidyltransferase	NA	NA	NA	NA
QAA25364.1\|1449616_1450852_+	insulinase family protein	G3MBJ8	Bacillus_virus	1.0e-52	32.3
QAA25365.1\|1451904_1452801_+	dipicolinic acid synthetase subunit A	NA	NA	NA	NA
QAA25366.1\|1452797_1453397_+	dipicolinate synthase subunit B	NA	NA	NA	NA
QAA25367.1\|1453541_1454600_+	aspartate-semialdehyde dehydrogenase	NA	NA	NA	NA
QAA25368.1\|1454657_1455905_+	aspartate kinase	NA	NA	NA	NA
QAA25369.1\|1455910_1456813_+	4-hydroxy-tetrahydrodipicolinate synthase	NA	NA	NA	NA
QAA25370.1\|1456886_1457528_+	pyroglutamyl-peptidase I	NA	NA	NA	NA
QAA25371.1\|1457660_1459331_+	ribonuclease J	NA	NA	NA	NA
QAA25372.1\|1459570_1461898_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.8e-87	50.3
QAA26980.1\|1461917_1462646_+	KR domain-containing protein	A0A0N9R355	Chrysochromulina_ericina_virus	6.1e-05	22.1
QAA25373.1\|1463385_1464270_+	DUF4115 domain-containing protein	NA	NA	NA	NA
QAA25374.1\|1464365_1464944_+	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	NA	NA	NA	NA
QAA25375.1\|1465023_1466271_+	competence/damage-inducible protein A	NA	NA	NA	NA
QAA25376.1\|1466366_1467413_+	recombinase RecA	A0A0S2MVG1	Bacillus_phage	7.9e-131	73.7
QAA25377.1\|1468057_1469629_+	ribonuclease Y	NA	NA	NA	NA
QAA26981.1\|1469935_1470733_+	TIGR00282 family metallophosphoesterase	NA	NA	NA	NA
QAA25378.1\|1470853_1471114_-	stage V sporulation protein S	J9PTX7	Bacillus_phage	5.5e-09	41.2
QAA25379.1\|1471404_1471866_+	CBS domain-containing protein	NA	NA	NA	NA
QAA25380.1\|1471923_1473186_-	MFS transporter	NA	NA	NA	NA
QAA25381.1\|1473391_1474636_-	MFS transporter	NA	NA	NA	NA
QAA25382.1\|1474860_1476345_+\|tRNA	tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB	NA	NA	NA	NA
QAA25383.1\|1476344_1476722_+	hypothetical protein	NA	NA	NA	NA
QAA25384.1\|1476862_1477414_+\|coat	outer spore coat protein CotE	NA	NA	NA	NA
QAA25385.1\|1477667_1478888_-	MFS transporter	NA	NA	NA	NA
QAA25386.1\|1479017_1480199_-	hypothetical protein	NA	NA	NA	NA
QAA25387.1\|1480185_1481388_-	DUF58 domain-containing protein	NA	NA	NA	NA
QAA25388.1\|1481384_1482329_-	MoxR family ATPase	NA	NA	NA	NA
QAA25389.1\|1482490_1485112_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	9.4e-32	21.7
QAA25390.1\|1485135_1486995_+	DNA mismatch repair endonuclease MutL	A0A1B2LRQ5	Wolbachia_phage	5.4e-66	32.6
QAA25391.1\|1488305_1488554_-	hypothetical protein	NA	NA	NA	NA
QAA25392.1\|1489272_1490568_+\|transposase	IS1380 family transposase	A0A1X9I6F6	Streptococcus_phage	9.2e-113	49.5
QAA25393.1\|1491067_1492483_+	hypothetical protein	NA	NA	NA	NA
QAA25394.1\|1492537_1493794_+	hypothetical protein	NA	NA	NA	NA
QAA25395.1\|1493985_1494555_+	resolvase	A0A219Y9V9	Aeromonas_phage	2.1e-37	48.1
QAA26982.1\|1494714_1495254_+	resolvase	NA	NA	NA	NA
QAA25396.1\|1495649_1497260_-\|transposase	transposase	NA	NA	NA	NA
QAA25397.1\|1497380_1497755_+\|holin	holin	A0A0N7GFE6	Paenibacillus_phage	2.4e-29	55.5
QAA25398.1\|1497732_1498152_+	hypothetical protein	NA	NA	NA	NA
QAA25399.1\|1498248_1498992_-	AAA family ATPase	NA	NA	NA	NA
QAA25400.1\|1498988_1500542_-\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	5.1e-09	28.6

DBSCAN-SWA_2

2331197 : 2397522

Streptococcus_phage(16.67%)

transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA26118.1\|2331197_2332508_-\|transposase	IS1380 family transposase	A0A1X9I6F6	Streptococcus_phage	3.4e-115	49.8
QAA26119.1\|2334812_2335250_+\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	4.2e-38	58.3
QAA26120.1\|2336270_2337374_+	ABC transporter ATP-binding protein	A0A1V0SE00	Indivirus	3.5e-12	26.8
QAA26121.1\|2337456_2338323_-	hypothetical protein	NA	NA	NA	NA
QAA26122.1\|2338643_2339306_-	beta-phosphoglucomutase	NA	NA	NA	NA
QAA26123.1\|2339283_2341602_-	family 65 glycosyl hydrolase	NA	NA	NA	NA
QAA26124.1\|2341598_2342477_-	tetrahydromethanopterin S-methyltransferase subunit C	NA	NA	NA	NA
QAA26125.1\|2342539_2343391_-	sugar ABC transporter permease	NA	NA	NA	NA
QAA26126.1\|2343392_2344700_-	sugar ABC transporter permease	NA	NA	NA	NA
QAA26127.1\|2344729_2345992_-	sugar ABC transporter substrate-binding protein	NA	NA	NA	NA
QAA26128.1\|2346085_2347879_-	alpha-glycosidase	NA	NA	NA	NA
QAA26129.1\|2347891_2349577_-	alpha-glucosidase	NA	NA	NA	NA
QAA26130.1\|2350032_2350986_-	LacI family transcriptional regulator	NA	NA	NA	NA
QAA26131.1\|2351205_2352573_+	MATE family efflux transporter	NA	NA	NA	NA
QAA26132.1\|2352544_2352931_+\|transposase	DDE transposase family protein	NA	NA	NA	NA
QAA26133.1\|2352861_2353221_+	hypothetical protein	NA	NA	NA	NA
QAA26134.1\|2355788_2356880_-	DUF4372 domain-containing protein	NA	NA	NA	NA
QAA26135.1\|2357072_2358383_-\|transposase	IS1380 family transposase	A0A1X9I6F6	Streptococcus_phage	3.4e-115	49.8
QAA27045.1\|2358612_2359500_+	hypothetical protein	NA	NA	NA	NA
QAA26136.1\|2359512_2360325_-	metal ABC transporter permease	NA	NA	NA	NA
QAA26137.1\|2360376_2361147_-	heme ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.0e-15	32.4
QAA27046.1\|2361401_2362301_-	metal ABC transporter substrate-binding protein	NA	NA	NA	NA
QAA27047.1\|2362428_2362698_-	30S ribosomal protein S14	NA	NA	NA	NA
QAA26138.1\|2363044_2363515_+	RpiB/LacA/LacB family sugar-phosphate isomerase	NA	NA	NA	NA
QAA26139.1\|2363558_2363741_-	hypothetical protein	NA	NA	NA	NA
QAA26140.1\|2363997_2365095_+	acyltransferase	NA	NA	NA	NA
QAA26141.1\|2365318_2365504_+	Na(+)-translocating NADH-quinone reductase subunit C	NA	NA	NA	NA
QAA26142.1\|2365663_2367592_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.7e-145	41.8
QAA26143.1\|2368111_2369296_+	hypothetical protein	NA	NA	NA	NA
QAA26144.1\|2369318_2370506_+	amidohydrolase family protein	NA	NA	NA	NA
QAA26145.1\|2370897_2371959_+	histidinol-phosphate transaminase	NA	NA	NA	NA
QAA26146.1\|2372305_2373385_+	iron ABC transporter permease	NA	NA	NA	NA
QAA26147.1\|2373388_2374150_+	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	4.7e-08	27.8
QAA26148.1\|2374164_2375175_+	ABC transporter	NA	NA	NA	NA
QAA26149.1\|2375349_2376264_+	PAS domain S-box protein	NA	NA	NA	NA
QAA26150.1\|2376417_2376786_-	MerR family transcriptional regulator	NA	NA	NA	NA
QAA26151.1\|2376865_2377171_+	hypothetical protein	NA	NA	NA	NA
QAA27048.1\|2377272_2377752_+	DUF2975 domain-containing protein	NA	NA	NA	NA
QAA26152.1\|2377762_2377993_+	transcriptional regulator	NA	NA	NA	NA
QAA26153.1\|2378115_2378442_-	hypothetical protein	NA	NA	NA	NA
QAA26154.1\|2378572_2379388_-	ABC transporter permease	NA	NA	NA	NA
QAA26155.1\|2379384_2380410_-	daunorubicin resistance protein DrrA family ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	6.1e-19	28.6
QAA26156.1\|2380729_2381488_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.8e-28	38.5
QAA26157.1\|2381489_2383514_+	ABC transporter permease	NA	NA	NA	NA
QAA26158.1\|2383677_2384328_+	DNA-binding response regulator	NA	NA	NA	NA
QAA26159.1\|2384314_2385253_+	sensor histidine kinase	A0A1V0SGX0	Hokovirus	7.1e-06	21.8
QAA26160.1\|2385412_2385721_-	hypothetical protein	NA	NA	NA	NA
QAA26161.1\|2385891_2386893_-	DhaKLM operon coactivator DhaQ	NA	NA	NA	NA
QAA26162.1\|2386999_2387578_+	dihydroxyacetone kinase transcriptional activator DhaS	NA	NA	NA	NA
QAA26163.1\|2387679_2388825_-	glycerol dehydrogenase	NA	NA	NA	NA
QAA26164.1\|2389042_2389414_-	dihydroxyacetone kinase	NA	NA	NA	NA
QAA26165.1\|2389406_2389982_-	dihydroxyacetone kinase subunit L	NA	NA	NA	NA
QAA26166.1\|2391062_2391806_-	AAA family ATPase	NA	NA	NA	NA
QAA26167.1\|2391802_2393356_-\|transposase	transposase	A0A2L1IVA1	Escherichia_phage	5.1e-09	28.6
QAA26168.1\|2394264_2395665_+	branched-chain amino acid transport system II carrier protein	NA	NA	NA	NA
QAA26169.1\|2396277_2397522_-\|transposase	transposase	A0A0H3UZC2	Geobacillus_virus	1.3e-44	30.3

DBSCAN-SWA_3

2691912 : 2705937

Prochlorococcus_phage(30.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA26413.1\|2691912_2693457_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	2.7e-71	49.2
QAA26414.1\|2693592_2694162_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	8.3e-26	37.8
QAA26415.1\|2694151_2695195_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	9.1e-63	44.7
QAA26416.1\|2695205_2696630_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	9.6e-55	34.2
QAA26417.1\|2696605_2698828_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.7e-157	41.6
QAA26418.1\|2698808_2699501_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
QAA26419.1\|2699497_2699749_-	phosphoribosylformylglycinamidine synthase subunit PurS	A0A1D7SNZ9	Cyanophage	3.5e-05	38.0
QAA26420.1\|2699745_2700456_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	6.3e-39	39.4
QAA26421.1\|2700499_2701798_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.2e-19	32.6
QAA26422.1\|2701794_2702946_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
QAA26423.1\|2702942_2703431_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	1.9e-23	48.3
QAA27071.1\|2703809_2704025_-	NETI motif-containing protein	NA	NA	NA	NA
QAA26424.1\|2704132_2704411_-	hypothetical protein	NA	NA	NA	NA
QAA26425.1\|2704629_2705937_-	NCS2 family permease	A0A0R6PHV4	Moraxella_phage	1.3e-42	30.8

DBSCAN-SWA_4

2762267 : 2768567

Staphylococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA26477.1\|2762267_2764139_-	copper-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	3.3e-103	36.1
QAA26478.1\|2764433_2765111_+	GMP synthase	H2EF20	Moumouvirus	6.7e-06	29.0
QAA26479.1\|2765219_2765687_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.6e-36	51.4
QAA26480.1\|2765683_2766889_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	3.8e-97	48.7
QAA26481.1\|2766881_2767508_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	4.0e-29	36.9
QAA26482.1\|2767508_2768567_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	8.7e-45	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025689

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection