CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP025687	Enterococcus faecium strain CBA7134 plasmid pCBA710401, complete sequence	0 crisprs	csa3	2
CP025686	Enterococcus faecium strain CBA7134 plasmid pCBA713402, complete sequence	0 crisprs	NA	0
CP025685	Enterococcus faecium strain CBA7134 chromosome, complete genome	0 crisprs	DEDDh,cas3,csa3,DinG,cas14j	4

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

948087 : 1030775

102

Enterococcus_phage(51.22%)

head,holin,protease,capsid,terminase,tail,portal,integrase,tRNA,transposase

attL 970884:970901|attR 1033142:1033159

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA19373.1\|948087_948840_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
QAA19374.1\|948983_949331_+	50S ribosomal protein L19	NA	NA	NA	NA
QAA19375.1\|949587_949881_+	DUF2087 domain-containing protein	NA	NA	NA	NA
QAA19376.1\|949968_950625_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QAA19377.1\|950973_952608_+	LPXTG-protein cell wall anchor protein	NA	NA	NA	NA
QAA20926.1\|953034_953295_+	peptidase	NA	NA	NA	NA
QAA19378.1\|953291_953492_+	cell wall anchor protein	NA	NA	NA	NA
QAA20927.1\|953780_954794_+	isopeptide-forming domain-containing fimbrial protein	NA	NA	NA	NA
QAA20928.1\|955405_956221_+	peptidase	NA	NA	NA	NA
QAA19379.1\|956674_957847_+	class C sortase	NA	NA	NA	NA
QAA19380.1\|957843_958041_+	hypothetical protein	NA	NA	NA	NA
QAA20929.1\|958008_958503_-	hypothetical protein	NA	NA	NA	NA
QAA19381.1\|959091_959514_+	HTH domain-containing protein	NA	NA	NA	NA
QAA19382.1\|959679_960873_-	MFS transporter	NA	NA	NA	NA
QAA19383.1\|961069_961441_+	hypothetical protein	NA	NA	NA	NA
QAA19384.1\|961503_962583_+	glucuronyl hydrolase	NA	NA	NA	NA
QAA19385.1\|962611_963871_+	sn-glycerol-3-phosphate ABC transporter substrate-binding protein UgpB	NA	NA	NA	NA
QAA19386.1\|963923_964820_+	sugar ABC transporter permease	NA	NA	NA	NA
QAA19387.1\|964830_965730_+	carbohydrate ABC transporter permease	NA	NA	NA	NA
QAA19388.1\|965710_966373_+	DUF624 domain-containing protein	NA	NA	NA	NA
QAA19389.1\|966578_968243_+	acetolactate synthase AlsS	NA	NA	NA	NA
QAA19390.1\|968255_968966_+	acetolactate decarboxylase	NA	NA	NA	NA
QAA19391.1\|969094_969592_+	GAF domain-containing protein	NA	NA	NA	NA
QAA19392.1\|969777_970038_+	hypothetical protein	NA	NA	NA	NA
QAA19393.1\|970449_970986_-	VanZ family protein	NA	NA	NA	NA
970884:970901	attL	NA	NA	NA	NA
QAA19394.1\|971261_971501_-	hypothetical protein	NA	NA	NA	NA
QAA19395.1\|971947_973090_-\|integrase	site-specific integrase	A0A097PAS9	Streptococcus_pyogenes_phage	1.4e-69	43.0
QAA19396.1\|973215_974988_-	hypothetical protein	NA	NA	NA	NA
QAA19397.1\|975123_975546_-	toxin	NA	NA	NA	NA
QAA19398.1\|975563_975884_-	transcriptional regulator	A0A0M4QX29	Bacillus_phage	5.9e-13	49.4
QAA19399.1\|976570_976762_+	hypothetical protein	NA	NA	NA	NA
QAA19400.1\|976758_976998_-	DUF1883 domain-containing protein	NA	NA	NA	NA
QAA19401.1\|977134_977338_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
QAA19402.1\|977352_977580_+	DNA-binding protein	NA	NA	NA	NA
QAA19403.1\|978065_978764_+	phage regulatory protein	D2IYT0	Enterococcus_phage	7.8e-26	35.1
QAA19404.1\|978750_978981_+	hypothetical protein	NA	NA	NA	NA
QAA19405.1\|978940_979282_+	hypothetical protein	NA	NA	NA	NA
QAA19406.1\|979274_979946_+	DUF1071 domain-containing protein	A0A1B1P7F0	Bacillus_phage	4.2e-29	47.4
QAA19407.1\|979951_980638_+	hypothetical protein	C9E2N1	Enterococcus_phage	4.9e-89	70.0
QAA19408.1\|980640_981471_+	replication protein	C9E2N2	Enterococcus_phage	5.2e-53	44.2
QAA19409.1\|981487_982339_+	chromosomal replication initiator protein DnaA	A0A0P0I3L9	Lactobacillus_phage	4.7e-25	28.7
QAA19410.1\|982335_982695_+	thiamine phosphate synthase	A0A1P8BKR1	Lactococcus_phage	1.1e-18	48.3
QAA19411.1\|982709_982871_+	antitoxin	NA	NA	NA	NA
QAA19412.1\|982867_983173_+	hypothetical protein	NA	NA	NA	NA
QAA19413.1\|983172_983487_+	hypothetical protein	A0A2H4JAZ4	uncultured_Caudovirales_phage	7.8e-10	36.4
QAA19414.1\|983663_983975_+	hypothetical protein	D2IZY1	Enterococcus_phage	3.1e-35	73.7
QAA19415.1\|983975_984194_+	hypothetical protein	NA	NA	NA	NA
QAA19416.1\|984193_984490_+	hypothetical protein	NA	NA	NA	NA
QAA19417.1\|984566_984983_+	autolysin	C9E2P5	Enterococcus_phage	1.8e-46	67.4
QAA20930.1\|985242_985581_+	hypothetical protein	NA	NA	NA	NA
QAA19418.1\|985561_985885_-	hypothetical protein	NA	NA	NA	NA
QAA19419.1\|986217_986430_+	hypothetical protein	D2IZF7	Enterococcus_phage	3.8e-08	59.6
QAA19420.1\|986436_986664_+	hypothetical protein	NA	NA	NA	NA
QAA19421.1\|986663_987212_+	hypothetical protein	NA	NA	NA	NA
QAA19422.1\|987213_987588_+	HNH endonuclease	A0A249XUN4	Enterococcus_phage	3.9e-32	54.4
QAA19423.1\|987753_988233_+\|terminase	phage terminase small subunit P27 family	V5UQR4	Enterococcus_phage	1.5e-41	55.0
QAA19424.1\|988225_989950_+\|terminase	terminase large subunit	A0A0M5M1F1	Enterococcus_phage	6.0e-168	51.3
QAA19425.1\|990123_991308_+\|portal	phage portal protein	D7PQ41	Enterococcus_phage	8.7e-78	43.1
QAA20931.1\|991255_991801_+\|head,protease	HK97 family phage prohead protease	A0A0M4R4P2	Enterococcus_phage	1.1e-54	59.2
QAA19426.1\|991841_993038_+\|capsid	phage major capsid protein	A0A0S2SXJ6	Bacillus_phage	2.2e-81	55.6
QAA19427.1\|993082_993292_+	hypothetical protein	A5GYM0	Lactococcus_phage	8.6e-13	62.7
QAA19428.1\|993303_993624_+	DNA packaging protein	A0A0M4S687	Enterococcus_phage	1.3e-15	47.9
QAA19429.1\|993565_993901_+\|head,tail	head-tail adaptor protein	C0LZZ3	Enterococcus_phage	1.7e-15	37.8
QAA19430.1\|993897_994293_+	hypothetical protein	A0A0M5M1E5	Enterococcus_phage	1.9e-16	39.8
QAA19431.1\|994289_994661_+	hypothetical protein	A0A060ANH4	Enterococcus_phage	2.5e-23	46.2
QAA19432.1\|994676_995237_+\|tail	phage tail protein	A0A0S2MY53	Enterococcus_phage	2.6e-40	45.9
QAA19433.1\|995346_995658_+	hypothetical protein	A0A0S2MY76	Enterococcus_phage	4.0e-14	44.8
QAA19434.1\|995681_995873_+	hypothetical protein	NA	NA	NA	NA
QAA19435.1\|995872_1000258_+	tape measure protein	A0A0M5M3L4	Enterococcus_phage	1.1e-229	46.4
QAA19436.1\|1000268_1001099_+\|tail	phage tail family protein	A8ASK7	Listeria_phage	5.8e-52	41.2
QAA19437.1\|1001107_1002127_+	hypothetical protein	Q9T1A5	Listeria_phage	2.6e-107	55.6
QAA19438.1\|1002126_1003500_+	hypothetical protein	A0A059T661	Listeria_phage	4.1e-18	34.0
QAA19439.1\|1003515_1005678_+	hypothetical protein	A0A060AI60	Enterococcus_phage	2.3e-60	39.8
QAA19440.1\|1005689_1006136_+	hypothetical protein	NA	NA	NA	NA
QAA19441.1\|1006137_1006275_+	XkdX family protein	NA	NA	NA	NA
QAA19442.1\|1006311_1006605_+	hypothetical protein	NA	NA	NA	NA
QAA19443.1\|1006627_1006828_+\|holin	holin	A0A0S2MYF6	Enterococcus_phage	1.3e-21	77.3
QAA19444.1\|1006837_1007857_+	N-acetylmuramoyl-L-alanine amidase	A0A1G5SA77	Enterococcus_phage	1.2e-59	65.5
QAA19445.1\|1008621_1008924_-	hypothetical protein	NA	NA	NA	NA
QAA19446.1\|1009680_1010454_-	Cof-type HAD-IIB family hydrolase	NA	NA	NA	NA
QAA19447.1\|1010597_1010948_+	hypothetical protein	NA	NA	NA	NA
QAA19448.1\|1010928_1011645_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	6.1e-34	36.2
QAA19449.1\|1011644_1013093_+	sensor histidine kinase	A0A1V0SGX0	Hokovirus	1.0e-19	29.3
QAA19450.1\|1013165_1013675_-	molybdenum ABC transporter ATP-binding protein ModC	NA	NA	NA	NA
QAA19451.1\|1013664_1014390_-	hypothetical protein	NA	NA	NA	NA
QAA19452.1\|1014561_1016682_-	LTA synthase family protein	W6LM83	Streptococcus_phage	5.7e-221	58.4
QAA19453.1\|1016910_1018089_+	class I SAM-dependent rRNA methyltransferase	W6LLI2	Streptococcus_phage	2.1e-103	49.7
QAA19454.1\|1018104_1018863_+	type I 3-dehydroquinate dehydratase	W6LP76	Streptococcus_phage	2.5e-25	35.6
QAA19455.1\|1018885_1019371_+\|tRNA	Cys-tRNA(Pro) deacylase	NA	NA	NA	NA
QAA19456.1\|1019441_1020695_-\|tRNA	tRNA uridine-5-carboxymethylaminomethyl(34) synthesis enzyme MnmG	A0A2H4PQX1	Staphylococcus_phage	4.5e-24	55.3
QAA19457.1\|1020811_1022161_+	NADP-specific glutamate dehydrogenase	NA	NA	NA	NA
QAA19458.1\|1022272_1023619_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
QAA19459.1\|1025100_1025769_-	hypothetical protein	Q9AZW5	Lactococcus_phage	2.0e-39	50.3
QAA19460.1\|1025833_1026262_-	ImmA/IrrE family metallo-endopeptidase	NA	NA	NA	NA
QAA19461.1\|1026268_1026649_-	XRE family transcriptional regulator	O03970	Lactobacillus_phage	2.8e-17	34.9
QAA19462.1\|1026812_1027064_+	XRE family transcriptional regulator	NA	NA	NA	NA
QAA19463.1\|1027277_1027832_+	hypothetical protein	NA	NA	NA	NA
QAA19464.1\|1027828_1028059_+	DNA-binding protein	NA	NA	NA	NA
QAA19465.1\|1028075_1028261_+	hypothetical protein	NA	NA	NA	NA
QAA19466.1\|1028394_1029556_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	2.0e-79	51.3
QAA19467.1\|1029872_1030286_+	DUF4231 domain-containing protein	NA	NA	NA	NA
QAA19468.1\|1030517_1030775_-\|tRNA	histidine--tRNA ligase	NA	NA	NA	NA
1033142:1033159	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1224914 : 1284488

Lactobacillus_phage(25.81%)

holin,capsid,terminase,tail,integrase,tRNA,transposase

attL 1227906:1227921|attR 1280962:1280977

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA19644.1\|1224914_1225616_+\|tRNA	tRNA (adenine(22)-N(1))-methyltransferase TrmK	NA	NA	NA	NA
QAA19645.1\|1225612_1226734_+	Nif3-like dinuclear metal center hexameric protein	NA	NA	NA	NA
QAA19646.1\|1226747_1227980_+	peptidase T	NA	NA	NA	NA
1227906:1227921	attL	NA	NA	NA	NA
QAA19647.1\|1228110_1229019_+	diacylglycerol kinase	NA	NA	NA	NA
QAA19648.1\|1229053_1229326_+	DUF1294 domain-containing protein	NA	NA	NA	NA
QAA19649.1\|1229336_1230383_+	UPF0104 family protein	NA	NA	NA	NA
QAA19650.1\|1230632_1233242_+	ATP-dependent chaperone ClpB	A0A2I7SAX5	Vibrio_phage	1.6e-132	35.0
QAA19651.1\|1233390_1234062_-	hypothetical protein	NA	NA	NA	NA
QAA19652.1\|1234054_1234549_-	photosystem II biogenesis protein Psp29	A0A1W6JK28	Lactococcus_phage	1.4e-42	56.5
QAA19653.1\|1234568_1235789_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
QAA19654.1\|1235935_1237771_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	5.8e-20	24.4
QAA19655.1\|1237863_1239000_-\|integrase	site-specific integrase	A0A2I7SCV1	Paenibacillus_phage	6.6e-115	55.1
QAA19656.1\|1239164_1239782_-	DUF4352 domain-containing protein	A0A0P0IXE0	Lactobacillus_phage	4.6e-38	67.5
QAA20938.1\|1239904_1240333_-	toxin	NA	NA	NA	NA
QAA19657.1\|1240339_1240711_-	XRE family transcriptional regulator	O03970	Lactobacillus_phage	2.1e-22	45.2
QAA19658.1\|1240865_1241099_+	XRE family transcriptional regulator	NA	NA	NA	NA
QAA19659.1\|1241095_1241365_+	hypothetical protein	NA	NA	NA	NA
QAA19660.1\|1241372_1241594_-	hypothetical protein	NA	NA	NA	NA
QAA19661.1\|1241847_1242393_+	hypothetical protein	NA	NA	NA	NA
QAA20939.1\|1242398_1242677_+	DNA-binding protein	NA	NA	NA	NA
QAA19662.1\|1242673_1242859_+	hypothetical protein	NA	NA	NA	NA
QAA19663.1\|1242995_1243937_+	endonuclease	D2IZK1	Enterococcus_phage	1.2e-141	76.4
QAA19664.1\|1244030_1244921_+	recombinase RecT	D2IYT9	Enterococcus_phage	2.4e-136	84.1
QAA19665.1\|1244969_1245860_+	DNA replication protein DnaD	NA	NA	NA	NA
QAA19666.1\|1245852_1246212_+	hypothetical protein	A0A1P8BKR1	Lactococcus_phage	6.8e-18	46.6
QAA19667.1\|1246226_1246388_+	antitoxin	NA	NA	NA	NA
QAA19668.1\|1246384_1246690_+	hypothetical protein	NA	NA	NA	NA
QAA19669.1\|1246689_1247007_+	DUF1140 domain-containing protein	A0A2H4JAZ4	uncultured_Caudovirales_phage	3.0e-09	35.4
QAA19670.1\|1247173_1247524_+	hypothetical protein	NA	NA	NA	NA
QAA19671.1\|1247520_1247727_+	hypothetical protein	NA	NA	NA	NA
QAA19672.1\|1247723_1248161_+	hypothetical protein	Q8W5X2	Listeria_phage	3.3e-22	45.7
QAA19673.1\|1248161_1248380_+	hypothetical protein	NA	NA	NA	NA
QAA19674.1\|1248379_1248667_+	hypothetical protein	NA	NA	NA	NA
QAA19675.1\|1248699_1248951_-	hypothetical protein	NA	NA	NA	NA
QAA19676.1\|1249258_1249726_+	ArpU family transcriptional regulator	NA	NA	NA	NA
QAA19677.1\|1250611_1250836_+	hypothetical protein	NA	NA	NA	NA
QAA19678.1\|1250878_1251589_+	hypothetical protein	A0A2P1JTW4	Anoxybacillus_phage	2.2e-44	46.6
QAA19679.1\|1251554_1252880_+\|terminase	PBSX family phage terminase large subunit	A4L7R3	Lactococcus_phage	3.1e-156	58.8
QAA19680.1\|1252873_1254427_+\|capsid	capsid protein	O03928	Lactobacillus_phage	6.0e-151	54.7
QAA19681.1\|1254429_1255566_+\|capsid	capsid protein	O03929	Lactobacillus_phage	2.5e-90	53.8
QAA19682.1\|1255675_1256251_+\|capsid	capsid protein	Q9T1B8	Listeria_phage	1.2e-27	47.1
QAA19683.1\|1256268_1257141_+	hypothetical protein	Q6SED2	Lactobacillus_prophage	1.6e-105	64.8
QAA19684.1\|1257158_1257404_+	hypothetical protein	A5GYM0	Lactococcus_phage	2.2e-12	55.1
QAA19685.1\|1257441_1257837_+	hypothetical protein	NA	NA	NA	NA
QAA19686.1\|1257833_1258181_+\|capsid	capsid protein	O03932	Lactobacillus_phage	3.6e-32	56.2
QAA19687.1\|1258180_1258516_+\|capsid	capsid protein	U3PIU9	Lactobacillus_phage	8.9e-20	58.5
QAA19688.1\|1258515_1258908_+\|capsid	capsid protein	Q5YA65	Bacillus_phage	1.1e-29	47.3
QAA19689.1\|1258920_1259388_+\|capsid	capsid protein	O03972	Lactobacillus_phage	1.0e-45	64.1
QAA19690.1\|1259387_1259645_+	hypothetical protein	A0A1D6Z291	Staphylococcus_phage	1.7e-15	62.5
QAA19691.1\|1259714_1260149_+	hypothetical protein	NA	NA	NA	NA
QAA19692.1\|1260153_1260774_+	hypothetical protein	O03936	Lactobacillus_phage	6.7e-37	43.3
QAA19693.1\|1260786_1265277_+\|tail	phage tail tape measure protein	A0A0M5M3L4	Enterococcus_phage	2.1e-108	32.1
QAA19694.1\|1265266_1266094_+\|tail	phage tail family protein	Q9T1A6	Listeria_phage	1.3e-51	42.4
QAA19695.1\|1266102_1267122_+	hypothetical protein	Q9T1A5	Listeria_phage	5.7e-102	54.7
QAA19696.1\|1267122_1268496_+	hypothetical protein	A0A059T661	Listeria_phage	9.0e-18	35.4
QAA19697.1\|1268511_1270671_+	hypothetical protein	A0A096XSZ6	Enterococcus_phage	4.1e-81	48.7
QAA19698.1\|1270682_1271129_+	hypothetical protein	NA	NA	NA	NA
QAA19699.1\|1271130_1271268_+	XkdX family protein	NA	NA	NA	NA
QAA19700.1\|1271305_1271599_+	hypothetical protein	NA	NA	NA	NA
QAA19701.1\|1271595_1271820_+\|holin	holin	NA	NA	NA	NA
QAA19702.1\|1271816_1272833_+	N-acetylmuramoyl-L-alanine amidase	A0A1G5SA77	Enterococcus_phage	4.9e-61	66.1
QAA19703.1\|1272924_1273497_+	hypothetical protein	NA	NA	NA	NA
QAA19704.1\|1274641_1274908_-	hypothetical protein	NA	NA	NA	NA
QAA19705.1\|1274951_1275143_+	hypothetical protein	NA	NA	NA	NA
QAA19706.1\|1276104_1277064_-\|transposase	IS30-like element IS6770 family transposase	NA	NA	NA	NA
QAA19707.1\|1277324_1277606_+	hypothetical protein	NA	NA	NA	NA
QAA19708.1\|1277786_1278089_-	hypothetical protein	NA	NA	NA	NA
QAA19709.1\|1278419_1278674_-	hypothetical protein	NA	NA	NA	NA
QAA19710.1\|1279196_1279394_+	cold-shock protein	Q9AZD3	Lactococcus_phage	2.3e-23	78.5
QAA19711.1\|1279681_1280035_+	ArsR family transcriptional regulator	NA	NA	NA	NA
QAA19712.1\|1280012_1280690_+	protein deglycase HchA	NA	NA	NA	NA
QAA19713.1\|1280690_1281614_+	malate dehydrogenase	NA	NA	NA	NA
1280962:1280977	attR	NA	NA	NA	NA
QAA19714.1\|1281694_1282087_-	VOC family protein	NA	NA	NA	NA
QAA19715.1\|1283297_1284488_-\|transposase	IS256 family transposase	NA	NA	NA	NA

DBSCAN-SWA_3

1591786 : 1600847

Synechococcus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA19990.1\|1591786_1592365_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.3e-26	37.4
QAA20950.1\|1592361_1593405_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SE90	Cyanophage	2.3e-61	43.9
QAA19991.1\|1593436_1594876_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.4e-52	33.1
QAA19992.1\|1594860_1597083_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	3.8e-151	41.4
QAA19993.1\|1597083_1597755_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
QAA19994.1\|1597756_1598011_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
QAA19995.1\|1598010_1598739_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	E3SPA9	Prochlorococcus_phage	5.1e-44	42.2
QAA19996.1\|1598994_1599372_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
QAA19997.1\|1599551_1600847_-	adenylosuccinate lyase	A0A1B3B081	Gordonia_phage	1.0e-18	33.1

DBSCAN-SWA_4

1996419 : 2005381

Streptococcus_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA20356.1\|1996419_1998609_+	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	1.2e-285	66.6
QAA20357.1\|1999413_2000016_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A288TZV3	Enterococcus_phage	4.9e-53	58.0
QAA20358.1\|2000069_2001191_-	DNA polymerase IV	NA	NA	NA	NA
QAA20359.1\|2001299_2002172_-	16S rRNA (cytidine(1402)-2'-O)-methyltransferase	M1PLC5	Streptococcus_phage	2.1e-89	60.1
QAA20360.1\|2002240_2002588_-	DUF972 domain-containing protein	M1PFV3	Streptococcus_phage	5.1e-18	41.1
QAA20361.1\|2002580_2003405_-	signal peptidase	NA	NA	NA	NA
QAA20362.1\|2003440_2004379_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	6.1e-34	33.8
QAA20363.1\|2004392_2004722_-	hypothetical protein	NA	NA	NA	NA
QAA20364.1\|2004736_2005381_-	dTMP kinase	M1PSC7	Streptococcus_phage	4.2e-58	52.6

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP025687

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

11865 : 62848

Paenibacillus_phage(12.5%)

transposase,protease

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA21000.1\|11865_13027_+\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	3.5e-79	50.9
QAA21001.1\|13316_14999_-	PTS lactose transporter subunit IIBC	NA	NA	NA	NA
QAA21002.1\|14982_15333_-	PTS lactose transporter subunit IIA	NA	NA	NA	NA
QAA21003.1\|15355_16762_-	6-phospho-beta-galactosidase	A0A0B5JD41	Pandoravirus	3.4e-44	30.2
QAA21004.1\|17228_18236_+	LacI family transcriptional regulator	NA	NA	NA	NA
QAA21005.1\|18629_19256_-	2-dehydro-3-deoxyphosphogluconate aldolase	NA	NA	NA	NA
QAA21006.1\|20263_21385_-	galactonate dehydratase	Q6A202	Oenococcus_phage	7.3e-58	34.9
QAA21007.1\|21409_22543_-	ATP-binding protein	NA	NA	NA	NA
QAA21008.1\|22533_23202_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.8e-27	32.4
QAA21009.1\|23657_24644_-	tagatose-bisphosphate aldolase	NA	NA	NA	NA
QAA21010.1\|24656_25583_-	tagatose-6-phosphate kinase	NA	NA	NA	NA
QAA21011.1\|25595_26111_-	galactose-6-phosphate isomerase subunit LacB	A0A222YX14	Synechococcus_phage	9.5e-05	29.0
QAA21012.1\|26129_26558_-	galactose-6-phosphate isomerase subunit LacA	NA	NA	NA	NA
QAA21013.1\|26577_27351_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.3e-18	28.1
QAA21014.1\|27515_27995_+	PTS sugar transporter subunit IIA	NA	NA	NA	NA
QAA21015.1\|28051_28354_+	PTS fructose transporter subunit IIB	NA	NA	NA	NA
QAA21016.1\|28375_29833_+	PTS glucitol transporter subunit IIA	NA	NA	NA	NA
QAA21017.1\|30425_31178_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-17	30.9
QAA21018.1\|32194_33364_-\|transposase	IS256 family transposase	NA	NA	NA	NA
QAA21019.1\|33525_34614_+	hypothetical protein	NA	NA	NA	NA
QAA21020.1\|34754_36401_-\|transposase	IS5/IS1182 family transposase	A0ZS58	Staphylococcus_virus	2.1e-146	49.9
QAA21021.1\|36682_39061_-	hypothetical protein	NA	NA	NA	NA
QAA21022.1\|39112_39472_-	hypothetical protein	NA	NA	NA	NA
QAA21023.1\|40115_41075_+\|transposase	IS30-like element IS6770 family transposase	W5R8L2	Staphylococcus_phage	2.3e-36	36.1
QAA21024.1\|41862_42090_-	hypothetical protein	NA	NA	NA	NA
QAA21025.1\|42206_42311_-	resolvase	NA	NA	NA	NA
QAA21026.1\|42385_43150_-	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
QAA21027.1\|43146_43800_-	ABC transporter	G9BWD6	Planktothrix_phage	5.8e-23	36.0
QAA21028.1\|43883_44306_-	cupin domain-containing protein	Q2I8C5	Bacillus_phage	2.4e-38	58.5
QAA21029.1\|44375_44585_+	hypothetical protein	NA	NA	NA	NA
QAA21030.1\|45030_45219_-	hypothetical protein	NA	NA	NA	NA
QAA21031.1\|46568_46763_-	hypothetical protein	NA	NA	NA	NA
QAA21032.1\|46806_48156_-	replication protein RepR	NA	NA	NA	NA
QAA21033.1\|48671_48863_-	hypothetical protein	NA	NA	NA	NA
QAA21034.1\|49081_49318_-	hypothetical protein	NA	NA	NA	NA
QAA21035.1\|49885_52000_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	1.8e-118	39.0
QAA21036.1\|52634_53258_+	resolvase	M9Q1K0	Clostridium_phage	1.0e-16	33.0
QAA21037.1\|53254_54685_-	hypothetical protein	NA	NA	NA	NA
QAA21038.1\|54846_56031_-\|transposase	IS256 family transposase	A0A220NQR7	Corynebacterium_phage	2.4e-27	24.2
QAA21039.1\|56115_56334_-	hypothetical protein	NA	NA	NA	NA
QAA21040.1\|57484_57787_+	hypothetical protein	F0PIG8	Enterococcus_phage	1.6e-07	54.2
QAA21041.1\|58082_58778_+	hypothetical protein	NA	NA	NA	NA
QAA21042.1\|58814_59312_-	N-acetyltransferase	NA	NA	NA	NA
QAA21043.1\|59367_60276_-\|transposase	IS982 family transposase	NA	NA	NA	NA
QAA21044.1\|60435_60747_-	hypothetical protein	NA	NA	NA	NA
QAA21045.1\|60736_60919_-	enterocin	NA	NA	NA	NA
QAA21046.1\|61260_61494_-	DUF2786 domain-containing protein	NA	NA	NA	NA
QAA21047.1\|61685_62848_-\|transposase	IS3 family transposase	A0A2I7SC85	Paenibacillus_phage	1.2e-79	51.3

DBSCAN-SWA_2

104077 : 141296

Staphylococcus_phage(28.57%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA21091.1\|104077_105268_+\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	9.5e-24	28.4
QAA21092.1\|105837_106032_+	hypothetical protein	NA	NA	NA	NA
QAA21093.1\|106775_107030_+	AbrB family transcriptional regulator	NA	NA	NA	NA
QAA21094.1\|107030_107348_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
QAA21095.1\|107811_108498_+\|transposase	IS6-like element IS1216 family transposase	A0A1X9I6C6	Streptococcus_phage	5.0e-126	98.7
QAA21096.1\|109140_109686_-	cobalamin ECF transporter	NA	NA	NA	NA
QAA21097.1\|109835_112319_+	ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent	A0A0K2CP92	Brevibacillus_phage	2.9e-184	45.4
QAA21098.1\|112332_112896_+	ATP:cob(I)alamin adenosyltransferase	NA	NA	NA	NA
QAA21099.1\|112911_113316_+	DUF4430 domain-containing protein	NA	NA	NA	NA
QAA21100.1\|113517_114192_+\|transposase	IS6 family transposase	A0A1X9I6C6	Streptococcus_phage	5.9e-87	67.0
QAA21101.1\|114727_115618_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	6.7e-22	36.1
QAA21102.1\|115614_116007_+	OsmC family peroxiredoxin	NA	NA	NA	NA
QAA21103.1\|118355_119006_+	glutamate racemase	NA	NA	NA	NA
QAA21104.1\|119050_119350_-	hypothetical protein	NA	NA	NA	NA
QAA21105.1\|119450_119882_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
QAA21106.1\|120406_121114_+	HAD family hydrolase	NA	NA	NA	NA
QAA21107.1\|121186_121546_-	iron-sulfur cluster biosynthesis family protein	NA	NA	NA	NA
QAA21108.1\|122204_123230_+	saccharopine dehydrogenase	NA	NA	NA	NA
QAA21109.1\|124679_125546_-	LysR family transcriptional regulator	NA	NA	NA	NA
QAA21110.1\|126153_127344_-\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	2.1e-23	27.1
QAA21111.1\|127646_127832_+	hypothetical protein	NA	NA	NA	NA
QAA21112.1\|128721_128994_+	Txe/YoeB family addiction module toxin	NA	NA	NA	NA
QAA21113.1\|129070_129400_+	AbrB family transcriptional regulator	NA	NA	NA	NA
QAA21114.1\|129389_129677_+	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
QAA21115.1\|129962_130820_+	ParA family protein	F0PIG8	Enterococcus_phage	8.1e-33	30.7
QAA21116.1\|130820_131369_+	hypothetical protein	NA	NA	NA	NA
QAA21117.1\|131628_131925_+	hypothetical protein	NA	NA	NA	NA
QAA21118.1\|131955_132204_-	XRE family transcriptional regulator	A0A0C5K955	Enterococcus_phage	7.2e-35	98.8
QAA21119.1\|132265_132502_-	hypothetical protein	A0A0C5K6W6	Enterococcus_phage	1.3e-33	93.6
QAA21120.1\|132710_133100_-	hypothetical protein	A0A288TYE5	Enterococcus_phage	2.1e-57	88.0
QAA21121.1\|134158_135349_+\|transposase	IS256 family transposase	A0A0N9STL0	Staphylococcus_phage	3.5e-26	28.2
QAA21122.1\|135884_136457_+	DNA starvation/stationary phase protection protein	A0A0A7RTZ1	Clostridium_phage	3.9e-23	42.6
QAA21123.1\|136601_137306_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
QAA21124.1\|137332_137623_+	prolipoprotein diacylglyceryl transferase	NA	NA	NA	NA
QAA21125.1\|137769_138003_+	copper chaperone	NA	NA	NA	NA
QAA21126.1\|138200_140105_+	copper-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.4e-98	35.4
QAA21127.1\|140336_141296_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	4.5e-32	36.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025685

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP025687

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection