CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025827	Akkermansia muciniphila strain AMDK-12 chromosome, complete genome	2 crisprs	cas7,cas8c,cas5,cas3,cas4,cas1,cas2,DinG,csa3	1	19	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025827_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025827_1

1418452-1422564

TypeI

Consensus_repeat	Method
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	PILER-CR
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CRT

61 spacers

cas2,cas1,cas4,cas3,cas5,cas8c,cas7

The CRISPR arrays of CP025827_1

>merge|CP025827|1|1418452-1422564|PILER-CR,CRISPRCasFinder,CRT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTTGCGATATGAGGCTACCCGGCCAGTTGCCTATGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTTGGCATGGTCGTCGTAAATGCTCATAATCTTATGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACAAGTAACGGAAATCACTTCCGAAGGCCGTTCCATGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCGCTGATACCATTTCCAATTCCCGGCCGGTTGCGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTGTTTCTACAAGTTAGATACATTTTAATTATATAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCTTTTTAGGGACTAGGTATAAAAAGTTTCCCCCTGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACACGGGCCTTGCTAACCACTTCCGGCAATTGCACGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACATAATAGTCCGGGGAATGTACGTCTACCGCACCCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACGGCAAACAGGACAAGGGACAGGACGCCGGAACCGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTGTCACCTACGGCGCAGGACTGCCCGCCGCACAAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACAATATAGGCATATCGGCCTGCCCCCTCATAATAGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCATGATTGTTTCTACCTCGCCGGACGGAAAAATGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCCCGTGCCTGAAATAAATGTCTTCCGACATCGGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTCCGGATGCTGGAAAGGCTGTTGGAGTTGGCCCCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCGGATGCCACCGGGTGCCGATGACGAACACCCGCCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCCTTGATTTTCTACTGGATTCTTTAAGCGATGACAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTCGCGGAGACCGTATCAGATTCCCGGCCGGTTGCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACAGGGGGGCAGGGGGTTATACCCGGCTTACCAGCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTGCGATACGAGGCTACCCGGCCAGTTGCCTATAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACACCGGTGGAAAGGATTGCCCACACCGCCGTTACAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACATTGTTTTGGTTCCTTTCTTTTAGTGTTTCTTTTGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTTTTAGTTTAGTTTAGTGTTTATTGTTTCGGGGGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCCACATGGACGACCTTGCCGCCGCCGTAGACGGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCCTTGATTTTTTATTGGATTCTTTAAGCGGTGACGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCCTTGATTTTTTATTGGATTCTTTAAGCGGTGACGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTTGTATAAAGTCCACCATCTTGACGGCACCTGCAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACACAGGAACGCCCCCCCCTCCGGGAAGAAACCGGCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCGCAAAAATGACGAGGGACAGAATGCCGGAGCCGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACGATTGTTCATGATTTAGTTTCCTTTCTTCTTTTGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCTTTCGGTTGTGTTCCCCGCCCCATAGTAGGGCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACAACCCCGTCTAAGTAGTCCACATCGCCTAAGCGGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTATTGTTTATTGTTCCGGGGGTTGCCCCCGTTGAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACATTTCCGCCGTCTACAGCGGTAGATAAATCCATCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACATCGTACTTGGGCAGTCCCATATCTTCACAAAAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACAAAACGATTGTAGTTGATCTGCTCGAAGACGTTTGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACAAGGCCAAAAGCCCATTTAGCGGTGTAGCCCATGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTGCCCTGGGACCTTAAGCCCGCCCTCGCAGACCTGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTTAAAATATAGTGTTAAATTACATTCATCAAAGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCACATGGAACATTTACAATTCCAAAAGAAGCCAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTCGCCGAAACTGTTTCCGATTCCCGCCCTGTTGCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCCGGTTCCCCGGACGATATTTTCCGGGGGAAAAGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCCTCAAAAACGTCTCCATGTCTAAGGGGCCATAGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTGTGGGGTCGGGGTCATCGGTGCCAAGGTCTCCAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCACGTGGAACATTTACAAGTTGAATCCAAAAGATGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCCCCGTATATTCATCATACATGGGCAATCCCATTGTCGCACTCCGCAAGGAGTACGTGGATTGAAACCTTGAGCGGGAAGCCACCCGGCCAGTTGCCTATTGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCGTCAAAAATGTGTCGATATCGGCGGGGTCATAGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTGGACCGCAAAGACGGTGCAATTAAGTACACCCCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTATCAAGCTCTTGCGAGCCACAAGACCCCTACCGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTGCGTACTCATGGCATGCGCCCGTGTACATGCTAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACATGAAGGAACGTTTCCATGTCCGCAAGGTCATAGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCGGGTGCAAGTACTTAAAGTGGTTGGCAAGGCCCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCGTCAAAAACGTGTTGATATCTGCGAGATCATAGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTGCGAACAGGACAAGGGATAAGATTCCGGAGCCGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTTAGATGATAAAGAGAGCGGTGTACTCTTTTGTGGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTATTGTATTGTTTAGTGTTCCGGGGGGGTCATCCGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTCCAGCCCCCTCCAATCTCAATCCCTATCGGAATAGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACTAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATTGTCGCACTCCGCAAGGAGTGCGTGGATTGAAACCCGGCGTAGGACAATCTCCCATGTGCTATGCGGCGTCGCACTCCGCAAGGAGTGCGCGTGGATTGAAACGGAAGCCTCAGCACATCACACATCGCCGCCTGTAGTCGCACTCTGCAAGGAGTGCGTGGATTGAAACCTGAATGGTGATTGTTATTTGCGGGTTTCCGCCCGTCGCACTCCTTGCAGAGTGCATGAAGAGGACG

>CP025827|1|1|1418452-1422295|PILER-CR
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTGCGATATGAGGCTACCCGGCCAGTTGCCTAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTGGCATGGTCGTCGTAAATGCTCATAATCTTAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AAGTAACGGAAATCACTTCCGAAGGCCGTTCCAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGCTGATACCATTTCCAATTCCCGGCCGGTTGCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGTTTCTACAAGTTAGATACATTTTAATTATATA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CTTTTTAGGGACTAGGTATAAAAAGTTTCCCCCT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ACGGGCCTTGCTAACCACTTCCGGCAATTGCAC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATAATAGTCCGGGGAATGTACGTCTACCGCACCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	GGCAAACAGGACAAGGGACAGGACGCCGGAACCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGTCACCTACGGCGCAGGACTGCCCGCCGCACAA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AATATAGGCATATCGGCCTGCCCCCTCATAATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CATGATTGTTTCTACCTCGCCGGACGGAAAAATG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCCGTGCCTGAAATAAATGTCTTCCGACATCGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCCGGATGCTGGAAAGGCTGTTGGAGTTGGCCCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGGATGCCACCGGGTGCCGATGACGAACACCCGCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTTGATTTTCTACTGGATTCTTTAAGCGATGACA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCGCGGAGACCGTATCAGATTCCCGGCCGGTTGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AGGGGGGCAGGGGGTTATACCCGGCTTACCAGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCGATACGAGGCTACCCGGCCAGTTGCCTATA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ACCGGTGGAAAGGATTGCCCACACCGCCGTTACA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATTGTTTTGGTTCCTTTCTTTTAGTGTTTCTTTT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTTTAGTTTAGTTTAGTGTTTATTGTTTCGGGGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCACATGGACGACCTTGCCGCCGCCGTAGACGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTGTATAAAGTCCACCATCTTGACGGCACCTGCA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ACAGGAACGCCCCCCCCTCCGGGAAGAAACCGGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGCAAAAATGACGAGGGACAGAATGCCGGAGCCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	GATTGTTCATGATTTAGTTTCCTTTCTTCTTTT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CTTTCGGTTGTGTTCCCCGCCCCATAGTAGGGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AACCCCGTCTAAGTAGTCCACATCGCCTAAGCGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TATTGTTTATTGTTCCGGGGGTTGCCCCCGTTGA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATTTCCGCCGTCTACAGCGGTAGATAAATCCATC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATCGTACTTGGGCAGTCCCATATCTTCACAAAA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AAAACGATTGTAGTTGATCTGCTCGAAGACGTTT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AAGGCCAAAAGCCCATTTAGCGGTGTAGCCCATG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCCCTGGGACCTTAAGCCCGCCCTCGCAGACCT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTAAAATATAGTGTTAAATTACATTCATCAAAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CACATGGAACATTTACAATTCCAAAAGAAGCCA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCGCCGAAACTGTTTCCGATTCCCGCCCTGTTGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCGGTTCCCCGGACGATATTTTCCGGGGGAAAAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTCAAAAACGTCTCCATGTCTAAGGGGCCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGTGGGGTCGGGGTCATCGGTGCCAAGGTCTCCA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CACGTGGAACATTTACAAGTTGAATCCAAAAGAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCCCGTATATTCATCATACATGGGCAATCCCATT
GTCGCACTCCGCAAGGAGTACGTGGATTGAAAC	CTTGAGCGGGAAGCCACCCGGCCAGTTGCCTATT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGTCAAAAATGTGTCGATATCGGCGGGGTCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGGACCGCAAAGACGGTGCAATTAAGTACACCCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TATCAAGCTCTTGCGAGCCACAAGACCCCTACCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCGTACTCATGGCATGCGCCCGTGTACATGCTA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATGAAGGAACGTTTCCATGTCCGCAAGGTCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGGGTGCAAGTACTTAAAGTGGTTGGCAAGGCCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGTCAAAAACGTGTTGATATCTGCGAGATCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCGAACAGGACAAGGGATAAGATTCCGGAGCCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TATTGTATTGTTTAGTGTTCCGGGGGGGTCATCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC

>CP025827|1|1|1418452-1422497|CRISPRCasFinder
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTGCGATATGAGGCTACCCGGCCAGTTGCCTAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTGGCATGGTCGTCGTAAATGCTCATAATCTTAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AAGTAACGGAAATCACTTCCGAAGGCCGTTCCAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGCTGATACCATTTCCAATTCCCGGCCGGTTGCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGTTTCTACAAGTTAGATACATTTTAATTATATA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CTTTTTAGGGACTAGGTATAAAAAGTTTCCCCCT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ACGGGCCTTGCTAACCACTTCCGGCAATTGCAC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATAATAGTCCGGGGAATGTACGTCTACCGCACCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	GGCAAACAGGACAAGGGACAGGACGCCGGAACCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGTCACCTACGGCGCAGGACTGCCCGCCGCACAA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AATATAGGCATATCGGCCTGCCCCCTCATAATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CATGATTGTTTCTACCTCGCCGGACGGAAAAATG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCCGTGCCTGAAATAAATGTCTTCCGACATCGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCCGGATGCTGGAAAGGCTGTTGGAGTTGGCCCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGGATGCCACCGGGTGCCGATGACGAACACCCGCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTTGATTTTCTACTGGATTCTTTAAGCGATGACA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCGCGGAGACCGTATCAGATTCCCGGCCGGTTGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AGGGGGGCAGGGGGTTATACCCGGCTTACCAGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCGATACGAGGCTACCCGGCCAGTTGCCTATA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ACCGGTGGAAAGGATTGCCCACACCGCCGTTACA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATTGTTTTGGTTCCTTTCTTTTAGTGTTTCTTTT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTTTAGTTTAGTTTAGTGTTTATTGTTTCGGGGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCACATGGACGACCTTGCCGCCGCCGTAGACGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTGTATAAAGTCCACCATCTTGACGGCACCTGCA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ACAGGAACGCCCCCCCCTCCGGGAAGAAACCGGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGCAAAAATGACGAGGGACAGAATGCCGGAGCCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	GATTGTTCATGATTTAGTTTCCTTTCTTCTTTT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CTTTCGGTTGTGTTCCCCGCCCCATAGTAGGGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AACCCCGTCTAAGTAGTCCACATCGCCTAAGCGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TATTGTTTATTGTTCCGGGGGTTGCCCCCGTTGA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATTTCCGCCGTCTACAGCGGTAGATAAATCCATC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATCGTACTTGGGCAGTCCCATATCTTCACAAAA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AAAACGATTGTAGTTGATCTGCTCGAAGACGTTT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AAGGCCAAAAGCCCATTTAGCGGTGTAGCCCATG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCCCTGGGACCTTAAGCCCGCCCTCGCAGACCT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTAAAATATAGTGTTAAATTACATTCATCAAAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CACATGGAACATTTACAATTCCAAAAGAAGCCA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCGCCGAAACTGTTTCCGATTCCCGCCCTGTTGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCGGTTCCCCGGACGATATTTTCCGGGGGAAAAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTCAAAAACGTCTCCATGTCTAAGGGGCCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGTGGGGTCGGGGTCATCGGTGCCAAGGTCTCCA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CACGTGGAACATTTACAAGTTGAATCCAAAAGAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCCCGTATATTCATCATACATGGGCAATCCCATT
GTCGCACTCCGCAAGGAGTACGTGGATTGAAAC	CTTGAGCGGGAAGCCACCCGGCCAGTTGCCTATT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGTCAAAAATGTGTCGATATCGGCGGGGTCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGGACCGCAAAGACGGTGCAATTAAGTACACCCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TATCAAGCTCTTGCGAGCCACAAGACCCCTACCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCGTACTCATGGCATGCGCCCGTGTACATGCTA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATGAAGGAACGTTTCCATGTCCGCAAGGTCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGGGTGCAAGTACTTAAAGTGGTTGGCAAGGCCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGTCAAAAACGTGTTGATATCTGCGAGATCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCGAACAGGACAAGGGATAAGATTCCGGAGCCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TATTGTATTGTTTAGTGTTCCGGGGGGGTCATCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC
GTCGCACTCCGCAAGGAGTGCGCGTGGATTGAA	ACGGAAGCCTCAGCACATCACACATCGCCGCCTGTA
GTCGCACTCTGCAAGGAGTGCGTGGATTGAAAC

>CP025827|1|1|1418452-1422564|CRT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTGCGATATGAGGCTACCCGGCCAGTTGCCTAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTGGCATGGTCGTCGTAAATGCTCATAATCTTAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AAGTAACGGAAATCACTTCCGAAGGCCGTTCCAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGCTGATACCATTTCCAATTCCCGGCCGGTTGCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGTTTCTACAAGTTAGATACATTTTAATTATATA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CTTTTTAGGGACTAGGTATAAAAAGTTTCCCCCT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ACGGGCCTTGCTAACCACTTCCGGCAATTGCAC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATAATAGTCCGGGGAATGTACGTCTACCGCACCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	GGCAAACAGGACAAGGGACAGGACGCCGGAACCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGTCACCTACGGCGCAGGACTGCCCGCCGCACAA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AATATAGGCATATCGGCCTGCCCCCTCATAATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CATGATTGTTTCTACCTCGCCGGACGGAAAAATG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCCGTGCCTGAAATAAATGTCTTCCGACATCGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCCGGATGCTGGAAAGGCTGTTGGAGTTGGCCCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGGATGCCACCGGGTGCCGATGACGAACACCCGCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTTGATTTTCTACTGGATTCTTTAAGCGATGACA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCGCGGAGACCGTATCAGATTCCCGGCCGGTTGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AGGGGGGCAGGGGGTTATACCCGGCTTACCAGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCGATACGAGGCTACCCGGCCAGTTGCCTATA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ACCGGTGGAAAGGATTGCCCACACCGCCGTTACA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATTGTTTTGGTTCCTTTCTTTTAGTGTTTCTTTT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTTTAGTTTAGTTTAGTGTTTATTGTTTCGGGGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCACATGGACGACCTTGCCGCCGCCGTAGACGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTTGATTTTTTATTGGATTCTTTAAGCGGTGAC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTGTATAAAGTCCACCATCTTGACGGCACCTGCA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ACAGGAACGCCCCCCCCTCCGGGAAGAAACCGGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGCAAAAATGACGAGGGACAGAATGCCGGAGCCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	GATTGTTCATGATTTAGTTTCCTTTCTTCTTTT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CTTTCGGTTGTGTTCCCCGCCCCATAGTAGGGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AACCCCGTCTAAGTAGTCCACATCGCCTAAGCGG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TATTGTTTATTGTTCCGGGGGTTGCCCCCGTTGA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATTTCCGCCGTCTACAGCGGTAGATAAATCCATC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATCGTACTTGGGCAGTCCCATATCTTCACAAAA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AAAACGATTGTAGTTGATCTGCTCGAAGACGTTT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	AAGGCCAAAAGCCCATTTAGCGGTGTAGCCCATG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCCCTGGGACCTTAAGCCCGCCCTCGCAGACCT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTAAAATATAGTGTTAAATTACATTCATCAAAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CACATGGAACATTTACAATTCCAAAAGAAGCCA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCGCCGAAACTGTTTCCGATTCCCGCCCTGTTGC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCGGTTCCCCGGACGATATTTTCCGGGGGAAAAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCTCAAAAACGTCTCCATGTCTAAGGGGCCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGTGGGGTCGGGGTCATCGGTGCCAAGGTCTCCA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CACGTGGAACATTTACAAGTTGAATCCAAAAGAT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCCCGTATATTCATCATACATGGGCAATCCCATT
GTCGCACTCCGCAAGGAGTACGTGGATTGAAAC	CTTGAGCGGGAAGCCACCCGGCCAGTTGCCTATT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGTCAAAAATGTGTCGATATCGGCGGGGTCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGGACCGCAAAGACGGTGCAATTAAGTACACCCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TATCAAGCTCTTGCGAGCCACAAGACCCCTACCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCGTACTCATGGCATGCGCCCGTGTACATGCTA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	ATGAAGGAACGTTTCCATGTCCGCAAGGTCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGGGTGCAAGTACTTAAAGTGGTTGGCAAGGCCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CGTCAAAAACGTGTTGATATCTGCGAGATCATAG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TGCGAACAGGACAAGGGATAAGATTCCGGAGCCG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TTAGATGATAAAGAGAGCGGTGTACTCTTTTGTG
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TATTGTATTGTTTAGTGTTCCGGGGGGGTCATCC
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TCCAGCCCCCTCCAATCTCAATCCCTATCGGAATA
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	TAGAGAGCGAGGCAGGCCGCCCGGTTGCCTATT
GTCGCACTCCGCAAGGAGTGCGTGGATTGAAAC	CCGGCGTAGGACAATCTCCCATGTGCTATGCGGC
GTCGCACTCCGCAAGGAGTGCGCGTGGATTGAA	ACGGAAGCCTCAGCACATCACACATCGCCGCCTGTA
GTCGCACTCTGCAAGGAGTGCGTGGATTGAAAC	CTGAATGGTGATTGTTATTTGCGGGTTTCCGCCC
GTCGCACTCCTTGCAGAGTGCATGAAGAGGACG

Protein	Signature genes	Signature genes Name	Protein_function
CP025827.1\|QAA45899.1\|1428682_1429027_+\|rubrerythrin	unknown	unknown	gnl\|CDD\|275328
CP025827.1\|QAA45892.1\|1423039_1423339_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367747
CP025827.1\|QAA45896.1\|1426174_1426456_+\|hypothetical-protein	unknown	unknown	unknown
CP025827.1\|QAA45889.1\|1416926_1417946_+\|subtype-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
CP025827.1\|QAA45891.1\|1422779_1423043_-\|hypothetical-protein	unknown	unknown	unknown
CP025827.1\|QAA45886.1\|1411215_1413036_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245
CP025827.1\|QAA45900.1\|1429044_1429560_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378246
CP025827.1\|QAA45887.1\|1413037_1413751_-\|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
CP025827.1\|QAA45885.1\|1410327_1411197_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
CP025827.1\|QAA45894.1\|1424319_1424535_+\|hypothetical-protein	unknown	unknown	unknown
CP025827.1\|QAA45897.1\|1426448_1427330_+\|hypothetical-protein	unknown	unknown	unknown
CP025827.1\|QAA45898.1\|1427998_1428502_+\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379034
CP025827.1\|QAA45888.1\|1413753_1416159_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
CP025827.1\|QAA45893.1\|1423383_1424004_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222807
CP025827.1\|QAA46991.1\|1408338_1409493_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376607
CP025827.1\|QAA45895.1\|1424543_1426178_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378829
CP025827.1\|QAA45884.1\|1404293_1407875_+\|proline-dehydrogenase	unknown	unknown	gnl\|CDD\|143443
CP025827.1\|QAA46992.1\|1416258_1416930_+\|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
CP025827.1\|QAA45883.1\|1403139_1404135_+\|hypothetical-protein	unknown	unknown	unknown
CP025827.1\|QAA45890.1\|1417960_1418251_+\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856

Protein	Function_ID	Function_description	E-value
CP025827.1\|QAA45899.1\|1428682_1429027_+\|rubrerythrin	gnl\|CDD\|275328	TIGR04535, conserved_hypothetical_protein, ferritin-like protein. Two families of proteins are known to be encoded, with some regularity, next to the gene for encapsulin (pfam04454), with surrounds the target protein to form a prokaryotic proteinaceous organelle. One is the family of enzymes that includes Dyp-type peroxidases. The other is this family, with a resemblance to bacterioferritins. Encapsulin-associated forms of the proteins in these two families have a necessary C-terminal motif that resembles DGSL[SGN]IGSL[KR]. Members of this family that include the last columns of the model in the hit region (and are encoded next to the encapsulin gene) should be designated encapsulin-associated ferritin-like protein.	1.15018e-18
CP025827.1\|QAA45892.1\|1423039_1423339_-\|hypothetical-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	3.60688e-05
CP025827.1\|QAA45889.1\|1416926_1417946_+\|subtype-I-C-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	4.07273e-173
CP025827.1\|QAA45886.1\|1411215_1413036_-\|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
CP025827.1\|QAA45900.1\|1429044_1429560_-\|hypothetical-protein	gnl\|CDD\|378246	pfam09719, C_GCAxxG_C_C, Putative redox-active protein (C_GCAxxG_C_C). This entry represents a putative redox-active protein of about 140 residues, with four perfectly conserved Cys residues. It includes a CGAXXG motif. Most members are found within one or two loci of transporter or oxidoreductase genes. A member from Geobacter sulfurreducens, located in a molybdenum transporter operon, has a TAT (twin-arginine translocation) signal sequence for Sec-independent transport across the plasma membrane, a hallmark of bound prosthetic groups such as FeS clusters.	2.03665e-33
CP025827.1\|QAA45887.1\|1413037_1413751_-\|type-I-C-CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	1.91961e-89
CP025827.1\|QAA45885.1\|1410327_1411197_-\|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.57263e-135
CP025827.1\|QAA45898.1\|1427998_1428502_+\|thioredoxin-family-protein	gnl\|CDD\|379034	pfam13098, Thioredoxin_2, Thioredoxin-like domain.	1.707e-13
CP025827.1\|QAA45888.1\|1413753_1416159_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	9.10941e-51
CP025827.1\|QAA45893.1\|1423383_1424004_-\|hypothetical-protein	gnl\|CDD\|222807	PHA00662, PHA00662, hypothetical protein.	9.5243e-22
CP025827.1\|QAA46991.1\|1408338_1409493_+\|hypothetical-protein	gnl\|CDD\|376607	pfam01757, Acyl_transf_3, Acyltransferase family. This family includes a range of acyltransferase enzymes. This domain is found in many as yet uncharacterized C. elegans proteins and it is approximately 300 amino acids long.	4.0966e-18
CP025827.1\|QAA45895.1\|1424543_1426178_+\|hypothetical-protein	gnl\|CDD\|378829	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein. This family of head-tail connector proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. This protein is found in Phage T7 and T3 among others.	7.23893e-156
CP025827.1\|QAA45884.1\|1404293_1407875_+\|proline-dehydrogenase	gnl\|CDD\|143443	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.	0
CP025827.1\|QAA46992.1\|1416258_1416930_+\|CRISPR-associated-protein-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.25839e-40
CP025827.1\|QAA45890.1\|1417960_1418251_+\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.01496e-32

>CP025827.1|QAA45890.1|1417960_1418251_+|CRISPR-associated-endonuclease-Cas2
MYILITYDVATDDKAGQRRLRQVARACENVGQRVQNSVFECELTPAQLVDIRNKLLKIIDNESDSLRIYHMGSNWHHKIEQLGKEKSYDISGPLII
>CP025827.1|QAA45889.1|1416926_1417946_+|subtype-I-C-CRISPR-associated-endonuclease-Cas1
MKKHLNTLFVTLEGCWLSKDGDTVKVNAEGTCLLRVPLHNLEGIVTLGWDIGVSPYLMGACAERGITLSFCNPYGKFLAGVQGFMKGNILLRRDQYRWADDEARWVGVAREMIGAKIANCRSLLLRAQRTYGKDLSEEVDRLAAFCRMARGCNSGDMLRGIEGSAAETYFSCLSHCQRTEDPELVFESRNRRPPKDCFNALLSFLYSLLCHDARSALESSGIDAAAGFLHRDRPGRPGMALDLMEEFRAPLADRLALTLINRKQISSDDFDKEESGAVFLKEDSRKKVLNAWQERKKTVLVHPFLQEKTTLGLLIHIQALLLARHLRGDLDCYPPFIGK
>CP025827.1|QAA46992.1|1416258_1416930_+|CRISPR-associated-protein-Cas4
MSVSCPYSVPLAALQHYLYCPRQCALIHLECCWEENQFTAEGKVFHERVDSGMTENRGRKRVLRSLHISSVQWGIHGIADVVEAVYVQKGSGVVSMTPVEYKVGKPKPHRADEVQVCAQALCLEEMFEIKVPFGFLFYGKNQRRLKVSFDEELRFLTARVIRDAREVLTGMVTPLPFYSKNCKSCSLVNDCLPDVCREHRQTMKARVDSVFEDSLETSEADDL
>CP025827.1|QAA45888.1|1413753_1416159_-|CRISPR-associated-helicase/endonuclease-Cas3
MCNIMRPMNDENPPIAHRKWLDNGICVDEPLYTCPNDKGKIPGHLNMVRYYAGQLIKELPASLRGAWLYWVEAAALWHDLGKFSLEFQKYIKDKQISPHSTETVELNGGKKVDHSTAGAKHASTYWGTSKASYGDMLAYIIAGHHAGLPNGPDLFFERFHKKIPDWESYAPADLYSFTEPSPPRLWHEKSHTPDRNLGFAVAMQIRMLFSFLTDSDFLGTEHFMCQEKRDMRPSWPQNILAQMSLRLEAHLGNMESARNLTPIQRLRREIHHQCLSRAQVPQGIYQLNVPTGGGKTLSSLSFALAHAQHCHMSRVIYVIPFTSIIDQTAKTFREIMAPLDEKFGMECVLEHHSNLAADKDTERVRLMSENWDAPLIVTTSVQFFESLFSNKPSVCRKLHNITNSVIIFDEAQNLPSHLLAPCLEAMKTLEKDYGCTLVLCTATQPTLEHKKEFPIGWPAGELTSLLGNDFERRLENAMQRVTIQHLGRMDQNALIRHWNTLPDQSALFIVNTTREAQFLFDAFSSQSASHILHLSARLCPIHREKVIQTAKQKLEQGKNIILIATRVIEAGIDISFPTVYRACAGIDSIAQAAGRCNRHGEREGKGLVFVYESTDFPLPDILDDLRASASATREILAQEPEAALLSPEISNRFFRIYYNNRKNQTNLWDSKNIREMALLNPVSEKVFKSLRFKDINKSFKMIPDASHSVMITIDPEACHIRERLKILDSQGLYPNKSLRREIQRYSVQIYDREWVALQKHGMESYIDGTINILHPSPSVYDEHKGILSLQQSDPAYIGFIC
>CP025827.1|QAA45887.1|1413037_1413751_-|type-I-C-CRISPR-associated-protein-Cas5
MTETGILLHVWGEWACFTRPELKAERYSYEVMTPSAAIGILSAIYWKPEIRWHIDKIHVLKPIKLVSIRRNEVSAKATPPKSDVIKNGGEARLGLLVEETRQQRSSTILQDVDYLIEAHFSVLKEQENINTQAKHYEMFKRRAMKGQSFHQPYFGTREFPVSFEWWDQSTPPPSSLPPDQQNRNLGMMLHEVEFVPDKKGKIISSLDGKKLSAVPHFFPAELKSGILHVPSLNRTNS
>CP025827.1|QAA45886.1|1411215_1413036_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MIIPALTQLYDRLSQDPEVMEKGDLPTMGKSRQKISFRIILKPDGTLVSMDDIRAIDKPLGKKVAKPHSIPILVLGANKSSGSGLNPCFLWDNCGYLLGYKGVTEEKEKKRIREAFSSFRDKHLAVESSVNHPHFSAVCRFLEQWDPDLTPSLLPSPDLWISNGIFRITGEMHDVHEIPEIQKWWFHRGAEEWQGSKKEKAQGICLVSGKEEPLALLHEPAIKGIPGAQVSGAKIVSFNCASFTSYGKEQSLNAPVGENTAFSYCNALNYLLSHSQYNTRLGDTTVVFWADAPRETMDMEAFLFGSVTADKPLPPAVDRTTLDKISKITNLLRKGELSKSKLDDADVPFFILGISPNASRLFIRFWNQSTFGKLMENIQAHYRDISLARQWTEENSKHPDPELPKPYDILKETVRDAKEIPSLYSGVLMKSILFRLPYPDIIAQAIIRRCRIDKKINYIRCSFLKGWLYRKTNNHDLTTMQTINPDNHNIGYLLGRLFAIYVKTQEDALGHNLNRTIRDSYFSSMSAHPRSVLPTINKLYQHHLRLIKQNHGEGAKINREKLVQEIKSHMPDIPPAHLGLEQQAYFDLGFYHQMNDFFTSKDKEAS
>CP025827.1|QAA45885.1|1410327_1411197_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MTTMNKIDFLILFDVTDANPNGDPDAGNLPRMDAESGHGLITDVCLKRKVRNFIQLTRDGEPSYEIYVKEKAILNNQQSRAYQALDINQKDAKQADYDKAKSWMCQTFFDIRTFGAVMTTGVNCGQVRGPIQISFARSIDPVSTSEFAVTRCAVTTEAEAIKQKGDNRTMGRKFTLPYALYKTQGCLNPFLAKQTGFSEKDWNIFQDALVHLFDFDASAARPSGSMAIRKIVLFKHDSELGNAPAHKLFDAVSVIKHENVEFPRSIKDYDIIVNRALIPSGITIEEIDC
>CP025827.1|QAA46991.1|1408338_1409493_+|hypothetical-protein
MNTNQSLNSRGSHIAWVDFLRILACFLVVLAHCCDPFVGSFDGSFNFKSAVFWGSLVRPCVPLFAMISGVLLFPVTLEMGAFYSRRLKRVLVPLIVWSLALPLLYFGYFDAGVQTSSPNIVMDTYTWSATVGKLYTFFFNFNYDTTPLWYVYMLVGLYLFMPIMSAWLTQARRKDVKIFLGIWIFSMTLPYIQMLAPALGYEGNYGNMGILGVCDWNPYGMFYNFSGFLGYMVLAHYLTKYPLAWSWKKTLSITIPFFLIGFAVTFFGFLETQKHFPGQYSKLEVLWYFSGINVFLMTFAIFTIVSRLRIKAGPVLSKVAALTFGVYLCHFFFVQCSYDFVNFIGLGGLPSAVKIPLMACLASAVSAALVWLLSLNRWTRKSIM
>CP025827.1|QAA45884.1|1404293_1407875_+|proline-dehydrogenase
MTDSSIPDMMAEARRGQWTDQQLAAKAVELAESILKQSNAGMRGKEKRQAQQMERMMNDPAGKAFTLALADRVFRPSSPARGAELFRYLLDGYGVPRYLSAADRFAMKMGGRFSAQFPGVVMPMITSQLRKESSNVILPAEDGKLRPHLRRRRKGGIRMNINQLGEAILGESEAHHRLQQVVDRLTDKDCDYISVKISAIFSQIHLVAFEETVKLIQERLRILYRAAITNAVTLPDGSRKPKFVNLDMEEYRDLHMTAEAFKRTLMEDEFMQLEAGIVLQAYLPDSWEEQMKLCAWAKERVEQGGARIKIRLVKGANLAMEKVEASMHGWAQAPYGTKAQVDANYKRMLHYGCMPDNARYVQFGVASHNLFDLCYAMLLREREGVRDQVEFEMLEGMANHQARVIRQAADGLLLYAPVVLKEDFHSAIAYLVRRLDENTSEENFLHDLFGMTPGSRSWEVQKKRFLKACQEKDEVKYGPNRTQNRAADPIQPSHYRDAFANERDTDWSLRQNAEWINGLIAAEKEKSGEEIPLVIDGEEITTNLWGVGRDPSRHNEVSYKFAYADFDQVEHALVTADRVRSSWASKSIGERAEILHRAAQELSRIRGEAIAAMVRDAGKAPTEADVEVSEAIDFCRYYAEGLDRDGMNDGVEMSPLGTICVMSPWNFPFAIPTGGVAAALMAGNAVVFKPSELAVYTAWQIVQAFWRAGVPKNVLQFVPMPRNEISRKFLMDPRLNGVIMTGSYRTGKMLRELRPDLHVLAETSGKDAMIITATADPDQAVKDLVKSAFGHSGQKCSAASVAIVEASVYDNPAFLRQLKDAAASLKVGGSWEVNSVVTPLIREPEGNLLRALTQLEPGEEWLLKPEPSEDNPCLWSPGIRLGVKPGSWFHQTECFGPVLGIIRAENLEEAIDIQNDSEFGLTGGLQSLDEREIALWKTKVQVGNAYINRVITGAIVRRQPFGGWNHSSMGPGAKAGGPNYLTMLGSWEEKALPQKLRTPGERISGLVEKLCSELPDCAKRIRSAAGSQAKWWMEEFGVDHDPSRVYGENNIFRYTPVKGILARVENMSDDDVAILLLGAKLCGVLLHLSIGASRPWIQKMHGYYASLSVETEAELIGRMPEALQGVRFLRGTDISEALVNAAHARDVEVLDRPVLANGRVELLGYFREQAVSETVHRYGNLIPPPGSFKTDSV
>CP025827.1|QAA45883.1|1403139_1404135_+|hypothetical-protein
MDGSLFMRTLAVIAFLALAFPGRAEMDALSVSCSAAPSLPSPVLVVYGSEEPGSAEARWLKALQPGTEERRALDEYVRDVQFVTVPRHPSVKDWEENGSLSRAAMHGVRMLPSVVFLDSKGRVFDLVEGGASAASLREKVSLLAEKAQRVRPVTRVNDIPKGGDPAAEASAICRELEQVPPEAWFRDYPGTMKRLEKLNCTVPAFLNAREAAFRLEKNRKTAELLGESFRACKASSIRTCLEAWRACADDPSLSVEERQLILLSMVHPLWVRLEEVLYREAHTPESEDAFNQAVAVLEEVRDMNRSSVCGRRAHQLREELRRARLAAARYD
>CP025827.1|QAA45891.1|1422779_1423043_-|hypothetical-protein
MNNPLLSTEEKRRWLARVFRDEDGEYSQADKFKALVEDTKLAALQQEEEEFKRQREIGAAPQDPILALLQAIPPAELNLHQHPLSEK
>CP025827.1|QAA45892.1|1423039_1423339_-|hypothetical-protein
MLMKALDFIQIFASNVRRLDFRLSSAQVILAVIAGYRRHSTITEATRLHPNTVTNILQDLIAQGYVNRIGDSRPYVYRPTADGEQLAGNLLDKNTFPGT
>CP025827.1|QAA45893.1|1423383_1424004_-|hypothetical-protein
MINESLLQPDTPSALDICNAALSKIGEAPLDALIANESTASRLCVLHYHPARRETLCMARWTFAATQTTLDSVSAQAPNSLTPYQFTLPADCLRVLDVECSEWKMQGRRIHASCAPLPLSYIADIENADQFDPLFMDALATRLAEKLAMPLTGNQSLRQNLNQEFHKIILPQAATVNAVQCFSNDSHPLLDLLRKIKSPSCPEECE
>CP025827.1|QAA45894.1|1424319_1424535_+|hypothetical-protein
MGFMKPSTPSASAPEQTIPVKAESVEQEVGEDYQARERQRQGMISTILARRHSSAGQGEVNPRTLLRKTLG
>CP025827.1|QAA45895.1|1424543_1426178_+|hypothetical-protein
MEERTAELNSVYKSLAAQRAPWETWWDRLRDYVLPRRLNREGDVSLPNRDAMDRMTDTTAVEACQKLASGHMSYITPSHDVWFKWSAPDDRGGDEAEAWYNQCSEIALKELSVSNFYTEIHECFLDRVALGTGSLFTGISSDGRLLFTNIPCGQFACAENAEGRVDTYVREFTYTAHQARSMFGVKALGPKAREVLERGGNPYATTLRFLHVVRPRTRRSRRREQASHMPFESVYLSLDDQVIVEEGGYMEFPYLVTRFLKWGSGPYGLAPGRLVFPAIQQVQFLNRILDTLGEVAAFPRILELANQIGEVDLRAGGRTVITPEAASLHLPREWATQGRYDVGMDRLTQKQDAIRRAYYLPMLELWSGHRGNMTATEVMARENERVLMFSPSFTLFVSDLYSTMTRIFSLLFRMGKFPRPPRAVLRVGRDGSVAVGEPRVVYQSKIALVLRRLQSEGMDRSLQRLNMMMQAAPDLADHVDWDHCFRLSARVDGAPESMLRPWADVRAMRKERADLQQGASLAPAEEDPYASLNPLLDQLTAIQK
>CP025827.1|QAA45896.1|1426174_1426456_+|hypothetical-protein
MNQDTTLQQEASVREARLKRRQLLRVFDTPDGREALTFLETRFQTDLPVFQGSPGNYDPLDAMRRDAYREIFLYIRRQLQLAIKETTEEEKND
>CP025827.1|QAA45897.1|1426448_1427330_+|hypothetical-protein
MIDSIDNSMAAPFRDAEGSGFVSPETDALSETEVQTEPFPPLLGEDGGFAPDWYARFDELKGMEKSLSKFKTPEALAKSYAELERLRRYPGVENEEQMARFRRLAGLPESEEEYRLERPESTPESEWNADLAERMARTAYRYGVPPEAMNALQETMAQAYDEAREHMEDARMEMEMQAEQSLQQEWGSNYERNMGRAAAVLRRLASETGVDADALLDNPGLGSNPDAIRLLYQASRLLDEAPLHHTGNAVPSPAEEAMRMESDPSHPLYEAYMNVNHPNHKYANELYDRLTTR
>CP025827.1|QAA45898.1|1427998_1428502_+|thioredoxin-family-protein
MMNRHFIFALCTVLGFSVSGISMAQSVPTDKEAAAKAAKAAKVKFRWGKSLKSAQKQAEETGLPIVLLFTGTSWCGFCVKLEKEILSKKDFKQGMDGVAIGVKFEFGSSDFSKSKEAKTYNITGVPAMVVVDADGKELGRTGYVPGRTPAQYVEFFKKYAPKTAEGK
>CP025827.1|QAA45899.1|1428682_1429027_+|rubrerythrin
MPEFTNAFSGLKENRKLTHGELVRAIRFMIAAEYEAIQLYTQLAESIDHKLAQEVLLDISNEEKEHAGEFLRLLQVLAPDEQGFYDEGMGETNEKIDKLKASCPDGACSSSASH
>CP025827.1|QAA45900.1|1429044_1429560_-|hypothetical-protein
MIPSKEDRAARALDYFHQGYNCSQSVFAAFADVCGLTEETALKLSSPLGAGIGRMREVCGAFCGMSMLAGSLYGNSSPETGEKEKIFSLVQSLAASFKQEFGTLYCRELLGLSPESLAAETARPGERTAAYYASRPCERCIAFCARCAAELEAKARHHENTRPPLQGNRAL

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Crispr_ID: CP025827_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025827_2

1910443-1912166

Orphan

Consensus_repeat	Method
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	PILER-CR
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CRISPRCasFinder
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CRT

26 spacers

The CRISPR arrays of CP025827_2

>merge|CP025827|2|1910443-1912166|PILER-CR,CRISPRCasFinder,CRT
GTTTCAATTCACGCACCCGTGTGGGTGCGACTTTAGGGCCTTAGTATATTTTTTATATCATTTTTGTTTCAATTCACGCACCCGTGTGGGTGCGACCCGTCAACATGGGTGCGCATTGGCTTTTCTGCCTCGTTTCAATTCACGCACCCGTGTGGGTGCGACGAAAAAGCAGGGGAACCGCATTAAAAGCGAGCTTGTTTCAATTCACGCACCCGTGTGGGTGCGACCCATACCGCCGTCATGGACTTGCACAAGACGGTGTGTTTCAATTCACGCACCCGTGTGGGTGCGACTTGTTGCTAGCCTTGAGAGAACCATCACCGTTTGTTTCAATTCACGCACCCGTGTGGGTGCGACCAACACGATACGGTTATAAGTGTTTTTATCTATTGTTTCAATTCACGCACCCGTGTGGGTGCGACCGCAGGATTCAAATCGTGGAAAGGAGGGGGGCATGTTTCAATTCACGCACCCGTGTGGGTGCGACGTCATCTCCCAGAATTGGCAGGACGTAGCATTCAGTTTCAATTCACGCACCCGTGTGGGTGCGACTTTGCCACCCCTGCCCGACCGGACCCGGGGTAAACGTTTCAATTCACGCACCCGTGTGGGTGCGACTAGAAAGACAATAGACTATGAATAAAGACAAACTGTTTCAATTCACGCACCCGTGTGGGTGCGACCCCCATGTAGTCGCAACCATTAACCTTATCGCCGGTTTCAATTCACGCACCCGTGTGGGTGCGACAATTTCGATTCCAGGAAGCGGGCATGGGCAAGCAGTTTCAATTCACGCACCCGTGTGGGTGCGACCGCTAAAAAACGGGTTAAGAACGCACTCCAAAGGGTTTCAATTCACGCACCCGTGTGGGTGCGACCCGCGGAAATGCCTATGCGGGCCATCTGGTAGGGTTTCAATTCACGCACCCGTGTGGGTGCGACGGGAGTCAGCATAAAGGCCGCCGCTATATCTTTCGGTTTCAATTCACGCACCCGTGTGGGTGCGACCGTCAGCAAAAAGACATTGCCCTGATTGCGGAACAGGTTTCAATTCACGCACCCGTGTGGGTGCGACCATGTTAATTATTTGTAATTTGTCATACAACCTTGTTTCAATTCACGCACCCGTGTGGGTGCGACAATAAGGGGCGGTGAACAAAACAATCAACCAAACAGTTTCAATTCACGCACCCGTGTGGGTGCGACCTGGACATGGACACTTCTGTGCGCAGGCAATAAAGTTTCAATTCACGCACCCGTGTGGGTGCGACATCTTTTGGATTTAAATTGTAAATGTTCCATGTGGTTTCAATTCACGCACCCGTGTGGGTGCGACCGCACCGGAGAAGTTGAAACAATCATGGAAACTGTTTCAATTCACGCACCCGTGTGGGTGCGACCGCATGAACAAAAAACTTATTAGAGTTGATAAAGTTTCAATTCACGCACCCGTGTGGGTGCGACTAGGAGATTGATTTTCAGAATAGAGAGCCGTCCGGTTTCAATTCACGCACCCGTGTGGGTGCGACACAAGCGGACAAGACATGTTGGCCCCCGCGCCGGGTTTCAATTCACGCACCCGTGTGGGTGCGACCCCTTTGATGCATTCAATTTATCATTATTTTTTAGTTTCAATTCACGCACCCGTGTGGGTGCGACCTTTTGCGGCGAAATGGGCCTGCCCGCATACGATGTTTCAATTCACGCACCCGTGTGGGTGCGAC

>CP025827|2|2|1910443-1912166|PILER-CR
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TTTAGGGCCTTAGTATATTTTTTATATCATTTTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCGTCAACATGGGTGCGCATTGGCTTTTCTGCCTC
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	GAAAAAGCAGGGGAACCGCATTAAAAGCGAGCTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCATACCGCCGTCATGGACTTGCACAAGACGGTGT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TTGTTGCTAGCCTTGAGAGAACCATCACCGTTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CAACACGATACGGTTATAAGTGTTTTTATCTATT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCAGGATTCAAATCGTGGAAAGGAGGGGGGCAT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	GTCATCTCCCAGAATTGGCAGGACGTAGCATTCA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TTTGCCACCCCTGCCCGACCGGACCCGGGGTAAAC
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TAGAAAGACAATAGACTATGAATAAAGACAAACT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCCCATGTAGTCGCAACCATTAACCTTATCGCCG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	AATTTCGATTCCAGGAAGCGGGCATGGGCAAGCA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCTAAAAAACGGGTTAAGAACGCACTCCAAAGG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCGCGGAAATGCCTATGCGGGCCATCTGGTAGG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	GGGAGTCAGCATAAAGGCCGCCGCTATATCTTTCG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGTCAGCAAAAAGACATTGCCCTGATTGCGGAACAG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CATGTTAATTATTTGTAATTTGTCATACAACCTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	AATAAGGGGCGGTGAACAAAACAATCAACCAAACA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CTGGACATGGACACTTCTGTGCGCAGGCAATAAA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	ATCTTTTGGATTTAAATTGTAAATGTTCCATGTG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCACCGGAGAAGTTGAAACAATCATGGAAACT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCATGAACAAAAAACTTATTAGAGTTGATAAA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TAGGAGATTGATTTTCAGAATAGAGAGCCGTCCG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	ACAAGCGGACAAGACATGTTGGCCCCCGCGCCGG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCCTTTGATGCATTCAATTTATCATTATTTTTTA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CTTTTGCGGCGAAATGGGCCTGCCCGCATACGAT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC

>CP025827|2|2|1910443-1912166|CRISPRCasFinder
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TTTAGGGCCTTAGTATATTTTTTATATCATTTTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCGTCAACATGGGTGCGCATTGGCTTTTCTGCCTC
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	GAAAAAGCAGGGGAACCGCATTAAAAGCGAGCTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCATACCGCCGTCATGGACTTGCACAAGACGGTGT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TTGTTGCTAGCCTTGAGAGAACCATCACCGTTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CAACACGATACGGTTATAAGTGTTTTTATCTATT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCAGGATTCAAATCGTGGAAAGGAGGGGGGCAT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	GTCATCTCCCAGAATTGGCAGGACGTAGCATTCA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TTTGCCACCCCTGCCCGACCGGACCCGGGGTAAAC
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TAGAAAGACAATAGACTATGAATAAAGACAAACT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCCCATGTAGTCGCAACCATTAACCTTATCGCCG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	AATTTCGATTCCAGGAAGCGGGCATGGGCAAGCA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCTAAAAAACGGGTTAAGAACGCACTCCAAAGG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCGCGGAAATGCCTATGCGGGCCATCTGGTAGG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	GGGAGTCAGCATAAAGGCCGCCGCTATATCTTTCG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGTCAGCAAAAAGACATTGCCCTGATTGCGGAACAG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CATGTTAATTATTTGTAATTTGTCATACAACCTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	AATAAGGGGCGGTGAACAAAACAATCAACCAAACA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CTGGACATGGACACTTCTGTGCGCAGGCAATAAA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	ATCTTTTGGATTTAAATTGTAAATGTTCCATGTG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCACCGGAGAAGTTGAAACAATCATGGAAACT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCATGAACAAAAAACTTATTAGAGTTGATAAA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TAGGAGATTGATTTTCAGAATAGAGAGCCGTCCG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	ACAAGCGGACAAGACATGTTGGCCCCCGCGCCGG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCCTTTGATGCATTCAATTTATCATTATTTTTTA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CTTTTGCGGCGAAATGGGCCTGCCCGCATACGAT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC

>CP025827|2|2|1910443-1912166|CRT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TTTAGGGCCTTAGTATATTTTTTATATCATTTTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCGTCAACATGGGTGCGCATTGGCTTTTCTGCCTC
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	GAAAAAGCAGGGGAACCGCATTAAAAGCGAGCTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCATACCGCCGTCATGGACTTGCACAAGACGGTGT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TTGTTGCTAGCCTTGAGAGAACCATCACCGTTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CAACACGATACGGTTATAAGTGTTTTTATCTATT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCAGGATTCAAATCGTGGAAAGGAGGGGGGCAT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	GTCATCTCCCAGAATTGGCAGGACGTAGCATTCA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TTTGCCACCCCTGCCCGACCGGACCCGGGGTAAAC
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TAGAAAGACAATAGACTATGAATAAAGACAAACT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCCCATGTAGTCGCAACCATTAACCTTATCGCCG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	AATTTCGATTCCAGGAAGCGGGCATGGGCAAGCA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCTAAAAAACGGGTTAAGAACGCACTCCAAAGG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCGCGGAAATGCCTATGCGGGCCATCTGGTAGG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	GGGAGTCAGCATAAAGGCCGCCGCTATATCTTTCG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGTCAGCAAAAAGACATTGCCCTGATTGCGGAACAG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CATGTTAATTATTTGTAATTTGTCATACAACCTT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	AATAAGGGGCGGTGAACAAAACAATCAACCAAACA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CTGGACATGGACACTTCTGTGCGCAGGCAATAAA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	ATCTTTTGGATTTAAATTGTAAATGTTCCATGTG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCACCGGAGAAGTTGAAACAATCATGGAAACT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CGCATGAACAAAAAACTTATTAGAGTTGATAAA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	TAGGAGATTGATTTTCAGAATAGAGAGCCGTCCG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	ACAAGCGGACAAGACATGTTGGCCCCCGCGCCGG
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CCCTTTGATGCATTCAATTTATCATTATTTTTTA
GTTTCAATTCACGCACCCGTGTGGGTGCGAC	CTTTTGCGGCGAAATGGGCCTGCCCGCATACGAT
GTTTCAATTCACGCACCCGTGTGGGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP025827.1\|QAA46256.1\|1896865_1897966_+\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271175
CP025827.1\|QAA46269.1\|1920602_1921385_-\|enoyl-ACP-reductase	unknown	unknown	gnl\|CDD\|223696
CP025827.1\|QAA46255.1\|1894407_1896546_-\|glycoside-hydrolase-family-2	unknown	unknown	gnl\|CDD\|236657
CP025827.1\|QAA46265.1\|1916126_1917326_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|237367
CP025827.1\|QAA46263.1\|1915426_1915690_+\|30S-ribosomal-protein-S20	unknown	unknown	gnl\|CDD\|376586
CP025827.1\|QAA46270.1\|1921452_1922328_-\|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase	unknown	unknown	gnl\|CDD\|223268
CP025827.1\|QAA46264.1\|1915770_1915992_+\|hypothetical-protein	unknown	unknown	unknown
CP025827.1\|QAA46266.1\|1917324_1918455_+\|dihydrouridine-synthase	unknown	unknown	gnl\|CDD\|239200
CP025827.1\|QAA46267.1\|1918467_1919607_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376628
CP025827.1\|QAA46261.1\|1908941_1909775_-\|secretion-protein	unknown	unknown	gnl\|CDD\|367948
CP025827.1\|QAA46258.1\|1901280_1902168_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235906
CP025827.1\|QAA46257.1\|1899997_1901200_-\|carboxynorspermidine-decarboxylase	unknown	unknown	gnl\|CDD\|143502
CP025827.1\|QAA46260.1\|1907729_1908626_-\|phosphatidylserine-decarboxylase	unknown	unknown	gnl\|CDD\|179097
CP025827.1\|QAA47030.1\|1898036_1899974_-\|biosynthetic-arginine-decarboxylase	unknown	unknown	gnl\|CDD\|235427
CP025827.1\|QAA47032.1\|1904339_1906913_+\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
CP025827.1\|QAA47033.1\|1912654_1914508_-\|acetolactate-synthase,-large-subunit,-biosynthetic-type	unknown	unknown	gnl\|CDD\|215261
CP025827.1\|QAA46259.1\|1906937_1907591_+\|ribulose-phosphate-3-epimerase	unknown	unknown	gnl\|CDD\|238244
CP025827.1\|QAA46268.1\|1919603_1920461_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224513
CP025827.1\|QAA47031.1\|1902484_1904149_-\|sulfatase	unknown	unknown	gnl\|CDD\|293763
CP025827.1\|QAA46262.1\|1914657_1915266_-\|beta-phosphoglucomutase-family-hydrolase	unknown	unknown	gnl\|CDD\|213673

Protein	Function_ID	Function_description	E-value
CP025827.1\|QAA46256.1\|1896865_1897966_+\|site-specific-integrase	gnl\|CDD\|271175	cd00397, DNA_BRE_C, DNA breaking-rejoining enzymes, C-terminal catalytic domain. The DNA breaking-rejoining enzyme superfamily includes type IB topoisomerases and tyrosine based site-specific recombinases (integrases) that share the same fold in their catalytic domain containing conserved active site residues. The best-studied members of this diverse superfamily include Human topoisomerase I, the bacteriophage lambda integrase, the bacteriophage P1 Cre recombinase, the yeast Flp recombinase, and the bacterial XerD/C recombinases. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA. The enzymes differ in that topoisomerases cleave and then rejoin the same 5' and 3' termini, whereas a site-specific recombinase transfers a 5' hydroxyl generated by recombinase cleavage to a new 3' phosphate partner located in a different duplex region. Many DNA breaking-rejoining enzymes also have N-terminal domains, which show little sequence or structure similarity.	1.00372e-12
CP025827.1\|QAA46269.1\|1920602_1921385_-\|enoyl-ACP-reductase	gnl\|CDD\|223696	COG0623, FabI, Enoyl-[acyl-carrier-protein].	2.77822e-127
CP025827.1\|QAA46255.1\|1894407_1896546_-\|glycoside-hydrolase-family-2	gnl\|CDD\|236657	PRK10150, PRK10150, beta-D-glucuronidase; Provisional.	6.66008e-54
CP025827.1\|QAA46265.1\|1916126_1917326_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|237367	PRK13371, PRK13371, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Provisional.	0
CP025827.1\|QAA46263.1\|1915426_1915690_+\|30S-ribosomal-protein-S20	gnl\|CDD\|376586	pfam01649, Ribosomal_S20p, Ribosomal protein S20. Bacterial ribosomal protein S20 interacts with 16S rRNA.	1.24995e-16
CP025827.1\|QAA46270.1\|1921452_1922328_-\|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase	gnl\|CDD\|223268	COG0190, FolD, 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism].	6.16508e-143
CP025827.1\|QAA46266.1\|1917324_1918455_+\|dihydrouridine-synthase	gnl\|CDD\|239200	cd02801, DUS_like_FMN, Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.	1.6243e-54
CP025827.1\|QAA46267.1\|1918467_1919607_+\|hypothetical-protein	gnl\|CDD\|376628	pfam01841, Transglut_core, Transglutaminase-like superfamily. This family includes animal transglutaminases and other bacterial proteins of unknown function. Sequence conservation in this superfamily primarily involves three motifs that centre around conserved cysteine, histidine, and aspartate residues that form the catalytic triad in the structurally characterized transglutaminase, the human blood clotting factor XIIIa'. On the basis of the experimentally demonstrated activity of the Methanobacterium phage pseudomurein endoisopeptidase, it is proposed that many, if not all, microbial homologs of the transglutaminases are proteases and that the eukaryotic transglutaminases have evolved from an ancestral protease.	1.27902e-12
CP025827.1\|QAA46261.1\|1908941_1909775_-\|secretion-protein	gnl\|CDD\|367948	pfam04450, BSP, Peptidase of plants and bacteria. These basic secretory proteins (BSPs) are believed to be part of the plants defense mechanism against pathogens.	4.24201e-61
CP025827.1\|QAA46258.1\|1901280_1902168_+\|hypothetical-protein	gnl\|CDD\|235906	PRK07003, PRK07003, DNA polymerase III subunit gamma/tau.	0.00912155
CP025827.1\|QAA46257.1\|1899997_1901200_-\|carboxynorspermidine-decarboxylase	gnl\|CDD\|143502	cd06829, PLPDE_III_CANSDC, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Carboxynorspermidine Decarboxylase. Carboxynorspermidine decarboxylase (CANSDC) catalyzes the decarboxylation of carboxynorspermidine, the last step in the biosynthesis of norspermidine. It is homologous to eukaryotic ornithine decarboxylase (ODC) and diaminopimelate decarboxylase (DapDC), which are fold type III PLP-dependent enzymes that contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain, similar to bacterial alanine racemases. Based on this similarity, CANSDC may require homodimer formation and the presence of the PLP cofactor for its catalytic activity.	0
CP025827.1\|QAA46260.1\|1907729_1908626_-\|phosphatidylserine-decarboxylase	gnl\|CDD\|179097	PRK00723, PRK00723, phosphatidylserine decarboxylase; Provisional.	9.77305e-125
CP025827.1\|QAA47030.1\|1898036_1899974_-\|biosynthetic-arginine-decarboxylase	gnl\|CDD\|235427	PRK05354, PRK05354, biosynthetic arginine decarboxylase.	0
CP025827.1\|QAA47032.1\|1904339_1906913_+\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
CP025827.1\|QAA47033.1\|1912654_1914508_-\|acetolactate-synthase,-large-subunit,-biosynthetic-type	gnl\|CDD\|215261	PLN02470, PLN02470, acetolactate synthase.	0
CP025827.1\|QAA46259.1\|1906937_1907591_+\|ribulose-phosphate-3-epimerase	gnl\|CDD\|238244	cd00429, RPE, Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.	4.95763e-106
CP025827.1\|QAA46268.1\|1919603_1920461_+\|hypothetical-protein	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	9.57291e-43
CP025827.1\|QAA47031.1\|1902484_1904149_-\|sulfatase	gnl\|CDD\|293763	cd16144, ARS_like, uncharacterized arylsulfatase subfamily. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	2.28621e-174
CP025827.1\|QAA46262.1\|1914657_1915266_-\|beta-phosphoglucomutase-family-hydrolase	gnl\|CDD\|213673	TIGR02009, Hypothetical_protein_Rv3400/MT3508/Mb3433., beta-phosphoglucomutase family hydrolase. This subfamily model groups together three clades: the characterized beta-phosphoglucomutases (including those from E.coli, B.subtilus and L.lactis, TIGR01990), a clade of putative bPGM's from mycobacteria and a clade including the uncharacterized E.coli and H.influenzae yqaB genes which may prove to be beta-mutases of a related 1-phosphosugar. All of these are members of the larger Haloacid dehalogenase (HAD) subfamily IA and include the "variant 3" glu-asp version of the third conserved HAD domain (TIGR01509).	2.66073e-52

>CP025827.1|QAA46261.1|1908941_1909775_-|secretion-protein
MKRYYLVSGLCLCLFMGIFSCIPEAPEHKTEKDASAIVLDEDSDIIWRNFSLGRISFDDKAPHSKGSRIFHRLIPDTEVYIRQLSRIVLHTLYERPEECIIPVHHLRFMLDDTEGVACKWGGNGEVAISCSTRHIESLFKDDDDAAKVYFEIRGVLLHELTHVYQQEPQGIGSYGTNREFRAFIEGMADAVRIANGGFHRGAYRPTGGSYMDGYLHAGYFFVWLRDYKDPEFLRKFNRSALEVVPWSFDGAVKYALGSEYHIDELWREYQRVMEEEK
>CP025827.1|QAA46260.1|1907729_1908626_-|phosphatidylserine-decarboxylase
MEGIRYYNRYTGREEREQVPGEKYMQWIYGTASGKAALHVLIKRGVFSRLLGWLKNRPSSARSIPSFVEEYGINMEDSLKGMGEFRHFNDFFYRRLKPGARPLAGGEDTAVFPADARHMGWERADRIKNVFVKGQRFDLPSLLGSDTLAERYAAGAVVLSRLCPTDYHRFHFPVSGVPGPWTKLGGPLASVSPYCLRGRLAWLWTNKRNLTLIRSELWGEVAMLEVGATGVGLIEETYVPGVFSARGAEKGYFAFGGSTVMCFFEPGKVSLVSDLLEKTEEGLELFARQGDMMGTAAT
>CP025827.1|QAA46259.1|1906937_1907591_+|ribulose-phosphate-3-epimerase
MTMISPSLLAADFSRIGEEARRAFDSGADWLHLDIMDGHFVDNISFGPEICAAVRKAVGPDRFLDAHLMIERPDHYFDRFVRAGVNLICFHVELGDSYYIRNTLGRIREAGVKNGLALNPATPFETVEPYLAEIDLLLVMSVVPGFGGQSFMPSVLDKVEKAAEWRTENRASFLIQMDGGIGQNNAAQCALAGADVLVAGSSTFKAPDMARAIAEMK
>CP025827.1|QAA47032.1|1904339_1906913_+|leucine--tRNA-ligase
MSERKKPYPFDVFESKWQQIWDERKTFKVNNPGEEGFDASKPKYYVLDMFPYPSGAGLHVGHPEGYTATDIVARFKRMNGFNVLHPMGWDSFGLPAEQYAIKTGQHPSVTTFRNIDNFRRQLKMLGFSYDWDREIATTDHEYVRWTQWIFLQLYNSYYNKELKKARPVSELEEQGLSREEIDQRRLAYVAEAAVNWSPDLGTVLANEEVEEWKSKGHRVERRPLRQWMLRITDYAERLIDELEPLDWPESIKLLQRNWIGKSEGAEVDFTLDGETITVYTTRPDTLFGATYMVLSPEHPLVDTVTTPEQKHAVEQYRAQCASKSDLERTDLSKEKTGVFTGAYAVNPVNGKQIPVWIADYVLMGYGTGAIMAVPAHDERDFAFAQVFGLPILQVVQPPSEDTDWRGFCGYEGSSVNSGFLTGLPTPEAKEKMILWLEENGKGRRKVNYKLRDWLFSRQRYWGEPFPIVWENGRHRALPESELPVLQPDLDDFAPTGDPRGPLVKAAEWIAYTPTAHRETNTMPQWAGSCWYYLRYLDPANTERFVSREAEQYWMGSAGSPGGVDLYVGGTEHAVLHLLYARFWHKVLFDLGYLSTNEPFQKLVNQGLILGEDGQKMSKSRGNVVNPDDIVREYGADSLRLYEMFMGPLKDVKPWATKGVEGISRFLARVWRVAFRENQEGEWEINSKLVENAPEAGVLAVRKELHKTIKKVTEDINGMSFNTAIAKMMECTNAMTSADVVDVQDYDAFLTLLNPFAPHLTEEIHSRLQTAFPALAQTQLCQKSWPEWEEALLEENTVPMVIQVNGKLRDKLEVPKDISREELEKQALASAKVKTFLDGVTVRKVIVVPGRLVNIVAN
>CP025827.1|QAA47031.1|1902484_1904149_-|sulfatase
MSAVCGVLFLFAGASALGNGSNTVSGKKPNIIVFLVDDMGWQDTSHPFWSDSQGNPKKTFLNRRYRTPNMEKLASQGMTFTDAYAHPLCTPSRVSLMSGMNPARHRVTCWVREQNGTTDANSRSLLPPDWALNGLQPIGTPARGTTKRPISGEDMRYHMTRPFATAATLPEMLKKCGYVTVHCGKAHFGTQGTPGSNPLNMGFDYNIAGTEIGHPADYRGSRHYGKGFNHVRGLDENNYYQDDVFLTEALTREAIKRLEAIRTNPREAGKPFYLYMAHYALHSPLDERAYDKRFADAYKNPEDGHKWSRTEKHYSGLIEGMDKSLGDIMKYLREHHLEKNTVLVFMSDNGGLAISGRLGNEEANYPLSFGKGSCMEGGIREPMIVSWPGVTKGGSRCAVPVVIDDFFPTLLDIAGCRNVEVPQKLDGLSLVPLLKGGRFPEDRPLLFHQPNNWGEGSRQAPQYTSSTALRQGDWKLIYRHLTQSFELYHLRKDIGEKKNLASREPRKTREMAVVMGRLLRERKAQMPTYKKDNELGAPAGSSVPWPDQVKGNGF
>CP025827.1|QAA46258.1|1901280_1902168_+|hypothetical-protein
MRTPSPLPPAPRIKRKRQKTAQNGTSCILFLEMGCIFLFYNVTIAIAMTNIHPFTTAAACILTAGAALFTSSCQPASPESYARQFATAQHVSVHGYNGRETLTSRVYADWGSMPANARRAMEEYIKGAEWKTMDYIRPQYFIQVDRSFWAICIDNDGNMTGIIPFRNGKDARKMSVNNHFKMLVNTTDRAPALGYAILKNLAYADGLRVSTRKADGLETPVPAPPAMKIVVPPKGAAPSAAPAAKSAATSVSEPGATEETPADDTAGTEEEPSADSAAESEDTTATDDAAVTDDF
>CP025827.1|QAA46257.1|1899997_1901200_-|carboxynorspermidine-decarboxylase
MSAFIISLPALERNALILRDVADAAGCRIALALKGFSCWPCFEALSPWLDGCCASGLWEARLARRRFGKHVLTYSPGHAPEEIAELAEISSHLDFNSLTQWSRFREEVMRHPRFVSGELKCGLRVNPQCSTGHTPIYDPCAPGSRLGVTPDMMQGADLSGISGLHFHTLCEQGADDLAVTMDAVERHFGHLLSRPEISWLNMGGGHWITKPDYDRKLLAALIRRIRERYGVEVWLEPGEAAAIHTGVLRCRVLDLFSAEGVNHAILDVSASAHMPDTLEMPYRPDVFQIAGDASLRSAQQPAVRLEGESYALAGKAGEKAYTYRLGAPTCLAGDRLGDYSFAEPLAVGDELVFDDMAHYTMVKTTFFNGVRHPDIAVQRKDGSVETVRRFSYEDFEARLG
>CP025827.1|QAA47030.1|1898036_1899974_-|biosynthetic-arginine-decarboxylase
MAAAKEGIKQKVRGWSHHDSADLYGIDDWGNGYFRISKKGEVTVRLNDEDGGKKDVSLCDLLEGLKERGTTVPVLFRFRDLLRSRIAELNDSFRKAIKEAGYQGKYQGVYPIKVNQQRQVVEEIAEFGTKYDYGLEAGSKPELIAAMAHMHNPNAYLICNGYKDDEFIDLALTAQKMGLNIFIVLEMPSELDVILERARRMDIRPNLGVRVKLAAKGSGLWQESAGDKSVFGLNAAQVVDVVDKLKQVDALDCLKLLHYHQGSQIPNISVVREGLTEAVRIYVDLVKEGAPLGTLDMGGGLAVDYDGSKTNFHSSCNYSIAEFARDVVEVVGDMCSKYGVPHPTLVTESGRAVVAYYSVLVFNVLDVTSAPGEEPPPELPDDAPELLKAFADTDRTLARKNMQECYNDACYYRDQLRAQFFYGNATLRQRGLGEAYYWHILSRISRMLAEMETIPEDLRELSCSMVDFYYGNFSLFQSLPDSWAIRQLFPVMPLHRLNERPTNKAVLADITCDCDGKIDHFIDREDVATALPLHAIKPGEDDYYIGVFLVGAYQETLGDLHNLLGDTNVVGVHLEGGRPVYTHEVEGDTVSDVLSYVEYDPKELINKFRTFAEQAVAEGKISPSERRRALEVFRSGLNGYTYYEL
>CP025827.1|QAA46256.1|1896865_1897966_+|site-specific-integrase
MNMKKAPNTNKLKYVGAALLEGESVTLIQAARLVLEIKEALGDEICTITRCREVVSLGLNAIKNKHQTVSFGTAAVECLRSKSHRRPRTLTDIRSIIHKLKKSNPELEHTSLRNLSVEECQNILMNTFTTSRQRHKARLILSGIFSFSVKRGWCDENPILRVDTPFLQEQEIPALTLKEITQLLKAAMEEFDGSCAAGAALMIFAGIRPQEVERLLWENIALRDGCIILNSKHTKTGGARHVTILPVLAKWLKFCRDRTKPGPGTPICPKGWTIKWRKIRKKAGWGGRKKSWVPDCLRHTYASYHAKHFKDYNLLQMEMGHRSSSLLRTRYLNMKGISPQTATRFWALTPAKVIEETKPPEEPLVS
>CP025827.1|QAA46255.1|1894407_1896546_-|glycoside-hydrolase-family-2
MNIRIHSFNVSCVGLCCVLGSFFAADAREVYPLNGSWDFSFNGKPAEKVTVPHTWNAEDAANGAQGKREDAKSVNSDAYRRGPAVYSRTLPVEPRPGKRYFIRGGGASIVSEVSVNGKPAGSHEGAFTAFCYEITPLLKKGSNTISVLVDNTQRNHIAPQRGDFSMFGGLYRPIELIETDGVCIDPLFYASPGVFITTKSLSKSKAEVEVKTLLNSDGKAGDVDVAVEILDMKGRKVAGKTVKAAAGEKNRLEVPVTLAIANPILWNGVKNPYLYQVKTSIRTADGQTDELVQPLGLRTVSVNPKEGFVLNGKTMQIKGVSRHQDMKGKGWALSPEDEARDIRLIADMGADGVRTGHYPASTNIYDLCDKAGLIVWSEVPNVNLVWDTPEFRENNRLQAREMIFQHWNHPSICMWGIFNEIGHQPEAATRGVDMEAELTELNKFVKETDPSRMTVGASNQAGRRKLNNIPDHIAFNTYPGWYGGGPETMKGNLNGYIRDYGGKMGIAVSEYGHGASVDMHENPAQRPSPTGFWHPEEWQSHAHEVNYRCIRERPEVWGAFVWNMFDFGSSSRFEGESPGINDKGLVTYDRKTPKDAYFFYRANWSPRPTVYITSRRFAERTEKTVPVKVYSNGSVVKLSVNGKPVGSVKPDDLKRAVWPEVTLKPGVNTITATASIGGKTYTDSCKWTLNPAGGDGKKDSERYQDPSLKKYK
>CP025827.1|QAA47033.1|1912654_1914508_-|acetolactate-synthase,-large-subunit,-biosynthetic-type
MSTNDKTSSAPTKTRMTGAEVLVECLVREGVDVVFAYPGGASMPIHQALSHQPKIRTILPRHEQGGAFGAEGYGRVTGKVGVCISTSGPGATNMITSIADAYLDSTPLVAITAQVMRSLIGRGAFQETDVFGMTAPIVKHSYLVTEPEELPRIIKEAFYIASTGRPGPVLIDMPKDVQEAVFTPDFDMEMDIPGYNPVLPVPADKLEELIPLIENARRPVIYAGGGIISAEASGDLLEFAERSQIPVATTLMGIGAMPETHPLSLRWLGMHGAVFANNAVNEADLVIALGARFDDRVTGAVNMFCPESTIVHIDIDASEINKNKKVAYPIRANVKDALQVLNSALAAKGWERKSSGYTRTPEWFGVIDGWKKQYPFSYEDRKGYIAPQAVIEELYRQTADKDPIICTGVGQHQMFAAQFFKFDKPRRLATSGGLGTMGYGLPASMGACLAYPDRLVVNIDGDGSMLMNIQELATIHVERLPVKCIILNNQHLGMVVQWEDLKYDSNRAQTFLADPHDNYDPTHKTEDVIYPNYPLICAGFGVKCERVLRIEELPAAITRMIESPEAYVLDVMVPHDVHVLPMILGGMSYKDVILERIAGDGSAKKASELGKEIPTAL
>CP025827.1|QAA46262.1|1914657_1915266_-|beta-phosphoglucomutase-family-hydrolase
MKKRVDLPEKKYEGYIFDLDGTLVDSMPLHYRAWREALARAGAPDHVFRADEFYSCGGKSANDVVRFLNERYGMHMDAASTAADKRRIYLEMLEKEGMQPIREVVEFVHSLGDAPKAIATGSAMPGASRTLAAAGLSGLFDVILTPDEVEHGKPAPDMFLKAAELLGVSPDRCVVFEDAEPGMKAAAAAGMDCVQVRRPSLA
>CP025827.1|QAA46263.1|1915426_1915690_+|30S-ribosomal-protein-S20
MANTKSALKRIRQTATRTARNRAVTSKLKTLRKKVAAAVETSDKEAAAAAYNTFSSAVDKAAKVGTIPANRAANYKSKAAKAIAKIA
>CP025827.1|QAA46264.1|1915770_1915992_+|hypothetical-protein
MQQSRLDKAKLIIDRPGDFKVCEACGSIVSLTTAVCPNCNAYRFDSNTEYVVEQAVLLASREQRSVTPEDLEI
>CP025827.1|QAA46265.1|1916126_1917326_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MNQDSTRKARVNVRRAEVMEQVEKEIQQHYQSELISHIRSAGNVYNLGHTEFFLAREFGFCNGVRRAIDIAYAARRVFPDRRIFLIGDIIHNPEVNRQLEEMGIRKLPWKQLDSSYDRVAPDDVVIIPAFGVPTPFMDALEEKGVQIVDTTCGDVMKVWKRVKNYAAMGITSIIHGKATHEETSATASRALGERGRGKYLVVYDLEDARILCDYIMGRGDREAFLKRFEGCCSPGFDPDRDLEEVGIANQTTMLKTETQTLQKMVKDAIVQRDGDDDNFYVFDTICGATQDRQDALYELLKNPLDVMFVVGGYNSSNTTHLVDIAREHVPTYFIESAECIKSIQYVDAFDTKTREVRCMTTEPVVQNLGKSLKVGITAGASCPANLIEATILRIADLRK
>CP025827.1|QAA46266.1|1917324_1918455_+|dihydrouridine-synthase
MLPASTLSFFRQDNHSLPTGAFHGMHRPMLLALAPMKDVTDLAFLNTLKDLNSLPDYFITEYFRTVAHHKKMSPYILRSIDENPTGRPIYGQLVGHEPEYLARDAQVLMEHACAGVDLNMGCPAPIVCRRNAGGGMLRSLKAMDAALGALRDVLPPGAFTVKCRLGYETPDEFERILPVIASHSPDRVCIHARTVREGYRSPVHPEWVKWAAGMLKCPVVANGNIVDAATAEAWVRLARPAGLMIGRAALRNPWIFSQLHSRFQGHPAADLTFRNVLHYIRRLYERTREMQEHYVEEKHIHRMKKYLVYTARGLPDTFDHYMKRAKTARDFMRICEDILDNDAPFAPTPPEDTHLFAHFHTLLAQEEACLPPGIQV
>CP025827.1|QAA46267.1|1918467_1919607_+|hypothetical-protein
MNLLPFALLPGLTAAICAAHDAMQDGVEFLRAHMPAQDRGTVTQERLVREVRLALAARSQFPWAAQVPWELYENNVLPYAVVNEPRDEWREQFHHLFAPLVSPCKTGREAALAIASRIQKTLNVRYSTERRVPHQGVKESLQSGKVSCTGQSILLICALRSVGIPARMAGVLTWNHVRGNHNWVEAWCDGEWKMLEYNEKDFNTPWVMSAISMLNPCKPENAIYATSWKKEPSGAFFPMIWEARYDDKRHVLAFPPESRTVPAVNITDRYMKLANEWVAAQPEYVPGSRLMLDIREERKNGARRLPLHVVLKSEEGKVLAEGITPGPSDDMRKFLEVLLPDNISRGMLEFKLPDGTVRHEPVAHTEAPVQILNFFVSAP
>CP025827.1|QAA46268.1|1919603_1920461_+|hypothetical-protein
MKIPLFFNNTARSARAGRFRRWLDRHRDFFDVIEPESREDMLNHLVSQANSGAPAVAVAGGDGTLGIAARALCNTETVLAPFPAGTMNVFSREIGIHPDFDHALHILNTGRSKNVDLFAFNGQVFLQMAGIGADARAVELTTWEMKKKWKALAYVIAGARVCTEKQPHLTLTTDEGRVLEGRFIIFGNGRKYGGPLNFFAEADNSDGLLDAVVFRHSITSIIGEFLMAAVQGGFHSRRSGSFEYIRMTGGTVTSAGQASCELDGDYAGNAPVRITRPGSLKVFVP
>CP025827.1|QAA46269.1|1920602_1921385_-|enoyl-ACP-reductase
MSSKLLEGKVGVVVGVANKRSIAFAIAKAWHEAGAKLIFNYQGERLKDGVLKLIHENFGEDVPVYDLDVSSDESVNAFFERVRQHTDKVDCLLHSVAFAPKEALGGSFLETGREAFKISLDISAYSLVALSRAVEPMMSDNGSILAMSYLGSEKVVPNYNLMGVSKAALEACTRYLAYDLGRSRGIRVNCISAGPMQTLAARGVSGFNTMFKVYEEHAPLGRSCTGEELGATGVFLASDGAAAITGQVIYVDGGYQIMGM
>CP025827.1|QAA46270.1|1921452_1922328_-|bifunctional-5,10-methylene-tetrahydrofolate-dehydrogenase/5,10-methylene-tetrahydrofolate-cyclohydrolase
MQIIDGKQVASQVLEEVERDIARLREQGITPGLAVVLVGEDPASQVYVNSKVKKCAELGMNSRKIVLPSDASQEELLRIVRELNVDPSVHGILVQSPPPPHIDEAAVVLEIDPAKDVDGFHPENVAKLVLEDETGFVPCTPLGCMRLLKAAGIETAGANAVVIGRSMIVGKPMAHLLMSKQANATVTVAHSRTKNLPELCRSADIIVAAIGRPAFVTADFVKDGAVVVDVGINRVEDASAKRGYRIVGDVAYDEVAPKCRAITPVPGGVGPMTIAMLMANTVKACRQQTGA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP025827_2	2.19\|1911649\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1911649-1911682	34	CP025827.1	713448-713481	0	1.0

1. spacer 2.19|1911649|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to position: 713448-713481, mismatch: 0, identity: 1.0

ctggacatggacacttctgtgcgcaggcaataaa	CRISPR spacer
ctggacatggacacttctgtgcgcaggcaataaa	Protospacer
**********************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025827_2	2.12\|1911191\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1911191-1911224	34	NZ_AP021899	Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence	22660-22693	2	0.941
CP025827_1	1.58\|1422296\|33\|CP025827\|CRISPRCasFinder,CRT	1422296-1422328	33	NZ_CP049142	Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence	141785-141817	6	0.818
CP025827_1	1.14\|1419353\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419353-1419386	34	CP006880	Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence	922188-922221	7	0.794
CP025827_1	1.15\|1419420\|35\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419420-1419454	35	MK937606	Microbacterium phage Margaery, complete genome	2843-2877	8	0.771
CP025827_1	1.23\|1419956\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419956-1419988	33	NC_017957	Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence	343834-343866	8	0.758
CP025827_1	1.23\|1419956\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419956-1419988	33	NZ_CP046568	Dietzia sp. DQ12-45-1b plasmid pI, complete sequence	14934-14966	8	0.758
CP025827_1	1.23\|1419956\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419956-1419988	33	NZ_CP023408	Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence	533018-533050	8	0.758
CP025827_1	1.23\|1419956\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419956-1419988	33	NZ_CP012918	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence	132836-132868	8	0.758
CP025827_1	1.24\|1420022\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1420022-1420055	34	NZ_CP050184	Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence	198286-198319	8	0.765
CP025827_1	1.25\|1420089\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1420089-1420122	34	NZ_CP050184	Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence	198286-198319	8	0.765
CP025827_2	2.1\|1910474\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1910474-1910507	34	MT774393	CrAssphage cr127_1, complete genome	5245-5278	8	0.765
CP025827_2	2.22\|1911843\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1911843-1911875	33	NZ_MK715471	Arcobacter cryaerophilus strain M830MA plasmid pM830MA, complete sequence	141338-141370	8	0.758
CP025827_1	1.5\|1418752\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1418752-1418785	34	KX957972	Vibrio parahaemolyticus plasmid pVPS91, complete sequence	66664-66697	9	0.735
CP025827_1	1.10\|1419086\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419086-1419119	34	NZ_CP045721	Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence	447145-447178	9	0.735
CP025827_1	1.10\|1419086\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419086-1419119	34	NZ_CP022517	Pantoea vagans strain FBS135 plasmid pPant1, complete sequence	486786-486819	9	0.735
CP025827_1	1.15\|1419420\|35\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419420-1419454	35	NZ_CP012698	Microbacterium sp. No. 7 plasmid A, complete sequence	15168-15202	9	0.743
CP025827_1	1.23\|1419956\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419956-1419988	33	NC_023286	Streptomyces sp. F12 plasmid pFRL6, complete sequence	177153-177185	9	0.727
CP025827_1	1.23\|1419956\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419956-1419988	33	NC_023283	Streptomyces sp. FR1 plasmid pFRL3, complete sequence	244336-244368	9	0.727
CP025827_1	1.23\|1419956\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419956-1419988	33	NC_023284	Streptomyces sp. F2 plasmid pFRL4, complete sequence	311118-311150	9	0.727
CP025827_1	1.27\|1420223\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1420223-1420256	34	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	1690106-1690139	9	0.735
CP025827_1	1.27\|1420223\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1420223-1420256	34	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	442255-442288	9	0.735
CP025827_1	1.29\|1420357\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1420357-1420389	33	NZ_LR214939	Mycoplasma salivarium strain NCTC10113 plasmid 2	13946-13978	9	0.727
CP025827_2	2.20\|1911714\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1911714-1911747	34	MN693925	Marine virus AFVG_250M1114, complete genome	32384-32417	9	0.735
CP025827_2	2.21\|1911779\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1911779-1911811	33	CAJCJZ010000002	Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence	57465-57497	9	0.727
CP025827_2	2.21\|1911779\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1911779-1911811	33	MT119360	Enterococcus phage nattely, complete genome	26618-26650	9	0.727
CP025827_2	2.25\|1912037\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1912037-1912070	34	AP013817	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S44-C148, * SEQUENCING IN PROGRESS *	11158-11191	9	0.735
CP025827_2	2.25\|1912037\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1912037-1912070	34	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	83098-83131	9	0.735
CP025827_2	2.25\|1912037\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1912037-1912070	34	NC_031046	Staphylococcus phage BP39, complete genome	1742-1775	9	0.735
CP025827_1	1.23\|1419956\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419956-1419988	33	NZ_CP013105	Paraburkholderia caribensis strain MWAP64 plasmid 2, complete sequence	117315-117347	10	0.697
CP025827_1	1.23\|1419956\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419956-1419988	33	NC_021229	Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919	102732-102764	10	0.697
CP025827_1	1.23\|1419956\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419956-1419988	33	NZ_CP017422	Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence	163415-163447	10	0.697
CP025827_1	1.29\|1420357\|33\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1420357-1420389	33	KC699836	Bacillus phage SIOphi, partial genome	19738-19770	10	0.697
CP025827_1	1.32\|1420556\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1420556-1420589	34	NZ_CP054621	Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence	756183-756216	10	0.706
CP025827_2	2.10\|1911061\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1911061-1911094	34	NC_011308	Listeria phage P40, complete genome	31949-31982	10	0.706
CP025827_1	1.22\|1419889\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1419889-1419922	34	NZ_CP040462	Enterococcus sp. M190262 plasmid pM190262, complete sequence	109051-109084	11	0.676
CP025827_2	2.10\|1911061\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1911061-1911094	34	NC_019730	Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02, complete sequence	112813-112846	11	0.676
CP025827_2	2.20\|1911714\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1911714-1911747	34	NZ_CP032858	Bacillus subtilis subsp. subtilis strain 2RL2-3 plasmid unnamed1, complete sequence	29054-29087	11	0.676
CP025827_2	2.20\|1911714\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1911714-1911747	34	NZ_CP032873	Bacillus subtilis subsp. subtilis strain 2KL1 plasmid unnamed1, complete sequence	50089-50122	11	0.676
CP025827_2	2.20\|1911714\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1911714-1911747	34	NZ_CP026534	Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence	102322-102355	11	0.676
CP025827_2	2.25\|1912037\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1912037-1912070	34	HQ698922	Acinetobacter phage ZZ1, complete genome	41325-41358	11	0.676
CP025827_2	2.25\|1912037\|34\|CP025827\|PILER-CR,CRISPRCasFinder,CRT	1912037-1912070	34	MK240351	Acinetobacter phage Henu6, complete genome	100384-100417	11	0.676

1. spacer 2.12|1911191|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP021899 (Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence) position: , mismatch: 2, identity: 0.941

aatttcgattccaggaagcgggcatgggcaagca	CRISPR spacer
aatttcgattccaggaaccgggcatgggcgagca	Protospacer
***************** ***********.****

2. spacer 1.58|1422296|33|CP025827|CRISPRCasFinder,CRT matches to NZ_CP049142 (Pseudomonas nitroreducens strain HBP1 plasmid pPniHBP1_1, complete sequence) position: , mismatch: 6, identity: 0.818

tagagagcgaggcaggccgcccggttgcctatt	CRISPR spacer
tggtgtgcgaggccggccgcccggtggcctatg	Protospacer
*.* * ******* *********** ******

3. spacer 1.14|1419353|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to CP006880 (Rhizobium gallicum bv. gallicum R602 plasmid pRgalR602c, complete sequence) position: , mismatch: 7, identity: 0.794

tccggatgctggaaaggctg-ttggagttggcccc	CRISPR spacer
gccggatgctggaaaggctgatcgaagccggcca-	Protospacer
 ******************* *.*.**..****

4. spacer 1.15|1419420|35|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to MK937606 (Microbacterium phage Margaery, complete genome) position: , mismatch: 8, identity: 0.771

cggatgccaccgggtgccgatgacgaacacccgcc	CRISPR spacer
ctcgtgccaccgggtgccgatgacgatgaccaggg	Protospacer
*  .**********************  *** *

5. spacer 1.23|1419956|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NC_017957 (Tistrella mobilis KA081020-065 plasmid pTM1, complete sequence) position: , mismatch: 8, identity: 0.758

ccacatggacgaccttgccgccgccgtagacgg	CRISPR spacer
ccagatcgacgaccttgccgccgccgccggtct	Protospacer
*** ** *******************. *..

6. spacer 1.23|1419956|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046568 (Dietzia sp. DQ12-45-1b plasmid pI, complete sequence) position: , mismatch: 8, identity: 0.758

ccacatggacgaccttgccgccgccgtagacgg	CRISPR spacer
cgacgtggacgacctcgccgccgccgacgctgc	Protospacer
* **.**********.**********  * .*

7. spacer 1.23|1419956|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.758

ccacatggacgaccttgccgccgccgtagacgg	CRISPR spacer
cgacatggacgacactgccgccgccggaccgcg	Protospacer
* *********** .*********** *    *

8. spacer 1.23|1419956|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012918 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p4, complete sequence) position: , mismatch: 8, identity: 0.758

ccacatggacgaccttgccgccgccgtagacgg	CRISPR spacer
tcacctcgacgaccttgccgccgccccggccgc	Protospacer
.*** * ****************** ..* **

9. spacer 1.24|1420022|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050184 (Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence) position: , mismatch: 8, identity: 0.765

ccttgattttttattggattctttaa--gcggtgac	CRISPR spacer
tcttgtttttttatttgattctttaactgcatta--	Protospacer
.**** ********* **********  **. *.

10. spacer 1.25|1420089|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050184 (Bacillus thuringiensis strain HER1410 plasmid pLUSID1, complete sequence) position: , mismatch: 8, identity: 0.765

ccttgattttttattggattctttaa--gcggtgac	CRISPR spacer
tcttgtttttttatttgattctttaactgcatta--	Protospacer
.**** ********* **********  **. *.

11. spacer 2.1|1910474|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to MT774393 (CrAssphage cr127_1, complete genome) position: , mismatch: 8, identity: 0.765

tttagggccttagtatattttttatatcattttt	CRISPR spacer
tataagtatataatatattttctatatcattttt	Protospacer
* **.*  . **.********.************

12. spacer 2.22|1911843|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_MK715471 (Arcobacter cryaerophilus strain M830MA plasmid pM830MA, complete sequence) position: , mismatch: 8, identity: 0.758

cgcatgaacaaaaaacttattagagttgataaa	CRISPR spacer
tgtatgagcaaaaaacttcttagagtttttagt	Protospacer
.*.****.********** ********  **.

13. spacer 1.5|1418752|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to KX957972 (Vibrio parahaemolyticus plasmid pVPS91, complete sequence) position: , mismatch: 9, identity: 0.735

tgtttctacaagttagatacattttaattatata	CRISPR spacer
catttctccaagttagataccttttaatcctgcc	Protospacer
..***** ************ *******. *..

14. spacer 1.10|1419086|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045721 (Pantoea eucalypti strain LMG 24197 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

tgtcacctacggcgcaggactgcccgccgcacaa	CRISPR spacer
aatcccagacggcgcagaactgcccgctgcactg	Protospacer
 .** *  *********.*********.**** .

15. spacer 1.10|1419086|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022517 (Pantoea vagans strain FBS135 plasmid pPant1, complete sequence) position: , mismatch: 9, identity: 0.735

tgtcacctacggcgcaggactgcccgccgcacaa	CRISPR spacer
aatcccagacggcgcagaactgcccgctgcactg	Protospacer
 .** *  *********.*********.**** .

16. spacer 1.15|1419420|35|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012698 (Microbacterium sp. No. 7 plasmid A, complete sequence) position: , mismatch: 9, identity: 0.743

cggatgccaccgggtgccgatgacgaacacccgcc	CRISPR spacer
tcgagcctcgcgggtgacgacgacgaacacccgcc	Protospacer
. **  *.  ****** ***.**************

17. spacer 1.23|1419956|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NC_023286 (Streptomyces sp. F12 plasmid pFRL6, complete sequence) position: , mismatch: 9, identity: 0.727

ccacatggacgaccttgccgccgccgtagacgg	CRISPR spacer
tggacttgacgacctcgccgccgacgtagacgt	Protospacer
. .  * ********.******* ********

18. spacer 1.23|1419956|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NC_023283 (Streptomyces sp. FR1 plasmid pFRL3, complete sequence) position: , mismatch: 9, identity: 0.727

ccacatggacgaccttgccgccgccgtagacgg	CRISPR spacer
tggacttgacgacctcgccgccgacgtagacgt	Protospacer
. .  * ********.******* ********

19. spacer 1.23|1419956|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NC_023284 (Streptomyces sp. F2 plasmid pFRL4, complete sequence) position: , mismatch: 9, identity: 0.727

ccacatggacgaccttgccgccgccgtagacgg	CRISPR spacer
tggacttgacgacctcgccgccgacgtagacgt	Protospacer
. .  * ********.******* ********

20. spacer 1.27|1420223|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.735

acaggaacgcccccccctccgggaagaaaccggc	CRISPR spacer
ccgggccggcctcccccttcgggaagaaaccgat	Protospacer
 *.**   ***.******.*************..

21. spacer 1.27|1420223|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.735

acaggaacgcccccccctccgggaagaaaccggc	CRISPR spacer
ccgggccggcctcccccttcgggaagaaaccgat	Protospacer
 *.**   ***.******.*************..

22. spacer 1.29|1420357|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214939 (Mycoplasma salivarium strain NCTC10113 plasmid 2) position: , mismatch: 9, identity: 0.727

gattgttcatgatttagtttcctttcttctttt	CRISPR spacer
aacgagacattatttagtatcctttcttcttct	Protospacer
.*. .  *** ******* ************.*

23. spacer 2.20|1911714|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to MN693925 (Marine virus AFVG_250M1114, complete genome) position: , mismatch: 9, identity: 0.735

atcttttggatttaaattgtaaatgttccatgtg	CRISPR spacer
atcattcggatttaaattgtaaattaaaccttcg	Protospacer
*** **.*****************    * * .*

24. spacer 2.21|1911779|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to CAJCJZ010000002 (Enterococcus phage vB_EfaS_140 genome assembly, contig: phage140-genome, whole genome shotgun sequence) position: , mismatch: 9, identity: 0.727

cgcaccggagaagttgaaacaatcatggaaact	CRISPR spacer
ctccatggagaagttgaaaaaatcattgaacag	Protospacer
* *  .************* ****** ***

25. spacer 2.21|1911779|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to MT119360 (Enterococcus phage nattely, complete genome) position: , mismatch: 9, identity: 0.727

cgcaccggagaagttgaaacaatcatggaaact	CRISPR spacer
ctccatggagaagttgaaaaaatcattgaacag	Protospacer
* *  .************* ****** ***

26. spacer 2.25|1912037|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to AP013817 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C15-MedDCM-OCT-S44-C148, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 9, identity: 0.735

ccctttgatgcattcaatttatcattatttttta	CRISPR spacer
tctaaaaattcattcaatttataattattttttt	Protospacer
.*.   .** ************ **********

27. spacer 2.25|1912037|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 9, identity: 0.735

ccctttgatgcattcaatttatcattatttttta	CRISPR spacer
tctacagcttcattaaatttatctttatttttta	Protospacer
.*. . * * **** ******** **********

28. spacer 2.25|1912037|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NC_031046 (Staphylococcus phage BP39, complete genome) position: , mismatch: 9, identity: 0.735

ccctttgatgcattcaatttatcattatttttta	CRISPR spacer
tattttttatcattaaatttatctttatttttta	Protospacer
. .***    **** ******** **********

29. spacer 1.23|1419956|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP013105 (Paraburkholderia caribensis strain MWAP64 plasmid 2, complete sequence) position: , mismatch: 10, identity: 0.697

ccacatggacgaccttgccgccgccgtagacgg	CRISPR spacer
tggtgaacacgacctggccgccgccgtagaagg	Protospacer
. ... . ******* ************** **

30. spacer 1.23|1419956|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NC_021229 (Arthrobacter nicotinovorans pAO1 megaplasmid sequence, strain ATCC 49919) position: , mismatch: 10, identity: 0.697

ccacatggacgaccttgccgccgccgtagacgg	CRISPR spacer
gaacatggacgagctttccgccgccggcctcat	Protospacer
  ********** *** *********    *.

31. spacer 1.23|1419956|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017422 (Arthrobacter sp. ZXY-2 plasmid pZXY21, complete sequence) position: , mismatch: 10, identity: 0.697

ccacatggacgaccttgccgccgccgtagacgg	CRISPR spacer
gaacatggacgagctttccgccgccggcctcat	Protospacer
  ********** *** *********    *.

32. spacer 1.29|1420357|33|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to KC699836 (Bacillus phage SIOphi, partial genome) position: , mismatch: 10, identity: 0.697

gattgttcatgatttagtttcctttcttctttt	CRISPR spacer
ttatgttcaagatttagtctcctttctgcgaac	Protospacer
   ****** ********.******** *   .

33. spacer 1.32|1420556|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054621 (Azospirillum oryzae strain KACC 14407 plasmid unnamed6, complete sequence) position: , mismatch: 10, identity: 0.706

tattgtttattgttccgggggttgcccccgttga	CRISPR spacer
ccttgtttattgttccgagggtagccccgaaaac	Protospacer
. ***************.**** ***** .  .

34. spacer 2.10|1911061|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NC_011308 (Listeria phage P40, complete genome) position: , mismatch: 10, identity: 0.706

tagaaagacaatagactatgaataaagacaaact	CRISPR spacer
ccttaaagtaatatactatgaatatagacaaacg	Protospacer
.   **...**** ********** ********

35. spacer 1.22|1419889|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP040462 (Enterococcus sp. M190262 plasmid pM190262, complete sequence) position: , mismatch: 11, identity: 0.676

ttttagtttagtttagtgtttattgtttcggggg	CRISPR spacer
aattagtttattttagtgattattgtgttcaatt	Protospacer
  ******** ******* ******* *. ..

36. spacer 2.10|1911061|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NC_019730 (Oscillatoria nigro-viridis PCC 7112 plasmid pOSC7112.02, complete sequence) position: , mismatch: 11, identity: 0.676

tagaaagacaatagactatgaataaagacaaact	CRISPR spacer
aggaaaaacaatagactatggataaaatgtagta	Protospacer
 .****.*************.*****.   *..

37. spacer 2.20|1911714|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032858 (Bacillus subtilis subsp. subtilis strain 2RL2-3 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

atcttttggatttaaattgtaaatgttccatgtg	CRISPR spacer
atcttttggaattaaattataaatttcttcaaaa	Protospacer
********** *******.***** *...  . .

38. spacer 2.20|1911714|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032873 (Bacillus subtilis subsp. subtilis strain 2KL1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.676

atcttttggatttaaattgtaaatgttccatgtg	CRISPR spacer
atcttttggaattaaattataaatttcttcaaaa	Protospacer
********** *******.***** *...  . .

39. spacer 2.20|1911714|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026534 (Bacillus velezensis strain DKU_NT_04 plasmid p1_DKU_NT_04, complete sequence) position: , mismatch: 11, identity: 0.676

atcttttggatttaaattgtaaatgttccatgtg	CRISPR spacer
atcttttggaattaaattataaatttcttcaaaa	Protospacer
********** *******.***** *...  . .

40. spacer 2.25|1912037|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to HQ698922 (Acinetobacter phage ZZ1, complete genome) position: , mismatch: 11, identity: 0.676

ccctttgatgcattcaatttatcattatttttta	CRISPR spacer
taacattatccattcaatttataattattttgag	Protospacer
.  . * ** ************ ********  .

41. spacer 2.25|1912037|34|CP025827|PILER-CR,CRISPRCasFinder,CRT matches to MK240351 (Acinetobacter phage Henu6, complete genome) position: , mismatch: 11, identity: 0.676

ccctttgatgcattcaatttatcattatttttta	CRISPR spacer
taacattatccattcaatttataattattttgag	Protospacer
.  . * ** ************ ********  .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025827

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection