CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP025746	Clostridium sp. CT4 chromosome, complete genome	7 crisprs	WYL,csx1,cas14j,DEDDh,cas3,csa3,RT,PD-DExK,DinG,cas2,cas1,cas4,cas5,cas7b,cas8b1,cas6,c2c9_V-U4	1	26	8	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025746_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025746_1

1304905-1305057

Orphan

Consensus_repeat	Method
TAAAGATGTAGCACTTCAATCTGAAGTCAATTTTCAAATCTCCTCTGGGTTCTGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025746_1

>merge|CP025746|1|1304905-1305057|CRISPRCasFinder
TAAAGATGTAGCACTTCAATCTGAAGTCAATTTTCAAATCTCCTCTGGGTTCTGAGAGGAAATTTGAAAATATAAGTTTTATTATGAAGTGATACATCTAAAGATGTAGCACTTCAATCCGAAGTCAATTTTCAAATCTCCTCTGGGTTCTGA

>CP025746|1|1|1304905-1305057|CRISPRCasFinder
TAAAGATGTAGCACTTCAATCTGAAGTCAATTTTCAAATCTCCTCTGGGTTCTGA	GAGGAAATTTGAAAATATAAGTTTTATTATGAAGTGATACATC
TAAAGATGTAGCACTTCAATCCGAAGTCAATTTTCAAATCTCCTCTGGGTTCTGA

Protein	Signature genes	Signature genes Name	Protein_function
CP025746.1\|QAA31208.1\|1312171_1313152_+\|AIR-synthase	unknown	unknown	gnl\|CDD\|100037
CP025746.1\|QAA31200.1\|1300043_1300799_+\|lytic-transglycosylase	unknown	unknown	gnl\|CDD\|381594
CP025746.1\|QAA35233.1\|1317379_1318243_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP025746.1\|QAA31205.1\|1308347_1308722_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA31204.1\|1307401_1307674_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA31209.1\|1313166_1313913_+\|ribonuclease-PH	unknown	unknown	gnl\|CDD\|178914
CP025746.1\|QAA31195.1\|1292402_1292609_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA31199.1\|1297479_1299483_+\|triple-tyrosine-motif-containing-protein	unknown	unknown	gnl\|CDD\|237602
CP025746.1\|QAA31206.1\|1308782_1310408_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173869
CP025746.1\|QAA31196.1\|1292692_1294042_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
CP025746.1\|QAA31210.1\|1313914_1314526_+\|non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|234648
CP025746.1\|QAA31201.1\|1300896_1301613_+\|16S-rRNA-pseudouridine(516)-synthase	unknown	unknown	gnl\|CDD\|211327
CP025746.1\|QAA31198.1\|1296973_1297165_-\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA31211.1\|1314545_1315019_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|223695
CP025746.1\|QAA31193.1\|1290257_1291238_+\|dipeptide/oligopeptide/nickel-ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223521
CP025746.1\|QAA31197.1\|1294485_1294935_+\|YaiI/YqxD-family-protein	unknown	unknown	gnl\|CDD\|178882
CP025746.1\|QAA35232.1\|1295555_1296785_+\|group-II-intron-reverse-transcriptase/maturase	RT	pfam00078_RT_CAS-I:CAS-III	gnl\|CDD\|275209
CP025746.1\|QAA31194.1\|1291239_1292211_+\|peptide-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|226967
CP025746.1\|QAA31203.1\|1305405_1307400_+\|DNA-ligase-(NAD(+))-LigA	unknown	unknown	gnl\|CDD\|236137
CP025746.1\|QAA31207.1\|1310570_1312043_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP025746.1\|QAA31208.1\|1312171_1313152_+\|AIR-synthase	gnl\|CDD\|100037	cd06061, PurM-like1, AIR synthase (PurM) related protein, subgroup 1 of unknown function. The family of PurM related proteins includes Hydrogen expression/formation protein HypE, AIR synthases, FGAM synthase and Selenophosphate synthetase (SelD). They all contain two conserved domains and seem to dimerize. The N-terminal domain forms the dimer interface and is a putative ATP binding domain.	1.64483e-133
CP025746.1\|QAA31200.1\|1300043_1300799_+\|lytic-transglycosylase	gnl\|CDD\|381594	cd00254, LT-like, lytic transglycosylase(LT)-like domain. Members include the soluble and insoluble membrane-bound LTs in bacteria and LTs in bacteriophage lambda. LTs catalyze the cleavage of the beta-1,4-glycosidic bond between N-acetylmuramic acid (MurNAc) and N-acetyl-D-glucosamine (GlcNAc), as do "goose-type" lysozymes. However, in addition to this, they also make a new glycosidic bond with the C6 hydroxyl group of the same muramic acid residue.	1.58536e-40
CP025746.1\|QAA35233.1\|1317379_1318243_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.88115e-42
CP025746.1\|QAA31209.1\|1313166_1313913_+\|ribonuclease-PH	gnl\|CDD\|178914	PRK00173, rph, ribonuclease PH; Reviewed.	4.51954e-168
CP025746.1\|QAA31199.1\|1297479_1299483_+\|triple-tyrosine-motif-containing-protein	gnl\|CDD\|237602	PRK14081, PRK14081, triple tyrosine motif-containing protein; Provisional.	0
CP025746.1\|QAA31206.1\|1308782_1310408_+\|hypothetical-protein	gnl\|CDD\|173869	cd08504, PBP2_OppA, The substrate-binding component of an ABC-type oligopetide import system contains the type 2 periplasmic binding fold. This family represents the periplasmic substrate-binding component of an ATP-binding cassette (ABC)-type oligopeptide transport system comprised of 5 subunits. The transport system OppABCDEF contains two homologous integral membrane proteins OppB and OppF that form the translocation pore; two homologous nucleotide-binding domains OppD and OppF that drive the transport process through binding and hydrolysis of ATP; and the substrate-binding protein or receptor OppA that determines the substrate specificity of the transport system. The dipeptide (DppA) and oligopeptide (OppA) binding proteins differ in several ways. The DppA binds dipeptides and some tripeptides and is involved in chemotaxis toward dipeptides, whereas the OppA binds peptides of a wide range of lengths (2-35 amino acid residues) and plays a role in recycling of cell wall peptides, which precludes any involvement in chemotaxis. Most of other periplasmic binding proteins are comprised of only two globular subdomains corresponding to domains I and III of the dipeptide/oligopeptide binding proteins. The structural topology of these domains is most similar to that of the type 2 periplasmic binding proteins (PBP2), which are responsible for the uptake of a variety of substrates such as phosphate, sulfate, polysaccharides, lysine/arginine/ornithine, and histidine. The PBP2 bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. Besides transport proteins, the PBP2 superfamily includes the ligand-binding domains from ionotropic glutamate receptors, LysR-type transcriptional regulators, and unorthodox sensor proteins involved in signal transduction.	1.49857e-57
CP025746.1\|QAA31196.1\|1292692_1294042_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
CP025746.1\|QAA31210.1\|1313914_1314526_+\|non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	2.37157e-96
CP025746.1\|QAA31201.1\|1300896_1301613_+\|16S-rRNA-pseudouridine(516)-synthase	gnl\|CDD\|211327	cd02553, PseudoU_synth_RsuA, Pseudouridine synthase, Escherichia coli RsuA like. This group is comprised of eukaryotic and bacterial proteins similar to Escherichia coli RsuA. Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to pseudouridines (5-ribosyluracil, psi). No cofactors are required. E.coli RsuA makes psi516 in 16S RNA. Psi at this position is not generally conserved in other organisms.	4.76132e-94
CP025746.1\|QAA31211.1\|1314545_1315019_+\|metallophosphoesterase	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	1.94839e-39
CP025746.1\|QAA31193.1\|1290257_1291238_+\|dipeptide/oligopeptide/nickel-ABC-transporter-ATP-binding-protein	gnl\|CDD\|223521	COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism].	0
CP025746.1\|QAA31197.1\|1294485_1294935_+\|YaiI/YqxD-family-protein	gnl\|CDD\|178882	PRK00124, PRK00124, YaiI/YqxD family protein.	2.18822e-72
CP025746.1\|QAA35232.1\|1295555_1296785_+\|group-II-intron-reverse-transcriptase/maturase	gnl\|CDD\|275209	TIGR04416, hypothetical_protein, group II intron reverse transcriptase/maturase. Members of this protein family are multifunctional proteins encoded in most examples of bacterial group II introns. These group II introns are mobile selfish genetic elements, often with multiple highly identical copies per genome. Member proteins have an N-terminal reverse transcriptase (RNA-directed DNA polymerase) domain (pfam00078) followed by an RNA-binding maturase domain (pfam08388). Some members of this family may have an additional C-terminal DNA endonuclease domain that this model does not cover. A region of the group II intron ribozyme structure should be detectable nearby on the genome by Rfam model RF00029. [Mobile and extrachromosomal element functions, Other].	9.46951e-172
CP025746.1\|QAA31194.1\|1291239_1292211_+\|peptide-ABC-transporter-substrate-binding-protein	gnl\|CDD\|226967	COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism].	2.64205e-151
CP025746.1\|QAA31203.1\|1305405_1307400_+\|DNA-ligase-(NAD(+))-LigA	gnl\|CDD\|236137	PRK07956, ligA, NAD-dependent DNA ligase LigA; Validated.	0

>CP025746.1|QAA31201.1|1300896_1301613_+|16S-rRNA-pseudouridine(516)-synthase
MERLDKILSNLGYGSRKEIKALVKAGAVIVDEKVVKDNGMQLDPEKSKIVVNGEELTYRKYIYLMMNKPDGVISATFDSKDETVIDLLYPEHQVFNPFPVGRLDKDTVGLLLITNDGELNHKLISPKWHVDKVYYAEIDKAVDEKDIERFKEGIELDDGYKCMSAKLEIEEATDEGSKVLVTVQEGKYHQVKRMFEAVGKKVVYLRRIKFGNLPLDETLEEGEYRELTEEELNVLINN
>CP025746.1|QAA31200.1|1300043_1300799_+|lytic-transglycosylase
MKIDKTEQMLGVQMLSSYMKQAMGDSQAFDLVMESLMKNITEDNSSSNILSALTGGASDSSGASVDQKVSAGTDLSKLGMDVPGDYDGSNTVDLNNIKPYSNAVLKFTSKGANVSGSNMERINNAVTAASQRYGINEDLIRAIIKQESGFNPYSVSGVGASGIMQIMPENFRNLGITDPFNIEQNINGGTKLLKGYLDKYNGNTEMALAAYNGGPGTMQRRGVSSPNQIYKMPSETVSYVNKVMNYFRNGV
>CP025746.1|QAA31199.1|1297479_1299483_+|triple-tyrosine-motif-containing-protein
MEELVLLFDKNSPQEKDTEINISVGNYSGDGCSFKFLVGIDGIWSDIKDFSKESSCTWKPEKDGKYFIMVQVKRDNSKKPYDFIIRGDYFIGEKEENLIKDVYIENQEIEIGKKITIQVETSRVPSMYKYWISGKDGWELIKDYSTENVLSFTATEVGKHDILVECKTPESKDNFDDFKTITFTVKDIERPEIIDFKCLTKDLLVDEELIFQVYTRQDDTRTTLYKFLKINPDGKTICVQDYSSRRMVGFNEKQPGSYKILCLARDMYSEREYDDRAIMVYEVKPYYPINIKTFTTDLNSPQAEGTKILLRGVVEGGKELLYRFKIDGNYGEDSGYIRTSSFLWEPKYEGQYSITMFVRDESFQGEYEEKKSIEFLIEKKRQKAVKITDVLLAKNSNYLINDPINIKVIAEGGIDLKYSFVVYKDKKEKERVSYGNVNWVNFIPETPGEYEVELKVKDKYSEKDYDSHQFVYFNVKEYIEGNIDYVLLPSKEYYLVEDEVELEVISQNTKDVLIKYEILIDGHIVEETDYIGSKKFTFKPKRAGKYVVEMYSKNKKCKEGFDCKKSISIFVNEAPPVTGTKILCNKTSFKISDDITFNVESCGGKEVCYEFYIMEKGNWMLVQKYSRKSYYTLMPFVQGTYRMLVLAKSYYRKCAYEDYDIFEFKVE
>CP025746.1|QAA31198.1|1296973_1297165_-|hypothetical-protein
MKDPIKKEIDPDSNNTFNNTYGSIINSANGIGIGIIDSDSNLNSLKPNSHSDINTPKKYTPGD
>CP025746.1|QAA35232.1|1295555_1296785_+|group-II-intron-reverse-transcriptase/maturase
MNLALKRVISNKGSHGVDGMPVYELKQFLKTNWISIRENILNGEYRPMPVRRVEIPKPNGGTRLLGIPTVLDRLIQQAIAQELNSIYDRRFSESSFGFRPQRGAKDAIKKAEQYINEGYRWVVDMDLEKFFDKVNHDILMYKLSRSIKDKRVLSLIRKYLQSGIMINGVVVRNEEGTPQGGPLSPLLSNIMLDELDKELEMRGHKFCRYADDCNIYVKSERAGKRVMENITAFIERKLKLKVNREKSAVDRPWRRKFLGFTLNLMYGKAYASISKQSLNRYKDKIKEILSRSKPMTLEQRVGKLNLINVGWINYYGIAKCKGIVEHLDIWIRKRLRMCIWKQWKKVRTRYKNLKKLGLEHYQAIKFANTRKGYWRVANSAILNTTLTNKFFSDLGLKSLTRQYIKIHST
>CP025746.1|QAA31197.1|1294485_1294935_+|YaiI/YqxD-family-protein
MKIIVDGDGCPGKAYIEKAAKEYDIEVVIYCDMHHYITSDYSKVVIVESGFQSVDMYIINNAVKGDIIITQDYGVAAMVLGRGCYALNPKGSVYDDKNIDRLLFERHISQKVRRSGGRTGTHKKRTEEDDLKLYNSLKRLIEKGLERFE
>CP025746.1|QAA31196.1|1292692_1294042_+|glucose-6-phosphate-isomerase
MKKGLTLDLSKVAPYLNEHEVGYMEDMVVSAHNKIQNKSGAGSDFLGWVDLPVNYDKDEFARIKKAAEKIQSDSDALIVIGIGGSYLGARAAIEMLTNNFYNALPKGKRKTPAIFYVGNNISSTYMADLLEAIEGLDISVNVISKSGTTTEPAIAFRIFKDYMEKKYGKDEAKNRIFATTDKSRGALKSLADAEGYETFVIPDDVGGRFSVLTAVGLLPIAAAGISIDEMMQGAADARETYSKASLAENDAYKYAAVRNALYNKGKTTEILVNYEPSVHYFNEWWKQLYGESEGKDNKGIFPAAVDFSTDLHSMGQYIQDGRRNIFETVISIEKAKKEITIEATEDNLDGLNFVAGKTMDFVNKKAFQGTVLAHNDGGVPNVVVNVPEVTPYYFGQMVYFFEKACAISGYLLGINPFDQPGVEAYKKNMFALLGKPGFESLKEELEGRL
>CP025746.1|QAA31195.1|1292402_1292609_+|hypothetical-protein
MFKFGKREEQELSEEEKFLKEMKEQEKPTFKDLLAIIIAQYIIILPMLIIAIILFTLIMLFITRVWLR
>CP025746.1|QAA31194.1|1291239_1292211_+|peptide-ABC-transporter-substrate-binding-protein
MEDNTILKVENLKKYFPIKAGVFQKTVGNVKAVDDVSFELKKGETLGLVGESGCGKSTTGRTILRLLERSEGKVIFEGQDIFELSKKDLRAIRPKMQMIFQDPYSSLNPRLSVGELVGESLLDHGIAKKDEIADLVAETLERSGLAAYHMKRYPHEFSGGQRQRIGIARALILNPSFIVADEPVSALDVSIQSQIINLMTDLQQERGFSYLFISHDLSVVKHISHRVGVMYLGSMVELAPKKELYDNPLHPYTKALLSAVPVPDPTLKRDRILLKGDIPSPANPPSGCKFHTRCPYAMEKCSKQAPIYKNVGNEHWVACHLVD
>CP025746.1|QAA31193.1|1290257_1291238_+|dipeptide/oligopeptide/nickel-ABC-transporter-ATP-binding-protein
MAKNLVEFKNLKTYFYTGGGIVKAVNDVSFNIREGQTVCVVGESGCGKSVTAMSLMKLIPNPPGKIVGGEILFNGKDILKFSDEELRHMRGNEVSVIFQEPMTSLNPVFKIGDQLCEAIILHQKLSKQEAAEKAIEVLKITGIPRAEEIMKSYPHELSGGMRQRVMIAMAVSCNPKLLIADEPTTALDVTIQAQILDLMRDIKKKLNTSIMLITHDLGVVAEMADYVVVMYAGKVIEEAPVEELFKNPLHPYTQGLLKSKPLLTEETGDRLYSIPGQVPNPIGMPDNCYFNSRCDRCMNKCKDAQPTLINVNPTHKVSCWLYEEGK
>CP025746.1|QAA31203.1|1305405_1307400_+|DNA-ligase-(NAD(+))-LigA
MDKIKRIEELVEELNKYAYEYYTLSNPSVSDKDYDRKYDELLTLEKETSYVLPYSPTQRVGDTALAEFSKYTHKARLWSLDKAQTLEELKEWHNRNVKFVEDYNRSHEDKLPVLRYIVTKKFDGLTINCTYDVNGVLTKAATRGTGEIGEDVTAQAKTIKSLPLKINCSDVLEIHGEAIMTKEAFDRYNEVSEVPLKNLRNGAAGALRNLNIKETAKRNLSAFFYDVGYKEGTPFSSYEEMMNFIKEKGFPIDEYMKICHTMEDIEREIEYIKDIRFELNYDIDGAVVAIDDMRTRELLGYTIKFPKWAIAFKFEAQEATTKLLDVEWNVGRSGRVSPTALLEPVELAGVTVKRATLNNMDDVRRKGVLIGAEVFVRRSNDVIPEIMGVAGEPGEDTREIVPPETCPACGSHIVLNGAHYFCENTLSCKPQMVKTIVHYASREAMNIEGFSEKTAEQLFEKLEIKSITELYKLEKESLLTLEKFGEKKAQNLLNAIESSKDCQLHSFIYALGIPNVGVKTAKDLVKRFKNIDNLEKATYEELISVSDIGGIVAKSIIDFFSEEKVIATINELLELGVTPKYEENEVKENPFEGKTVVVTGSLASYSRTEIKEKLESLGAKVSGSVSKKTDYVIVGEDAGSKYTKALELGLKILSEEDFNSLIGG
>CP025746.1|QAA31204.1|1307401_1307674_+|hypothetical-protein
MRRLISIFSLLSAMITSVAIILTLLTTYQFIYINEVFNSYYPIQIGLSITMIFWGIRFFLLEKGSKKLTYPLICFIIATISIVFMGLYVK
>CP025746.1|QAA31205.1|1308347_1308722_+|hypothetical-protein
MTKNCWIYGIQYEVIIKSKLTLQIKLIGKREKVFLMFDKTLVVFKEDYYRFLNLAESIEADKAYFITTGVFESEIYKMNSWKLSAPKIILEDSKKFLKRQVWFKRKYNEHLKYDKLDFHRYLPV
>CP025746.1|QAA31206.1|1308782_1310408_+|hypothetical-protein
MKFKLSKLLILIMIIVSLQGCSYTTPERTIDDSNSITYAVESFPESIDIKTDFSIRDKEIFYSIFDGLVDKNEKGDIVPELAESYSVSKDGLEYVFKLRDDIYWNDGSKITADDFLKFFKTIISPKNKEAYVSELYNIYGVKDYHEGRGTFENNVAISKGDKNSIKFRMNVKDNDFVKKLSEGCFKLRDISSKLDNYKTEFSSIKYSGEYSIKNIKDSKEIELQQNDKYWAKKSMEPKEIILKIYSGAELALADFESKKNVDIILDVPNSEISRLTSKNLVEIFPADKMKIIEFNPDSKDDKINLSMRRALEKTILSSITGNSLVKEDKFQLALGELERKGLKSNESIVSSNVTDASKNFDVIKEQVDSLLEKSNYKGGSLRLVCLNNDENKNICDFISKNLKDLYGITVKYNLLEQDQLDKTVKSGEYELLLEDIGSSSDVYGELVTKWGSNNKNKSISNNDITNILSSIDKKEDVDNRNKSLVKLLRDNTYIVPLLFDNLICVKSDKIKNLTFDKDGALELKKIELSSSTEDLKDKDAD
>CP025746.1|QAA31207.1|1310570_1312043_-|hypothetical-protein
MKYIGPFFRINSLTSLEIEGQLFFLSREALKHIVLQSRCGLIASNKTSKKYLSNNDINIIKDFSPLLCIYKKGSPKFASTKHFHGWSEDGIKKEINSSANALMTLSILELSTFYEKFQKSNSINYSISKIYKALAKQQLDFYSSQLRNADGVFVDKKNLSEGNSEFNLVDKDKKFKFSDQAMMMVAYYLYWNICTLDEDREMYKNFSLDILNMFLNYKDEVYDLSFQECCKICLAFNALYSYSNNDDAKLFLIDISDYLIDKYGEKNYVLDNLDYSCLLAINLYLSYKNTGLDSFKDNFIQISERHRRLFDDDSGIFLKPMEKKDIKYSCNEINNYMLNMLIYEEFESSRDFKAMISTVFRQFYISSGLVTSWPEAPSLDNEERYRDLTLNSSDLIDESMFRVSTATSPDTTGTAPIFLKKISYSKKKESFIASKLSFDSLKNLSNFYLIILLFKDKIMNSSFTPDNPLKDEKLIAETETIKETEPSEAD
>CP025746.1|QAA31208.1|1312171_1313152_+|AIR-synthase
MKSGKLNWDDLKGLINNNKSVKRDEVRVRNGVGEDCSVIDFGEYECVISTDPITGAAENIGRLAVHVNCNDVASCGVEPLAILVTILAPEDTTYEEINEIMRQIDEETSKINVEIIGGHTEITTAVNRIVVSCTVLGKCISGRAVSTAGAQVGDDIIVTKNLALEGTNIIVNDKYERIKNVLTEEEIDEAREYINKISVIMEGKISGEFGVNCMHDITEGGVLGALWELADASNLGFKVYEDKMPISVVTRKVCKEFNIDPLRLISSGSMIITTKNGESLVNLLKENGINSTIIGKITEEKGILVKLSEGEVIVPQPERDELFSIY
>CP025746.1|QAA31209.1|1313166_1313913_+|ribonuclease-PH
MRIDGRKNEGLRPIKLTRNYTKYAEGSVLIEVGDTKVLCNASIEEKVPPFLKGSGEGWITAEYNMLPRSTQSRKPRDIAKLKIDGRTMEIQRLIGRALRSVVDLKALGEKTIWIDCDVIQADGGTRTASISGAFVALVDAVNRLHKHQPFKVFPIRSFVGAVSVGILNDEKIIDLCYEEDSKAKVDMNIVMTDGGEFIEVQGTGEESPFSRKDLDELLSLGEKGVKHIIQAQKDVLKKDSLWIGTGGE
>CP025746.1|QAA31210.1|1313914_1314526_+|non-canonical-purine-NTP-pyrophosphatase
MKKIIVASNNDHKIKEIKQILKDIDVEVKSLKDCNIDIDVVEDGKTFIENSYKKAKEIYEYVKKDGLNDFLIMADDSGLEVDYLNGEPGVYSARYAGEHGNNKKNNEKLLEKLKGVPSEERKAAFVCAIVLIDETGKTVKVEERAYGVIKEELTGVEGFGYDPLFFVPEFNKTFAEMTADEKNSISHRGKALEVIKKELKNLI
>CP025746.1|QAA31211.1|1314545_1315019_+|metallophosphoesterase
MLVAVVSDTHNVTEYIEKVKRLIKKSDVLIHLGDNITDLDYLISDYKGKVYGVKGNCDFSNEYPSEMLVKVLDKKFFITHGHKYNVKYELNSIYFKAMEVEADAALFGHTHQSLITQERNLWIINPGSASLPRMSKRSIAFIEVVEGKPIYPYLVEV
>CP025746.1|QAA35233.1|1317379_1318243_-|site-specific-integrase
MFLNKIKPTNINKLYLHCINDLGNSSTTVRQYHWILSKAFKDALKWKIIEYNIMDSIEPPKKVKKELTVYDKDQLFKLLDRIKHMTVYMPVLISSTTGMRLGEVCGLRWKDVDLDNKVIYVTRQLQEVKGKLELLELKTSTSKRAIPIIEDTRRALEDLKDICEYNKSNHANYHKEGFVICKGDGTPYDPEYVSRNYRRVMKQYKVCTDLNIPYIRFHDLRHTYATLMLEAGVNPKIVSGLLGHNTVGMTLNTYSHRLPRFDETAVSKLEDLLSPAKNDSPQNSPQN

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Crispr_ID: CP025746_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025746_2

3881639-3881775

Orphan

Consensus_repeat	Method
CCAGAGGAGCTTTAAAAATAGATTTCAGATCGAAGTGTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025746_2

>merge|CP025746|2|3881639-3881775|CRISPRCasFinder
CCAGAGGAGCTTTAAAAATAGATTTCAGATCGAAGTGTTTCATCTTAGATGCACCACTTCGTAATTAAATTTATATTTTCAAACTCTCCTCTCAGCTACCAGAGGAGCTTTGAAAATAGATTTCAGATCGAAGTGTT

>CP025746|2|2|3881639-3881775|CRISPRCasFinder
CCAGAGGAGCTTTAAAAATAGATTTCAGATCGAAGTGTT	TCATCTTAGATGCACCACTTCGTAATTAAATTTATATTTTCAAACTCTCCTCTCAGCTA
CCAGAGGAGCTTTGAAAATAGATTTCAGATCGAAGTGTT

Protein	Signature genes	Signature genes Name	Protein_function
CP025746.1\|QAA33303.1\|3871477_3872641_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377417
CP025746.1\|QAA33313.1\|3884242_3885265_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|119385
CP025746.1\|QAA33302.1\|3870550_3871132_+\|DUF1349-domain-containing-protein	unknown	unknown	gnl\|CDD\|377771
CP025746.1\|QAA35332.1\|3877602_3877785_+\|putative-motility-protein	unknown	unknown	gnl\|CDD\|379452
CP025746.1\|QAA33316.1\|3888005_3888215_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33311.1\|3882077_3882443_-\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33305.1\|3874369_3875017_-\|phosphohydrolase	unknown	unknown	gnl\|CDD\|182251
CP025746.1\|QAA33304.1\|3873124_3873970_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224203
CP025746.1\|QAA33317.1\|3888498_3888933_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225293
CP025746.1\|QAA33318.1\|3888929_3889349_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376187
CP025746.1\|QAA33308.1\|3877939_3878230_-\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33306.1\|3875069_3877079_-\|S9-family-peptidase	unknown	unknown	gnl\|CDD\|224422
CP025746.1\|QAA33309.1\|3879905_3880994_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379369
CP025746.1\|QAA33315.1\|3886378_3887545_-\|alanyl-tRNA-editing-protein	unknown	unknown	gnl\|CDD\|225427
CP025746.1\|QAA33314.1\|3885382_3886237_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP025746.1\|QAA33307.1\|3877093_3877273_-\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33312.1\|3883750_3883948_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225253
CP025746.1\|QAA33310.1\|3881007_3881535_-\|RNA-polymerase-subunit-sigma-24	unknown	unknown	gnl\|CDD\|213752
CP025746.1\|QAA33319.1\|3889496_3890372_-\|molybdate-ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|130643
CP025746.1\|QAA33320.1\|3890535_3891351_-\|molybdate-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270256

Protein	Function_ID	Function_description	E-value
CP025746.1\|QAA33303.1\|3871477_3872641_-\|hypothetical-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	3.53749e-28
CP025746.1\|QAA33313.1\|3884242_3885265_-\|hypothetical-protein	gnl\|CDD\|119385	cd06525, GH25_Lyc-like, Lyc muramidase is an autolytic lysozyme (autolysin) from Clostridium acetobutylicum encoded by the lyc gene. Lyc has a glycosyl hydrolase family 25 (GH25) catalytic domain. Endo-N-acetylmuramidases are lysozymes (also referred to as peptidoglycan hydrolases) that degrade bacterial cell walls by catalyzing the hydrolysis of 1,4-beta-linkages between N-acetylmuramic acid and N-acetyl-D-glucosamine residues.	3.461e-65
CP025746.1\|QAA33302.1\|3870550_3871132_+\|DUF1349-domain-containing-protein	gnl\|CDD\|377771	pfam07081, DUF1349, Protein of unknown function (DUF1349). This family consists of several hypothetical bacterial proteins but contains one sequence from Saccharomyces cerevisiae. Members of this family are typically around 200 residues in length. The function of this family is unknown.	2.01262e-80
CP025746.1\|QAA35332.1\|3877602_3877785_+\|putative-motility-protein	gnl\|CDD\|379452	pfam14070, YjfB_motility, Putative motility protein. This family of proteins is regulated in B. subtilis by SigD, and is likely to be involved in motility or flagellin production, Proteins in this family are approximately 60 amino acids in length, and contain two highly conserved asparagine residues.	3.16291e-11
CP025746.1\|QAA33320.1\|3890535_3891351_-\|molybdate-ABC-transporter-substrate-binding-protein	gnl\|CDD\|270256	cd13538, PBP2_ModA_like_1, Substrate binding domain of putative molybdate-binding protein;the type 2 periplasmic binding protein fold. This subfamily contains domains found in ModA proteins of putative ABC-type transporter. Molybdate transport system is comprised of a periplasmic binding protein, an integral membrane protein, and an energizer protein. These three proteins are coded by modA, modB, and modC genes, respectively. ModA proteins serve as initial receptors in the ABC transport of molybdate mostly in eubacteria and archaea. After binding molybdate with high affinity, they interact with a cognate membrane transport complex comprised of two integral membrane domains and two cytoplasmically located ATPase. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis. The ModA proteins belong to the PBP2 superfamily of periplasmic binding proteins that differ in size and ligand specificity, but have similar tertiary structures consisting of two globular subdomains connected by a flexible hinge. They have been shown to bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	2.80226e-73
CP025746.1\|QAA33305.1\|3874369_3875017_-\|phosphohydrolase	gnl\|CDD\|182251	PRK10119, PRK10119, putative hydrolase; Provisional.	2.67473e-49
CP025746.1\|QAA33304.1\|3873124_3873970_-\|hypothetical-protein	gnl\|CDD\|224203	COG1284, COG1284, Uncharacterized conserved protein [Function unknown].	7.85355e-58
CP025746.1\|QAA33317.1\|3888498_3888933_-\|hypothetical-protein	gnl\|CDD\|225293	COG2445, COG2445, Uncharacterized conserved protein [Function unknown].	2.08917e-05
CP025746.1\|QAA33306.1\|3875069_3877079_-\|S9-family-peptidase	gnl\|CDD\|224422	COG1505, COG1505, Serine proteases of the peptidase family S9A [Amino acid transport and metabolism].	1.23814e-157
CP025746.1\|QAA33309.1\|3879905_3880994_-\|hypothetical-protein	gnl\|CDD\|379369	pfam13786, DUF4179, Domain of unknown function (DUF4179).	1.94989e-17
CP025746.1\|QAA33315.1\|3886378_3887545_-\|alanyl-tRNA-editing-protein	gnl\|CDD\|225427	COG2872, COG2872, Predicted metal-dependent hydrolases related to alanyl-tRNA synthetase HxxxH domain [General function prediction only].	9.15595e-70
CP025746.1\|QAA33314.1\|3885382_3886237_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	2.08205e-13
CP025746.1\|QAA33318.1\|3888929_3889349_-\|hypothetical-protein	gnl\|CDD\|376187	pfam18765, Polbeta, Polymerase beta, Nucleotidyltransferase. A member of the nucleotidyltransferase fold found in polymorphic toxins (NTox45) and polyvalent proteins.	2.70625e-12
CP025746.1\|QAA33312.1\|3883750_3883948_-\|hypothetical-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	0.0025933
CP025746.1\|QAA33310.1\|3881007_3881535_-\|RNA-polymerase-subunit-sigma-24	gnl\|CDD\|213752	TIGR02954, RNA_polymerase_ECF-type_sigma_factor, RNA polymerase sigma-70 factor, TIGR02954 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family. This family is found in certain Bacillus and Clostridium species.	2.77786e-38
CP025746.1\|QAA33319.1\|3889496_3890372_-\|molybdate-ABC-transporter-permease-subunit	gnl\|CDD\|130643	TIGR01581, Molybdenum_transport_system_permease_protein_modB., NifC-like ABC-type porter. This model describes a clade of ABC porter genes with relatively weak homology compared to its neighbor clades, the molybdate (TIGR02141) and sulfate (TIGR00969) porters. Neighbor-Joining, PAM-distance phylogenetic trees support the separation of the clades in this way. Included in this group is a gene designated NifC in Clostridium pasturianum. It would be reasonable to presume that NifC acts as a molybdate porter since the most common form of nitrogenase is a molybdoenzyme. Several other sequences falling within the scope of this model are annotated as molybdate porters and one, from Halobacterium, is annotated as a sulfate porter. There is presently no experimental evidence to support annotations with this degree of specificity.	3.44827e-70

>CP025746.1|QAA33310.1|3881007_3881535_-|RNA-polymerase-subunit-sigma-24
MELTSNIEKVDSDSSDIVLAKKGDKDAFIRMIQSNKQSLYRVAVSFLSDSHDVEDAIQASIIKAYEGIGKLRKDEYFKTWIIRIVINQCKDILKKNKRLISIEEVSIDEGFTDDLTKLEIISAIKQLDSDLRIVTTLFYFEDMAQKDIAKILSIPEGTVRSRLSRARSKLYELLK
>CP025746.1|QAA33309.1|3879905_3880994_-|hypothetical-protein
MNNNFIDEMISEKANLEKSYIPVEVDNIIGDTLEQLPKKINRRVNLPKKLILAATIMLAMLTITTMAFPAYAKNIPGVNSVFKLFSKENMIEPIYVQYGSNMELSSESNGVTLTINDVACDGLELAIGYTIESKKDIKDGMNLIMNSSAKFNNTDLNGAGLNGKAIDKNTYKGVIHYGFDKKNISEVKKIIDSKDDKKEFTVQLKFRNIDDNIKGEWKFNFKGSLASILKERKEINAEVDLSSLANELKVHTLTISPLNTELSVTGGVKSDNKDLGIFAYDDKGRFAFGSGMGGDGNEDGTFDYGVDFKNVNTDAKELTFIPYILNKDNGVEVGDTIEPLNFSGKTILDFKKMGVMTISIKE
>CP025746.1|QAA33308.1|3877939_3878230_-|hypothetical-protein
MTIERVEQKDKSTLLYYKKEGYVKGLDVFQFEVIGKDSKVYVNYGKMGIDAKDLGDDHYVVELPKLNENQKYTIKTTNFGQLFDVREDLKFKIKVN
>CP025746.1|QAA35332.1|3877602_3877785_+|putative-motility-protein
MITDIANLSITMKQENLSQEVGTELTKKTIDTSKDDAQALIKMMELSVNPNVGIKLDVKA
>CP025746.1|QAA33307.1|3877093_3877273_-|hypothetical-protein
MLEVDYTHVAFAIINLVVLIAIIFVVIMLFKKISYYLNSTKRIEDKVDKILEKLEEKNN
>CP025746.1|QAA33306.1|3875069_3877079_-|S9-family-peptidase
MGAISLVKKVNIVDDYHGTKIYDPYRWMEDIHSEDVKAFVEEHNRISEEYIKSYEGYEAIKDRISELWKYESYSSPFKKGEYYYFFYNDGNSNQPSLYRAKDIKGEKFLLVDPSVYSEDSTSSIGAIAVNDKKDILAYSISQKGSDWQVIKLLDMKTMTTLKEEINWCRFTSITWLEDNERFIYSRYPQQGAMEDEELSYHNMVCIHRLGSSQDEDEVLIDGSERSPYSNYVSLSYDKKYILIEKSIGTSTENLVHLKEIDSENEFFNPLEGKNALWYFLGNKSFKFYFLTNYNAPKNRIVEIDIRNFEEENWVEIVPECATDTISDAVYNDGYIFMSVMHDAYHKAALINVESKEVTYLEIGAIGAISEISCGEKGKEIFFLFASYFVPNTIYKVKLEDKTLEKVINPRIPFDFSNYETKQVFVKSKDGTKIPMFLNYKKGIKLNGENKTVLYAYGGFNLNRIPEFRVPEIVWMERGGIYAVANIRGGNEYGEQWHKAGMLENKQNCFDDFISCGEYLIEENYTSSKKLAIRGRSNGGLLTGACMVQRPDLYGAVITQVGVLDMLRYHKYTIGRFWIPEYGDAENNPEDFKFMIKYSPLHNIRSGIVYPPVFVPTGDNDDRVLPCHSYKYVATLEEVSSGVNPYTIKGRKECRTWTRQAYIKTNRSRS
>CP025746.1|QAA33305.1|3874369_3875017_-|phosphohydrolase
MNNYIKNSLIDIAKEKIGSNDPSHDINHALRVLNNAEIICNKEGGDMDIVIPAALFHDIICYQKNSQKSALSSKHSADMAADILKNFKEYNSSKIAMVYEAIEKCSFSKGIIPNFLEGKIVQDADRLEATGAISIMRTFCSAGLMKSSLYNVNDPFCVERVPNGKQYALDLFYSRLLKIKNTMNTETGRILAEERSLVLDQFLDSLRRELGIIDK
>CP025746.1|QAA33304.1|3873124_3873970_-|hypothetical-protein
MKNKIKDFILLFIGSVLVAVGTYFFLAPNKIAAGGISGAAIIINNLIPKLPIGGLMMSMEVVLFLLGIIIIGPFFGGKTIFCSFSISGLILIFEELFPKVQPINNDILVQLIFGVLICGVGMGIVFNQNASTGGTDIIAKIINKYFNISIGNSLLAADIIVTVAATSVFGLNVGIYSILGVIINCTLIDKVINTLNTYKQVAIISSEGEEIKRYIMDVLERSATIYYAKGAYNNNESEVITTILSRKQFQQLKQFIADIDDRAFITINEVNEVLGEGFTFS
>CP025746.1|QAA33303.1|3871477_3872641_-|hypothetical-protein
MGLFNVSATIIIFISFVIWVIYRLILWRKNKKINYLREICMNIFFIYLLVVLSLTLFKMGELMISSHFNRSINIIPVIETIRMFNGRGSLRIAIYNVVGNSLVLIPFGFMLPILFEKTNKISKIAFYGAMTSIFIEFCQYFTANNTTDIDDVILNTFGAVIGLVCYRIFNKILKIIKLNHLVEKITDKENNKLLRLAIKPLSVMVAATLVLCSIAFYKNTYSNKLSDKDLYVQAFNQFSGQLVASKNLKENKILLIDNKDYLELEDMPKTIGNRYVRDASVQMDMRNRDHGYYVDILYSDNGHKAQVVAFGKNKSSKTIEINFNGKLIKEELKPKEFFIVAHPANENLAENSDVYNFGRGECKDLTIKFYDDKGKEDKDMEDSFGHN
>CP025746.1|QAA33302.1|3870550_3871132_+|DUF1349-domain-containing-protein
MFNLDTHDMNWIFKPKAFEVTEDKIVIKTEGNTDFWQNTYYNFQHDNAPALLASTSEKFFSFTVKTTFDSKAQYDQCGVIIYQDSDNWFKASIEYEDEHYQRLGSVVTNLGYSDWATTDIDSNIKSMYYRLSRRGSDFCVENSYDGITFYQMRIFHLFKGAEEINFGIYACSPSEASFDAIFTEMKVTECMWH
>CP025746.1|QAA33311.1|3882077_3882443_-|hypothetical-protein
MRNKLAIITVGIAAILIIGYFKFFSDFSYLVNTKGNITTANSSGSGGTFKGKKGEKVDFFCNSTVKQGNLAIVLKDSNGKVVKNFEANKDYKEQISLDKDGEYDFSVKYENFVGIFDIKCK
>CP025746.1|QAA33312.1|3883750_3883948_-|hypothetical-protein
MDILKSALEFHRPVTIIYMDKDKKITRRNIQVLGIKGEKVEAFCYLRRQKRYFKRENILAAQYLH
>CP025746.1|QAA33313.1|3884242_3885265_-|hypothetical-protein
MYQGIDISNYQTNVDYSRVKYSGIQAAYLKASEGTSYRDVMMATHYNGFKAQGVLVGFYHFFRARSVENAIDQANFFVENTRGYAVDLKYACDVETTEGLGKDLLSSCVKTFIDRVKELTGIDCIVYTGSYFSKNNLTTVLRGTQLWLAHYTTGTPSWNTEIWDTWSGWQYSDSGNVNGIFGNVDMDQYKEDLLVDRSTPPVDPTPPMGQVNGANAVVQNDWFYGRTSTGDIDPGRRVDIGDRIKVIDVSYSRQLDLVEYPIPGGTRQTYIRNVVSNIGYLNAPIRINGYRDVYDRFSGNRIGSVNNENVIVLEDLGNNRLNVVYSTDKGSWTKSGVINR
>CP025746.1|QAA33314.1|3885382_3886237_-|GNAT-family-N-acetyltransferase
MIIKSYNNLNDELVNAIKELEVVCKKQDNLKGDIFLDNALNFNKEINNLFMANEGERLVSIIYLFLPTKAEAEVSAYTHPDYRQKGYFKELLNKAKEEISKYDISDFLFVCESESKDGKLTLKAIEAKYDFTEYLLRYNKKSDKVAADSDITLEKCKLKHLDAIIDTSMNAFGESYEDAKNYATNTIDSKDRDLYLVNYEDKIIGMCCLNYSEEDVFLFGFAIKKEYQGRKLGKSALKKIINLVVDEKNKNLRLEVDSNNLVAFNLYKKSGFEIINAFEYYRKK
>CP025746.1|QAA33315.1|3886378_3887545_-|alanyl-tRNA-editing-protein
MTEKLFYKNSYICEAECEVEDIIEKNDKYEVILKSTPFYPEGGGQPCDLGTIDDIKVDYVYEEEDIIYHVVKEKPEGRLVMCKVDYDRRLDHIQQHSGEHLLSAAFFKLFKIVNAGFHLGEDYVTIDMLFKDMTEDMIREIENEVNKYIYRNEPVSTYFLTKEEALELPLRKGIKAEGKIRIVQMGEATDFSACCGTHVVRTGEVGVVKIIKYENYKGMTRVYFKCGLRALKDYQEKHDCITDLTRNLSVEATGINNVIKNQRNEIVELKRKLSALYSNLATREAEKLLSNNESRFIIAQYKEEGFEFLEKLHDQLKDTNHILILGSLKDKKLILAHNGSFDFKCGNLFKEKLKEFGGKGGGNDKRAQASFEVEASIKNFIEYLREVL
>CP025746.1|QAA33316.1|3888005_3888215_+|hypothetical-protein
MKKTREPKNDKPVTSPSTSGSYGISTSSNITVESSDIEGDNSDSLIPDFHEDKEWSSKTTSTIYNDDHK
>CP025746.1|QAA33317.1|3888498_3888933_-|hypothetical-protein
MNDERLIKIIEDLEECKSDINECLEVLEKYKEDQLITKLAKSSLRQLFVGFHTILEDFCSIALREIRRFKIGISLSDSFKLLRKSDVIDERTYLFLEKSRLVRNRISHRYKEPSHEELLEHIVNNTDKIDIIINIAKKFLRKYS
>CP025746.1|QAA33318.1|3888929_3889349_-|hypothetical-protein
MDSEEERKYALEKLNSEEVQNFIDEHNISNLILFGSLNHGEFNEISDVDIALLNEEKISLDTILELELFLENLLNRPIDVVDLRSEKLDLFVKINILNNGKVLFSKDNNKMFDIICDEVDRTYRENENFMYFRRIDVLS
>CP025746.1|QAA33319.1|3889496_3890372_-|molybdate-ABC-transporter-permease-subunit
MIQDRISEIKENKRYSNTLNKRWSRKNCINKLLVIPLVAAISIYIVIIVLPILTMINYSGVHNIISTLYVKENIASVLLTLETSTMALILTFIFGTCMAFYLRFVKNKALAKVLSILIELPIVLPPAAVGIALLLTFGSNGIIGRLLDSYGINIVFTPAAVIIAQFFVSSAFYVKVLSNSINDVPKEIFEATYVLGAGKVETICKIIIPMLKRAIISGLILSFIRSIGEFGATLMFAGNVLNKTRTIPLQIYTYMQTDIKMATSFAAILYLVSFLLLFCVRVFLRDDGDML
>CP025746.1|QAA33320.1|3890535_3891351_-|molybdate-ABC-transporter-substrate-binding-protein
MIRKVKLSGLVLVLAIVLSAGLMACTKTTRKTEDGSSKKIMVFAAASLTESFNDIGNQIKKDKGIDVTFNYAGSQALVQEIDQSNGADVFASANTDYVDQLKKSDKVEESKIFAENKLIICTSKSSKKSIKNFKDLAQGNLKLVVGDKAVPIGSYFYKALDSQKNKNVIDDNTYKSILSNIKSSELNVKDVLAKVVLNEADAGVVYKTDVNEANKEKVNMIEDVAFNELKVQYPVALLKASKNKDTAKEFVDYIVEGKGKEILKKYGFEIK

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Crispr_ID: CP025746_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025746_3

4098128-4101105

TypeI-B

II-B

Consensus_repeat	Method
ATTTAAATACATCCCATGTTAAGGTTAATC	CRISPRCasFinder
ATTTAAATACATCCCATGTTAAGGTTAATC	CRT
ATTTAAATACATCCCATGTTAAGGTTAATC	PILER-CR

45 spacers

cas2,cas1,cas4,cas3,cas5,cas7b

The CRISPR arrays of CP025746_3

>merge|CP025746|3|4098128-4101105|CRISPRCasFinder,CRT,PILER-CR
ACTTAAAAACATCTTATGCTAAGTTTAGTCCTTAAATTAATGTCCGAAGTTTTAAATGTAAATATATTTAAGTACATCCCATGTTAAGGTTAATCAATGGTGATGAACAAATAGAAGGTTTTGATACTGATTTAAATACATCCCATGTTAAGGTTAATCTAGTATTTCGTGGGGTGCTTCTGGTCCTTCTATTGCATTTAAATACATCCCATGTTAAGGTTAATCTGATATAGCAGCAGATGGACAGGATTGGTGGACTGGATTTAAATACATCCCATGTTAAGGTTAATCCTATACTGCCATCCGCTCCAATGATTCCAAATAATTTAAATTCATCCCATGTTAAGGTTAATCCATAGCTAATCAGTTTACAATTTGCGATTTTGCTCATTTAAATACATCCCATGTTAAGGTTAATCTTTTCATAAATGGAGTGTATAATATAATGAGGGGGGAATTTAAATACATCCCATGTTAAGGTTAATCTAAATTTTCTTCAATGAAGAATACTCCATTAGTTATTTAAATACATCCCATGTTAAGGTTAATCAAAGACATTTGAGTTATAAATGTATGCCTAATGATAATTTAAATACATCCCATGTTAAGGTTAATCGTAATAATTTTGGCTGATAAAACTTTTAAAGTTATATTTAAATACATCCCATGTTAAGGTTAATCAAAGAACACCATCTCTTATTTTACCTAATACATCATTTAAATACATCCCATGTTAAGGTTAATCATAAAGCAAAATAATAGTGCTGCTTGGTTATCTACATTTAAATACATCCCATGTTAAGGTTAATCCGATCATGGCTATAACGATTGGATTTTAAATGAATCATTTAAATACATCCCATGTTAAGGTTAATCTAGTATTTCGTGGGGTGCTTCTGGTCCTTCTATTGCATTTAAATACATCCCATGTTAAGGTTAATCGTATCGATGTAGGCAGTTATGGAGTAAAGGAGTATATATTTAAATACATCCCATGTTAAGGTTAATCCTAAAGCAGATAGACCTAAACTAAATCAATTATTATTTAAATACATCCCATGTTAAGGTTAATCTAATCATCCAGAAGAATGGTACAGAGATTATATTCCATTTAAATACATCCCATGTTAAGGTTAATCAATGCAAGGTCTATTAAATAGGCGTAATGAAGAGTGATTTAAATACATCCCATGTTAAGGTTAATCCACAATCTCTCAACCTTTTAGCACGAGATTTCTTATTTAAATACATCCCATGTTAAGGTTAATCTGAATTGCCAGAAAGGAAATTGATATGAAAGAAATATTTAAATACATCCCATGTTAAGGTTAATCTACCATGCTTTATGAAAGGCTTATTGCCTGGCATTTCATTTAAATACATCCCATGTTAAGGTTAATCCAAGAAATGGCTTGGAATGGTTAGGAGGTGGAATAATTTAAATACATCCCATGTTAAGGTTAATCTAAGCTAGGAAATGGAATACAGGATATAGATATAACCTATTTAAATACATCCCATGTTAAGGTTAATCTATTAAATTTACTATCAAGTTTTCTGTACCTTTAGTATTTAAATACATCCCATGTTAAGGTTAATCAAGAAACTATTAATTAATAATAATTATTTGAACCATATTTAAATACATCCCATGTTAAGGTTAATCTTTTCAAACTAAAGTAGAAAACATTAAGTCCAACGGATTTAAATACATCCCATGTTAAGGTTAATCAAAACTTGATGTCTTCTAACAAATAATCTAGCTTCTATTTAAATACATCCCATGTTAAGGTTAATCACAAATGATTTTGGCGAGCAACATGCATATCCTAATTTAAATACATCCCATGTTAAGGTTAATCTATTTTTAATTACAAAGTAGCTTACTTGATAACCTATTTAAATACATCCCATGTTAAGGTTAATCTCCAAATTCTTTTATTGCATCCAATAGAGTTAATCATTTAAATACATCCCATGTTAAGGTTAATCTTTAATACATATAAGAAACTTTTTTAAAAAACTATATTTAAATACATCCCATGTTAAGGTTAATCTAGAGCTGGACATATTAAGAGTATATTTGAAGTGTGATTTAAATACATCCCATGTTAAGGTTAATCAATCATTATTTAATATTATTTCATATTTATTATTTTATTTAAATACATCCCATGTTAAGGTTAATCTTACAGATTATGCAGATAAAGAAGCTGTTTATACATTTAAATACATCCCATGTTAAGGTTAATCCTATAGTTATCGTCCATTTTATAAGGCAAATACAAGATTTAAATACATCCCATGTTAAGGTTAATCGAAACTGGTAGGTTAGAACATTGGCGTCAATTAGTATTTAAATACATCCCATGTTAAGGTTAATCATTTAAACTATATTATAACTGTAAATGACAATTGTTAATTTAAATACATCCCATGTTAAGGTTAATCCAACATATACATACAAGAAATATCTAATATAATACTATTTAAATACATCCCATGTTAAGGTTAATCTCGTACATATACAATATTTGAAAAGCACAACGAGTAATTTAAATACATCCCATGTTAAGGTTAATCAATGGCTTAACCATGCCATTAGTAGGCGTTTTCTTAATTTAAATACATCCCATGTTAAGGTTAATCACAGTTGGCGAACTTATCGAATACTTACAAAGTTTATTTAAATACATCCCATGTTAAGGTTAATCCTATAGTTATCGTCCATTTTATAAGGCAAATACAAGATTTAAATACATCCCATGTTAAGGTTAATCGAAACTGGTAGGTTAGAACATTGGCGTCAATTAGTATTTAAATACATCCCATGTTAAGGTTAATCATTTAAACTATATTATAACTGTAAATGACAATTGTTAATTTAAATACATCCCATGTTAAGGTTAATCCAACATATACATACAAGAAATATCTAATATAATACTATTTAAATACATCCCATGTTAAGGTTAATC

>CP025746|3|3|4098128-4101105|CRISPRCasFinder
ACTTAAAAACATCTTATGCTAAGTTTAGTC	CTTAAATTAATGTCCGAAGTTTTAAATGTAAATAT
ATTTAAGTACATCCCATGTTAAGGTTAATC	AATGGTGATGAACAAATAGAAGGTTTTGATACTG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGTATTTCGTGGGGTGCTTCTGGTCCTTCTATTGC
ATTTAAATACATCCCATGTTAAGGTTAATC	TGATATAGCAGCAGATGGACAGGATTGGTGGACTGG
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATACTGCCATCCGCTCCAATGATTCCAAATA
ATTTAAATTCATCCCATGTTAAGGTTAATC	CATAGCTAATCAGTTTACAATTTGCGATTTTGCTC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTCATAAATGGAGTGTATAATATAATGAGGGGGGA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAATTTTCTTCAATGAAGAATACTCCATTAGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAGACATTTGAGTTATAAATGTATGCCTAATGATA
ATTTAAATACATCCCATGTTAAGGTTAATC	GTAATAATTTTGGCTGATAAAACTTTTAAAGTTAT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAGAACACCATCTCTTATTTTACCTAATACATC
ATTTAAATACATCCCATGTTAAGGTTAATC	ATAAAGCAAAATAATAGTGCTGCTTGGTTATCTAC
ATTTAAATACATCCCATGTTAAGGTTAATC	CGATCATGGCTATAACGATTGGATTTTAAATGAATC
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGTATTTCGTGGGGTGCTTCTGGTCCTTCTATTGC
ATTTAAATACATCCCATGTTAAGGTTAATC	GTATCGATGTAGGCAGTTATGGAGTAAAGGAGTATAT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTAAAGCAGATAGACCTAAACTAAATCAATTATT
ATTTAAATACATCCCATGTTAAGGTTAATC	TAATCATCCAGAAGAATGGTACAGAGATTATATTCC
ATTTAAATACATCCCATGTTAAGGTTAATC	AATGCAAGGTCTATTAAATAGGCGTAATGAAGAGTG
ATTTAAATACATCCCATGTTAAGGTTAATC	CACAATCTCTCAACCTTTTAGCACGAGATTTCTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TGAATTGCCAGAAAGGAAATTGATATGAAAGAAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TACCATGCTTTATGAAAGGCTTATTGCCTGGCATTTC
ATTTAAATACATCCCATGTTAAGGTTAATC	CAAGAAATGGCTTGGAATGGTTAGGAGGTGGAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAGCTAGGAAATGGAATACAGGATATAGATATAACCT
ATTTAAATACATCCCATGTTAAGGTTAATC	TATTAAATTTACTATCAAGTTTTCTGTACCTTTAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAAACTATTAATTAATAATAATTATTTGAACCAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTCAAACTAAAGTAGAAAACATTAAGTCCAACGG
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAACTTGATGTCTTCTAACAAATAATCTAGCTTCT
ATTTAAATACATCCCATGTTAAGGTTAATC	ACAAATGATTTTGGCGAGCAACATGCATATCCTA
ATTTAAATACATCCCATGTTAAGGTTAATC	TATTTTTAATTACAAAGTAGCTTACTTGATAACCT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCCAAATTCTTTTATTGCATCCAATAGAGTTAATC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTAATACATATAAGAAACTTTTTTAAAAAACTAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGAGCTGGACATATTAAGAGTATATTTGAAGTGTG
ATTTAAATACATCCCATGTTAAGGTTAATC	AATCATTATTTAATATTATTTCATATTTATTATTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTACAGATTATGCAGATAAAGAAGCTGTTTATAC
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATAGTTATCGTCCATTTTATAAGGCAAATACAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	GAAACTGGTAGGTTAGAACATTGGCGTCAATTAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTTAAACTATATTATAACTGTAAATGACAATTGTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CAACATATACATACAAGAAATATCTAATATAATACT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCGTACATATACAATATTTGAAAAGCACAACGAGTA
ATTTAAATACATCCCATGTTAAGGTTAATC	AATGGCTTAACCATGCCATTAGTAGGCGTTTTCTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	ACAGTTGGCGAACTTATCGAATACTTACAAAGTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATAGTTATCGTCCATTTTATAAGGCAAATACAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	GAAACTGGTAGGTTAGAACATTGGCGTCAATTAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTTAAACTATATTATAACTGTAAATGACAATTGTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CAACATATACATACAAGAAATATCTAATATAATACT
ATTTAAATACATCCCATGTTAAGGTTAATC

>CP025746|3|1|4098128-4101105|CRT
ACTTAAAAACATCTTATGCTAAGTTTAGTC	CTTAAATTAATGTCCGAAGTTTTAAATGTAAATAT
ATTTAAGTACATCCCATGTTAAGGTTAATC	AATGGTGATGAACAAATAGAAGGTTTTGATACTG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGTATTTCGTGGGGTGCTTCTGGTCCTTCTATTGC
ATTTAAATACATCCCATGTTAAGGTTAATC	TGATATAGCAGCAGATGGACAGGATTGGTGGACTGG
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATACTGCCATCCGCTCCAATGATTCCAAATA
ATTTAAATTCATCCCATGTTAAGGTTAATC	CATAGCTAATCAGTTTACAATTTGCGATTTTGCTC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTCATAAATGGAGTGTATAATATAATGAGGGGGGA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAATTTTCTTCAATGAAGAATACTCCATTAGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAGACATTTGAGTTATAAATGTATGCCTAATGATA
ATTTAAATACATCCCATGTTAAGGTTAATC	GTAATAATTTTGGCTGATAAAACTTTTAAAGTTAT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAGAACACCATCTCTTATTTTACCTAATACATC
ATTTAAATACATCCCATGTTAAGGTTAATC	ATAAAGCAAAATAATAGTGCTGCTTGGTTATCTAC
ATTTAAATACATCCCATGTTAAGGTTAATC	CGATCATGGCTATAACGATTGGATTTTAAATGAATC
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGTATTTCGTGGGGTGCTTCTGGTCCTTCTATTGC
ATTTAAATACATCCCATGTTAAGGTTAATC	GTATCGATGTAGGCAGTTATGGAGTAAAGGAGTATAT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTAAAGCAGATAGACCTAAACTAAATCAATTATT
ATTTAAATACATCCCATGTTAAGGTTAATC	TAATCATCCAGAAGAATGGTACAGAGATTATATTCC
ATTTAAATACATCCCATGTTAAGGTTAATC	AATGCAAGGTCTATTAAATAGGCGTAATGAAGAGTG
ATTTAAATACATCCCATGTTAAGGTTAATC	CACAATCTCTCAACCTTTTAGCACGAGATTTCTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TGAATTGCCAGAAAGGAAATTGATATGAAAGAAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TACCATGCTTTATGAAAGGCTTATTGCCTGGCATTTC
ATTTAAATACATCCCATGTTAAGGTTAATC	CAAGAAATGGCTTGGAATGGTTAGGAGGTGGAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAGCTAGGAAATGGAATACAGGATATAGATATAACCT
ATTTAAATACATCCCATGTTAAGGTTAATC	TATTAAATTTACTATCAAGTTTTCTGTACCTTTAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAAACTATTAATTAATAATAATTATTTGAACCAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTCAAACTAAAGTAGAAAACATTAAGTCCAACGG
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAACTTGATGTCTTCTAACAAATAATCTAGCTTCT
ATTTAAATACATCCCATGTTAAGGTTAATC	ACAAATGATTTTGGCGAGCAACATGCATATCCTA
ATTTAAATACATCCCATGTTAAGGTTAATC	TATTTTTAATTACAAAGTAGCTTACTTGATAACCT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCCAAATTCTTTTATTGCATCCAATAGAGTTAATC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTAATACATATAAGAAACTTTTTTAAAAAACTAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGAGCTGGACATATTAAGAGTATATTTGAAGTGTG
ATTTAAATACATCCCATGTTAAGGTTAATC	AATCATTATTTAATATTATTTCATATTTATTATTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTACAGATTATGCAGATAAAGAAGCTGTTTATAC
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATAGTTATCGTCCATTTTATAAGGCAAATACAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	GAAACTGGTAGGTTAGAACATTGGCGTCAATTAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTTAAACTATATTATAACTGTAAATGACAATTGTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CAACATATACATACAAGAAATATCTAATATAATACT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCGTACATATACAATATTTGAAAAGCACAACGAGTA
ATTTAAATACATCCCATGTTAAGGTTAATC	AATGGCTTAACCATGCCATTAGTAGGCGTTTTCTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	ACAGTTGGCGAACTTATCGAATACTTACAAAGTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATAGTTATCGTCCATTTTATAAGGCAAATACAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	GAAACTGGTAGGTTAGAACATTGGCGTCAATTAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTTAAACTATATTATAACTGTAAATGACAATTGTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CAACATATACATACAAGAAATATCTAATATAATACT
ATTTAAATACATCCCATGTTAAGGTTAATC

>CP025746|3|1|4098193-4101105|PILER-CR
ATTTAAGTACATCCCATGTTAAGGTTAATC	AATGGTGATGAACAAATAGAAGGTTTTGATACTG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGTATTTCGTGGGGTGCTTCTGGTCCTTCTATTGC
ATTTAAATACATCCCATGTTAAGGTTAATC	TGATATAGCAGCAGATGGACAGGATTGGTGGACTGG
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATACTGCCATCCGCTCCAATGATTCCAAATA
ATTTAAATTCATCCCATGTTAAGGTTAATC	CATAGCTAATCAGTTTACAATTTGCGATTTTGCTC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTCATAAATGGAGTGTATAATATAATGAGGGGGGA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAATTTTCTTCAATGAAGAATACTCCATTAGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAGACATTTGAGTTATAAATGTATGCCTAATGATA
ATTTAAATACATCCCATGTTAAGGTTAATC	GTAATAATTTTGGCTGATAAAACTTTTAAAGTTAT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAGAACACCATCTCTTATTTTACCTAATACATC
ATTTAAATACATCCCATGTTAAGGTTAATC	ATAAAGCAAAATAATAGTGCTGCTTGGTTATCTAC
ATTTAAATACATCCCATGTTAAGGTTAATC	CGATCATGGCTATAACGATTGGATTTTAAATGAATC
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGTATTTCGTGGGGTGCTTCTGGTCCTTCTATTGC
ATTTAAATACATCCCATGTTAAGGTTAATC	GTATCGATGTAGGCAGTTATGGAGTAAAGGAGTATAT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTAAAGCAGATAGACCTAAACTAAATCAATTATT
ATTTAAATACATCCCATGTTAAGGTTAATC	TAATCATCCAGAAGAATGGTACAGAGATTATATTCC
ATTTAAATACATCCCATGTTAAGGTTAATC	AATGCAAGGTCTATTAAATAGGCGTAATGAAGAGTG
ATTTAAATACATCCCATGTTAAGGTTAATC	CACAATCTCTCAACCTTTTAGCACGAGATTTCTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TGAATTGCCAGAAAGGAAATTGATATGAAAGAAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TACCATGCTTTATGAAAGGCTTATTGCCTGGCATTTC
ATTTAAATACATCCCATGTTAAGGTTAATC	CAAGAAATGGCTTGGAATGGTTAGGAGGTGGAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAGCTAGGAAATGGAATACAGGATATAGATATAACCT
ATTTAAATACATCCCATGTTAAGGTTAATC	TATTAAATTTACTATCAAGTTTTCTGTACCTTTAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAAACTATTAATTAATAATAATTATTTGAACCAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTCAAACTAAAGTAGAAAACATTAAGTCCAACGG
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAACTTGATGTCTTCTAACAAATAATCTAGCTTCT
ATTTAAATACATCCCATGTTAAGGTTAATC	ACAAATGATTTTGGCGAGCAACATGCATATCCTA
ATTTAAATACATCCCATGTTAAGGTTAATC	TATTTTTAATTACAAAGTAGCTTACTTGATAACCT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCCAAATTCTTTTATTGCATCCAATAGAGTTAATC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTAATACATATAAGAAACTTTTTTAAAAAACTAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGAGCTGGACATATTAAGAGTATATTTGAAGTGTG
ATTTAAATACATCCCATGTTAAGGTTAATC	AATCATTATTTAATATTATTTCATATTTATTATTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTACAGATTATGCAGATAAAGAAGCTGTTTATAC
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATAGTTATCGTCCATTTTATAAGGCAAATACAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	GAAACTGGTAGGTTAGAACATTGGCGTCAATTAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTTAAACTATATTATAACTGTAAATGACAATTGTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CAACATATACATACAAGAAATATCTAATATAATACT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCGTACATATACAATATTTGAAAAGCACAACGAGTA
ATTTAAATACATCCCATGTTAAGGTTAATC	AATGGCTTAACCATGCCATTAGTAGGCGTTTTCTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	ACAGTTGGCGAACTTATCGAATACTTACAAAGTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATAGTTATCGTCCATTTTATAAGGCAAATACAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	GAAACTGGTAGGTTAGAACATTGGCGTCAATTAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTTAAACTATATTATAACTGTAAATGACAATTGTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CAACATATACATACAAGAAATATCTAATATAATACT
ATTTAAATACATCCCATGTTAAGGTTAATC

Protein	Signature genes	Signature genes Name	Protein_function
CP025746.1\|QAA33481.1\|4086991_4087567_-\|DNA-helicase-II	unknown	unknown	gnl\|CDD\|214936
CP025746.1\|QAA33497.1\|4110175_4111126_-\|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
CP025746.1\|QAA33485.1\|4093904_4094783_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
CP025746.1\|QAA33478.1\|4082955_4084242_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
CP025746.1\|QAA33487.1\|4095734_4097012_+\|cell-division-protein	unknown	unknown	gnl\|CDD\|223540
CP025746.1\|QAA33489.1\|4101901_4102243_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226950
CP025746.1\|QAA33479.1\|4084831_4085485_-\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33496.1\|4109428_4110172_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
CP025746.1\|QAA33495.1\|4106829_4109385_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|350688
CP025746.1\|QAA33486.1\|4094823_4095705_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
CP025746.1\|QAA33480.1\|4085877_4086927_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|372641
CP025746.1\|QAA33494.1\|4106335_4106830_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP025746.1\|QAA33482.1\|4088214_4088820_-\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33484.1\|4090978_4091863_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP025746.1\|QAA33493.1\|4105327_4106326_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
CP025746.1\|QAA33492.1\|4105037_4105328_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP025746.1\|QAA33483.1\|4089595_4090870_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|376374
CP025746.1\|QAA33491.1\|4103475_4103922_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33490.1\|4102269_4102707_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33488.1\|4101242_4101905_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226950

Protein	Function_ID	Function_description	E-value
CP025746.1\|QAA33481.1\|4086991_4087567_-\|DNA-helicase-II	gnl\|CDD\|214936	smart00956, RQC, This DNA-binding domain is found in the RecQ helicase among others and has a helix-turn-helix structure. The RQC domain, found only in RecQ family enzymes, is a high affinity G4 DNA binding domain.	1.16082e-10
CP025746.1\|QAA33485.1\|4093904_4094783_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.76774e-11
CP025746.1\|QAA33489.1\|4101901_4102243_+\|hypothetical-protein	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000384121
CP025746.1\|QAA33487.1\|4095734_4097012_+\|cell-division-protein	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	1.702e-69
CP025746.1\|QAA33492.1\|4105037_4105328_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.10253e-23
CP025746.1\|QAA33496.1\|4109428_4110172_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.75161e-58
CP025746.1\|QAA33486.1\|4094823_4095705_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.00431e-15
CP025746.1\|QAA33480.1\|4085877_4086927_-\|hypothetical-protein	gnl\|CDD\|372641	pfam13589, HATPase_c_3, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase. This family represents, additionally, the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90.	0.00102144
CP025746.1\|QAA33494.1\|4106335_4106830_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.13084e-55
CP025746.1\|QAA33478.1\|4082955_4084242_-\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.22891e-06
CP025746.1\|QAA33484.1\|4090978_4091863_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.15e-49
CP025746.1\|QAA33497.1\|4110175_4111126_-\|CRISPR-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.30926e-48
CP025746.1\|QAA33483.1\|4089595_4090870_-\|adenylosuccinate-synthase	gnl\|CDD\|376374	pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.	0
CP025746.1\|QAA33495.1\|4106829_4109385_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.61272e-30
CP025746.1\|QAA33493.1\|4105327_4106326_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	9.53705e-158
CP025746.1\|QAA33488.1\|4101242_4101905_+\|hypothetical-protein	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.99789e-10

>CP025746.1|QAA33487.1|4095734_4097012_+|cell-division-protein
MDKIELLRGLVKENPQSSNAWYLLGSEYSEVGNYSEALKAFSEALKYCDDKTKGMVINELTKLSNAENLNKLQPEASTKVNSDETFETKPSAQNIADNIEESNETENIASEEEYNNVIPLRVIEGGKNYAVLDEKEENIKVTFNDVGGLDDLKETIKMKIIKPFVSPGLFDRFKKKVGGGILLFGPPGCGKTFMAKATAGECNANFIPVHITDILNPYLGQSALNVKDIFETARAKKPCVMFFDEIDTIGFNRSKLSSEHMRPVIDQLLTEIEGIDSSTQKLLIIGATNMPWDVDSAFKRPGRFDKTVFVPPPDQKAREAIFKLKLKDRPMEIIDYITLSKLTPLYSGADIENVVEVATENVIEEIMRTGIERPIGMNDLNTAIQMTKPSTLEWLRTIKNYIKYSNQSGLYDEVDKFINANKKLL
>CP025746.1|QAA33486.1|4094823_4095705_+|hypothetical-protein
MENENFKKSLYEVETYINMGRYDQAVNKLEPLISLDPNNGRMLYYLALCYYNLDIDEEAIELCQQSLSNGFSAEDCHFLLGCIYRELAKYKEAAEHYSECLRINPKNARALSSYGTVMLKTGNDKKALQLISEALQIAPSDDIVLRHMFVYNMSKGRKRHQLNSLQKYLNSENNEVSKLTHIGVFNMHNKNYPLARENFRQAFLLDPTNPNVLRLLEEMDILTNWFFLPHRLIQKAGGAVVVYLGFVIIFILTMNIKGATIHWILIITYLTFVLYTYLSLFVYRLIKKSKRKA
>CP025746.1|QAA33485.1|4093904_4094783_+|hypothetical-protein
MLTDDTKLKNQVDIYISMRKYNQAIDVLKEMLSNNPNNCRYLYLMGFCHHMIDKDEAALMYCYESLKNDSTGDSHYLLGIIYKKLSELDKSKEHYLECLRINPLEASALSSLALIMLEAGNKKEALKYLKKAEEIDPLDITVLRDIFEFHTTRKNKKYQKEALQKFLENSQNEFDKLVALGVYNLSNNRFLKARDYFRQAYVLNPTDKTMLGFLEKSSRPSQWLLIPLIPLAKTKRPGIVLLMGLVALMIIANTPIIKGAFTILYYSYISYIVYIAFVGLLLDFIEKHIRKK
>CP025746.1|QAA33484.1|4090978_4091863_-|LysR-family-transcriptional-regulator
MMINFEYYKIFYYVAKLKSITRAAEELYITQPAVSQVIKQLENTLGGNLFYRTSKGVRLTPEGEVLYTYISRGYEFMALGESKFKELLTLEAGEIRIGASDMTLQYYLLPFLEEFHKLYPKVKVKVTNLPTPETLEYLRQGKIDFGVVSQPVKEYEGVKITSVSNIRDIFIANDSFKELKNRSIELKELENYPIICLENGTSTRKYVDDFLAGEKATLNIEFELANSDLIVEFTRRSLGIGCVVQNFAEELIEKGSVFEINLKKPIPKRSICIITQDKVPISPSGKRLLDLLMS
>CP025746.1|QAA33483.1|4089595_4090870_-|adenylosuccinate-synthase
MVKAIVGGNWGDEGKGKITDMLAEKSDIVVRFQGGANAGHTIINNYGKFALHILPSGVFRKKVTNVIAQGVALNIEEFFKELDSLLERSVPMPEIKISDRAQIVMPYHILLDELEEERLGAKSFGSTKSGIAPFYSDKYLKIGIQVCDLFDDEILMNKINLNCDQKNVLLKSLYKGKTLDSNIIYNKLIGYRERLEPMVCDAALLLNNAIKQGKEILLEGQLGALKDPDNGIYPFTTSSSPLAGFGAVGAGIPPYEIKEIVTVVKAYSSAVGAGAFVSEIFDKEADTLRNLGGDCGEYGATTGRPRRMGWFDAVATRYGCMLQGTTEIALSLIDVLGYLDKIPVCIGYDINGTETKDFPVTPLLNKARPIYTYLDGWKCDITGIRNYEDLPEKARLYIEFIEAQVGYPIKYISNGPRREDIIFR
>CP025746.1|QAA33482.1|4088214_4088820_-|hypothetical-protein
MPSVSIMFLIFLLVLTIIIWVLVKRKLPRIKNYKIVAIIVLIISFILSSFYLYLKVSSGIIYAKTTNLSEECIGELRLFENIDDKEFQGKYMINAKKMDNALFDYYKLGNGLLIATNESRKIIRIEIDDKSAAGMKTSKGIGLGSSVDEVVKIYGENYYKRMDDMGIPVIGYIDRKRKVKLEFFYYQGKVTMIRYDISSMK
>CP025746.1|QAA33481.1|4086991_4087567_-|DNA-helicase-II
MSRRAKVHYELNDVRKVSEPSEEDIKKILRAADDIITLAGRNMLAKILKGSRDKKLLEKELDKSPSYGYYKELKIEEITTIIDWMIVNDYLNIDYFGRLPMIIFSPKGWDYFKPVYVEELYYLITLVDLDDCEELIERMKNTNRQVVKMLLAKIGESRNISFIRFLRKWEIEEVKKVRIMINGTINKLKSV
>CP025746.1|QAA33480.1|4085877_4086927_-|hypothetical-protein
MANFNRVIVDKNFLRKKLVEDEEIAKSLSRFVDNSIIARRGVTTGDNPCKVSIKISSDEITISDNSGGIQSKISDKDIFRIGIEDGQGIKGLGIKKSFFKLGNKIEIFSNKKRCSRKFALDINLGSEELASQSENIAYNPKEIEGTTIIITDLEKTLLKELGSNYFYEKVFKNLGRIYSKFLSKGELVLLVNDKEVEPVEIEARKINSCKILGHYEVTLYKGTKEDASGIDLYINDFIVLDRIKNKEVKWNLLNESKYTYTDCIVEISYQGERSKYEKEKDILFAEVIKFIKENKVYFLNSTIIIQYSMPISKVEELKEYYEEDTAKAIGMKGFDKLYEDYLNNKANNN
>CP025746.1|QAA33479.1|4084831_4085485_-|hypothetical-protein
MKKLRLCPLVLVLFLTACSSNSTGSNTSKQTPDTQANNTTSASTNNSDSNNNASSTNNSSEANKNNQNTAKNNSDSSSKKTTTPSSTAQVKSYTDQEITEKTKNYILNGQGNKAEAEKLNWSKTFLEKVNIPSLYKKYVTNGGKKDDVASFAAYMTKNAPIQNNWQDLFKKDLQDTYGEKVARIEHLQGDSYQAYVQKEGKEVPFVVVSARTGYFHG
>CP025746.1|QAA33478.1|4082955_4084242_-|hypothetical-protein
MEFYSPSEKIRLMRKKFRVNQAELEGINMTRAFISMMESGKRTVSKASSKALAEKFNEIAKRISVNLNLDDEYFSRKPEEDARLYCEEQLANGESLSYKKLDELMAITKKFNLVDILARVYEVNGKKYVKEQNDVNAFINFSNALGKYKELRDDKAQGSVYNNLGNCKLRKKEYDEAIFYYKQAIELGATEKDSVIYIKASLNLALCYNEKKDYKKGLDLIDNNVLRNEEEVNIKIINEAKLTRAIILNSLNRGEEAVKEYFSLIDRIKDTDDILLAYVYNNLSDYYYNIGDYSKSLHYISQAQRIKSLVDKRTLPNTLNTKGKIFLRQGMYEESIMLFQLAIDIALEHKQFNMVLENYKELVNVYEYEQEWEKIREITKAFLENIESNHVELGKKYALYKLTEVSLRLGDNEEAVNTLKKLDSLLID
>CP025746.1|QAA33488.1|4101242_4101905_+|hypothetical-protein
MKDVKDWITIKRMYERGVPIRQIAKELKVSRNTVKRLIKLDEEPKYKKRKYSTKIDHFHEDIKRWYLEPEYNFIGTRIFRELKQLGYNGSISPLYRYLNSLKEEKRSLPLKATKRIETPLGDQAQFDWAEYLMWVGGEKIKVYCYSLILAASRKKAIIFAKSCDGEAIYESIHLLFKRIGGVTKELLIDNPKALVVSNHPEEEVNFNINALRLAHHLEFH
>CP025746.1|QAA33489.1|4101901_4102243_+|hypothetical-protein
MNACNPYRPRTKGKIEKPFQYIEEQFVKGNKFDSMTHLNKAAEAFIEDSNNLKHGTTLRITNEYFTEEIPYLAPVKDKPFIITDLKERKVSLDSFISVDAVKYSVPIEYVGKK
>CP025746.1|QAA33490.1|4102269_4102707_+|hypothetical-protein
MEVYNSALDIIATHEIITQKGKMVTVDDHYGALNNIAPKSIPEIVRQFESTFPSGSLFYKNCIAHLNQPSYHLRKIIKLKELYDNDSLESLLRYCIEENIYNINDIKNILKTKYLDIVKGISAKDELLTLSETSRELSYYEEGQF
>CP025746.1|QAA33491.1|4103475_4103922_+|hypothetical-protein
MKRKHDHRDLDYMKFIEIFNTEGRKSARDYVKEHIPFNYDYFIKLVKRYTGYQYNKESKKFELLKATESQFMSIDDLLNKPKDNATSIVASIPKAIYYKDPLDELNLDLLQDRLIELSKYIKIKSSTKSIEINLIRLREGGYDIELIS
>CP025746.1|QAA33492.1|4105037_4105328_-|CRISPR-associated-endonuclease-Cas2
MSKINNYNYAFVFYDVNEKRVQRVFKVCKKYLSHFQKSVFRGEMSPSKLISFKKDLNKVIDKNEDFICIIKMMNDNVFGEEVLGVSSNSTGEDLII
>CP025746.1|QAA33493.1|4105327_4106326_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MGSTRYITSMGELTRKDNSLCFRKDGKNVYIPIENTKEIYCLNEVSVNTKLLDFLSQNNIIVHFFNYYEGYSGTFYPKNQYNSGRLLVAQVNKFNDDRLTIAKAIVKGIGINIREVLYHYYKHNKKEVKGTIDWIKDDFFTRVESSENIKELMAAEGEAWQRFYSEFKVFLPEDFMMNKRVKRPPDNPINALISFGNTLLYTKTISAIYRTHLDQRISYLHEPSEGRFSLSLDVSEVFKPVIVYKTIFDLVNNKKLQVNKHFDKKVNYCLLNEEGKNVFITAFEERMDSVFEHPKLKRKVSYRTAIKLDCYKLIKFIMEDKPFAPFSLKEGM
>CP025746.1|QAA33494.1|4106335_4106830_-|CRISPR-associated-protein-Cas4
MKINGTLINYYFHCKRQCYLHGNRLNLEDNSEIVKIGKAIHEERSEGRENTEISIDNIKLDKLTSEYLTEVKKSDADIEAAKWQLIYYLKVLRTKGIDRKGKLEFVEKNKSDKKILLFQLDEKLEEELENYVNEIERLILSENTPPVLNSSKCKKCAYYEYCYI
>CP025746.1|QAA33495.1|4106829_4109385_-|CRISPR-associated-helicase/endonuclease-Cas3
MYFKREYNVDLSNLINNKVPFYAHKKTGKQETLQEHTNLCAKYFKRIITSRNLESIFLNFEKLCLKDISEEGKELFRELLINTVLFHDIGKINPIFQKKNMENNIRGSEKFSQIGSKHSIISSVLYIDYYIKRVTNLPKSDVNEIILFLYLNAYVISKHHGDLDVFYKFLKLFDEDEDGYNVIEILKDNGKTVYNHDLNINRNMAKKICELVKISLVKNTEDSNGIYIYIYEKLIFSLLVAADFYSTTEFMNDVELEEFGDIRGIEEFYDIYKCTGIYKVIRQYEQKQYNEKKNLGNEKNINILRTEMFLDAEKELEKNIENNIFFLEAPTGSGKSNVSMNLSFKLLEQNNNLRKIYYVYPFNTLVEQNLQSLKKIFGYHKEIFNKISVINSISPIKLDEVKKKGKYEEDDYNYYAKALLNRQFLNYPMILTTHVSIFKTMFNASKESAFAFHQLANSVIVLDEIQSYKNIIWTEIITFLKAFAKLLNIKVIIMSATLPDLNLLIGSIEGTTNLILNRDKYFSNPLFRDRVKVDYELMNSSEVMEDLYEHVKKNSFLGKKVLIEFIKKDSAYSFFRRLKSDEDISCRIELMTGDDNSIERERILDEVKNDGGLILVATQVIEAGVDIDMDIGYKDISKLDSDEQFLGRINRSCTKTGIVHFFNLDDTKSIYSNDVRVNNSLSLIDESMKRVLLNKDFGEYYKKVLEAIIKIYNESFSDSNIKEFFNEAVEKFNFKKVEERMKLIDDNSWSMSVFLSSVIERSDGTIINGNEVWEEYRRLLQNSSMDYAENKVKLSEVRSKMNYFIYEIKKNDNFIYNERLGELYFIENGEDYFEDGKLNKEKFISGVGVFI
>CP025746.1|QAA33496.1|4109428_4110172_-|type-I-B-CRISPR-associated-protein-Cas5
MKVLKFTLYGNTAFFKKPEVNSYLYFTYGNIHKVALLGIFGAILGYGGYNQQKSGVYPEFYEKLKDIQLSIVPNNPKGFIPKKVQIFNNSVGYASKELGGNLIVKEQWLENPSWDIYLLVQDDESRKISEYIINKKAIYAPYLGKNDHYANITNVKVIDNVNEVQEIDRIDSLCLKDCFEFNIPTEDAYNLEATYVDYYKYEEQLPYGLDKDNNMYMLKPFVFTNMNANLTEEIKVYKVEEKNIVFY
>CP025746.1|QAA33497.1|4110175_4111126_-|CRISPR-associated-protein
MNKRVYGVIGISSIMANWNADFTGYPKTTSSGDTFGSDKALKYPMKKMWENNGEKVLYIKSMKFSKDKKGEVQLVPRALKERYEYIFGVEDLKKCKSAEEVLKNLFSAIDVKNFGATFAEEGNNISITGAVQIGQGFNKYDGTNPEEQQILSPFRDGSKDSVKPDSEEAKNSTLGTKIVSNEAHYFYPFTINPLTYKEYKELGVTEGYTEEDYIKFKETAVVSATSFATNSKVGCENEFALFVETEENLYLPNLSEYIDFTKGKDKNTIAIKCSELLNSVGDRIKNVEIYYNPYTTIIESEIKGAKQFNIFTQKEV

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Crispr_ID: CP025746_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025746_4

4103989-4104860

TypeI-B

II-B

Consensus_repeat	Method
ATTTAAATACATCCCATGTTAAGGTTAATC	PILER-CR
ATTTAAATACATCCCATGTTAAGGTTAATC	CRISPRCasFinder
ATTTAAATACATCCCATGTTAAGGTTAATC	CRT

13 spacers

cas2,cas1,cas4,cas3,cas5,cas7b,cas8b1,cas6

The CRISPR arrays of CP025746_4

>merge|CP025746|4|4103989-4104860|PILER-CR,CRISPRCasFinder,CRT
ATTTAAATACATCCCATGTTAAGGTTAATCAATGGCTTAACCATGCCATTAGTAGGCGTTTTCTTAATTTAAATACATCCCATGTTAAGGTTAATCTAAAAAAAAGATAGCATATAGCTATCTTACTTGATTTAAATACATCCCATGTTAAGGTTAATCATCCTATTAAGTATTTTAGTGATAAGTGTTTGATATTTAAATACATCCCATGTTAAGGTTAATCAAACACCTTGAACCCAAGCATACTTAGCAGTAAATAATTTAAATACATCCCATGTTAAGGTTAATCAATTTAGGAGTACCGATTAAATCAATAGACTATGTATTTAAATACATCCCATGTTAAGGTTAATCTCTTTAGTTGTTTTTCTATTTCTCTTTGGTGTGCATTTAAATACATCCCATGTTAAGGTTAATCTTTATGCTTGGTCTCTTTTTTAGTTTTAGCTGTGGGATTTAAATACATCCCATGTTAAGGTTAATCTAGACAATCTTATTTTAGAGAATAAGCTAGGAAATTTAAATACATCCCATGTTAAGGTTAATCTACGAAAATCCAGAGCTTTTAGAAGGTGTTAATTAATTTAAATACATCCCATGTTAAGGTTAATCAAAAGTATAAGGAGAATATTGAAAGGGCAAGGAGATTTAAATACATCCCATGTTAAGGTTAATCCGCTTATGTTTTGATTTTCGTGTCGTATTCTTTTAATTTAAATACATCCCATGTTAAGGTTAATCCTATAGGAGAAGTACCACGTATAAGCCATAAAACCATTTAAATACATCCCATGTTAAGGTTAATCATTTTTCCGTATCAAATGTAAGTTGCAAATCATCAAATTTAAATACATCCCATGTTAAGGTTAATC

>CP025746|4|2|4103989-4104860|PILER-CR
ATTTAAATACATCCCATGTTAAGGTTAATC	AATGGCTTAACCATGCCATTAGTAGGCGTTTTCTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAAAAAAAGATAGCATATAGCTATCTTACTTG
ATTTAAATACATCCCATGTTAAGGTTAATC	ATCCTATTAAGTATTTTAGTGATAAGTGTTTGAT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAACACCTTGAACCCAAGCATACTTAGCAGTAAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	AATTTAGGAGTACCGATTAAATCAATAGACTATGT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCTTTAGTTGTTTTTCTATTTCTCTTTGGTGTGC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTATGCTTGGTCTCTTTTTTAGTTTTAGCTGTGGG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGACAATCTTATTTTAGAGAATAAGCTAGGAA
ATTTAAATACATCCCATGTTAAGGTTAATC	TACGAAAATCCAGAGCTTTTAGAAGGTGTTAATTA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAAGTATAAGGAGAATATTGAAAGGGCAAGGAG
ATTTAAATACATCCCATGTTAAGGTTAATC	CGCTTATGTTTTGATTTTCGTGTCGTATTCTTTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATAGGAGAAGTACCACGTATAAGCCATAAAACC
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTTTTCCGTATCAAATGTAAGTTGCAAATCATCAA
ATTTAAATACATCCCATGTTAAGGTTAATC

>CP025746|4|4|4103989-4104860|CRISPRCasFinder
ATTTAAATACATCCCATGTTAAGGTTAATC	AATGGCTTAACCATGCCATTAGTAGGCGTTTTCTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAAAAAAAGATAGCATATAGCTATCTTACTTG
ATTTAAATACATCCCATGTTAAGGTTAATC	ATCCTATTAAGTATTTTAGTGATAAGTGTTTGAT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAACACCTTGAACCCAAGCATACTTAGCAGTAAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	AATTTAGGAGTACCGATTAAATCAATAGACTATGT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCTTTAGTTGTTTTTCTATTTCTCTTTGGTGTGC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTATGCTTGGTCTCTTTTTTAGTTTTAGCTGTGGG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGACAATCTTATTTTAGAGAATAAGCTAGGAA
ATTTAAATACATCCCATGTTAAGGTTAATC	TACGAAAATCCAGAGCTTTTAGAAGGTGTTAATTA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAAGTATAAGGAGAATATTGAAAGGGCAAGGAG
ATTTAAATACATCCCATGTTAAGGTTAATC	CGCTTATGTTTTGATTTTCGTGTCGTATTCTTTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATAGGAGAAGTACCACGTATAAGCCATAAAACC
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTTTTCCGTATCAAATGTAAGTTGCAAATCATCAA
ATTTAAATACATCCCATGTTAAGGTTAATC

>CP025746|4|2|4103989-4104860|CRT
ATTTAAATACATCCCATGTTAAGGTTAATC	AATGGCTTAACCATGCCATTAGTAGGCGTTTTCTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAAAAAAAGATAGCATATAGCTATCTTACTTG
ATTTAAATACATCCCATGTTAAGGTTAATC	ATCCTATTAAGTATTTTAGTGATAAGTGTTTGAT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAACACCTTGAACCCAAGCATACTTAGCAGTAAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	AATTTAGGAGTACCGATTAAATCAATAGACTATGT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCTTTAGTTGTTTTTCTATTTCTCTTTGGTGTGC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTATGCTTGGTCTCTTTTTTAGTTTTAGCTGTGGG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGACAATCTTATTTTAGAGAATAAGCTAGGAA
ATTTAAATACATCCCATGTTAAGGTTAATC	TACGAAAATCCAGAGCTTTTAGAAGGTGTTAATTA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAAGTATAAGGAGAATATTGAAAGGGCAAGGAG
ATTTAAATACATCCCATGTTAAGGTTAATC	CGCTTATGTTTTGATTTTCGTGTCGTATTCTTTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATAGGAGAAGTACCACGTATAAGCCATAAAACC
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTTTTCCGTATCAAATGTAAGTTGCAAATCATCAA
ATTTAAATACATCCCATGTTAAGGTTAATC

Protein	Signature genes	Signature genes Name	Protein_function
CP025746.1\|QAA33499.1\|4112893_4113586_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP025746.1\|QAA33485.1\|4093904_4094783_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
CP025746.1\|QAA33487.1\|4095734_4097012_+\|cell-division-protein	unknown	unknown	gnl\|CDD\|223540
CP025746.1\|QAA33492.1\|4105037_4105328_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP025746.1\|QAA33496.1\|4109428_4110172_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
CP025746.1\|QAA33498.1\|4111118_4112879_-\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
CP025746.1\|QAA33495.1\|4106829_4109385_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|350688
CP025746.1\|QAA33486.1\|4094823_4095705_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
CP025746.1\|QAA33500.1\|4113972_4114104_-\|endoribonuclease-L-PSP	unknown	unknown	unknown
CP025746.1\|QAA33494.1\|4106335_4106830_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP025746.1\|QAA33482.1\|4088214_4088820_-\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33489.1\|4101901_4102243_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226950
CP025746.1\|QAA33491.1\|4103475_4103922_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33493.1\|4105327_4106326_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
CP025746.1\|QAA33501.1\|4116291_4116534_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316753
CP025746.1\|QAA33497.1\|4110175_4111126_-\|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
CP025746.1\|QAA33483.1\|4089595_4090870_-\|adenylosuccinate-synthase	unknown	unknown	gnl\|CDD\|376374
CP025746.1\|QAA33484.1\|4090978_4091863_-\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|223656
CP025746.1\|QAA33490.1\|4102269_4102707_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33488.1\|4101242_4101905_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226950

Protein	Function_ID	Function_description	E-value
CP025746.1\|QAA33485.1\|4093904_4094783_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	5.76774e-11
CP025746.1\|QAA33499.1\|4112893_4113586_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.95477e-16
CP025746.1\|QAA33494.1\|4106335_4106830_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.13084e-55
CP025746.1\|QAA33487.1\|4095734_4097012_+\|cell-division-protein	gnl\|CDD\|223540	COG0464, SpoVK, ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones].	1.702e-69
CP025746.1\|QAA33492.1\|4105037_4105328_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.10253e-23
CP025746.1\|QAA33496.1\|4109428_4110172_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.75161e-58
CP025746.1\|QAA33498.1\|4111118_4112879_-\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	1.08712e-21
CP025746.1\|QAA33486.1\|4094823_4095705_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	2.00431e-15
CP025746.1\|QAA33489.1\|4101901_4102243_+\|hypothetical-protein	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	0.000384121
CP025746.1\|QAA33484.1\|4090978_4091863_-\|LysR-family-transcriptional-regulator	gnl\|CDD\|223656	COG0583, LysR, Transcriptional regulator [Transcription].	8.15e-49
CP025746.1\|QAA33501.1\|4116291_4116534_-\|hypothetical-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	3.89521e-05
CP025746.1\|QAA33497.1\|4110175_4111126_-\|CRISPR-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.30926e-48
CP025746.1\|QAA33483.1\|4089595_4090870_-\|adenylosuccinate-synthase	gnl\|CDD\|376374	pfam00709, Adenylsucc_synt, Adenylosuccinate synthetase.	0
CP025746.1\|QAA33495.1\|4106829_4109385_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.61272e-30
CP025746.1\|QAA33493.1\|4105327_4106326_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	9.53705e-158
CP025746.1\|QAA33488.1\|4101242_4101905_+\|hypothetical-protein	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.99789e-10

>CP025746.1|QAA33491.1|4103475_4103922_+|hypothetical-protein
MKRKHDHRDLDYMKFIEIFNTEGRKSARDYVKEHIPFNYDYFIKLVKRYTGYQYNKESKKFELLKATESQFMSIDDLLNKPKDNATSIVASIPKAIYYKDPLDELNLDLLQDRLIELSKYIKIKSSTKSIEINLIRLREGGYDIELIS
>CP025746.1|QAA33490.1|4102269_4102707_+|hypothetical-protein
MEVYNSALDIIATHEIITQKGKMVTVDDHYGALNNIAPKSIPEIVRQFESTFPSGSLFYKNCIAHLNQPSYHLRKIIKLKELYDNDSLESLLRYCIEENIYNINDIKNILKTKYLDIVKGISAKDELLTLSETSRELSYYEEGQF
>CP025746.1|QAA33489.1|4101901_4102243_+|hypothetical-protein
MNACNPYRPRTKGKIEKPFQYIEEQFVKGNKFDSMTHLNKAAEAFIEDSNNLKHGTTLRITNEYFTEEIPYLAPVKDKPFIITDLKERKVSLDSFISVDAVKYSVPIEYVGKK
>CP025746.1|QAA33488.1|4101242_4101905_+|hypothetical-protein
MKDVKDWITIKRMYERGVPIRQIAKELKVSRNTVKRLIKLDEEPKYKKRKYSTKIDHFHEDIKRWYLEPEYNFIGTRIFRELKQLGYNGSISPLYRYLNSLKEEKRSLPLKATKRIETPLGDQAQFDWAEYLMWVGGEKIKVYCYSLILAASRKKAIIFAKSCDGEAIYESIHLLFKRIGGVTKELLIDNPKALVVSNHPEEEVNFNINALRLAHHLEFH
>CP025746.1|QAA33487.1|4095734_4097012_+|cell-division-protein
MDKIELLRGLVKENPQSSNAWYLLGSEYSEVGNYSEALKAFSEALKYCDDKTKGMVINELTKLSNAENLNKLQPEASTKVNSDETFETKPSAQNIADNIEESNETENIASEEEYNNVIPLRVIEGGKNYAVLDEKEENIKVTFNDVGGLDDLKETIKMKIIKPFVSPGLFDRFKKKVGGGILLFGPPGCGKTFMAKATAGECNANFIPVHITDILNPYLGQSALNVKDIFETARAKKPCVMFFDEIDTIGFNRSKLSSEHMRPVIDQLLTEIEGIDSSTQKLLIIGATNMPWDVDSAFKRPGRFDKTVFVPPPDQKAREAIFKLKLKDRPMEIIDYITLSKLTPLYSGADIENVVEVATENVIEEIMRTGIERPIGMNDLNTAIQMTKPSTLEWLRTIKNYIKYSNQSGLYDEVDKFINANKKLL
>CP025746.1|QAA33486.1|4094823_4095705_+|hypothetical-protein
MENENFKKSLYEVETYINMGRYDQAVNKLEPLISLDPNNGRMLYYLALCYYNLDIDEEAIELCQQSLSNGFSAEDCHFLLGCIYRELAKYKEAAEHYSECLRINPKNARALSSYGTVMLKTGNDKKALQLISEALQIAPSDDIVLRHMFVYNMSKGRKRHQLNSLQKYLNSENNEVSKLTHIGVFNMHNKNYPLARENFRQAFLLDPTNPNVLRLLEEMDILTNWFFLPHRLIQKAGGAVVVYLGFVIIFILTMNIKGATIHWILIITYLTFVLYTYLSLFVYRLIKKSKRKA
>CP025746.1|QAA33485.1|4093904_4094783_+|hypothetical-protein
MLTDDTKLKNQVDIYISMRKYNQAIDVLKEMLSNNPNNCRYLYLMGFCHHMIDKDEAALMYCYESLKNDSTGDSHYLLGIIYKKLSELDKSKEHYLECLRINPLEASALSSLALIMLEAGNKKEALKYLKKAEEIDPLDITVLRDIFEFHTTRKNKKYQKEALQKFLENSQNEFDKLVALGVYNLSNNRFLKARDYFRQAYVLNPTDKTMLGFLEKSSRPSQWLLIPLIPLAKTKRPGIVLLMGLVALMIIANTPIIKGAFTILYYSYISYIVYIAFVGLLLDFIEKHIRKK
>CP025746.1|QAA33484.1|4090978_4091863_-|LysR-family-transcriptional-regulator
MMINFEYYKIFYYVAKLKSITRAAEELYITQPAVSQVIKQLENTLGGNLFYRTSKGVRLTPEGEVLYTYISRGYEFMALGESKFKELLTLEAGEIRIGASDMTLQYYLLPFLEEFHKLYPKVKVKVTNLPTPETLEYLRQGKIDFGVVSQPVKEYEGVKITSVSNIRDIFIANDSFKELKNRSIELKELENYPIICLENGTSTRKYVDDFLAGEKATLNIEFELANSDLIVEFTRRSLGIGCVVQNFAEELIEKGSVFEINLKKPIPKRSICIITQDKVPISPSGKRLLDLLMS
>CP025746.1|QAA33483.1|4089595_4090870_-|adenylosuccinate-synthase
MVKAIVGGNWGDEGKGKITDMLAEKSDIVVRFQGGANAGHTIINNYGKFALHILPSGVFRKKVTNVIAQGVALNIEEFFKELDSLLERSVPMPEIKISDRAQIVMPYHILLDELEEERLGAKSFGSTKSGIAPFYSDKYLKIGIQVCDLFDDEILMNKINLNCDQKNVLLKSLYKGKTLDSNIIYNKLIGYRERLEPMVCDAALLLNNAIKQGKEILLEGQLGALKDPDNGIYPFTTSSSPLAGFGAVGAGIPPYEIKEIVTVVKAYSSAVGAGAFVSEIFDKEADTLRNLGGDCGEYGATTGRPRRMGWFDAVATRYGCMLQGTTEIALSLIDVLGYLDKIPVCIGYDINGTETKDFPVTPLLNKARPIYTYLDGWKCDITGIRNYEDLPEKARLYIEFIEAQVGYPIKYISNGPRREDIIFR
>CP025746.1|QAA33482.1|4088214_4088820_-|hypothetical-protein
MPSVSIMFLIFLLVLTIIIWVLVKRKLPRIKNYKIVAIIVLIISFILSSFYLYLKVSSGIIYAKTTNLSEECIGELRLFENIDDKEFQGKYMINAKKMDNALFDYYKLGNGLLIATNESRKIIRIEIDDKSAAGMKTSKGIGLGSSVDEVVKIYGENYYKRMDDMGIPVIGYIDRKRKVKLEFFYYQGKVTMIRYDISSMK
>CP025746.1|QAA33492.1|4105037_4105328_-|CRISPR-associated-endonuclease-Cas2
MSKINNYNYAFVFYDVNEKRVQRVFKVCKKYLSHFQKSVFRGEMSPSKLISFKKDLNKVIDKNEDFICIIKMMNDNVFGEEVLGVSSNSTGEDLII
>CP025746.1|QAA33493.1|4105327_4106326_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MGSTRYITSMGELTRKDNSLCFRKDGKNVYIPIENTKEIYCLNEVSVNTKLLDFLSQNNIIVHFFNYYEGYSGTFYPKNQYNSGRLLVAQVNKFNDDRLTIAKAIVKGIGINIREVLYHYYKHNKKEVKGTIDWIKDDFFTRVESSENIKELMAAEGEAWQRFYSEFKVFLPEDFMMNKRVKRPPDNPINALISFGNTLLYTKTISAIYRTHLDQRISYLHEPSEGRFSLSLDVSEVFKPVIVYKTIFDLVNNKKLQVNKHFDKKVNYCLLNEEGKNVFITAFEERMDSVFEHPKLKRKVSYRTAIKLDCYKLIKFIMEDKPFAPFSLKEGM
>CP025746.1|QAA33494.1|4106335_4106830_-|CRISPR-associated-protein-Cas4
MKINGTLINYYFHCKRQCYLHGNRLNLEDNSEIVKIGKAIHEERSEGRENTEISIDNIKLDKLTSEYLTEVKKSDADIEAAKWQLIYYLKVLRTKGIDRKGKLEFVEKNKSDKKILLFQLDEKLEEELENYVNEIERLILSENTPPVLNSSKCKKCAYYEYCYI
>CP025746.1|QAA33495.1|4106829_4109385_-|CRISPR-associated-helicase/endonuclease-Cas3
MYFKREYNVDLSNLINNKVPFYAHKKTGKQETLQEHTNLCAKYFKRIITSRNLESIFLNFEKLCLKDISEEGKELFRELLINTVLFHDIGKINPIFQKKNMENNIRGSEKFSQIGSKHSIISSVLYIDYYIKRVTNLPKSDVNEIILFLYLNAYVISKHHGDLDVFYKFLKLFDEDEDGYNVIEILKDNGKTVYNHDLNINRNMAKKICELVKISLVKNTEDSNGIYIYIYEKLIFSLLVAADFYSTTEFMNDVELEEFGDIRGIEEFYDIYKCTGIYKVIRQYEQKQYNEKKNLGNEKNINILRTEMFLDAEKELEKNIENNIFFLEAPTGSGKSNVSMNLSFKLLEQNNNLRKIYYVYPFNTLVEQNLQSLKKIFGYHKEIFNKISVINSISPIKLDEVKKKGKYEEDDYNYYAKALLNRQFLNYPMILTTHVSIFKTMFNASKESAFAFHQLANSVIVLDEIQSYKNIIWTEIITFLKAFAKLLNIKVIIMSATLPDLNLLIGSIEGTTNLILNRDKYFSNPLFRDRVKVDYELMNSSEVMEDLYEHVKKNSFLGKKVLIEFIKKDSAYSFFRRLKSDEDISCRIELMTGDDNSIERERILDEVKNDGGLILVATQVIEAGVDIDMDIGYKDISKLDSDEQFLGRINRSCTKTGIVHFFNLDDTKSIYSNDVRVNNSLSLIDESMKRVLLNKDFGEYYKKVLEAIIKIYNESFSDSNIKEFFNEAVEKFNFKKVEERMKLIDDNSWSMSVFLSSVIERSDGTIINGNEVWEEYRRLLQNSSMDYAENKVKLSEVRSKMNYFIYEIKKNDNFIYNERLGELYFIENGEDYFEDGKLNKEKFISGVGVFI
>CP025746.1|QAA33496.1|4109428_4110172_-|type-I-B-CRISPR-associated-protein-Cas5
MKVLKFTLYGNTAFFKKPEVNSYLYFTYGNIHKVALLGIFGAILGYGGYNQQKSGVYPEFYEKLKDIQLSIVPNNPKGFIPKKVQIFNNSVGYASKELGGNLIVKEQWLENPSWDIYLLVQDDESRKISEYIINKKAIYAPYLGKNDHYANITNVKVIDNVNEVQEIDRIDSLCLKDCFEFNIPTEDAYNLEATYVDYYKYEEQLPYGLDKDNNMYMLKPFVFTNMNANLTEEIKVYKVEEKNIVFY
>CP025746.1|QAA33497.1|4110175_4111126_-|CRISPR-associated-protein
MNKRVYGVIGISSIMANWNADFTGYPKTTSSGDTFGSDKALKYPMKKMWENNGEKVLYIKSMKFSKDKKGEVQLVPRALKERYEYIFGVEDLKKCKSAEEVLKNLFSAIDVKNFGATFAEEGNNISITGAVQIGQGFNKYDGTNPEEQQILSPFRDGSKDSVKPDSEEAKNSTLGTKIVSNEAHYFYPFTINPLTYKEYKELGVTEGYTEEDYIKFKETAVVSATSFATNSKVGCENEFALFVETEENLYLPNLSEYIDFTKGKDKNTIAIKCSELLNSVGDRIKNVEIYYNPYTTIIESEIKGAKQFNIFTQKEV
>CP025746.1|QAA33498.1|4111118_4112879_-|type-I-B-CRISPR-associated-protein-Cas8b/Csh1
MLKECLEVFKNQLEENTEKLITDSYIPSDGTYLLVEPIGDSYEIKETINIKLDKKTREVDKSNEFFQYICEADYNSKLIDMNKPIDGKKIIHSNNYLSFFIKKESLLIDPATKERKLTEERIDEYYAILSNPYLKYSKGKGKSLYETVENEIGQVDIERLEKIRAWIKENIFNLEIDITGKDYLKIFFRYPIEDYVKEGKRYLIPNIYNSNDFNVNIGKVIYGLPNDNMGLNAKKPYLENKSRKTKVPYLVDNEEVLLQKKFFDYLMNFAAVGKVNIYIGKEVKGYKNGDLPEEDFQGIFLRIKKGKEVEVHDFDSIPSYKVELPKKFNLVNVLDADLDKLGLEGYKRYSNRLKMQELVDDILFSNFLKNNYFTESKDIGTNDNSLKNNLLISRGGLFNWFHKGVDSGVAKVLERVSLSLVKNSVLKGSYMDKKACHQFNLRWSLINYFEGGENMADIIKNLKENLKNKINSKETESIESDNEYFFAIGQLVNFFLSKSKGKKKPHSLANPFINAKENKFLKEKLMALYKKYNYDIEKNGKRFNNLYGMIVSYETEAKVNQDMILAGYLHSSLIYESDKKEDNINE
>CP025746.1|QAA33499.1|4112893_4113586_-|CRISPR-associated-endoribonuclease-Cas6
MEVFEVKLKLFLLKDVQFTEIQSKISSFIDMGLAKDEKYLEFHNENKFKNYCFDSLYPIEKDKIYNSGKIYTLTLRTVGEDLAKFFLERLKNEYDENFKGLTAEVRIVPKKHIEKIYSITPMLIKNDCGYWKGKITLDEFERRLKENLIKKYNSIANEKIDEDFQLYTSIEFKNRKPISTSYKQIKLLGDKISINISDDKRAQDLAYMSLGTGIAEMNPRGYGFVNYRWL
>CP025746.1|QAA33500.1|4113972_4114104_-|endoribonuclease-L-PSP
MFRYFCQVLLTKKWGISIKKESLSQINQGLKIPRDYCRQLEDN
>CP025746.1|QAA33501.1|4116291_4116534_-|hypothetical-protein
MTEIGKMIRDEGLKEGRQEGLKEGMEIGKVELLIKQLIKKFKKIPSEYEEKIKKLPVTTIDVIATDIFVLEFVKDLDEYF

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Crispr_ID: CP025746_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025746_5

4116587-4116876

TypeI-B

II-B

Consensus_repeat	Method
ATTTAAATACATCCCATGTTAAGGTTAATC	CRISPRCasFinder
TATTTAAATACATCCCATGTTAAGGTTAATC	CRT
ATTTAAATACATCCCATGTTAAGGTTAATCTTT	PILER-CR

4 spacers

cas6,cas8b1,cas7b,cas5,cas3,cas4,cas1,cas2

The CRISPR arrays of CP025746_5

>merge|CP025746|5|4116587-4116876|CRISPRCasFinder,CRT,PILER-CR
AAGCAAACACATCCCATTCTATGATTAATCATAGGTGGAGTTTATGATATAAAAAAAACTTTCTTATTTGAATACATCTCATGTTAAGGTTAATCTTTCTACTGTTCCTCTTATTTCTTCCCTTAACTCTATTTAAATACATCCCATGTTAAGGTTAATCTTTTTGTAATGGGGCCAGGATACAAGTTTAAAGAATTTAAATACATCCCATGTTAAGGTTAATCATCATATAGTTTTTACATACCATTGTATTTATTTTTATTTAAATACATCCCATGTTATTGATTTAT

>CP025746|5|5|4116587-4116876|CRISPRCasFinder
AAGCAAACACATCCCATTCTATGATTAATC	ATAGGTGGAGTTTATGATATAAAAAAAACTTTCTT
ATTTGAATACATCTCATGTTAAGGTTAATC	TTTCTACTGTTCCTCTTATTTCTTCCCTTAACTCT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTTGTAATGGGGCCAGGATACAAGTTTAAAGA
ATTTAAATACATCCCATGTTAAGGTTAATC	ATCATATAGTTTTTACATACCATTGTATTTATTTTT
ATTTAAATACATCCCATGTTATTGATTTAT

>CP025746|5|3|4116651-4116876|CRT
TATTTGAATACATCTCATGTTAAGGTTAATC	TTTCTACTGTTCCTCTTATTTCTTCCCTTAACTC
TATTTAAATACATCCCATGTTAAGGTTAATC	TTTTTGTAATGGGGCCAGGATACAAGTTTAAAG
AATTTAAATACATCCCATGTTAAGGTTAATC	ATCATATAGTTTTTACATACCATTGTATTTATTTT
TATTTAAATACATCCCATGTTATTGATTTAT

>CP025746|5|3|4116652-4116810|PILER-CR
ATTTGAATACATCTCATGTTAAGGTTAATCTTT	CTACTGTTCCTCTTATTTCTTCCCTTAACTCT
ATTTAAATACATCCCATGTTAAGGTTAATCTTT	TTGTAATGGGGCCAGGATACAAGTTTAAAGA
ATTTAAATACATCCCATGTTAAGGTTAATC

Protein	Signature genes	Signature genes Name	Protein_function
CP025746.1\|QAA33510.1\|4128247_4128784_-\|DUF4256-domain-containing-protein	unknown	unknown	gnl\|CDD\|339073
CP025746.1\|QAA33499.1\|4112893_4113586_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP025746.1\|QAA33509.1\|4127524_4127848_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP025746.1\|QAA33508.1\|4126821_4127256_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143393
CP025746.1\|QAA33494.1\|4106335_4106830_-\|CRISPR-associated-protein-Cas4	cas4	pfam01930_cas4_CAS-I	gnl\|CDD\|366863
CP025746.1\|QAA33502.1\|4116968_4118435_+\|transposase	unknown	unknown	gnl\|CDD\|226950
CP025746.1\|QAA33492.1\|4105037_4105328_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP025746.1\|QAA33507.1\|4125478_4126360_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
CP025746.1\|QAA33496.1\|4109428_4110172_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cls001430_cas5_CAS-I-B	gnl\|CDD\|131641
CP025746.1\|QAA33498.1\|4111118_4112879_-\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
CP025746.1\|QAA33505.1\|4119773_4120217_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379669
CP025746.1\|QAA33500.1\|4113972_4114104_-\|endoribonuclease-L-PSP	unknown	unknown	unknown
CP025746.1\|QAA33511.1\|4129766_4130303_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99749
CP025746.1\|QAA33501.1\|4116291_4116534_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316753
CP025746.1\|QAA33495.1\|4106829_4109385_-\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	cd09639_cas3_CAS-I	gnl\|CDD\|350688
CP025746.1\|QAA33497.1\|4110175_4111126_-\|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
CP025746.1\|QAA33503.1\|4118437_4119184_+\|DNA-replication-protein	unknown	unknown	gnl\|CDD\|181681
CP025746.1\|QAA33504.1\|4119201_4119648_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33493.1\|4105327_4106326_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|187853
CP025746.1\|QAA33506.1\|4120254_4121529_+\|transposase	unknown	unknown	gnl\|CDD\|225995

Protein	Function_ID	Function_description	E-value
CP025746.1\|QAA33510.1\|4128247_4128784_-\|DUF4256-domain-containing-protein	gnl\|CDD\|339073	pfam14066, DUF4256, Protein of unknown function (DUF4256). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 190 amino acids in length.	2.14512e-134
CP025746.1\|QAA33499.1\|4112893_4113586_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.95477e-16
CP025746.1\|QAA33509.1\|4127524_4127848_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.29535e-14
CP025746.1\|QAA33508.1\|4126821_4127256_-\|hypothetical-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	3.27948e-12
CP025746.1\|QAA33494.1\|4106335_4106830_-\|CRISPR-associated-protein-Cas4	gnl\|CDD\|366863	pfam01930, Cas_Cas4, Domain of unknown function DUF83. This domain has no known function. The domain contains three conserved cysteines at its C-terminus.	2.13084e-55
CP025746.1\|QAA33502.1\|4116968_4118435_+\|transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.10895e-21
CP025746.1\|QAA33492.1\|4105037_4105328_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	5.10253e-23
CP025746.1\|QAA33507.1\|4125478_4126360_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.75309e-33
CP025746.1\|QAA33496.1\|4109428_4110172_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|131641	TIGR02592, hypothetical_protein_CTC_01466, CRISPR-associated protein Cas5, subtype I-B/HMARI. This is a CRISPR-associated protein unique to the hmari subtype of cas genes and CRISPR repeat, which is the only subtype present in Haloarcula marismortui ATCC 43049. The hmari type, though uncommon, is also found in the Aquificae, Thermotogae, Firmicutes, and Dictyoglomi.	2.75161e-58
CP025746.1\|QAA33498.1\|4111118_4112879_-\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	1.08712e-21
CP025746.1\|QAA33505.1\|4119773_4120217_+\|hypothetical-protein	gnl\|CDD\|379669	pfam14690, zf-ISL3, zinc-finger of transposase IS204/IS1001/IS1096/IS1165.	1.68789e-08
CP025746.1\|QAA33503.1\|4118437_4119184_+\|DNA-replication-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	6.63813e-71
CP025746.1\|QAA33501.1\|4116291_4116534_-\|hypothetical-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	3.89521e-05
CP025746.1\|QAA33495.1\|4106829_4109385_-\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	5.61272e-30
CP025746.1\|QAA33497.1\|4110175_4111126_-\|CRISPR-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.30926e-48
CP025746.1\|QAA33511.1\|4129766_4130303_+\|hypothetical-protein	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.40964e-25
CP025746.1\|QAA33493.1\|4105327_4106326_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187853	cd09722, Cas1_I-B, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	9.53705e-158
CP025746.1\|QAA33506.1\|4120254_4121529_+\|transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.66858e-16

>CP025746.1|QAA33501.1|4116291_4116534_-|hypothetical-protein
MTEIGKMIRDEGLKEGRQEGLKEGMEIGKVELLIKQLIKKFKKIPSEYEEKIKKLPVTTIDVIATDIFVLEFVKDLDEYF
>CP025746.1|QAA33500.1|4113972_4114104_-|endoribonuclease-L-PSP
MFRYFCQVLLTKKWGISIKKESLSQINQGLKIPRDYCRQLEDN
>CP025746.1|QAA33499.1|4112893_4113586_-|CRISPR-associated-endoribonuclease-Cas6
MEVFEVKLKLFLLKDVQFTEIQSKISSFIDMGLAKDEKYLEFHNENKFKNYCFDSLYPIEKDKIYNSGKIYTLTLRTVGEDLAKFFLERLKNEYDENFKGLTAEVRIVPKKHIEKIYSITPMLIKNDCGYWKGKITLDEFERRLKENLIKKYNSIANEKIDEDFQLYTSIEFKNRKPISTSYKQIKLLGDKISINISDDKRAQDLAYMSLGTGIAEMNPRGYGFVNYRWL
>CP025746.1|QAA33498.1|4111118_4112879_-|type-I-B-CRISPR-associated-protein-Cas8b/Csh1
MLKECLEVFKNQLEENTEKLITDSYIPSDGTYLLVEPIGDSYEIKETINIKLDKKTREVDKSNEFFQYICEADYNSKLIDMNKPIDGKKIIHSNNYLSFFIKKESLLIDPATKERKLTEERIDEYYAILSNPYLKYSKGKGKSLYETVENEIGQVDIERLEKIRAWIKENIFNLEIDITGKDYLKIFFRYPIEDYVKEGKRYLIPNIYNSNDFNVNIGKVIYGLPNDNMGLNAKKPYLENKSRKTKVPYLVDNEEVLLQKKFFDYLMNFAAVGKVNIYIGKEVKGYKNGDLPEEDFQGIFLRIKKGKEVEVHDFDSIPSYKVELPKKFNLVNVLDADLDKLGLEGYKRYSNRLKMQELVDDILFSNFLKNNYFTESKDIGTNDNSLKNNLLISRGGLFNWFHKGVDSGVAKVLERVSLSLVKNSVLKGSYMDKKACHQFNLRWSLINYFEGGENMADIIKNLKENLKNKINSKETESIESDNEYFFAIGQLVNFFLSKSKGKKKPHSLANPFINAKENKFLKEKLMALYKKYNYDIEKNGKRFNNLYGMIVSYETEAKVNQDMILAGYLHSSLIYESDKKEDNINE
>CP025746.1|QAA33497.1|4110175_4111126_-|CRISPR-associated-protein
MNKRVYGVIGISSIMANWNADFTGYPKTTSSGDTFGSDKALKYPMKKMWENNGEKVLYIKSMKFSKDKKGEVQLVPRALKERYEYIFGVEDLKKCKSAEEVLKNLFSAIDVKNFGATFAEEGNNISITGAVQIGQGFNKYDGTNPEEQQILSPFRDGSKDSVKPDSEEAKNSTLGTKIVSNEAHYFYPFTINPLTYKEYKELGVTEGYTEEDYIKFKETAVVSATSFATNSKVGCENEFALFVETEENLYLPNLSEYIDFTKGKDKNTIAIKCSELLNSVGDRIKNVEIYYNPYTTIIESEIKGAKQFNIFTQKEV
>CP025746.1|QAA33496.1|4109428_4110172_-|type-I-B-CRISPR-associated-protein-Cas5
MKVLKFTLYGNTAFFKKPEVNSYLYFTYGNIHKVALLGIFGAILGYGGYNQQKSGVYPEFYEKLKDIQLSIVPNNPKGFIPKKVQIFNNSVGYASKELGGNLIVKEQWLENPSWDIYLLVQDDESRKISEYIINKKAIYAPYLGKNDHYANITNVKVIDNVNEVQEIDRIDSLCLKDCFEFNIPTEDAYNLEATYVDYYKYEEQLPYGLDKDNNMYMLKPFVFTNMNANLTEEIKVYKVEEKNIVFY
>CP025746.1|QAA33495.1|4106829_4109385_-|CRISPR-associated-helicase/endonuclease-Cas3
MYFKREYNVDLSNLINNKVPFYAHKKTGKQETLQEHTNLCAKYFKRIITSRNLESIFLNFEKLCLKDISEEGKELFRELLINTVLFHDIGKINPIFQKKNMENNIRGSEKFSQIGSKHSIISSVLYIDYYIKRVTNLPKSDVNEIILFLYLNAYVISKHHGDLDVFYKFLKLFDEDEDGYNVIEILKDNGKTVYNHDLNINRNMAKKICELVKISLVKNTEDSNGIYIYIYEKLIFSLLVAADFYSTTEFMNDVELEEFGDIRGIEEFYDIYKCTGIYKVIRQYEQKQYNEKKNLGNEKNINILRTEMFLDAEKELEKNIENNIFFLEAPTGSGKSNVSMNLSFKLLEQNNNLRKIYYVYPFNTLVEQNLQSLKKIFGYHKEIFNKISVINSISPIKLDEVKKKGKYEEDDYNYYAKALLNRQFLNYPMILTTHVSIFKTMFNASKESAFAFHQLANSVIVLDEIQSYKNIIWTEIITFLKAFAKLLNIKVIIMSATLPDLNLLIGSIEGTTNLILNRDKYFSNPLFRDRVKVDYELMNSSEVMEDLYEHVKKNSFLGKKVLIEFIKKDSAYSFFRRLKSDEDISCRIELMTGDDNSIERERILDEVKNDGGLILVATQVIEAGVDIDMDIGYKDISKLDSDEQFLGRINRSCTKTGIVHFFNLDDTKSIYSNDVRVNNSLSLIDESMKRVLLNKDFGEYYKKVLEAIIKIYNESFSDSNIKEFFNEAVEKFNFKKVEERMKLIDDNSWSMSVFLSSVIERSDGTIINGNEVWEEYRRLLQNSSMDYAENKVKLSEVRSKMNYFIYEIKKNDNFIYNERLGELYFIENGEDYFEDGKLNKEKFISGVGVFI
>CP025746.1|QAA33494.1|4106335_4106830_-|CRISPR-associated-protein-Cas4
MKINGTLINYYFHCKRQCYLHGNRLNLEDNSEIVKIGKAIHEERSEGRENTEISIDNIKLDKLTSEYLTEVKKSDADIEAAKWQLIYYLKVLRTKGIDRKGKLEFVEKNKSDKKILLFQLDEKLEEELENYVNEIERLILSENTPPVLNSSKCKKCAYYEYCYI
>CP025746.1|QAA33493.1|4105327_4106326_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MGSTRYITSMGELTRKDNSLCFRKDGKNVYIPIENTKEIYCLNEVSVNTKLLDFLSQNNIIVHFFNYYEGYSGTFYPKNQYNSGRLLVAQVNKFNDDRLTIAKAIVKGIGINIREVLYHYYKHNKKEVKGTIDWIKDDFFTRVESSENIKELMAAEGEAWQRFYSEFKVFLPEDFMMNKRVKRPPDNPINALISFGNTLLYTKTISAIYRTHLDQRISYLHEPSEGRFSLSLDVSEVFKPVIVYKTIFDLVNNKKLQVNKHFDKKVNYCLLNEEGKNVFITAFEERMDSVFEHPKLKRKVSYRTAIKLDCYKLIKFIMEDKPFAPFSLKEGM
>CP025746.1|QAA33492.1|4105037_4105328_-|CRISPR-associated-endonuclease-Cas2
MSKINNYNYAFVFYDVNEKRVQRVFKVCKKYLSHFQKSVFRGEMSPSKLISFKKDLNKVIDKNEDFICIIKMMNDNVFGEEVLGVSSNSTGEDLII
>CP025746.1|QAA33502.1|4116968_4118435_+|transposase
MKDVKDWITIKRMYERGVPIRQIAKELKVSRNTVKRLIKLDEEPKYKKRKYSTKIDYFHEDIKMWYLEPEYNFIGTRIFRELKRLGYNGSISPLYRYLNSLKEEKRSLPLKATKRIETPLGDQAQFDWAEYLMWVGGEKIKVYCYSLILAASRKKAIIFARSCDGEAIYESIHLLFKRIGGVTKELLIDNPKALVVSNHPEEEVNFNINALRLAQHLGISLNACNPYRPRTKGKIEKPFQYIEEQFVKGNKFDSMTHLNKAAEAFIEDSNNLKHGTTLRITNEYFTEEIPYLAPVKNKPFIITDLKERKVSLDSFISVDAVKYSVPIEYVGKKVVFRITLGYKLEVYNSALDVIATHEIITQKGKMVTVDDHYGALNNIAPKSIPEIVRQFESTFPSGSLFYKNCIAHLNQPSYHLRKIIKLKELYDNDSLELLLRYCIKENIYNINDIKNILKTKYLDIVKGISAKDELLTLSETSRELSYYEEGQF
>CP025746.1|QAA33503.1|4118437_4119184_+|DNA-replication-protein
MKSTINTSPDHISRLLKQFKLIDIQTNYESEIAYAIENNIGHREFLVRLLEIEAEGKRERNVEKNIKAARFEGIKTLDGFDFSFPEKINESKIRDLETLSFIENKENVILIGPPGVGKSHIGISLGVLACKKGFKVLFTTAQEFIDNLYKSYMNGTLDSTFKAIRKIEVLIIDELGHFQTDKEKESIFFQIIRQRYEKGSLIITTNVPLGNWDKIFSSKLAATAILDRLIHHCHLISITGDSYRVKGK
>CP025746.1|QAA33504.1|4119201_4119648_+|hypothetical-protein
MKRKHDHRDLDYMKFIEIFNTEDRKSARDYVKEHIPFNYDYFIKLVKRYTGYQYNKESKKFELLKATESQFISIDDLLNKPKDNATSIVASIPKAIYYKDPLDELNLDLLQDRLIELSKYIKIKSSTKSIEINLIRLREGGYDIELIS
>CP025746.1|QAA33505.1|4119773_4120217_+|hypothetical-protein
MDELIKLLDSNLQYIKHELVDDTIYIEVSSNRKSVSCPYCGEKSDKAHSWYKKSFQDLPMQNKKVVIILNNRKMFCNNQSCSKKTFAETFEFLAPNAKKSSRLENEIINISVNVSSLAAERIIRNRIANIGKSTICNLLKKRNSYNR
>CP025746.1|QAA33506.1|4120254_4121529_+|transposase
MKKRSTYGTVMIDIETKHIVDILDSRELDNVVEWLKTYPNLEVISRDGAQTYATAIKKAHPKSIQISDRFHILKNLTDYCKKYLTKILSFNVKLEKQTSRNLKQETAYGNTRKLNRINQANILYDKGKSPKEIGLELKMDIRTVKKYLSLDKSELILKENDSPNLNHKENVTKKEKNLNQVRKLHKQGYGIREISRETGISRQTVRRYLDSNDCAVHGTFGISKKSPLSQFHSIIDDLLTKGYTFRIIEEHLRLNGYTGSASAIRMYSTRKRRLIKQVIDCNYLKYELIDRKYLIKLLYKPLDKVKAISIEQLEVICKEYPILSKIYLLVDSFKKILFSKKPTALDTWLEDAKKLNISEINSFIKGLTKDIAAVKNAIMYKYSNGLAEGSVNKIKVIKRIMYGRCTFETLRKKVLSYERLRTFN
>CP025746.1|QAA33507.1|4125478_4126360_-|AraC-family-transcriptional-regulator
MVHIEEIQAALDYIEMNLHEELTLDDIAKAVGFSKFYFHRVFQREVGTSLYNYVRKRRLTMAASLLLNTNIPILDIALTYRFESQEAFTRAFKSVYQLPPGRYRTAIKNLIVGGVNMSDQSKVKGWIFTGTAPEKYKFEMDNKIYHMGSRSATICSVGDEFSYEDYSSIMQQISAKNFIGKRMRFSGFVKTEEVEQWCGLWMRLDSAQGVTLKLDNMQNRPIKGTTEWNYYYCVMDIPQDAAVINIGVLLTEKGKIWFDNADFQEVDKSIPTTEYVPEEIFPDNIVNPSFEEV
>CP025746.1|QAA33508.1|4126821_4127256_-|hypothetical-protein
MFNHNRYESSKDKTSILNIINSDAFKTLFTDKGINNVIIFGSLANGEFTAESDVDIAIISKTPISFNDELILTQNLEELLDRDIDLIDINDDNINNLVKISALNGKFIVLSDSILEETIEFYDNLFRENEEFWRILDREVLGIE
>CP025746.1|QAA33509.1|4127524_4127848_-|thioredoxin
MVKVDNGEDIKNILTTNEMVILYFSNTTCGACTAIKNKVLSILRSYPEVKLIDINGEEKRELAALNDVFSFPLLILYVAGKEVVRVGRNLSIIELENTIKRYYEMLF
>CP025746.1|QAA33510.1|4128247_4128784_-|DUF4256-domain-containing-protein
MSNEELINILKNRFEKNISRHKDIEWAKVQAKLEANTKKLSSLDEMEATGGEPDVVEYDESTDEYIFYDCSPESPKGRRSLCYDGEALEARKENKPKSSALDMAAAMGIELLTEHQYRHLQSIGNFDMKTSSWLKTPPEIRKLGGSIFGDFRYGNVFIYHNGAESYYAGRGFRGVLRV
>CP025746.1|QAA33511.1|4129766_4130303_+|hypothetical-protein
MSNLDYSLDNITVEWINDIKYMSPSPHPNHGIVYSELFNSFYNYLKGKNFKVFPHKTDLCLSDPNEPIKINDLKKPIVPDLFVVCDKKFELVGNNIVSIPDYICEIVSPSSIKMDNEIKRDLYLSKGVKEYWIVNYLDNSIKVYFDNKETTFSFDDNVKVNIFDDLTICLKDIELFEI

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Crispr_ID: CP025746_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025746_6

4121554-4125158

TypeI-B

II-B

Consensus_repeat	Method
ATTTAAATACATCCCATGTTAAGGTTAATC	CRT
ATTTAAATACATCCCATGTTAAGGTTAATC	PILER-CR
ATTTAAATACATCCCATGTTAAGGTTAATC	CRISPRCasFinder

55 spacers

cas6,cas8b1,cas7b

The CRISPR arrays of CP025746_6

>merge|CP025746|6|4121554-4125158|CRT,PILER-CR,CRISPRCasFinder
TGACAATCTACACCCATGTTAAGGTTAATCAGAAACGTCTTTTTAATGCTCTTAGATGGTCATTATTTAAATACATCCCATGTTAAGGTTAATCTAGTCTTACCTTGACCATAAAGACCAACAACAAGAATTTAAATACATCCCATGTTAAGGTTAATCAAGGCTTTAAGGATAGATTTTTCTTTGTAACAAAATTTAAATACATCCCATGTTAAGGTTAATCAAAAGGAAGTATTTTCTATAGAAGGAGCGGTCAATAATTTAAATACATCCCATGTTAAGGTTAATCAAGAAAATGGCTTCTAAGGCAGTAATACCAATGGTTATTTAAATACATCCCATGTTAAGGTTAATCTTGTATGCTCTCTTATTAGCTCCAGCCAATGTAAATTTAAATACATCCCATGTTAAGGTTAATCCTATTAAACCTTGCTTATATTCACTTCTAAGGGTTATTTAAATACATCCCATGTTAAGGTTAATCAAAATGAAGTGTGTTTCAAGAGTTCTGTATTTTGAATTTAAATACATCCCATGTTAAGGTTAATCAAGAGGAATAGAAGTATATCCTTATATAGAGCCATAATTTAAATACATCCCATGTTAAGGTTAATCTTTTGCAAGCCTAATAATGTAGTATTGGCTTTTAGATTTAAATACATCCCATGTTAAGGTTAATCTAATACCACCTTTTGCATACCATTCTACTCCAAGGATTTAAATACATCCCATGTTAAGGTTAATCCCATGCTAGAACTTAAAAATAATATGTTTAACGCATTTAAATACATCCCATGTTAAGGTTAATCAGTGTAGATCAAAAAGAAGTACACTTCGTTACATAATTTAAATACATCCCATGTTAAGGTTAATCTTATAAAATTAATTATAAAGCTAAAATGACAGCGATTTAAATACATCCCATGTTAAGGTTAATCGTCTAGAAAATGGCAAGTTACAATAAATAATCCTGTATTTAAATACATCCCATGTTAAGGTTAATCGAAATAGTCAAAATTATCATAGCACTTTTGCTATGATTTAAATACATCCCATGTTAAGGTTAATCACTCAAGATAATCATCATGAACATTTACTATATTTATTTAAATACATCCCATGTTAAGGTTAATCATATTGGACATGAATGGTTCTGAACCGATTCTAAAATTTAAATACATCCCATGTTAAGGTTAATCCTAAAGCTACAAAAAAGCGACAAGCCAAAACCATATTTAAATACATCCCATGTTAAGGTTAATCCAGATTGTGGCTAGTAGTCAGGTGTTTGGTAGAGTATTTAAATACATCCCATGTTAAGGTTAATCTTTATATGATGCTATAAAAGGGGGTGCTAGTAACATTTAAATACATCCCATGTTAAGGTTAATCAGTGTGCTAAAGAATAATTTAGATGGATTAACAACATTTAAATACATCCCATGTTAAGGTTAATCGTTGGATCACGAATACAGTTTTAATTTTAAAAGTTTATTTAAATACATCCCATGTTAAGGTTAATCTCTAGGTTCTTTTCTTTTTGAAAGAAGGTGATAAATATTTAAATACATCCCATGTTAAGGTTAATCGCTTACAAGTGTTAGGCAGTATGATCAAGAAGATTAATTTAAATACATCCCATGTTAAGGTTAATCCCATACTCTGACATTATTTAGCTGGCCTTATATCCAATTTAAATACATCCCATGTTAAGGTTAATCAAGAAATTGGCCGAAAGCAGTAAGGGTAATAGTGTATTTAAATACATCCCATGTTAAGGTTAATCAAAGATTAAAATGGGATAAAGAAAAGTTCACTTAATTTAAATACATCCCATGTTAAGGTTAATCTAGAAGAACAAATGAGATAACTTTTGGGTTTATAAATTTAAATACATCCCATGTTAAGGTTAATCCCATAAGCAGAATAAACTTTGTTTTGAACGAGATATTTAAATACATCCCATGTTAAGGTTAATCCTTACAAGTGTTAGGCAGTATGATCAAGAAGATTAATTTAAATACATCCCATGTTAAGGTTAATCAGAATCCTTAAAATCAGAAATATTATCACCAATAATTTAAATACATCCCATGTTAAGGTTAATCAAATAGTCTTACCATCTAAAGAAACACTATAAATATTTAAATACATCCCATGTTAAGGTTAATCGCAACACAGACCTATACATAAATCATTTTTAAATAGATTTAAATACATCCCATGTTAAGGTTAATCATTGTTCCCCAAAAACCGTCGTCAGGTTCCCAAGACATTTAAATACATCCCATGTTAAGGTTAATCATATTATCTCATATTTATTATTTTTAAATTCTTCAATTTAAATACATCCCATGTTAAGGTTAATCTTTGATAATTATAAGGGACAAGATGTGATTGTGTTATTTAAATACATCCCATGTTAAGGTTAATCTTACGAAGAAGATGGTGAAATAACTTCCTATGTTTATTTAAATACATCCCATGTTAAGGTTAATCTTAAAGAGGCTTTTAATAACTTTTCTAATACTGGATTTAAATACATCCCATGTTAAGGTTAATCTGTCCTACTGGAATATTTCCATTGTATTGCTTGCTTATTTAAATACATCCCATGTTAAGGTTAATCCTAGTTCTAATACTACGGAGGGTTAATATGTTAATATTTAAATACATCCCATGTTAAGGTTAATCTAAAGCAGCAGGAAAAGAGGATAAATTTAAGGAGATTTAAATACATCCCATGTTAAGGTTAATCTAGAAGAAAACCCTTTAATAATCTCAGTTATCTTTATTTAAATACATCCCATGTTAAGGTTAATCAGGTTTTAGATCAGTGATTGCAATAGCTTGTTTCATTTAAATACATCCCATGTTAAGGTTAATCCGGACAGTTTGAAAATAACTATATAATGTTTCAAGTATTTAAATACATCCCATGTTAAGGTTAATCATTGATACGAAATTTTATTGTGTATCAGATTGAAAAATTTAAATACATCCCATGTTAAGGTTAATCCCATTAAATATATCCGTTTTTAAATACCATATAAAGATTTAAATACATCCCATGTTAAGGTTAATCTAAGACTCTTTCTATGGTAGAGTATATCACTAGAGATTTAAATACATCCCATGTTAAGGTTAATCAAAAACCTTTCCCACTGCTGTAGCAGATGCTTTTTCATTTAAATACATCCCATGTTAAGGTTAATCAGTCCTTTTCATATTGTTGATAATTCCCCTATAGCATTTAAATACATCCCATGTTAAGGTTAATCTTATTAGGAATTGAAGATGTAAGTAAATTAGCGTAGATTTAAATACATCCCATGTTAAGGTTAATCTTTGAACTATATTTCAAAAAAGGAGTAATAAAAGATTTAAATACATCCCATGTTAAGGTTAATCTTTTTGAAGTCCTACCCTGCAAGCTTGTAATTTTATTTAAATACATCCCATGTTAAGGTTAATCTATTGTGTTGACGATAGAATTTACTTCAGATCTAGATTTAAATACATCCCATGTTAAGGTTAATCATTAAGTAATACTTCATTGTCTTTAAACTCTTTCAATTTAAATACATCCCATGTTAAGGTTAATC

>CP025746|6|4|4121554-4125158|CRT
TGACAATCTACACCCATGTTAAGGTTAATC	AGAAACGTCTTTTTAATGCTCTTAGATGGTCATT
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGTCTTACCTTGACCATAAAGACCAACAACAAGA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGGCTTTAAGGATAGATTTTTCTTTGTAACAAA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAAGGAAGTATTTTCTATAGAAGGAGCGGTCAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAAAATGGCTTCTAAGGCAGTAATACCAATGGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTGTATGCTCTCTTATTAGCTCCAGCCAATGTAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATTAAACCTTGCTTATATTCACTTCTAAGGGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAATGAAGTGTGTTTCAAGAGTTCTGTATTTTGA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAGGAATAGAAGTATATCCTTATATAGAGCCATA
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTGCAAGCCTAATAATGTAGTATTGGCTTTTAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAATACCACCTTTTGCATACCATTCTACTCCAAGG
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATGCTAGAACTTAAAAATAATATGTTTAACGC
ATTTAAATACATCCCATGTTAAGGTTAATC	AGTGTAGATCAAAAAGAAGTACACTTCGTTACATA
ATTTAAATACATCCCATGTTAAGGTTAATC	TTATAAAATTAATTATAAAGCTAAAATGACAGCG
ATTTAAATACATCCCATGTTAAGGTTAATC	GTCTAGAAAATGGCAAGTTACAATAAATAATCCTGT
ATTTAAATACATCCCATGTTAAGGTTAATC	GAAATAGTCAAAATTATCATAGCACTTTTGCTATG
ATTTAAATACATCCCATGTTAAGGTTAATC	ACTCAAGATAATCATCATGAACATTTACTATATTT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATATTGGACATGAATGGTTCTGAACCGATTCTAAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CTAAAGCTACAAAAAAGCGACAAGCCAAAACCAT
ATTTAAATACATCCCATGTTAAGGTTAATC	CAGATTGTGGCTAGTAGTCAGGTGTTTGGTAGAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTATATGATGCTATAAAAGGGGGTGCTAGTAAC
ATTTAAATACATCCCATGTTAAGGTTAATC	AGTGTGCTAAAGAATAATTTAGATGGATTAACAAC
ATTTAAATACATCCCATGTTAAGGTTAATC	GTTGGATCACGAATACAGTTTTAATTTTAAAAGTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCTAGGTTCTTTTCTTTTTGAAAGAAGGTGATAAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	GCTTACAAGTGTTAGGCAGTATGATCAAGAAGATTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATACTCTGACATTATTTAGCTGGCCTTATATCCA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAAATTGGCCGAAAGCAGTAAGGGTAATAGTGT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAGATTAAAATGGGATAAAGAAAAGTTCACTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGAAGAACAAATGAGATAACTTTTGGGTTTATAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATAAGCAGAATAAACTTTGTTTTGAACGAGAT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTTACAAGTGTTAGGCAGTATGATCAAGAAGATTA
ATTTAAATACATCCCATGTTAAGGTTAATC	AGAATCCTTAAAATCAGAAATATTATCACCAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAATAGTCTTACCATCTAAAGAAACACTATAAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	GCAACACAGACCTATACATAAATCATTTTTAAATAG
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTGTTCCCCAAAAACCGTCGTCAGGTTCCCAAGAC
ATTTAAATACATCCCATGTTAAGGTTAATC	ATATTATCTCATATTTATTATTTTTAAATTCTTCA
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTGATAATTATAAGGGACAAGATGTGATTGTGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTACGAAGAAGATGGTGAAATAACTTCCTATGTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTAAAGAGGCTTTTAATAACTTTTCTAATACTGG
ATTTAAATACATCCCATGTTAAGGTTAATC	TGTCCTACTGGAATATTTCCATTGTATTGCTTGCTT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTAGTTCTAATACTACGGAGGGTTAATATGTTAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAAGCAGCAGGAAAAGAGGATAAATTTAAGGAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGAAGAAAACCCTTTAATAATCTCAGTTATCTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	AGGTTTTAGATCAGTGATTGCAATAGCTTGTTTC
ATTTAAATACATCCCATGTTAAGGTTAATC	CGGACAGTTTGAAAATAACTATATAATGTTTCAAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTGATACGAAATTTTATTGTGTATCAGATTGAAAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATTAAATATATCCGTTTTTAAATACCATATAAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAGACTCTTTCTATGGTAGAGTATATCACTAGAG
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAAACCTTTCCCACTGCTGTAGCAGATGCTTTTTC
ATTTAAATACATCCCATGTTAAGGTTAATC	AGTCCTTTTCATATTGTTGATAATTCCCCTATAGC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTATTAGGAATTGAAGATGTAAGTAAATTAGCGTAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTGAACTATATTTCAAAAAAGGAGTAATAAAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTTGAAGTCCTACCCTGCAAGCTTGTAATTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TATTGTGTTGACGATAGAATTTACTTCAGATCTAG
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTAAGTAATACTTCATTGTCTTTAAACTCTTTCA
ATTTAAATACATCCCATGTTAAGGTTAATC

>CP025746|6|4|4121618-4125158|PILER-CR
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGTCTTACCTTGACCATAAAGACCAACAACAAGA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGGCTTTAAGGATAGATTTTTCTTTGTAACAAA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAAGGAAGTATTTTCTATAGAAGGAGCGGTCAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAAAATGGCTTCTAAGGCAGTAATACCAATGGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTGTATGCTCTCTTATTAGCTCCAGCCAATGTAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATTAAACCTTGCTTATATTCACTTCTAAGGGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAATGAAGTGTGTTTCAAGAGTTCTGTATTTTGA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAGGAATAGAAGTATATCCTTATATAGAGCCATA
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTGCAAGCCTAATAATGTAGTATTGGCTTTTAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAATACCACCTTTTGCATACCATTCTACTCCAAGG
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATGCTAGAACTTAAAAATAATATGTTTAACGC
ATTTAAATACATCCCATGTTAAGGTTAATC	AGTGTAGATCAAAAAGAAGTACACTTCGTTACATA
ATTTAAATACATCCCATGTTAAGGTTAATC	TTATAAAATTAATTATAAAGCTAAAATGACAGCG
ATTTAAATACATCCCATGTTAAGGTTAATC	GTCTAGAAAATGGCAAGTTACAATAAATAATCCTGT
ATTTAAATACATCCCATGTTAAGGTTAATC	GAAATAGTCAAAATTATCATAGCACTTTTGCTATG
ATTTAAATACATCCCATGTTAAGGTTAATC	ACTCAAGATAATCATCATGAACATTTACTATATTT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATATTGGACATGAATGGTTCTGAACCGATTCTAAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CTAAAGCTACAAAAAAGCGACAAGCCAAAACCAT
ATTTAAATACATCCCATGTTAAGGTTAATC	CAGATTGTGGCTAGTAGTCAGGTGTTTGGTAGAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTATATGATGCTATAAAAGGGGGTGCTAGTAAC
ATTTAAATACATCCCATGTTAAGGTTAATC	AGTGTGCTAAAGAATAATTTAGATGGATTAACAAC
ATTTAAATACATCCCATGTTAAGGTTAATC	GTTGGATCACGAATACAGTTTTAATTTTAAAAGTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCTAGGTTCTTTTCTTTTTGAAAGAAGGTGATAAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	GCTTACAAGTGTTAGGCAGTATGATCAAGAAGATTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATACTCTGACATTATTTAGCTGGCCTTATATCCA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAAATTGGCCGAAAGCAGTAAGGGTAATAGTGT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAGATTAAAATGGGATAAAGAAAAGTTCACTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGAAGAACAAATGAGATAACTTTTGGGTTTATAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATAAGCAGAATAAACTTTGTTTTGAACGAGAT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTTACAAGTGTTAGGCAGTATGATCAAGAAGATTA
ATTTAAATACATCCCATGTTAAGGTTAATC	AGAATCCTTAAAATCAGAAATATTATCACCAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAATAGTCTTACCATCTAAAGAAACACTATAAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	GCAACACAGACCTATACATAAATCATTTTTAAATAG
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTGTTCCCCAAAAACCGTCGTCAGGTTCCCAAGAC
ATTTAAATACATCCCATGTTAAGGTTAATC	ATATTATCTCATATTTATTATTTTTAAATTCTTCA
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTGATAATTATAAGGGACAAGATGTGATTGTGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTACGAAGAAGATGGTGAAATAACTTCCTATGTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTAAAGAGGCTTTTAATAACTTTTCTAATACTGG
ATTTAAATACATCCCATGTTAAGGTTAATC	TGTCCTACTGGAATATTTCCATTGTATTGCTTGCTT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTAGTTCTAATACTACGGAGGGTTAATATGTTAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAAGCAGCAGGAAAAGAGGATAAATTTAAGGAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGAAGAAAACCCTTTAATAATCTCAGTTATCTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	AGGTTTTAGATCAGTGATTGCAATAGCTTGTTTC
ATTTAAATACATCCCATGTTAAGGTTAATC	CGGACAGTTTGAAAATAACTATATAATGTTTCAAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTGATACGAAATTTTATTGTGTATCAGATTGAAAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATTAAATATATCCGTTTTTAAATACCATATAAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAGACTCTTTCTATGGTAGAGTATATCACTAGAG
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAAACCTTTCCCACTGCTGTAGCAGATGCTTTTTC
ATTTAAATACATCCCATGTTAAGGTTAATC	AGTCCTTTTCATATTGTTGATAATTCCCCTATAGC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTATTAGGAATTGAAGATGTAAGTAAATTAGCGTAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTGAACTATATTTCAAAAAAGGAGTAATAAAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTTGAAGTCCTACCCTGCAAGCTTGTAATTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TATTGTGTTGACGATAGAATTTACTTCAGATCTAG
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTAAGTAATACTTCATTGTCTTTAAACTCTTTCA
ATTTAAATACATCCCATGTTAAGGTTAATC

>CP025746|6|6|4121618-4125158|CRISPRCasFinder
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGTCTTACCTTGACCATAAAGACCAACAACAAGA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGGCTTTAAGGATAGATTTTTCTTTGTAACAAA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAAGGAAGTATTTTCTATAGAAGGAGCGGTCAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAAAATGGCTTCTAAGGCAGTAATACCAATGGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTGTATGCTCTCTTATTAGCTCCAGCCAATGTAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CTATTAAACCTTGCTTATATTCACTTCTAAGGGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAATGAAGTGTGTTTCAAGAGTTCTGTATTTTGA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAGGAATAGAAGTATATCCTTATATAGAGCCATA
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTGCAAGCCTAATAATGTAGTATTGGCTTTTAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAATACCACCTTTTGCATACCATTCTACTCCAAGG
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATGCTAGAACTTAAAAATAATATGTTTAACGC
ATTTAAATACATCCCATGTTAAGGTTAATC	AGTGTAGATCAAAAAGAAGTACACTTCGTTACATA
ATTTAAATACATCCCATGTTAAGGTTAATC	TTATAAAATTAATTATAAAGCTAAAATGACAGCG
ATTTAAATACATCCCATGTTAAGGTTAATC	GTCTAGAAAATGGCAAGTTACAATAAATAATCCTGT
ATTTAAATACATCCCATGTTAAGGTTAATC	GAAATAGTCAAAATTATCATAGCACTTTTGCTATG
ATTTAAATACATCCCATGTTAAGGTTAATC	ACTCAAGATAATCATCATGAACATTTACTATATTT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATATTGGACATGAATGGTTCTGAACCGATTCTAAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CTAAAGCTACAAAAAAGCGACAAGCCAAAACCAT
ATTTAAATACATCCCATGTTAAGGTTAATC	CAGATTGTGGCTAGTAGTCAGGTGTTTGGTAGAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTATATGATGCTATAAAAGGGGGTGCTAGTAAC
ATTTAAATACATCCCATGTTAAGGTTAATC	AGTGTGCTAAAGAATAATTTAGATGGATTAACAAC
ATTTAAATACATCCCATGTTAAGGTTAATC	GTTGGATCACGAATACAGTTTTAATTTTAAAAGTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TCTAGGTTCTTTTCTTTTTGAAAGAAGGTGATAAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	GCTTACAAGTGTTAGGCAGTATGATCAAGAAGATTA
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATACTCTGACATTATTTAGCTGGCCTTATATCCA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAGAAATTGGCCGAAAGCAGTAAGGGTAATAGTGT
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAGATTAAAATGGGATAAAGAAAAGTTCACTTA
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGAAGAACAAATGAGATAACTTTTGGGTTTATAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATAAGCAGAATAAACTTTGTTTTGAACGAGAT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTTACAAGTGTTAGGCAGTATGATCAAGAAGATTA
ATTTAAATACATCCCATGTTAAGGTTAATC	AGAATCCTTAAAATCAGAAATATTATCACCAATA
ATTTAAATACATCCCATGTTAAGGTTAATC	AAATAGTCTTACCATCTAAAGAAACACTATAAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	GCAACACAGACCTATACATAAATCATTTTTAAATAG
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTGTTCCCCAAAAACCGTCGTCAGGTTCCCAAGAC
ATTTAAATACATCCCATGTTAAGGTTAATC	ATATTATCTCATATTTATTATTTTTAAATTCTTCA
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTGATAATTATAAGGGACAAGATGTGATTGTGTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTACGAAGAAGATGGTGAAATAACTTCCTATGTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TTAAAGAGGCTTTTAATAACTTTTCTAATACTGG
ATTTAAATACATCCCATGTTAAGGTTAATC	TGTCCTACTGGAATATTTCCATTGTATTGCTTGCTT
ATTTAAATACATCCCATGTTAAGGTTAATC	CTAGTTCTAATACTACGGAGGGTTAATATGTTAAT
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAAGCAGCAGGAAAAGAGGATAAATTTAAGGAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAGAAGAAAACCCTTTAATAATCTCAGTTATCTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	AGGTTTTAGATCAGTGATTGCAATAGCTTGTTTC
ATTTAAATACATCCCATGTTAAGGTTAATC	CGGACAGTTTGAAAATAACTATATAATGTTTCAAGT
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTGATACGAAATTTTATTGTGTATCAGATTGAAAA
ATTTAAATACATCCCATGTTAAGGTTAATC	CCATTAAATATATCCGTTTTTAAATACCATATAAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TAAGACTCTTTCTATGGTAGAGTATATCACTAGAG
ATTTAAATACATCCCATGTTAAGGTTAATC	AAAAACCTTTCCCACTGCTGTAGCAGATGCTTTTTC
ATTTAAATACATCCCATGTTAAGGTTAATC	AGTCCTTTTCATATTGTTGATAATTCCCCTATAGC
ATTTAAATACATCCCATGTTAAGGTTAATC	TTATTAGGAATTGAAGATGTAAGTAAATTAGCGTAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTGAACTATATTTCAAAAAAGGAGTAATAAAAG
ATTTAAATACATCCCATGTTAAGGTTAATC	TTTTTGAAGTCCTACCCTGCAAGCTTGTAATTTT
ATTTAAATACATCCCATGTTAAGGTTAATC	TATTGTGTTGACGATAGAATTTACTTCAGATCTAG
ATTTAAATACATCCCATGTTAAGGTTAATC	ATTAAGTAATACTTCATTGTCTTTAAACTCTTTCA
ATTTAAATACATCCCATGTTAAGGTTAATC

Protein	Signature genes	Signature genes Name	Protein_function
CP025746.1\|QAA33510.1\|4128247_4128784_-\|DUF4256-domain-containing-protein	unknown	unknown	gnl\|CDD\|339073
CP025746.1\|QAA33505.1\|4119773_4120217_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379669
CP025746.1\|QAA33508.1\|4126821_4127256_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|143393
CP025746.1\|QAA33506.1\|4120254_4121529_+\|transposase	unknown	unknown	gnl\|CDD\|225995
CP025746.1\|QAA33502.1\|4116968_4118435_+\|transposase	unknown	unknown	gnl\|CDD\|226950
CP025746.1\|QAA33511.1\|4129766_4130303_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|99749
CP025746.1\|QAA33509.1\|4127524_4127848_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP025746.1\|QAA33498.1\|4111118_4112879_-\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	cas8b1	mkCas0106_cas8b1_CAS-I-B	gnl\|CDD\|188234
CP025746.1\|QAA33507.1\|4125478_4126360_-\|AraC-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225117
CP025746.1\|QAA33499.1\|4112893_4113586_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	cd09652_cas6_CAS-I:CAS-III	gnl\|CDD\|273848
CP025746.1\|QAA33500.1\|4113972_4114104_-\|endoribonuclease-L-PSP	unknown	unknown	unknown
CP025746.1\|QAA33516.1\|4135064_4135928_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223740
CP025746.1\|QAA33501.1\|4116291_4116534_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|316753
CP025746.1\|QAA33513.1\|4132028_4132220_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33515.1\|4133138_4134716_-\|AAA-family-ATPase	unknown	unknown	gnl\|CDD\|373105
CP025746.1\|QAA33497.1\|4110175_4111126_-\|CRISPR-associated-protein	cas7b	pfam05107_cas7b_CAS-I-B:CAS-I-C	gnl\|CDD\|377458
CP025746.1\|QAA33514.1\|4132600_4133047_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33503.1\|4118437_4119184_+\|DNA-replication-protein	unknown	unknown	gnl\|CDD\|181681
CP025746.1\|QAA33504.1\|4119201_4119648_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA33512.1\|4130853_4131747_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|173926

Protein	Function_ID	Function_description	E-value
CP025746.1\|QAA33510.1\|4128247_4128784_-\|DUF4256-domain-containing-protein	gnl\|CDD\|339073	pfam14066, DUF4256, Protein of unknown function (DUF4256). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 190 amino acids in length.	2.14512e-134
CP025746.1\|QAA33505.1\|4119773_4120217_+\|hypothetical-protein	gnl\|CDD\|379669	pfam14690, zf-ISL3, zinc-finger of transposase IS204/IS1001/IS1096/IS1165.	1.68789e-08
CP025746.1\|QAA33508.1\|4126821_4127256_-\|hypothetical-protein	gnl\|CDD\|143393	cd05403, NT_KNTase_like, Nucleotidyltransferase (NT) domain of Staphylococcus aureus kanamycin nucleotidyltransferase, and similar proteins. S. aureus KNTase is a plasmid encoded enzyme which confers resistance to a wide range of aminoglycoside antibiotics which have a 4'- or 4''-hydroxyl group in the equatorial position, such as kanamycin A. This enzyme transfers a nucleoside monophosphate group from a nucleotide (ATP,GTP, or UTP) to the 4'-hydroxyl group of kanamycin A. This enzyme is a homodimer, having two NT active sites. The nucleotide and antibiotic binding sites of each active site include residues from each monomer. Included in this subgroup is Escherichia coli AadA5 which confers resistance to the antibiotic spectinomycin and is a putative aminoglycoside-3'-adenylyltransferase. It is part of the aadA5 cassette of a class 1 integron. This subgroup also includes Haemophilus influenzae HI0073 which forms a 2:2 heterotetramer with an unrelated protein HI0074. Structurally HI0074 is related to the substrate-binding domain of S. aureus KNTase. The genes encoding HI0073 and HI0074 form an operon. Little is known about the substrate specificity or function of two-component NTs. The characterized members of this subgroup may not be representive of the function of this subgroup. This subgroup belongs to the Pol beta-like NT superfamily. In the majority of enzymes in this superfamily, two carboxylates, Dx[D/E], together with a third more distal carboxylate, co-ordinate two divalent metal cations involved in a two-metal ion mechanism of nucleotide addition. These carboxylate residues are conserved in this subgroup.	3.27948e-12
CP025746.1\|QAA33506.1\|4120254_4121529_+\|transposase	gnl\|CDD\|225995	COG3464, COG3464, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	9.66858e-16
CP025746.1\|QAA33502.1\|4116968_4118435_+\|transposase	gnl\|CDD\|226950	COG4584, COG4584, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	1.10895e-21
CP025746.1\|QAA33511.1\|4129766_4130303_+\|hypothetical-protein	gnl\|CDD\|99749	cd06260, DUF820, Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.	3.40964e-25
CP025746.1\|QAA33509.1\|4127524_4127848_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	1.29535e-14
CP025746.1\|QAA33498.1\|4111118_4112879_-\|type-I-B-CRISPR-associated-protein-Cas8b/Csh1	gnl\|CDD\|188234	TIGR02591, cas_Csh1, CRISPR-associated protein Cas8b/Csh1, subtype I-B/HMARI. This domain is found in the C-terminal 2/3 of a family of CRISPR associated proteins of the Hmari subtype. Except for the two sequences from halophilic archaea this domain contains a pair of CXXC motifs.	1.08712e-21
CP025746.1\|QAA33507.1\|4125478_4126360_-\|AraC-family-transcriptional-regulator	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.75309e-33
CP025746.1\|QAA33499.1\|4112893_4113586_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|273848	TIGR01877, CRISPR-associated_endoribonuclease_Cas6_1, CRISPR-associated endoribonuclease Cas6. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This broadly distributed, highly divergent Cas family is now characterized as an endoribonuclease that generates guide RNAs for host defense against phage and other invaders. The family contains a C-terminal motif GXGXXXXXGXG, where the each X between two Gly is hydrophobic and the spacer XXXXX contains (usually) one Arg or Lys. The seed alignment for the current version of this model has gappy columns removed. Members of this protein family are found associated with several different CRISPR/cas system subtypes, and consequently we designate this family Cas6.	7.95477e-16
CP025746.1\|QAA33503.1\|4118437_4119184_+\|DNA-replication-protein	gnl\|CDD\|181681	PRK09183, PRK09183, transposase/IS protein; Provisional.	6.63813e-71
CP025746.1\|QAA33501.1\|4116291_4116534_-\|hypothetical-protein	gnl\|CDD\|316753	pfam14261, DUF4351, Domain of unknown function (DUF4351). This domain is found in bacteria, and is approximately 60 amino acids in length.	3.89521e-05
CP025746.1\|QAA33515.1\|4133138_4134716_-\|AAA-family-ATPase	gnl\|CDD\|373105	pfam14516, AAA_35, AAA-like domain. This family of proteins are part of the AAA superfamily.	2.80189e-05
CP025746.1\|QAA33497.1\|4110175_4111126_-\|CRISPR-associated-protein	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	5.30926e-48
CP025746.1\|QAA33516.1\|4135064_4135928_-\|hypothetical-protein	gnl\|CDD\|223740	COG0668, MscS, Small-conductance mechanosensitive channel [Cell envelope biogenesis, outer membrane].	8.06302e-10
CP025746.1\|QAA33512.1\|4130853_4131747_-\|hypothetical-protein	gnl\|CDD\|173926	cd04301, NAT_SF, N-Acyltransferase superfamily: Various enzymes that characteristically catalyze the transfer of an acyl group to a substrate. NAT (N-Acyltransferase) is a large superfamily of enzymes that mostly catalyze the transfer of an acyl group to a substrate and are implicated in a variety of functions, ranging from bacterial antibiotic resistance to circadian rhythms in mammals. Members include GCN5-related N-Acetyltransferases (GNAT) such as Aminoglycoside N-acetyltransferases, Histone N-acetyltransferase (HAT) enzymes, and Serotonin N-acetyltransferase, which catalyze the transfer of an acetyl group to a substrate. The kinetic mechanism of most GNATs involves the ordered formation of a ternary complex: the reaction begins with Acetyl Coenzyme A (AcCoA) binding, followed by binding of substrate, then direct transfer of the acetyl group from AcCoA to the substrate, followed by product and subsequent CoA release. Other family members include Arginine/ornithine N-succinyltransferase, Myristoyl-CoA: protein N-myristoyltransferase, and Acyl-homoserinelactone synthase which have a similar catalytic mechanism but differ in types of acyl groups transferred. Leucyl/phenylalanyl-tRNA-protein transferase and FemXAB nonribosomal peptidyltransferases which catalyze similar peptidyltransferase reactions are also included.	8.98587e-05

>CP025746.1|QAA33506.1|4120254_4121529_+|transposase
MKKRSTYGTVMIDIETKHIVDILDSRELDNVVEWLKTYPNLEVISRDGAQTYATAIKKAHPKSIQISDRFHILKNLTDYCKKYLTKILSFNVKLEKQTSRNLKQETAYGNTRKLNRINQANILYDKGKSPKEIGLELKMDIRTVKKYLSLDKSELILKENDSPNLNHKENVTKKEKNLNQVRKLHKQGYGIREISRETGISRQTVRRYLDSNDCAVHGTFGISKKSPLSQFHSIIDDLLTKGYTFRIIEEHLRLNGYTGSASAIRMYSTRKRRLIKQVIDCNYLKYELIDRKYLIKLLYKPLDKVKAISIEQLEVICKEYPILSKIYLLVDSFKKILFSKKPTALDTWLEDAKKLNISEINSFIKGLTKDIAAVKNAIMYKYSNGLAEGSVNKIKVIKRIMYGRCTFETLRKKVLSYERLRTFN
>CP025746.1|QAA33505.1|4119773_4120217_+|hypothetical-protein
MDELIKLLDSNLQYIKHELVDDTIYIEVSSNRKSVSCPYCGEKSDKAHSWYKKSFQDLPMQNKKVVIILNNRKMFCNNQSCSKKTFAETFEFLAPNAKKSSRLENEIINISVNVSSLAAERIIRNRIANIGKSTICNLLKKRNSYNR
>CP025746.1|QAA33504.1|4119201_4119648_+|hypothetical-protein
MKRKHDHRDLDYMKFIEIFNTEDRKSARDYVKEHIPFNYDYFIKLVKRYTGYQYNKESKKFELLKATESQFISIDDLLNKPKDNATSIVASIPKAIYYKDPLDELNLDLLQDRLIELSKYIKIKSSTKSIEINLIRLREGGYDIELIS
>CP025746.1|QAA33503.1|4118437_4119184_+|DNA-replication-protein
MKSTINTSPDHISRLLKQFKLIDIQTNYESEIAYAIENNIGHREFLVRLLEIEAEGKRERNVEKNIKAARFEGIKTLDGFDFSFPEKINESKIRDLETLSFIENKENVILIGPPGVGKSHIGISLGVLACKKGFKVLFTTAQEFIDNLYKSYMNGTLDSTFKAIRKIEVLIIDELGHFQTDKEKESIFFQIIRQRYEKGSLIITTNVPLGNWDKIFSSKLAATAILDRLIHHCHLISITGDSYRVKGK
>CP025746.1|QAA33502.1|4116968_4118435_+|transposase
MKDVKDWITIKRMYERGVPIRQIAKELKVSRNTVKRLIKLDEEPKYKKRKYSTKIDYFHEDIKMWYLEPEYNFIGTRIFRELKRLGYNGSISPLYRYLNSLKEEKRSLPLKATKRIETPLGDQAQFDWAEYLMWVGGEKIKVYCYSLILAASRKKAIIFARSCDGEAIYESIHLLFKRIGGVTKELLIDNPKALVVSNHPEEEVNFNINALRLAQHLGISLNACNPYRPRTKGKIEKPFQYIEEQFVKGNKFDSMTHLNKAAEAFIEDSNNLKHGTTLRITNEYFTEEIPYLAPVKNKPFIITDLKERKVSLDSFISVDAVKYSVPIEYVGKKVVFRITLGYKLEVYNSALDVIATHEIITQKGKMVTVDDHYGALNNIAPKSIPEIVRQFESTFPSGSLFYKNCIAHLNQPSYHLRKIIKLKELYDNDSLELLLRYCIKENIYNINDIKNILKTKYLDIVKGISAKDELLTLSETSRELSYYEEGQF
>CP025746.1|QAA33501.1|4116291_4116534_-|hypothetical-protein
MTEIGKMIRDEGLKEGRQEGLKEGMEIGKVELLIKQLIKKFKKIPSEYEEKIKKLPVTTIDVIATDIFVLEFVKDLDEYF
>CP025746.1|QAA33500.1|4113972_4114104_-|endoribonuclease-L-PSP
MFRYFCQVLLTKKWGISIKKESLSQINQGLKIPRDYCRQLEDN
>CP025746.1|QAA33499.1|4112893_4113586_-|CRISPR-associated-endoribonuclease-Cas6
MEVFEVKLKLFLLKDVQFTEIQSKISSFIDMGLAKDEKYLEFHNENKFKNYCFDSLYPIEKDKIYNSGKIYTLTLRTVGEDLAKFFLERLKNEYDENFKGLTAEVRIVPKKHIEKIYSITPMLIKNDCGYWKGKITLDEFERRLKENLIKKYNSIANEKIDEDFQLYTSIEFKNRKPISTSYKQIKLLGDKISINISDDKRAQDLAYMSLGTGIAEMNPRGYGFVNYRWL
>CP025746.1|QAA33498.1|4111118_4112879_-|type-I-B-CRISPR-associated-protein-Cas8b/Csh1
MLKECLEVFKNQLEENTEKLITDSYIPSDGTYLLVEPIGDSYEIKETINIKLDKKTREVDKSNEFFQYICEADYNSKLIDMNKPIDGKKIIHSNNYLSFFIKKESLLIDPATKERKLTEERIDEYYAILSNPYLKYSKGKGKSLYETVENEIGQVDIERLEKIRAWIKENIFNLEIDITGKDYLKIFFRYPIEDYVKEGKRYLIPNIYNSNDFNVNIGKVIYGLPNDNMGLNAKKPYLENKSRKTKVPYLVDNEEVLLQKKFFDYLMNFAAVGKVNIYIGKEVKGYKNGDLPEEDFQGIFLRIKKGKEVEVHDFDSIPSYKVELPKKFNLVNVLDADLDKLGLEGYKRYSNRLKMQELVDDILFSNFLKNNYFTESKDIGTNDNSLKNNLLISRGGLFNWFHKGVDSGVAKVLERVSLSLVKNSVLKGSYMDKKACHQFNLRWSLINYFEGGENMADIIKNLKENLKNKINSKETESIESDNEYFFAIGQLVNFFLSKSKGKKKPHSLANPFINAKENKFLKEKLMALYKKYNYDIEKNGKRFNNLYGMIVSYETEAKVNQDMILAGYLHSSLIYESDKKEDNINE
>CP025746.1|QAA33497.1|4110175_4111126_-|CRISPR-associated-protein
MNKRVYGVIGISSIMANWNADFTGYPKTTSSGDTFGSDKALKYPMKKMWENNGEKVLYIKSMKFSKDKKGEVQLVPRALKERYEYIFGVEDLKKCKSAEEVLKNLFSAIDVKNFGATFAEEGNNISITGAVQIGQGFNKYDGTNPEEQQILSPFRDGSKDSVKPDSEEAKNSTLGTKIVSNEAHYFYPFTINPLTYKEYKELGVTEGYTEEDYIKFKETAVVSATSFATNSKVGCENEFALFVETEENLYLPNLSEYIDFTKGKDKNTIAIKCSELLNSVGDRIKNVEIYYNPYTTIIESEIKGAKQFNIFTQKEV
>CP025746.1|QAA33507.1|4125478_4126360_-|AraC-family-transcriptional-regulator
MVHIEEIQAALDYIEMNLHEELTLDDIAKAVGFSKFYFHRVFQREVGTSLYNYVRKRRLTMAASLLLNTNIPILDIALTYRFESQEAFTRAFKSVYQLPPGRYRTAIKNLIVGGVNMSDQSKVKGWIFTGTAPEKYKFEMDNKIYHMGSRSATICSVGDEFSYEDYSSIMQQISAKNFIGKRMRFSGFVKTEEVEQWCGLWMRLDSAQGVTLKLDNMQNRPIKGTTEWNYYYCVMDIPQDAAVINIGVLLTEKGKIWFDNADFQEVDKSIPTTEYVPEEIFPDNIVNPSFEEV
>CP025746.1|QAA33508.1|4126821_4127256_-|hypothetical-protein
MFNHNRYESSKDKTSILNIINSDAFKTLFTDKGINNVIIFGSLANGEFTAESDVDIAIISKTPISFNDELILTQNLEELLDRDIDLIDINDDNINNLVKISALNGKFIVLSDSILEETIEFYDNLFRENEEFWRILDREVLGIE
>CP025746.1|QAA33509.1|4127524_4127848_-|thioredoxin
MVKVDNGEDIKNILTTNEMVILYFSNTTCGACTAIKNKVLSILRSYPEVKLIDINGEEKRELAALNDVFSFPLLILYVAGKEVVRVGRNLSIIELENTIKRYYEMLF
>CP025746.1|QAA33510.1|4128247_4128784_-|DUF4256-domain-containing-protein
MSNEELINILKNRFEKNISRHKDIEWAKVQAKLEANTKKLSSLDEMEATGGEPDVVEYDESTDEYIFYDCSPESPKGRRSLCYDGEALEARKENKPKSSALDMAAAMGIELLTEHQYRHLQSIGNFDMKTSSWLKTPPEIRKLGGSIFGDFRYGNVFIYHNGAESYYAGRGFRGVLRV
>CP025746.1|QAA33511.1|4129766_4130303_+|hypothetical-protein
MSNLDYSLDNITVEWINDIKYMSPSPHPNHGIVYSELFNSFYNYLKGKNFKVFPHKTDLCLSDPNEPIKINDLKKPIVPDLFVVCDKKFELVGNNIVSIPDYICEIVSPSSIKMDNEIKRDLYLSKGVKEYWIVNYLDNSIKVYFDNKETTFSFDDNVKVNIFDDLTICLKDIELFEI
>CP025746.1|QAA33512.1|4130853_4131747_-|hypothetical-protein
MSIIFRNYTDKPGITEDYHKVRAFFIKLGYAEFTYTRWDWMITHGYLDRSAVGKIGVWEDQGEIVGLATFDCQLGKGFCLTLAEYGYLKKEMLTYAKENLCKDGNFGVVISDDDLSFQDIAAELGFCATPEKENDAIFYLDKTETSYQLPEGFYITDMKDNYDPYQYLRVLWKGFNHELDGEGEFEFSEKNRQLVMEEMIRPNVDLKLKVAVVAPDGNFAAYCGMWYDPKAGYAVIEPVATDPKYRRIGLGRAAVLEGISRVGKLGAKKAIVGSSQQFYYSIGLRPFKTSTIWRQKI
>CP025746.1|QAA33513.1|4132028_4132220_+|hypothetical-protein
MKKINKIWQPIFYYICTICMLVIAIFNYNKLKDQANLVLQLLLVIIFIVNSIVATVRYKKSLK
>CP025746.1|QAA33514.1|4132600_4133047_+|hypothetical-protein
MFQTLLIFGLFYLLFTGVISIVLYIILAYSLYKMAVRQGLENSWIAWIPIAQLYILGKLIRTVQVFDWEIPSAEVILPVAGIIVLIFNHVHFLGGLLSLANYILVLFALNKLYKLYRPEKATLYTVLSIFGVTVPFILLSLKDYDQIS
>CP025746.1|QAA33515.1|4133138_4134716_-|AAA-family-ATPase
MKKKFNVTGTCIPKMHYMVDTSKKIDEIMEFIEDGEYFIINRPRQYGKTTTLFLLENRLNQDQDYLVISISFEGVGDLIFQDEMKFSKAFLKIVKRAIEFNDEKFTDFMENENPENLDDISTFITKLVKKANKKIILMIDEVDKSSNNQLFLSFLGMLRNKYLLRNTGKDYTFHSVILAGVHDVKTLKIKIRSDEEHKYNSPWNIAADFDVDMSFSSEEIKTMLDDYVDIKGVSLNKEYFSDRLYYYTSGYPFLVSKLCKIIDEKIMESDNLTWDNEYMDLAVKEILRESNTNFDSLIKNIENNADLKELVKRIILDNDDITYVTDNPIINLGIIYGIFKNENGKVKINNKIYEQRIYNYMSSLVETSIKIGVYNQRSAYIKEDNSLDIRKILIKFSEFMKHERSEKRETFLEADGRLLFLAFISPIINGTGFAFKEVQGGEEKRFDIVLTYNKKMYIIELKLWRGEEYHSKGLTQLGEYLEQYSLNEGYLLVFDFRKEQSKKGDIEEVTVASKDSVKRIIEVYC
>CP025746.1|QAA33516.1|4135064_4135928_-|hypothetical-protein
MAAKKKGKQLLVAVVILCLIGALVSMALFQKKFGMDAVNVKAFKITSELLFAFIFTIVVTKVVQILIMNFGTNKMITEFVGSVIVCILFFNMTFNSLVAMGVNPKALKSISSVAALIIGIGSKKLIANLLAGVFLAVEDLIHPFDFIVIKKYAGLVVDKNLFYVTLEDGDENRKKIKSKDFVNFNNSAYNLSTINIDAKVSVKVPFKEIEEIIKAVLENSEEKYPSFVEKPEFQGIEKFIDGKMHLRFSGRCKGKDRKKSVVSLTVEIAKQFTKKDVNIILPQIELM

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Crispr_ID: CP025746_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025746_7

4832848-4832993

Orphan

Consensus_repeat	Method
TAGATGTACCACTTCATAATAAAATTTATATTATCAAACTCTCCTCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025746_7

>merge|CP025746|7|4832848-4832993|CRISPRCasFinder
TAGATGTACCACTTCATAATAAAATTTATATTATCAAACTCTCCTCTCAAAACCCAGAGGAGTTTTGATAATTGATTTCGGACTGAAGTGTTACATCTTTAGATGTACCACTTCATAATAAAATTTATATTATCAAATTCTCCTCT

>CP025746|7|7|4832848-4832993|CRISPRCasFinder
TAGATGTACCACTTCATAATAAAATTTATATTATCAAACTCTCCTCT	CAAAACCCAGAGGAGTTTTGATAATTGATTTCGGACTGAAGTGTTACATCTT
TAGATGTACCACTTCATAATAAAATTTATATTATCAAATTCTCCTCT

Protein	Signature genes	Signature genes Name	Protein_function
CP025746.1\|QAA34038.1\|4836361_4837291_-\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|213356
CP025746.1\|QAA34037.1\|4834717_4836121_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|235018
CP025746.1\|QAA34035.1\|4832203_4832761_-\|GTP-cyclohydrolase-I-FolE	unknown	unknown	gnl\|CDD\|236472
CP025746.1\|QAA34029.1\|4828117_4828570_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA34039.1\|4837352_4838264_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP025746.1\|QAA34033.1\|4830714_4831521_-\|dihydropteroate-synthase	unknown	unknown	gnl\|CDD\|238380
CP025746.1\|QAA34034.1\|4831584_4832058_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224336
CP025746.1\|QAA34026.1\|4824174_4825425_-\|DUF445-domain-containing-protein	unknown	unknown	gnl\|CDD\|377281
CP025746.1\|QAA34032.1\|4829872_4830697_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-pyrophosphokinase	unknown	unknown	gnl\|CDD\|223872
CP025746.1\|QAA34041.1\|4838826_4839015_+\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA34040.1\|4838279_4838477_-\|DUF896-family-protein	unknown	unknown	gnl\|CDD\|368690
CP025746.1\|QAA34044.1\|4840286_4841453_-\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|223503
CP025746.1\|QAA34030.1\|4828678_4829122_-\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA34028.1\|4826959_4827997_-\|pyruvate-kinase	unknown	unknown	gnl\|CDD\|223545
CP025746.1\|QAA34042.1\|4839158_4839554_-\|hypothetical-protein	unknown	unknown	unknown
CP025746.1\|QAA34043.1\|4839567_4839825_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|184235
CP025746.1\|QAA35377.1\|4833078_4833927_+\|phosphatase	unknown	unknown	gnl\|CDD\|223686
CP025746.1\|QAA34031.1\|4829316_4829781_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276947
CP025746.1\|QAA34036.1\|4834230_4834515_-\|holin	unknown	unknown	gnl\|CDD\|227833
CP025746.1\|QAA34027.1\|4826468_4826885_-\|bacteriohemerythrin	unknown	unknown	gnl\|CDD\|274154

Protein	Function_ID	Function_description	E-value
CP025746.1\|QAA34038.1\|4836361_4837291_-\|dihydroorotate-dehydrogenase	gnl\|CDD\|213356	cd12822, TmCorA-like, Thermotoga maritima CorA-like family. This family belongs to the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. Members of the Thermotoga maritima CorA_like family are found in all three kingdoms of life. It is a functionally diverse family, in addition to the CorA Co2+ transporter from the hyperthermophilic Thermotoga maritima, it includes three Saccharomyces cerevisiae members: two plasma membrane proteins, the Mg2+ transporter Alr1p/Swc3p and the putative Mg2+ transporter, Alr2p, and the vacuole membrane protein Mnr2p, a putative Mg2+ transporter. Thermotoga maritima CorA forms funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport by Alr1p. Natural variants in this signature sequence may be associated with the transport of different divalent cations. The functional diversity of the MIT superfamily may also be due to minor structural differences regulating gating, substrate selection, and transport.	1.05024e-81
CP025746.1\|QAA34037.1\|4834717_4836121_-\|aminopeptidase	gnl\|CDD\|235018	PRK02256, PRK02256, putative aminopeptidase 1; Provisional.	0
CP025746.1\|QAA34035.1\|4832203_4832761_-\|GTP-cyclohydrolase-I-FolE	gnl\|CDD\|236472	PRK09347, folE, GTP cyclohydrolase I; Provisional.	2.46818e-113
CP025746.1\|QAA34039.1\|4837352_4838264_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	2.80474e-158
CP025746.1\|QAA34033.1\|4830714_4831521_-\|dihydropteroate-synthase	gnl\|CDD\|238380	cd00739, DHPS, DHPS subgroup of Pterin binding enzymes. DHPS (dihydropteroate synthase), a functional homodimer, catalyzes the condensation of p-aminobenzoic acid (pABA) in the de novo biosynthesis of folate, which is an essential cofactor in both nucleic acid and protein biosynthesis. Prokaryotes (and some lower eukaryotes) must synthesize folate de novo, while higher eukaryotes are able to utilize dietary folate and therefore lack DHPS. Sulfonamide drugs, which are substrate analogs of pABA, target DHPS.	5.78286e-128
CP025746.1\|QAA34034.1\|4831584_4832058_-\|hypothetical-protein	gnl\|CDD\|224336	COG1418, COG1418, Predicted HD superfamily hydrolase [General function prediction only].	1.2704e-12
CP025746.1\|QAA34026.1\|4824174_4825425_-\|DUF445-domain-containing-protein	gnl\|CDD\|377281	pfam04286, DUF445, Protein of unknown function (DUF445). Predicted to be a membrane protein.	8.14005e-78
CP025746.1\|QAA34032.1\|4829872_4830697_-\|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-pyrophosphokinase	gnl\|CDD\|223872	COG0801, FolK, 7,8-dihydro-6-hydroxymethylpterin-pyrophosphokinase [Coenzyme metabolism].	4.545e-65
CP025746.1\|QAA34040.1\|4838279_4838477_-\|DUF896-family-protein	gnl\|CDD\|368690	pfam05979, DUF896, Bacterial protein of unknown function (DUF896). In B. subtilis, one small SOS response operon under the control of LexA, the yneA operon, is comprised of three genes: yneA, yneB, and ynzC. This family consists of several short, hypothetical bacterial proteins of unknown function. These proteins are mainly found in gram-positive firmicutes. Structures show that the N-terminus is composed of two alpha helices forming a helix-loop-helix motif. The structure of ynzC from B. subtilis forms a trimeric complex. Structural modelling suggests this domain may bind nucleic acids. This family is also known as UPF0291.	1.40628e-15
CP025746.1\|QAA34044.1\|4840286_4841453_-\|MBL-fold-metallo-hydrolase	gnl\|CDD\|223503	COG0426, FpaA, Uncharacterized flavoproteins [Energy production and conversion].	1.31351e-146
CP025746.1\|QAA34028.1\|4826959_4827997_-\|pyruvate-kinase	gnl\|CDD\|223545	COG0469, PykF, Pyruvate kinase [Carbohydrate transport and metabolism].	4.12911e-51
CP025746.1\|QAA34043.1\|4839567_4839825_-\|hypothetical-protein	gnl\|CDD\|184235	PRK13678, PRK13678, hypothetical protein; Provisional.	6.86807e-10
CP025746.1\|QAA35377.1\|4833078_4833927_+\|phosphatase	gnl\|CDD\|223686	COG0613, COG0613, Predicted metal-dependent phosphoesterases (PHP family) [General function prediction only].	1.19966e-50
CP025746.1\|QAA34031.1\|4829316_4829781_+\|hypothetical-protein	gnl\|CDD\|276947	cd15786, CPF_1278_like, Uncharacterized protein conserved in Clostridia. This protein appears to be a member of a somewhat larger structural family conserved in Firmicutes. The 3D structure is available for one protein, CPF_1278, which has been labelled a putative lipoprotein. CPF_1278 displays structural similarity to the N-terminal domain of YycH, which plays a role in signal transduction and is found immediately downstream of the essential histidine kinase YycG. YycG forms a two-component system together with its cognate response regulator YycF. YycH functions as a modulator of YycG activity, possibly by interacting with YchI. All three molecules (YchG, YchH, and YchI) have been characterized as membrane proteins, and they may be able to form homodimers.	3.17449e-39
CP025746.1\|QAA34036.1\|4834230_4834515_-\|holin	gnl\|CDD\|227833	COG5546, COG5546, Small integral membrane protein [Function unknown].	9.50934e-09
CP025746.1\|QAA34027.1\|4826468_4826885_-\|bacteriohemerythrin	gnl\|CDD\|274154	TIGR02481, hemeryth_dom, hemerythrin-like metal-binding domain. This model describes both members of the hemerythrin (TIGR00058) family of marine invertebrates and a broader collection of bacterial and archaeal homologs. Many of the latter group are multidomain proteins with signal-transducing domains such as the GGDEF diguanylate cyclase domain (TIGR00254, pfam00990) and methyl-accepting chemotaxis protein signaling domain (pfam00015). Most hemerythrins are oxygen-carriers with a bound non-heme iron, but at least one example is a cadmium-binding protein, apparently with a role in sequestering toxic metals rather than in binding oxygen. Patterns of conserved residues suggest that all prokaryotic instances of this domain bind iron or another heavy metal, but the exact function is unknown. Not surprisingly, the prokaryote with the most instances of this domain is Magnetococcus sp. MC-1, a magnetotactic bacterium.	4.50862e-34

>CP025746.1|QAA34035.1|4832203_4832761_-|GTP-cyclohydrolase-I-FolE
MVDKEKIKQAARMIIEAIGEDVNREGLVETPDRIARMYEEIFSGIGKDAKEYLSKQFTVEGNDLVLEKDINFYSMCEHHFLPFYGKVHIAYIPNGKVTGLSKLARTVDVYAKKPQLQERLTEEIADAIMKFLDASGVMVVIEAEHMCMSMRGIKKAGSCTVTTTYRGDFANNNELKNEVLTLIRL
>CP025746.1|QAA34034.1|4831584_4832058_-|hypothetical-protein
MDKVNYILKSLKYNECLTKIRTYEADRIFCKHDLDHFLDVARIANIMVLEEKLDISKEIVYATALLHDIGRFKQYEDGTPHHEASYKIAEELLKEAGFDEREQNIVLEAIIKHRNSDENNFNKIFYRSDKLSRDCYNCKATLLCNWNEEKRNMKITY
>CP025746.1|QAA34033.1|4830714_4831521_-|dihydropteroate-synthase
MYIGSKEFVLGKRTYIMGILNLTPDSFSDGGKFNCNDNAIEHAKLMLDQGADIIDIGGESTRPNHEPVGEEEELKRVIPIIKAIRQRFDVPISIDTYKGKVAEEAIKAGANLINDVCGFKKDPYIAKVAAKYEVPCCLMHNRDNTDYENIIEDMIKELKESIDIALEAGVKRDNIILDPGIGFGKTYEQNLYVMNNLEKLNVLGYPMLLGTSRKSMIGNTLNLPTNERVEGTVATTVIGIMKKYDFVRVHDVKENKRAAVMTDAIVRG
>CP025746.1|QAA34032.1|4829872_4830697_-|2-amino-4-hydroxy-6--hydroxymethyldihydropteridine-pyrophosphokinase
MDKLYIENLEIFAKHGVFGEEKTLGQKFVISLELFFDAREAAITGDLTKSVHYGELCHKLEKEFQRESYDLIETAAEKTAEFILKEYDILKAVKVMIKKPWAPIGKHLEYAAIEIYRQWHKVFIALGSNMGDKNSNLTAAIDKLKESKHTKVIKVSNFITTEPWGYESQDKFLNGVAEISTILSPIELINYLLEVEKELKRERIIKWGPRTIDLDVLLYDDIISSEEAIVIPHPRMHERLFVIEPLAEIAPYEFHPVLRKRIFEIKEELLSKRN
>CP025746.1|QAA34031.1|4829316_4829781_+|hypothetical-protein
MKKLLSLILVLIISSTFIGCSNAQYINLKKKPSNHYYTEEMYKLISTEKFSISAFDTDVYKELHPKEEDDKILLDFVKSLKSTNFINKPDNLPDKPKFKMFIKTSKDKYVINIYDDNIISIFPWDGVFEEDFINMDKVPLAYRLDSFCKYVFNK
>CP025746.1|QAA34030.1|4828678_4829122_-|hypothetical-protein
MKYGLDIENKDISSFVNDMLMKNGHATVNFTFDKNMKFGEMLFKKALLANQTRVDLYLNIKDEVKDVDVIDVYVSNEDELLTFLHIFKRKMEEIGFQEVCIRDGSELYLCKKVEAPTVIMNIKSHLIDISKGEFCKALSECLINISS
>CP025746.1|QAA34029.1|4828117_4828570_+|hypothetical-protein
MFKQIVKLKKLWLSQCLAMRFLTLLGFTAFIHTCITIFTNGSFSASSNETIRSVMSSIFGYIFGNQIIPNNNIKNKKFQVLVAGFMAVLSLTVCIIGYWTSIDETNSAVGEIRNILFSTVGFLISRVKSDNKPDKDDAKEKDNCECDQKK
>CP025746.1|QAA34028.1|4826959_4827997_-|pyruvate-kinase
MLTIATIGPKVRTRQDIKRIIGEGANSIRINFSHCDYDNVGEIIKYIKGSFPKISIIGDIQGHKVRVGRCFDKVIKVTNDNIIYFCSEDRYSDILEFWQHRNELLVPLNIEEQDLLECSVKTVFMKDGSMEFEVLSKQSGILQCRTVCGGVIRAEKGCNLPGLNRKSKEVNKKDFKDIKFCIDSKVDIIVYSYVYDEKDIDNFIGVVKELNKEQKYNPRLWAKIETEKAINNIKLISSKVDGVVLGRGDLLPETNIYKMALYQHNFIRAMKNSSKDVIIATHVLDSLKEEEKPTVNEMNDIFYCIGGGVSGFMLTGETSVGRDPVNAIRVLKRATEFYSKVFKKS
>CP025746.1|QAA34027.1|4826468_4826885_-|bacteriohemerythrin
MLQWKDSYSVNVQEIDDQHKQLFAIAGKLMDLIKSSSEEEDRYEEIREVLNELKNYTEYHFDYEEQLLRRNGYDIVDDHKVQHEEFIGKLSDLQKQDIYIKQKNAMMNILTFLIDWISEHIVKEDIRYGKFLNEKGVF
>CP025746.1|QAA34026.1|4824174_4825425_-|DUF445-domain-containing-protein
MKIKTYQKASISLVIMLIGFIATIFFNNNSIIFLLQSGFEAGLVGGLADWFAVTALFRHPLGVPIPHTALLPKNRERITMALVSIVKDDLLSKASVIQRVEKVNFSQKVLGICRKGIYTEQFRVGLLSIIERVKNSVEVEEISIHINKYISDYLSKVDTKNVVEELVEEGLSHDYQDKLVDILIEKVREAVNREEVRREIAATSVNAVKKVQKKGMLQFTLNTVVGIVGEDKIGSTIQEFILLILKELEDIKNPTRVMLIQSINDNVRQLTDDDSFIEKIDNYKMELSSSDRFKEISLSILKDAEDKILYYFNDEVSMKENILPFIDNLLINISEDKDLIDKLEKNIRSQISTYIHTNHEKIGLLVKENIEKLDTETLIDLIEDKVGSDLQWIRINGAICGFLIGLVLGGIKLLVI
>CP025746.1|QAA35377.1|4833078_4833927_+|phosphatase
MNIKAEFHCHTTSSDGKMSPTEVVQRASIKGIQFLAITDHDNTEGIEAAIEASKTYGINIIPGIELSCNHNKESVHVLGYFRDASYKDESLQKFLRNLKNSRVERAKSIVDKLKTYFDIELDYEKVLAKGEGVVARPHIAQSIIDAGYDYSWEYIFDKIIGNDCPAYVPNKIITVEEGVALLKKYNAVVVLAHPVLLKKNTPEDLIKFGFDGLEAIYFMNFKKDEDRLISLCRNKSLLFTCGSDFHGITEGDNKHGDIGDMSIDTADFNNFMNSYNKDYCIY
>CP025746.1|QAA34036.1|4834230_4834515_-|holin
MDKSRFRNYGLWVAIAALIPMVLQGFGLDILPSNYKDIINAILSILVMAGILNDPTTAAKWFLDDKKKAKAEKSEEAYDEITQATISRENEEKK
>CP025746.1|QAA34037.1|4834717_4836121_-|aminopeptidase
MTKKVLTREFPNAWDKYSDEDVTKVFEVSERYKNFMSKCKTERECVTEFIRMAEEKGYRDIKEIISKGETLKAGDKVYANNMGKTLAMFVIGKEPLEKGLTILGAHVDSPRLDVKQNPLYEDTDLALLETHYYGGVKKYQWVAIPLAIHGVVVKKDGTVVDVVIGEDDNDPVVGISDLLIHLSADQLGKKGDKVVEGEDLNLLVGSRPIKDKDAKEKVKENILVILNEKYDITEEDFVSAELEIVPAGKARDYGLDRSMVMAYGHDDRICAFTSFEAIVKLEEVDKTCVALFVDKEEIGSVGATGMHSKFFENIVAEVMDRVGDYSELKLRRCLTNSKMLSSDVSAAFDPNYPAVMEKKNSAFFGKGVVFNKYTGSRGKGGCNDANPEFIAQIRAIMDKHNVAWQTAELGKVDQGGGGTIAYILAEYNMEVIDCGIALQNMHAPWEVASKADIYEAVRGYEAFLLEA
>CP025746.1|QAA34038.1|4836361_4837291_-|dihydroorotate-dehydrogenase
MIVYDICNNLDVVQEWELERSYYWICCNQKEVHELEVIFSKETIEECQNFRQYPRIDYYKNYTFMVFNALDNESLKIIPREIDIYLSKSFIITVYKNEVELISKLLEDIGRDKNCFILKEICKPYIILYYILDRLIINNYNIIADLETEADKIELDILKSPKSKHINKIVSLRRESYKLRKLLNPLRYIGDALLLNENNVIEEEKMYLFKNLNDKIEKLLSSMESLGQDLAMVREAYEAEIANRTNDLMKVFTIITAVFLPLQLITAIFGMSFEHIPFKYEKYAFEGLIGTMAFLVVILMGIFKWKKYL
>CP025746.1|QAA34039.1|4837352_4838264_-|HPr-kinase/phosphorylase
MGVVTVETLVKDFEFEVLVEGEKNIPITVSDINRPGLQLAGFYNYFAPERIQVIGKAEWSFLDDMGVDLRKKRVNKFFSFNVSCLVITRNLDPHEELIKAAQKNKTWVLRTSMMTTKFMSKTTIYLADKMAPETRLHGVLVDVYGIGILITGESGIGKSETALELIKRGHRLVTDDAVDIKEIDEDLIGTSPHITFGMLEVRGMGIIDVSALYGLSSVLASKEIKLIIHLEHWRDDGDYDRLGINAEFMDILGVPIRKMRVPIRPGRNIAVIIEAAAANYRYNLMSDTTPVDVIESRMSRGVD
>CP025746.1|QAA34040.1|4838279_4838477_-|DUF896-family-protein
MNIDQLIARINFLYKKSKEEGLSEEEKKEQEELRRDYIDRVKSNFKSQLNTIKPNKPSKPKNIKN
>CP025746.1|QAA34041.1|4838826_4839015_+|hypothetical-protein
MYCSRLEKRINRRKFLLNLCLNFLSPTNFFVLKLSENWDKLVVKQQKSLLKKHMIKNNFFEK
>CP025746.1|QAA34042.1|4839158_4839554_-|hypothetical-protein
MNKSGIIKFLNENELSDIQEIEYKEGLVLRFFYDFDDVELDGAKAYSNEESDYEEESAEWYSEFFLPYLNDTAIDNVTDIVDELNEEFGVETQFISYDIDSSNYSYNEFVAVFFEGDKKIDIDDVMDELGL
>CP025746.1|QAA34043.1|4839567_4839825_-|hypothetical-protein
MSDLDEKEIMSFRDENGNKVDFEAVARIFLEEQEYLILSPLEEGADEEDAFVFRVDEVEGKEEYNLVEDDNEFEAVKKEYKKLLY
>CP025746.1|QAA34044.1|4840286_4841453_-|MBL-fold-metallo-hydrolase
MSTEKIKDNIYWVGVKDAELRVFDIIMETKKGTTYNAYLIEDDKIAVVDSVKNGFYEEFKSNIKAVIGDKAIDYIVVQHTELDHSGSVIRLMEDYPEAKVVGSRAAINYLKNIVNRPFEAIEAKEDLSLGNTTLKFISAPNLHWPDTIFTYVEEKALLFTCDFTGCHYCPEGNITDSFSDDYFEEMKYYFEVIMGPFKKFVKQGLAKIDGLKIDIIAPSHGPLHVSDASKYLKLYDEWATVAPVEKNVQVFYISAYGNTEAIAKYVTEKIGEKGVRVEVHEITSMSLEKAAELIDNSSAFLIGSPTINQDAVKPSWDLLSLVNPIVNRAKPAAAFGSFGWSGEGVPMLTERLKSLKLKTIDGLKVNFVPSEEDFKNADQFVESFMSLV

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP025746_3	3.39\|4100645\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100645-4100680	36	CP025746.1	4101106-4101141	0	1.0

1. spacer 3.39|4100645|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to position: 4101106-4101141, mismatch: 0, identity: 1.0

tcgtacatatacaatatttgaaaagcacaacgagta	CRISPR spacer
tcgtacatatacaatatttgaaaagcacaacgagta	Protospacer
************************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025746_3	3.16\|4099137\|34\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099137-4099170	34	GU943034	Uncultured phage MedDCM-OCT-S08-C232 genomic sequence	2867-2900	5	0.853
CP025746_6	6.11\|4122234\|35\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4122234-4122268	35	MK448842	Streptococcus phage Javan110, complete genome	24640-24674	6	0.829
CP025746_3	3.12\|4098873\|35\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4098873-4098907	35	KX438380	Salmonella phage vB_SalM_PM10, complete genome	41304-41338	7	0.8
CP025746_3	3.12\|4098873\|35\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4098873-4098907	35	MN953776	Salmonella phage chennai, complete genome	113910-113944	7	0.8
CP025746_3	3.12\|4098873\|35\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4098873-4098907	35	MH523359	Salmonella phage vB_SalM-LPST94, complete genome	146232-146266	7	0.8
CP025746_3	3.20\|4099397\|35\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099397-4099431	35	NZ_CP015326	Bacillus filamentosus strain Hbe603 plasmid pBEH4, complete sequence	141-175	7	0.8
CP025746_3	3.20\|4099397\|35\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099397-4099431	35	NZ_CP009299	Bacillus cereus D17 plasmid unnamed, complete sequence	187631-187665	7	0.8
CP025746_3	3.20\|4099397\|35\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099397-4099431	35	NZ_CP053930	Bacillus cereus strain FDAARGOS_797 plasmid unnamed1, complete sequence	200438-200472	7	0.8
CP025746_3	3.25\|4099728\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099728-4099763	36	NZ_CP010908	Candidatus Pantoea carbekii strain US plasmid pBMSBPS1, complete sequence	14149-14184	7	0.806
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_010418	Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence	204548-204581	7	0.794
CP025746_4	4.8\|4104473\|33\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104473-4104505	33	NZ_CP038614	Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence	39011-39043	7	0.788
CP025746_6	6.3\|4121713\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4121713-4121746	34	MK448877	Streptococcus phage Javan220, complete genome	28398-28431	7	0.794
CP025746_6	6.24\|4123077\|36\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4123077-4123112	36	LN681539	Clostridium phage phiCD505, complete genome	23902-23937	7	0.806
CP025746_6	6.24\|4123077\|36\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4123077-4123112	36	LN681542	Clostridium phage phiMMP03, complete genome	22881-22916	7	0.806
CP025746_6	6.55\|4125094\|35\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4125094-4125128	35	MF417900	Uncultured Caudovirales phage clone 8AX_1, partial genome	3473-3507	7	0.8
CP025746_6	6.55\|4125094\|35\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4125094-4125128	35	MF417899	Uncultured Caudovirales phage clone 7S_8, partial genome	38466-38500	7	0.8
CP025746_3	3.2\|4098223\|34\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4098223-4098256	34	NZ_CP041396	Bacteroides ovatus strain 3725 D1 iv plasmid unnamed1, complete sequence	19567-19600	8	0.765
CP025746_3	3.20\|4099397\|35\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099397-4099431	35	MW057857	Providencia phage PSTCR5, complete genome	85730-85764	8	0.771
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_019774	Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequence	75223-75256	8	0.765
CP025746_5	5.4\|4116811\|36\|CP025746\|CRISPRCasFinder	4116811-4116846	36	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	63030-63065	8	0.778
CP025746_5	5.7\|4116811\|35\|CP025746\|CRT	4116811-4116845	35	MH622943	Myoviridae sp. isolate ctbc_4, complete genome	63030-63064	8	0.771
CP025746_6	6.32\|4123598\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4123598-4123631	34	NZ_CP051863	Acinetobacter baumannii strain Ab-C102 plasmid pAb-C102_1, complete sequence	7017-7050	8	0.765
CP025746_6	6.32\|4123598\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4123598-4123631	34	NZ_CP010358	Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence	100564-100597	8	0.765
CP025746_6	6.52\|4124901\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4124901-4124934	34	NZ_CP016702	Lactococcus lactis subsp. lactis strain 275 plasmid p275D, complete sequence	52498-52531	8	0.765
CP025746_3	3.33\|4100251\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100251-4100286	36	MK250021	Prevotella phage Lak-B2, complete genome	463854-463889	9	0.75
CP025746_3	3.33\|4100251\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100251-4100286	36	MK250024	Prevotella phage Lak-B5, complete genome	456459-456494	9	0.75
CP025746_3	3.33\|4100251\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100251-4100286	36	MK250028	Prevotella phage Lak-B9, complete genome	460890-460925	9	0.75
CP025746_3	3.33\|4100251\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100251-4100286	36	MK250023	Prevotella phage Lak-B4, complete genome	463088-463123	9	0.75
CP025746_3	3.33\|4100251\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100251-4100286	36	MK250025	Prevotella phage Lak-B6, complete genome	459552-459587	9	0.75
CP025746_3	3.33\|4100251\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100251-4100286	36	MK250022	Prevotella phage Lak-B3, complete genome	459643-459678	9	0.75
CP025746_3	3.33\|4100251\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100251-4100286	36	MK250027	Prevotella phage Lak-B8, complete genome	463617-463652	9	0.75
CP025746_3	3.33\|4100251\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100251-4100286	36	MK250026	Prevotella phage Lak-B7, complete genome	462655-462690	9	0.75
CP025746_3	3.33\|4100251\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100251-4100286	36	MK250020	Prevotella phage Lak-B1, complete genome	460873-460908	9	0.75
CP025746_4	4.2\|4104085\|33\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104085-4104117	33	MN856069	Bacteriophage sp. isolate 102, complete genome	10434-10466	9	0.727
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	MK250029	Prevotella phage Lak-C1, complete genome	316693-316726	9	0.735
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	MK250016	Prevotella phage Lak-A1, complete genome	351475-351508	9	0.735
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	MK250019	Prevotella phage Lak-A2, complete genome	270998-271031	9	0.735
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NZ_CP019923	Borreliella burgdorferi strain PAbe plasmid p_lp28-1, complete sequence	25407-25440	9	0.735
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_001851	Borreliella burgdorferi B31 plasmid lp28-1, complete sequence	2718-2751	9	0.735
CP025746_6	6.14\|4122428\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4122428-4122461	34	AP013545	Uncultured phage_MedDCM-OCT-S46-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-U-MedDCM-OCT-S46-C10	36373-36406	9	0.735
CP025746_6	6.14\|4122428\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4122428-4122461	34	MK448453	Streptococcus satellite phage Javan360, complete genome	10960-10993	9	0.735
CP025746_6	6.19\|4122753\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4122753-4122786	34	NZ_CP054609	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed1, complete sequence	237785-237818	9	0.735
CP025746_6	6.32\|4123598\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4123598-4123631	34	NZ_CP009336	Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence	45720-45753	9	0.735
CP025746_6	6.32\|4123598\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4123598-4123631	34	NZ_CP015592	Bacillus cereus strain AR156 plasmid pAR460, complete sequence	284024-284057	9	0.735
CP025746_6	6.36\|4123858\|35\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4123858-4123892	35	NZ_CP015630	Borrelia turicatae strain BTE5EL plasmid lp159	4964-4998	9	0.743
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MN689511	Lactococcus phage CHPC1183, complete genome	4376-4411	10	0.722
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	NC_001706	Lactococcus phage c2, complete genome	4287-4322	10	0.722
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MN337887	Lactococcus phage vB_LacS_15, complete genome	3965-4000	10	0.722
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MN689503	Lactococcus phage 5171F, complete genome	4279-4314	10	0.722
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MH779518	Lactococcus phage vB_Llc_bIBB12, complete genome	4383-4418	10	0.722
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MN689504	Lactococcus phage 5205F, complete genome	4202-4237	10	0.722
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MN689506	Lactococcus phage CHPC1161, complete genome	3763-3798	10	0.722
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MN689526	Lactococcus phage CHPC966, partial genome	4261-4296	10	0.722
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	L48605	Bacteriophage c2 complete genome	4287-4322	10	0.722
CP025746_3	3.25\|4099728\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099728-4099763	36	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	164445-164480	10	0.722
CP025746_3	3.31\|4100120\|35\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100120-4100154	35	MK250016	Prevotella phage Lak-A1, complete genome	60943-60977	10	0.714
CP025746_3	3.34\|4100317\|34\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100317-4100350	34	KF751794	Campylobacter phage CJIE4-2, complete genome	11020-11053	10	0.706
CP025746_3	3.34\|4100317\|34\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4100317-4100350	34	KF751793	Campylobacter phage CJIE4-1, complete genome	12464-12497	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NZ_CP019922	Borreliella burgdorferi strain PAbe plasmid p_lp17, complete sequence	15837-15870	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NZ_CP019926	Borreliella burgdorferi strain PAbe plasmid p_lp56, complete sequence	51974-52007	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_011781	Borreliella burgdorferi ZS7 plasmid ZS7_lp28-3, complete sequence	27504-27537	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_000956	Borreliella burgdorferi B31 plasmid lp56, complete sequence	51974-52007	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NZ_CP019851	Borreliella burgdorferi plasmid lp17, complete sequence	15857-15890	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NZ_CP019855	Borreliella burgdorferi plasmid lp56, complete sequence	51975-52008	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NZ_CP019761	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp17, complete sequence	15858-15891	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NZ_CP019766	Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp56, complete sequence	51954-51987	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_011785	Borreliella burgdorferi ZS7 plasmid ZS7_lp28-4, complete sequence	1743-1776	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_017405	Borreliella burgdorferi JD1 plasmid JD1 lp28-3, complete sequence	992-1025	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_017407	Borreliella burgdorferi JD1 plasmid JD1 lp28-4, complete sequence	2666-2699	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_017416	Borreliella burgdorferi N40 plasmid N40_lp28-4, complete sequence	1752-1785	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NZ_CP031402	Borreliella burgdorferi strain MM1 plasmid plsm_lp28-3, complete sequence	306-339	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_001853	Borreliella burgdorferi B31 plasmid lp28-3, complete sequence	986-1019	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_004988	Borrelia burgdorferi ATCC 35210 plasmid lp16.9, complete sequence	960-993	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	NC_001849	Borreliella burgdorferi B31 plasmid lp17, complete sequence	931-964	10	0.706
CP025746_4	4.6\|4104343\|34\|CP025746\|PILER-CR,CRISPRCasFinder,CRT	4104343-4104376	34	MN694694	Marine virus AFVG_250M960, complete genome	21433-21466	10	0.706
CP025746_6	6.28\|4123340\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4123340-4123373	34	KX171213	Staphylococcus phage vB_SscM-2, complete genome	77833-77866	10	0.706
CP025746_6	6.28\|4123340\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4123340-4123373	34	NC_047767	Staphylococcus phage vB_SscM-1, complete genome	77832-77865	10	0.706
CP025746_6	6.32\|4123598\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4123598-4123631	34	AP014123	Uncultured Mediterranean phage uvMED isolate uvMED-GF-C41-MedDCM-OCT-S29-C50, * SEQUENCING IN PROGRESS *	17924-17957	10	0.706
CP025746_6	6.39\|4124053\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4124053-4124086	34	MN693838	Marine virus AFVG_250M37, complete genome	34751-34784	10	0.706
CP025746_6	6.45\|4124441\|36\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4124441-4124476	36	NZ_CP007677	Staphylococcus aureus strain HUV05 plasmid pHUV05-01, complete sequence	8002-8037	10	0.722
CP025746_6	6.45\|4124441\|36\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4124441-4124476	36	NZ_CP007678	Staphylococcus aureus strain HUV05 plasmid pHUV05-02, complete sequence	3823-3858	10	0.722
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MF443119	Lactococcus phage 62402, complete genome	4506-4541	11	0.694
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MN689512	Lactococcus phage CHPC122, complete genome	5126-5161	11	0.694
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MK301443	Lactococcus phage CW09, complete genome	4589-4624	11	0.694
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MN689507	Lactococcus phage CHPC116, complete genome	4469-4504	11	0.694
CP025746_3	3.17\|4099201\|36\|CP025746\|CRISPRCasFinder,CRT,PILER-CR	4099201-4099236	36	MK301442	Lactococcus phage 20R03M, complete genome	4589-4624	11	0.694
CP025746_6	6.28\|4123340\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4123340-4123373	34	MG945677	UNVERIFIED: Microviridae sp. isolate 936-1706, complete genome	4752-4785	11	0.676
CP025746_6	6.39\|4124053\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4124053-4124086	34	NC_017400	Borreliella burgdorferi N40 plasmid N40_cp32-4, complete sequence	13485-13518	11	0.676
CP025746_6	6.39\|4124053\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4124053-4124086	34	NC_015903	Borreliella bissettii DN127 plasmid cp32-11, complete sequence	27222-27255	11	0.676
CP025746_6	6.39\|4124053\|34\|CP025746\|CRT,PILER-CR,CRISPRCasFinder	4124053-4124086	34	NZ_CP017205	Borreliella burgdorferi strain B331 plasmid B331_cp32_11, complete sequence	27746-27779	11	0.676

1. spacer 3.16|4099137|34|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to GU943034 (Uncultured phage MedDCM-OCT-S08-C232 genomic sequence) position: , mismatch: 5, identity: 0.853

ctaaagcagatagacctaaactaaatcaattatt	CRISPR spacer
caacaacagatagacctaaattaaatccattatt	Protospacer
* * *.**************.****** ******

2. spacer 6.11|4122234|35|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to MK448842 (Streptococcus phage Javan110, complete genome) position: , mismatch: 6, identity: 0.829

taataccaccttttgcataccattctactccaagg	CRISPR spacer
aaataccaccttttgcataccactcaactcctata	Protospacer
 *********************.** ***** * .

3. spacer 3.12|4098873|35|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to KX438380 (Salmonella phage vB_SalM_PM10, complete genome) position: , mismatch: 7, identity: 0.8

ataaagcaaaataatagtgctgcttggttatctac	CRISPR spacer
agtaagttgaatatttgtgctgcttggttatctac	Protospacer
*  ***. .**** * *******************

4. spacer 3.12|4098873|35|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MN953776 (Salmonella phage chennai, complete genome) position: , mismatch: 7, identity: 0.8

ataaagcaaaataatagtgctgcttggttatctac	CRISPR spacer
agtaagttgaatatttgtgctgcttggttatctac	Protospacer
*  ***. .**** * *******************

5. spacer 3.12|4098873|35|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MH523359 (Salmonella phage vB_SalM-LPST94, complete genome) position: , mismatch: 7, identity: 0.8

ataaagcaaaataatagtgctgcttggttatctac	CRISPR spacer
agtaagttgaatatttgtgctgcttggttatctac	Protospacer
*  ***. .**** * *******************

6. spacer 3.20|4099397|35|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015326 (Bacillus filamentosus strain Hbe603 plasmid pBEH4, complete sequence) position: , mismatch: 7, identity: 0.8

tgaattg--ccagaaaggaaattgatatgaaagaaat	CRISPR spacer
--tattggtcgagaaaggaaattgataagaaggaaag	Protospacer
   ****  * **************** ***.****

7. spacer 3.20|4099397|35|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP009299 (Bacillus cereus D17 plasmid unnamed, complete sequence) position: , mismatch: 7, identity: 0.8

-tgaattgccagaaaggaaattgatatgaaagaaat	CRISPR spacer
aaaaattgat-gaaaggaaattactatgaaagaaat	Protospacer
  .***** . ***********. ************

8. spacer 3.20|4099397|35|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP053930 (Bacillus cereus strain FDAARGOS_797 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

-tgaattgccagaaaggaaattgatatgaaagaaat	CRISPR spacer
aaaaattgat-gaaaggaaattactatgaaagaaat	Protospacer
  .***** . ***********. ************

9. spacer 3.25|4099728|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010908 (Candidatus Pantoea carbekii strain US plasmid pBMSBPS1, complete sequence) position: , mismatch: 7, identity: 0.806

aagaaactattaattaataataattatttgaaccat	CRISPR spacer
aagaaacaattaattaataataatttttataattaa	Protospacer
******* ***************** **  **..*

10. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_010418 (Clostridium botulinum A3 str. Loch Maree plasmid pCLK, complete sequence) position: , mismatch: 7, identity: 0.794

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
cattgatctgtttttctaattctctttggtgttc	Protospacer
. ** * .********** ************* *

11. spacer 4.8|4104473|33|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038614 (Arsenophonus nasoniae strain FIN plasmid pArsFIN2, complete sequence) position: , mismatch: 7, identity: 0.788

tagacaatcttattttagagaat-----aagctaggaa	CRISPR spacer
tagataattttattttagagaatagtgaaagct-----	Protospacer
****.***.**************     *****

12. spacer 6.3|4121713|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to MK448877 (Streptococcus phage Javan220, complete genome) position: , mismatch: 7, identity: 0.794

aaggctttaaggatagatttttctttgtaacaaa	CRISPR spacer
aagactttaaggatagctttttctttgtttttac	Protospacer
***.************ ***********  . *

13. spacer 6.24|4123077|36|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to LN681539 (Clostridium phage phiCD505, complete genome) position: , mismatch: 7, identity: 0.806

tctaggttcttttctttttgaaagaaggtgataaat	CRISPR spacer
agtaggttctttttttattgaaagaaggtgactaaa	Protospacer
  ***********.** **************. **

14. spacer 6.24|4123077|36|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to LN681542 (Clostridium phage phiMMP03, complete genome) position: , mismatch: 7, identity: 0.806

tctaggttcttttctttttgaaagaaggtgataaat	CRISPR spacer
agtaggttctttttttattgaaagaaggtgactaaa	Protospacer
  ***********.** **************. **

15. spacer 6.55|4125094|35|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to MF417900 (Uncultured Caudovirales phage clone 8AX_1, partial genome) position: , mismatch: 7, identity: 0.8

attaagtaatacttcattgtctttaaactctttca	CRISPR spacer
atttgtttatacatcatagtctttaaactctttaa	Protospacer
*** . * **** **** *************** *

16. spacer 6.55|4125094|35|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to MF417899 (Uncultured Caudovirales phage clone 7S_8, partial genome) position: , mismatch: 7, identity: 0.8

attaagtaatacttcattgtctttaaactctttca	CRISPR spacer
atttgtttatacatcatagtctttaaactctttaa	Protospacer
*** . * **** **** *************** *

17. spacer 3.2|4098223|34|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041396 (Bacteroides ovatus strain 3725 D1 iv plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.765

aatggtgatgaacaaatagaaggttt-tgatactg	CRISPR spacer
gatggtaaagaacaaatagaaggtttgtcaggtt-	Protospacer
.*****.* ***************** * * ..*

18. spacer 3.20|4099397|35|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MW057857 (Providencia phage PSTCR5, complete genome) position: , mismatch: 8, identity: 0.771

tgaattgccagaaaggaaattgatatgaaagaaat	CRISPR spacer
tgaattgagagaaaggaaattgataaagaattaag	Protospacer
*******  **************** ..**  **

19. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_019774 (Anabaena cylindrica PCC 7122 plasmid pANACY.04, complete sequence) position: , mismatch: 8, identity: 0.765

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
ggttttgttgtttttttatttctcttatatctgc	Protospacer
  *** *********.**********  .* ***

20. spacer 5.4|4116811|36|CP025746|CRISPRCasFinder matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 8, identity: 0.778

----atcatatagtttttacataccattgtatttattttt	CRISPR spacer
gtttaccaca----ttttatataccattgtatatattttt	Protospacer
    *.**.*    *****.************ *******

21. spacer 5.7|4116811|35|CP025746|CRT matches to MH622943 (Myoviridae sp. isolate ctbc_4, complete genome) position: , mismatch: 8, identity: 0.771

----atcatatagtttttacataccattgtatttatttt	CRISPR spacer
gtttaccaca----ttttatataccattgtatatatttt	Protospacer
    *.**.*    *****.************ ******

22. spacer 6.32|4123598|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP051863 (Acinetobacter baumannii strain Ab-C102 plasmid pAb-C102_1, complete sequence) position: , mismatch: 8, identity: 0.765

agaatccttaaaatcagaaatattatcaccaata	CRISPR spacer
ttaatcctaaaaatcagaaatatgatatataata	Protospacer
  ****** ************** **   .****

23. spacer 6.32|4123598|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP010358 (Acinetobacter johnsonii XBB1 plasmid pXBB1-8, complete sequence) position: , mismatch: 8, identity: 0.765

agaatccttaaaatcagaaatattatcaccaata	CRISPR spacer
ttaatcctaaaaatcagaaatatgatatataata	Protospacer
  ****** ************** **   .****

24. spacer 6.52|4124901|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP016702 (Lactococcus lactis subsp. lactis strain 275 plasmid p275D, complete sequence) position: , mismatch: 8, identity: 0.765

tttgaactatatttcaaaaaaggagtaataaaag	CRISPR spacer
ttactagtatatttaaaaaaaggagaaataatgg	Protospacer
**   * ******* ********** ***** .*

25. spacer 3.33|4100251|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 9, identity: 0.75

aatcattatttaatattatttcatatttattatttt	CRISPR spacer
tatatgaatttaatattttttcatattcattattaa	Protospacer
 **    ********** *********.******

26. spacer 3.33|4100251|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK250024 (Prevotella phage Lak-B5, complete genome) position: , mismatch: 9, identity: 0.75

aatcattatttaatattatttcatatttattatttt	CRISPR spacer
tatatgaatttaatattttttcatattcattattaa	Protospacer
 **    ********** *********.******

27. spacer 3.33|4100251|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK250028 (Prevotella phage Lak-B9, complete genome) position: , mismatch: 9, identity: 0.75

aatcattatttaatattatttcatatttattatttt	CRISPR spacer
tatatgaatttaatattttttcatattcattattaa	Protospacer
 **    ********** *********.******

28. spacer 3.33|4100251|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 9, identity: 0.75

aatcattatttaatattatttcatatttattatttt	CRISPR spacer
tatatgaatttaatattttttcatattcattattaa	Protospacer
 **    ********** *********.******

29. spacer 3.33|4100251|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK250025 (Prevotella phage Lak-B6, complete genome) position: , mismatch: 9, identity: 0.75

aatcattatttaatattatttcatatttattatttt	CRISPR spacer
tatatgaatttaatattttttcatattcattattaa	Protospacer
 **    ********** *********.******

30. spacer 3.33|4100251|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK250022 (Prevotella phage Lak-B3, complete genome) position: , mismatch: 9, identity: 0.75

aatcattatttaatattatttcatatttattatttt	CRISPR spacer
tatatgaatttaatattttttcatattcattattaa	Protospacer
 **    ********** *********.******

31. spacer 3.33|4100251|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK250027 (Prevotella phage Lak-B8, complete genome) position: , mismatch: 9, identity: 0.75

aatcattatttaatattatttcatatttattatttt	CRISPR spacer
tatatgaatttaatattttttcatattcattattaa	Protospacer
 **    ********** *********.******

32. spacer 3.33|4100251|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK250026 (Prevotella phage Lak-B7, complete genome) position: , mismatch: 9, identity: 0.75

aatcattatttaatattatttcatatttattatttt	CRISPR spacer
tatatgaatttaatattttttcatattcattattaa	Protospacer
 **    ********** *********.******

33. spacer 3.33|4100251|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK250020 (Prevotella phage Lak-B1, complete genome) position: , mismatch: 9, identity: 0.75

aatcattatttaatattatttcatatttattatttt	CRISPR spacer
tatatgaatttaatattttttcatattcattattaa	Protospacer
 **    ********** *********.******

34. spacer 4.2|4104085|33|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to MN856069 (Bacteriophage sp. isolate 102, complete genome) position: , mismatch: 9, identity: 0.727

taaaaaaaagatagcatatagctatcttacttg	CRISPR spacer
agataaaaagatagcagatcgctatcttaagca	Protospacer
 .* ************ ** *********  ..

35. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.735

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
actttaattgtttttctatctctctttccttgtt	Protospacer
 *****.************.*******  *   .

36. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.735

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
actttaattgtttttctatctctctttccttgtt	Protospacer
 *****.************.*******  *   .

37. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.735

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
actttaattgtttttctatctctctttccttgtt	Protospacer
 *****.************.*******  *   .

38. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019923 (Borreliella burgdorferi strain PAbe plasmid p_lp28-1, complete sequence) position: , mismatch: 9, identity: 0.735

tctttagttgtttttctatttctctttggtgtgc-	CRISPR spacer
gatggagttgtttttctatttctgattgg-gtatt	Protospacer
  *  ******************  **** **..

39. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_001851 (Borreliella burgdorferi B31 plasmid lp28-1, complete sequence) position: , mismatch: 9, identity: 0.735

tctttagttgtttttctatttctctttggtgtgc-	CRISPR spacer
gatggagttgtttttctatttctgattgg-gtatt	Protospacer
  *  ******************  **** **..

40. spacer 6.14|4122428|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to AP013545 (Uncultured phage_MedDCM-OCT-S46-C10 DNA, complete genome, group G8, isolate: uvMED-CGR-U-MedDCM-OCT-S46-C10) position: , mismatch: 9, identity: 0.735

ttataaaattaattataaagctaaaatgacagcg	CRISPR spacer
aacaagaatttattctaaagctaaaatgacagaa	Protospacer
    *.**** *** ***************** .

41. spacer 6.14|4122428|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to MK448453 (Streptococcus satellite phage Javan360, complete genome) position: , mismatch: 9, identity: 0.735

ttataaaattaattataaagctaaaatgacagcg	CRISPR spacer
tgataaaattaataatgaagctaaaaaagcttct	Protospacer
* *********** **.********* ..*  *

42. spacer 6.19|4122753|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP054609 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.735

ctaaagctacaaaaaagcgacaagcca-aaaccat	CRISPR spacer
aaaaagctataaaaaagtgacaagccgtgaagta-	Protospacer
  *******.*******.********. .** .*

43. spacer 6.32|4123598|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP009336 (Bacillus thuringiensis strain HD1011 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

agaatcct-----taaaatcagaaatattatcaccaata	CRISPR spacer
-----cctctttataaaatcaaaaatattataaccaaat	Protospacer
     ***     ********.********* *****

44. spacer 6.32|4123598|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015592 (Bacillus cereus strain AR156 plasmid pAR460, complete sequence) position: , mismatch: 9, identity: 0.735

agaatcct-----taaaatcagaaatattatcaccaata	CRISPR spacer
-----cctctttataaaatcaaaaatattataaccaaat	Protospacer
     ***     ********.********* *****

45. spacer 6.36|4123858|35|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015630 (Borrelia turicatae strain BTE5EL plasmid lp159) position: , mismatch: 9, identity: 0.743

atattatctcatatttattatttttaaattcttca	CRISPR spacer
caattatttcatgtttattatttttaaataaaact	Protospacer
  *****.****.****************    *

46. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MN689511 (Lactococcus phage CHPC1183, complete genome) position: , mismatch: 10, identity: 0.722

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
cttttgttcagaagaatgttacaaagattatattga	Protospacer
.  *..*.********** ****.**********

47. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to NC_001706 (Lactococcus phage c2, complete genome) position: , mismatch: 10, identity: 0.722

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
cttttgttcagaagaatgttacaaagattatattga	Protospacer
.  *..*.********** ****.**********

48. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MN337887 (Lactococcus phage vB_LacS_15, complete genome) position: , mismatch: 10, identity: 0.722

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
cttttgttcagaagaatgttacaaagattatattga	Protospacer
.  *..*.********** ****.**********

49. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MN689503 (Lactococcus phage 5171F, complete genome) position: , mismatch: 10, identity: 0.722

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
cttttgttcagaagaatgttacaaagattatattga	Protospacer
.  *..*.********** ****.**********

50. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MH779518 (Lactococcus phage vB_Llc_bIBB12, complete genome) position: , mismatch: 10, identity: 0.722

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
cttttgttcagaagaatgttacaaagattatattga	Protospacer
.  *..*.********** ****.**********

51. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MN689504 (Lactococcus phage 5205F, complete genome) position: , mismatch: 10, identity: 0.722

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
cttttgttcagaagaatgttacaaagattatattga	Protospacer
.  *..*.********** ****.**********

52. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MN689506 (Lactococcus phage CHPC1161, complete genome) position: , mismatch: 10, identity: 0.722

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
cttttgttcagaagaatgttacaaagattatattga	Protospacer
.  *..*.********** ****.**********

53. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MN689526 (Lactococcus phage CHPC966, partial genome) position: , mismatch: 10, identity: 0.722

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
cttttgttcagaagaatgttacaaagattatattga	Protospacer
.  *..*.********** ****.**********

54. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to L48605 (Bacteriophage c2 complete genome) position: , mismatch: 10, identity: 0.722

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
cttttgttcagaagaatgttacaaagattatattga	Protospacer
.  *..*.********** ****.**********

55. spacer 3.25|4099728|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 10, identity: 0.722

aagaaactattaattaataataattatttgaaccat	CRISPR spacer
gattccctattacttaataataattttttgaattgt	Protospacer
.*    ****** ************ ******...*

56. spacer 3.31|4100120|35|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 10, identity: 0.714

tttaatacatataagaaacttttttaaaaaactat	CRISPR spacer
tttaataaatataaaaaacttttttgtggattaaa	Protospacer
******* ******.**********. ..* . *

57. spacer 3.34|4100317|34|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to KF751794 (Campylobacter phage CJIE4-2, complete genome) position: , mismatch: 10, identity: 0.706

ttacagattatgcagataaagaagctgtttatac	CRISPR spacer
aaaaaataaatgcagataaaaaagttgtttatat	Protospacer
  * *.   ***********.***.********.

58. spacer 3.34|4100317|34|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to KF751793 (Campylobacter phage CJIE4-1, complete genome) position: , mismatch: 10, identity: 0.706

ttacagattatgcagataaagaagctgtttatac	CRISPR spacer
aaaaaataaatgcagataaaaaagttgtttatat	Protospacer
  * *.   ***********.***.********.

59. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019922 (Borreliella burgdorferi strain PAbe plasmid p_lp17, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

60. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019926 (Borreliella burgdorferi strain PAbe plasmid p_lp56, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

61. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_011781 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-3, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

62. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_000956 (Borreliella burgdorferi B31 plasmid lp56, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

63. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019851 (Borreliella burgdorferi plasmid lp17, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

64. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019855 (Borreliella burgdorferi plasmid lp56, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

65. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019761 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp17, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

66. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019766 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp56, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

67. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_011785 (Borreliella burgdorferi ZS7 plasmid ZS7_lp28-4, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

68. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_017405 (Borreliella burgdorferi JD1 plasmid JD1 lp28-3, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

69. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_017407 (Borreliella burgdorferi JD1 plasmid JD1 lp28-4, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

70. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_017416 (Borreliella burgdorferi N40 plasmid N40_lp28-4, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

71. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031402 (Borreliella burgdorferi strain MM1 plasmid plsm_lp28-3, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

72. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_001853 (Borreliella burgdorferi B31 plasmid lp28-3, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

73. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_004988 (Borrelia burgdorferi ATCC 35210 plasmid lp16.9, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

74. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to NC_001849 (Borreliella burgdorferi B31 plasmid lp17, complete sequence) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
gatggagttgtttttctatttctgattggttatt	Protospacer
  *  ******************  *****   .

75. spacer 4.6|4104343|34|CP025746|PILER-CR,CRISPRCasFinder,CRT matches to MN694694 (Marine virus AFVG_250M960, complete genome) position: , mismatch: 10, identity: 0.706

tctttagttgtttttctatttctctttggtgtgc	CRISPR spacer
tttcgtgttgtttttccagttctctttggtccaa	Protospacer
*.*.  **********.* *********** ..

76. spacer 6.28|4123340|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to KX171213 (Staphylococcus phage vB_SscM-2, complete genome) position: , mismatch: 10, identity: 0.706

aaagattaaaatgggataaagaaaagttcactta	CRISPR spacer
tcatattaatatgggattaagaaaagttagttat	Protospacer
  * ***** ******* ********** ..*

77. spacer 6.28|4123340|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NC_047767 (Staphylococcus phage vB_SscM-1, complete genome) position: , mismatch: 10, identity: 0.706

aaagattaaaatgggataaagaaaagttcactta	CRISPR spacer
tcatattaatatgggattaagaaaagttagttat	Protospacer
  * ***** ******* ********** ..*

78. spacer 6.32|4123598|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to AP014123 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-C41-MedDCM-OCT-S29-C50, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.706

agaatccttaaaatcagaaatattatcaccaata	CRISPR spacer
taatctataaaaatcataaatattatcatcaatg	Protospacer
 .* .. * ******* ***********.****.

79. spacer 6.39|4124053|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to MN693838 (Marine virus AFVG_250M37, complete genome) position: , mismatch: 10, identity: 0.706

ttaaagaggcttttaataacttttctaatactgg	CRISPR spacer
cagagaaggcttttaatagcttatctaataagga	Protospacer
. .*..************.*** *******  *.

80. spacer 6.45|4124441|36|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP007677 (Staphylococcus aureus strain HUV05 plasmid pHUV05-01, complete sequence) position: , mismatch: 10, identity: 0.722

cggacagtttgaaaataactatataatgtttcaagt	CRISPR spacer
aaaaattcttgaaaataacgatataatgtttaaagg	Protospacer
 ..*   .*********** *********** ***

81. spacer 6.45|4124441|36|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP007678 (Staphylococcus aureus strain HUV05 plasmid pHUV05-02, complete sequence) position: , mismatch: 10, identity: 0.722

cggacagtttgaaaataactatataatgtttcaagt	CRISPR spacer
aaaaattcttgaaaataacgatataatgtttaaagg	Protospacer
 ..*   .*********** *********** ***

82. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MF443119 (Lactococcus phage 62402, complete genome) position: , mismatch: 11, identity: 0.694

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
gttctgttcagaagaatgttacaaagattatattga	Protospacer
   ...*.********** ****.**********

83. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MN689512 (Lactococcus phage CHPC122, complete genome) position: , mismatch: 11, identity: 0.694

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
gttctgttcagaagaatgttacaaagattatattga	Protospacer
   ...*.********** ****.**********

84. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK301443 (Lactococcus phage CW09, complete genome) position: , mismatch: 11, identity: 0.694

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
gttctgttcagaagaatgttacaaagattatattga	Protospacer
   ...*.********** ****.**********

85. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MN689507 (Lactococcus phage CHPC116, complete genome) position: , mismatch: 11, identity: 0.694

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
gttctgttcagaagaatgttacaaagattatattga	Protospacer
   ...*.********** ****.**********

86. spacer 3.17|4099201|36|CP025746|CRISPRCasFinder,CRT,PILER-CR matches to MK301442 (Lactococcus phage 20R03M, complete genome) position: , mismatch: 11, identity: 0.694

taatcatccagaagaatggtacagagattatattcc	CRISPR spacer
gttctgttcagaagaatgttacaaagattatattga	Protospacer
   ...*.********** ****.**********

87. spacer 6.28|4123340|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to MG945677 (UNVERIFIED: Microviridae sp. isolate 936-1706, complete genome) position: , mismatch: 11, identity: 0.676

aaagattaaaatgggataaagaaaagttcactta	CRISPR spacer
accagttaaattgggagaaagaaaagttcgagac	Protospacer
*  ..***** ***** ************.

88. spacer 6.39|4124053|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NC_017400 (Borreliella burgdorferi N40 plasmid N40_cp32-4, complete sequence) position: , mismatch: 11, identity: 0.676

ttaaagaggcttttaataacttttctaatactgg	CRISPR spacer
cactcaattcttttaataatttttctaattctga	Protospacer
.    .*  **********.********* ***.

89. spacer 6.39|4124053|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NC_015903 (Borreliella bissettii DN127 plasmid cp32-11, complete sequence) position: , mismatch: 11, identity: 0.676

ttaaagaggcttttaataacttttctaatactgg	CRISPR spacer
cactcaattcttttaataactttcctaattctgc	Protospacer
.    .*  **************.***** ***

90. spacer 6.39|4124053|34|CP025746|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017205 (Borreliella burgdorferi strain B331 plasmid B331_cp32_11, complete sequence) position: , mismatch: 11, identity: 0.676

ttaaagaggcttttaataacttttctaatactgg	CRISPR spacer
cactcaattcttttaataatttttctaattctga	Protospacer
.    .*  **********.********* ***.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1148112 : 1172370

Clostridium_phage(30.0%)

bacteriocin,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA31083.1\|1148112_1148961_+\|transposase	transposase	E9P639	Wolbachia_endosymbiont_wVitB_of_Nasonia_vitripennis_phage	2.4e-21	29.8
QAA31084.1\|1149389_1150034_+	hypothetical protein	NA	NA	NA	NA
QAA31085.1\|1150113_1150488_+	hypothetical protein	NA	NA	NA	NA
QAA31086.1\|1150603_1151260_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	2.0e-60	52.6
QAA31087.1\|1151356_1151947_-	GTP cyclohydrolase I FolE	S4U0J3	uncultured_phage	4.4e-46	52.7
QAA31088.1\|1151948_1152614_-	putative 7-carboxy-7-deazaguanine synthase QueE	S4TZT1	uncultured_phage	2.5e-37	43.7
QAA31089.1\|1152603_1153047_-	6-carboxytetrahydropterin synthase QueD	E7DN67	Pneumococcus_phage	4.3e-14	36.9
QAA31090.1\|1153062_1153824_-	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA
QAA31091.1\|1153820_1154822_-	2-hydroxyglutaryl-CoA dehydratase	NA	NA	NA	NA
QAA31092.1\|1155516_1156263_-	sulfohydrolase	NA	NA	NA	NA
QAA31093.1\|1156291_1156741_-	PTS N-acetylglucosamine transporter subunit IIABC	NA	NA	NA	NA
QAA31094.1\|1156752_1157253_-	transcriptional regulator	A0A0A7RUJ9	Clostridium_phage	2.3e-16	35.8
QAA31095.1\|1157461_1157899_+	RNA polymerase subunit sigma	A0A2H4J015	uncultured_Caudovirales_phage	9.2e-17	43.4
QAA31096.1\|1158029_1159343_-	hypothetical protein	NA	NA	NA	NA
QAA31097.1\|1159885_1162111_+	hypothetical protein	NA	NA	NA	NA
QAA31098.1\|1162199_1162754_-	hypothetical protein	NA	NA	NA	NA
QAA35228.1\|1163277_1163712_+	hypothetical protein	A0A0A7S099	Clostridium_phage	4.7e-45	65.9
QAA31099.1\|1163955_1165002_+	N-acetylmuramoyl-L-alanine amidase	Q8SBN4	Clostridium_phage	7.6e-110	58.7
QAA31100.1\|1165170_1165638_+	hypothetical protein	NA	NA	NA	NA
QAA31101.1\|1165770_1166166_-	hypothetical protein	NA	NA	NA	NA
QAA31102.1\|1166293_1167499_+\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.1e-46	51.1
QAA31103.1\|1167827_1168463_-	hypothetical protein	NA	NA	NA	NA
QAA31104.1\|1168556_1169075_-	hypothetical protein	NA	NA	NA	NA
QAA31105.1\|1171489_1171657_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
QAA31106.1\|1171720_1171900_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
QAA31107.1\|1171963_1172140_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA
QAA31108.1\|1172193_1172370_+\|bacteriocin	thiazolylpeptide-type bacteriocin	NA	NA	NA	NA

DBSCAN-SWA_2

1274822 : 1345829

Clostridium_phage(27.59%)

capsid,portal,transposase,integrase,terminase

attL 1316452:1316469|attR 1324221:1324238

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA31184.1\|1274822_1276049_-\|transposase	IS256 family transposase	A0A218MNI5	uncultured_virus	1.1e-54	53.7
QAA31185.1\|1276605_1277655_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	6.6e-53	36.3
QAA31186.1\|1278641_1279451_-	MerR family transcriptional regulator	NA	NA	NA	NA
QAA31187.1\|1279562_1281293_+	multidrug ABC transporter ATP-binding protein	A0A1V0SJ29	Klosneuvirus	5.3e-15	22.7
QAA31188.1\|1281289_1283056_+	ABC transporter	W8CYL7	Bacillus_phage	8.0e-59	32.1
QAA31189.1\|1283952_1285404_+	arabinan endo-1,5-alpha-L-arabinosidase	NA	NA	NA	NA
QAA31190.1\|1285701_1286928_-	beta-glucanase	NA	NA	NA	NA
QAA31191.1\|1288322_1289288_+	diguanylate cyclase	NA	NA	NA	NA
QAA31192.1\|1289300_1290245_+	peptide ABC transporter permease	NA	NA	NA	NA
QAA31193.1\|1290257_1291238_+	dipeptide/oligopeptide/nickel ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.1e-14	24.9
QAA31194.1\|1291239_1292211_+	peptide ABC transporter substrate-binding protein	G9BWD6	Planktothrix_phage	4.3e-22	32.4
QAA31195.1\|1292402_1292609_+	hypothetical protein	NA	NA	NA	NA
QAA31196.1\|1292692_1294042_+	glucose-6-phosphate isomerase	NA	NA	NA	NA
QAA31197.1\|1294485_1294935_+	YaiI/YqxD family protein	NA	NA	NA	NA
QAA35232.1\|1295555_1296785_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
QAA31198.1\|1296973_1297165_-	hypothetical protein	NA	NA	NA	NA
QAA31199.1\|1297479_1299483_+	triple tyrosine motif-containing protein	NA	NA	NA	NA
QAA31200.1\|1300043_1300799_+	lytic transglycosylase	A0A0H3V0Q1	Geobacillus_virus	4.3e-22	42.2
QAA31201.1\|1300896_1301613_+	16S rRNA pseudouridine(516) synthase	NA	NA	NA	NA
QAA31202.1\|1302603_1304907_+	DNA helicase PcrA	A7KV33	Bacillus_phage	3.1e-135	42.8
QAA31203.1\|1305405_1307400_+	DNA ligase (NAD(+)) LigA	Q332J4	Clostridium_botulinum_C_phage	4.7e-108	36.5
QAA31204.1\|1307401_1307674_+	hypothetical protein	NA	NA	NA	NA
QAA31205.1\|1308347_1308722_+	hypothetical protein	NA	NA	NA	NA
QAA31206.1\|1308782_1310408_+	hypothetical protein	NA	NA	NA	NA
QAA31207.1\|1310570_1312043_-	hypothetical protein	NA	NA	NA	NA
QAA31208.1\|1312171_1313152_+	AIR synthase	NA	NA	NA	NA
QAA31209.1\|1313166_1313913_+	ribonuclease PH	NA	NA	NA	NA
QAA31210.1\|1313914_1314526_+	non-canonical purine NTP pyrophosphatase	A0A0P0A1X5	Cassava_brown_streak_virus	2.1e-11	31.3
QAA31211.1\|1314545_1315019_+	metallophosphoesterase	NA	NA	NA	NA
1316452:1316469	attL	NA	NA	NA	NA
QAA35233.1\|1317379_1318243_-\|integrase	site-specific integrase	A0A1B0T6A8	Bacillus_phage	8.4e-30	35.5
QAA31212.1\|1318874_1319087_-	phosphoribosylglycinamide formyltransferase	NA	NA	NA	NA
QAA31213.1\|1319281_1320478_+	hypothetical protein	NA	NA	NA	NA
QAA31214.1\|1320851_1321217_-	XRE family transcriptional regulator	A0A139ZPI6	Marinitoga_camini_virus	8.0e-06	41.3
QAA31215.1\|1321426_1321687_+	hypothetical protein	NA	NA	NA	NA
QAA31216.1\|1322004_1322559_+	hypothetical protein	NA	NA	NA	NA
QAA31217.1\|1322592_1322847_+	hypothetical protein	NA	NA	NA	NA
QAA31218.1\|1323003_1323213_+	hypothetical protein	NA	NA	NA	NA
QAA31219.1\|1323215_1323476_+	stage III sporulation protein D	M9Q261	Clostridium_phage	1.9e-06	39.2
QAA31220.1\|1323679_1323925_+	hypothetical protein	A0A0A7RTK9	Clostridium_phage	1.1e-14	46.8
QAA31221.1\|1324070_1324493_+	hypothetical protein	A0A0A7RTD8	Clostridium_phage	5.2e-09	35.4
1324221:1324238	attR	NA	NA	NA	NA
QAA31222.1\|1324492_1325653_+	DUF2800 domain-containing protein	A0A0A7S066	Clostridium_phage	5.2e-160	72.8
QAA31223.1\|1325668_1325854_+	hypothetical protein	NA	NA	NA	NA
QAA31224.1\|1325883_1326444_+	DUF2815 domain-containing protein	A0A0A7RVM4	Clostridium_phage	3.0e-89	85.5
QAA31225.1\|1326604_1328566_+	hypothetical protein	A0A0A7RTL3	Clostridium_phage	6.5e-296	74.8
QAA31226.1\|1328613_1329408_-	hypothetical protein	A0A1S5S9V3	Streptococcus_phage	6.1e-35	36.5
QAA31227.1\|1329509_1330535_+	nucleoid-associated protein	NA	NA	NA	NA
QAA31228.1\|1330548_1330746_+	hypothetical protein	A0A0K2CPA1	Brevibacillus_phage	3.7e-18	58.5
QAA31229.1\|1330960_1332226_+	hypothetical protein	NA	NA	NA	NA
QAA31230.1\|1332364_1332772_-	hypothetical protein	NA	NA	NA	NA
QAA35234.1\|1332958_1333234_+	nucleotide pyrophosphohydrolase	A0A1S7FYY8	Listeria_phage	2.3e-21	61.0
QAA31231.1\|1333268_1335710_+	hypothetical protein	A0A0A7RTG3	Clostridium_phage	1.2e-259	55.9
QAA31232.1\|1336141_1336426_+	VRR-NUC domain-containing protein	A0A2K5B272	Erysipelothrix_phage	4.9e-19	55.6
QAA31233.1\|1336415_1337783_+	DEAD/DEAH box helicase	S5MA26	Brevibacillus_phage	4.7e-160	61.2
QAA31234.1\|1337884_1338436_+	hypothetical protein	S5MNT8	Brevibacillus_phage	1.2e-16	32.6
QAA31235.1\|1338807_1339218_+	hypothetical protein	NA	NA	NA	NA
QAA31236.1\|1339415_1340657_+\|terminase	PBSX family phage terminase large subunit	I1TJV3	Clostridium_phage	4.0e-134	57.7
QAA31237.1\|1340660_1342766_+\|portal	phage portal protein	A0A1B1IQE4	uncultured_Mediterranean_phage	1.2e-53	32.5
QAA31238.1\|1342829_1343771_+	hypothetical protein	NA	NA	NA	NA
QAA31239.1\|1343817_1344714_+	hypothetical protein	A0A1B1IQC0	uncultured_Mediterranean_phage	1.8e-14	31.0
QAA31240.1\|1344716_1345829_+\|capsid	phage major capsid protein	A0A0F7L2V9	uncultured_marine_virus	2.4e-13	23.1

DBSCAN-SWA_3

1352088 : 1424489

Clostridium_phage(16.67%)

protease,coat,transposase,tRNA,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA31249.1\|1352088_1352808_+\|tail	phage tail protein	A0A0A7RWN1	Clostridium_phage	3.1e-54	45.7
QAA31250.1\|1352821_1355263_+	hypothetical protein	NA	NA	NA	NA
QAA31251.1\|1355306_1357976_+	hypothetical protein	A0A0A7RUI9	Clostridium_phage	1.7e-105	53.9
QAA31252.1\|1357986_1358235_+	hypothetical protein	NA	NA	NA	NA
QAA31253.1\|1358302_1358617_+	hypothetical protein	NA	NA	NA	NA
QAA31254.1\|1358632_1359517_+	hypothetical protein	D6QWN8	uncultured_phage	3.1e-19	43.0
QAA35235.1\|1359681_1360086_+	hypothetical protein	I2E8W8	Clostridium_phage	2.9e-17	40.2
QAA31255.1\|1360243_1360612_+	hypothetical protein	NA	NA	NA	NA
QAA31256.1\|1361149_1361371_+	XRE family transcriptional regulator	A0A2K9V4D5	Faecalibacterium_phage	6.7e-16	53.4
QAA31257.1\|1361511_1362609_+	hypothetical protein	NA	NA	NA	NA
QAA31258.1\|1362671_1362872_+	transcriptional regulator	A0A2H4J765	uncultured_Caudovirales_phage	6.5e-10	47.0
QAA31259.1\|1363098_1363974_+	hypothetical protein	G3MAP7	Bacillus_virus	5.4e-08	23.2
QAA31260.1\|1363967_1364213_+	hypothetical protein	NA	NA	NA	NA
QAA31261.1\|1364237_1364687_+	hypothetical protein	NA	NA	NA	NA
QAA31262.1\|1364670_1364892_+	hypothetical protein	NA	NA	NA	NA
QAA31263.1\|1365194_1365605_+	hypothetical protein	NA	NA	NA	NA
QAA31264.1\|1365614_1366088_+	hypothetical protein	NA	NA	NA	NA
QAA35236.1\|1366093_1368409_+	hypothetical protein	A0A2H4J056	uncultured_Caudovirales_phage	1.4e-151	40.1
QAA31265.1\|1368639_1368900_+	hypothetical protein	NA	NA	NA	NA
QAA35237.1\|1369760_1370990_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
QAA31266.1\|1371298_1371652_+	hypothetical protein	NA	NA	NA	NA
QAA35238.1\|1372591_1373821_+	group II intron reverse transcriptase/maturase	NA	NA	NA	NA
QAA31267.1\|1374057_1374843_+	motility protein A	NA	NA	NA	NA
QAA31268.1\|1375384_1376530_+\|transposase	transposase	D2XQ03	Bacillus_virus	4.4e-119	58.3
QAA31269.1\|1376698_1377469_+	chemotaxis protein MotB	NA	NA	NA	NA
QAA31270.1\|1377990_1379730_+	thiamine ABC transporter permease	W8CYL7	Bacillus_phage	8.9e-63	33.5
QAA31271.1\|1385904_1386900_+	polysaccharide deacetylase	NA	NA	NA	NA
QAA31272.1\|1387257_1387944_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.1e-35	37.7
QAA31273.1\|1387954_1389340_+	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	3.5e-25	32.5
QAA31274.1\|1389351_1390866_+	hypothetical protein	NA	NA	NA	NA
QAA31275.1\|1390953_1392816_-	LTA synthase family protein	W6LM83	Streptococcus_phage	1.3e-43	28.6
QAA31276.1\|1393234_1393591_+	hypothetical protein	NA	NA	NA	NA
QAA31277.1\|1393523_1394363_+	hypothetical protein	NA	NA	NA	NA
QAA31278.1\|1394355_1394727_+	hypothetical protein	NA	NA	NA	NA
QAA31279.1\|1394731_1395451_+	LytTR family transcriptional regulator	NA	NA	NA	NA
QAA31280.1\|1395880_1396867_+	oxidoreductase	A0A1V0SIN1	Klosneuvirus	9.7e-06	22.1
QAA31281.1\|1397016_1397667_-	hypothetical protein	NA	NA	NA	NA
QAA31282.1\|1397668_1398295_-	RusA family crossover junction endodeoxyribonuclease	NA	NA	NA	NA
QAA31283.1\|1398488_1399508_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	9.8e-70	42.2
QAA31284.1\|1399522_1400563_+	hypothetical protein	NA	NA	NA	NA
QAA31285.1\|1400652_1401990_+\|protease	serine protease	A0A1B1IT49	uncultured_Mediterranean_phage	3.2e-20	29.1
QAA31286.1\|1402245_1403151_+	ATPase	NA	NA	NA	NA
QAA31287.1\|1403152_1404241_+	DUF871 domain-containing protein	NA	NA	NA	NA
QAA31288.1\|1404413_1405040_+	hypothetical protein	D0R097	Streptococcus_phage	2.4e-10	25.7
QAA31289.1\|1405471_1406728_+	hypothetical protein	V9QJ85	Oenococcus_phage	1.3e-07	31.6
QAA31290.1\|1406718_1407468_+	hypothetical protein	NA	NA	NA	NA
QAA31291.1\|1407802_1408303_+	hypothetical protein	NA	NA	NA	NA
QAA31292.1\|1408337_1410305_+	hypothetical protein	NA	NA	NA	NA
QAA31293.1\|1410565_1411681_-	rod shape-determining protein RodA	NA	NA	NA	NA
QAA31294.1\|1412106_1412676_+	hypothetical protein	NA	NA	NA	NA
QAA31295.1\|1412665_1414105_+	hypothetical protein	NA	NA	NA	NA
QAA31296.1\|1414324_1414606_+	DUF503 domain-containing protein	NA	NA	NA	NA
QAA31297.1\|1414885_1415989_-	hypothetical protein	NA	NA	NA	NA
QAA31298.1\|1415998_1416622_-	hypothetical protein	NA	NA	NA	NA
QAA31299.1\|1416789_1418169_+	radical SAM protein	NA	NA	NA	NA
QAA31300.1\|1418827_1420033_+	hypothetical protein	NA	NA	NA	NA
QAA31301.1\|1420259_1421378_-	glycosyltransferase family 1 protein	NA	NA	NA	NA
QAA31302.1\|1421607_1422609_+\|coat	CotS family spore coat protein	NA	NA	NA	NA
QAA31303.1\|1422643_1423387_+\|coat	spore coat protein	NA	NA	NA	NA
QAA31304.1\|1423418_1424489_+\|coat	CotS family spore coat protein	NA	NA	NA	NA

DBSCAN-SWA_4

2199098 : 2207707

Klosneuvirus(33.33%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA31922.1\|2199098_2199965_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	2.3e-35	38.3
QAA31923.1\|2200113_2200965_+	phosphoesterase	A7KV88	Bacillus_phage	1.6e-20	26.2
QAA31924.1\|2201004_2201523_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	4.3e-29	46.7
QAA31925.1\|2201641_2203825_+	(p)ppGpp synthetase	A0A2I2L310	Orpheovirus	9.0e-12	35.0
QAA31926.1\|2203912_2204362_+\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
QAA31927.1\|2204374_2204974_+	MBL fold metallo-hydrolase	A0A1X9I5D3	Streptococcus_phage	6.3e-24	34.3
QAA31928.1\|2205007_2206432_+	coproporphyrinogen dehydrogenase HemZ	NA	NA	NA	NA
QAA31929.1\|2206450_2207707_+\|tRNA	histidine--tRNA ligase	A0A1V0SLE3	Klosneuvirus	1.1e-27	25.8

DBSCAN-SWA_5

3082731 : 3137055

Erysipelothrix_phage(70.0%)

head,holin,protease,capsid,portal,transposase,terminase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA35303.1\|3082731_3083782_-\|transposase	IS630 family transposase	NA	NA	NA	NA
QAA32643.1\|3084397_3084835_+	MarR family transcriptional regulator	NA	NA	NA	NA
QAA32644.1\|3084919_3086296_+	MATE family efflux transporter	NA	NA	NA	NA
QAA35304.1\|3087141_3089796_+	ATP-dependent helicase	L0CLR3	Thysanoplusia_orichalcea_nucleopolyhedrovirus	8.1e-39	27.6
QAA32645.1\|3089796_3090513_+	hypothetical protein	NA	NA	NA	NA
QAA32646.1\|3090928_3091264_+	XRE family transcriptional regulator	NA	NA	NA	NA
QAA32647.1\|3091260_3092313_+	DNA (cytosine-5-)-methyltransferase	G3CB01	Aeropyrum_pernix_spindle-shaped_virus	5.1e-21	48.3
QAA32648.1\|3092355_3093312_-	restriction endonuclease	NA	NA	NA	NA
QAA32649.1\|3096455_3097604_-	type II restriction endonuclease	NA	NA	NA	NA
QAA32650.1\|3097608_3097839_-	Cro/Cl family transcriptional regulator	A0A2K5B263	Erysipelothrix_phage	3.8e-22	78.5
QAA32651.1\|3097874_3099569_-	DUF2326 domain-containing protein	NA	NA	NA	NA
QAA32652.1\|3099501_3099729_-	hypothetical protein	NA	NA	NA	NA
QAA32653.1\|3099712_3100849_-	hypothetical protein	NA	NA	NA	NA
QAA32654.1\|3101863_3102082_+	hypothetical protein	A0A2I4R673	Erysipelothrix_phage	3.1e-21	63.4
QAA32655.1\|3102056_3102380_+	rRNA biogenesis protein rrp5	A0A2K5B2A7	Erysipelothrix_phage	1.4e-22	62.0
QAA32656.1\|3102372_3103521_+	DUF2800 domain-containing protein	A0A2K5B2A8	Erysipelothrix_phage	2.5e-170	77.5
QAA32657.1\|3103513_3104062_+	DUF2815 domain-containing protein	A0A2K5B2A9	Erysipelothrix_phage	2.7e-90	88.4
QAA32658.1\|3104140_3106075_+	hypothetical protein	A0A2K5B2B0	Erysipelothrix_phage	8.7e-293	74.0
QAA32659.1\|3106166_3106919_+	phage antirepressor Ant	A0A2H4IZX7	uncultured_Caudovirales_phage	1.7e-63	49.8
QAA32660.1\|3106918_3107353_+	DUF4406 domain-containing protein	A0A2K5B270	Erysipelothrix_phage	2.3e-60	74.3
QAA32661.1\|3107349_3109716_+	hypothetical protein	A0A1W6JQ82	Corynebacterium_phage	5.9e-243	51.7
QAA32662.1\|3109933_3110215_+	nuclease	A0A2K5B272	Erysipelothrix_phage	3.1e-26	67.8
QAA32663.1\|3110195_3111557_+	DEAD/DEAH box helicase	A0A2K5B273	Erysipelothrix_phage	5.5e-185	79.4
QAA32664.1\|3111556_3111778_+	hypothetical protein	A0A2K5B274	Erysipelothrix_phage	1.8e-13	54.3
QAA32665.1\|3111774_3112185_+	flagellar biosynthesis protein FliA	A0A2K5B275	Erysipelothrix_phage	1.1e-11	30.1
QAA32666.1\|3112338_3112698_+	HNH endonuclease	A0A2K5B276	Erysipelothrix_phage	4.0e-42	64.1
QAA32667.1\|3112812_3113364_+\|terminase	terminase	A0A2K5B277	Erysipelothrix_phage	5.1e-81	77.6
QAA32668.1\|3113366_3114557_+	methionine adenosyltransferase	A0A2K5B278	Erysipelothrix_phage	1.3e-177	77.4
QAA32669.1\|3114537_3115779_+	DNA modification methylase	A0A2I4R670	Erysipelothrix_phage	1.0e-185	75.8
QAA32670.1\|3115771_3117829_+	DNA cytosine methyltransferase	A0A2K9V3X0	Faecalibacterium_phage	4.3e-32	58.7
QAA32671.1\|3117930_3118614_+	virulence protein	A0A2K5B280	Erysipelothrix_phage	5.2e-51	50.2
QAA32672.1\|3118613_3118841_+	DUF4314 domain-containing protein	E4ZFL7	Streptococcus_phage	1.6e-09	44.8
QAA32673.1\|3118976_3119876_+	amidoligase	A0A2K9V489	Faecalibacterium_phage	1.3e-52	41.5
QAA32674.1\|3119914_3120373_+	gamma-glutamylcyclotransferase	G3MAQ5	Bacillus_virus	1.3e-16	35.7
QAA32675.1\|3120365_3120554_+	DUF5049 domain-containing protein	NA	NA	NA	NA
QAA32676.1\|3120640_3122245_+\|terminase	terminase large subunit	A0A2K5B285	Erysipelothrix_phage	1.1e-269	84.8
QAA32677.1\|3122299_3123544_+\|portal	phage portal protein	A0A2K5B287	Erysipelothrix_phage	4.1e-179	72.9
QAA32678.1\|3123544_3124231_+\|protease	Clp protease ClpP	Q6DMU1	Streptococcus_phage	2.2e-73	63.0
QAA32679.1\|3124251_3125445_+\|capsid	phage major capsid protein	A0A2I4R671	Erysipelothrix_phage	1.8e-184	80.3
QAA32680.1\|3125457_3125670_+	Head fiber protein	A0A2K5B289	Erysipelothrix_phage	4.0e-18	68.9
QAA32681.1\|3125697_3126018_+\|head,tail	phage gp6-like head-tail connector protein	A0A2K5B290	Erysipelothrix_phage	2.6e-37	79.0
QAA32682.1\|3126019_3126355_+\|head,tail	head-tail adaptor protein	A0A2K5B291	Erysipelothrix_phage	2.3e-28	55.5
QAA35305.1\|3126360_3126792_+	hypothetical protein	A0A2K5B292	Erysipelothrix_phage	3.3e-43	59.4
QAA32683.1\|3126788_3127130_+	hypothetical protein	A0A2K5B293	Erysipelothrix_phage	9.7e-30	53.2
QAA32684.1\|3127133_3127724_+\|tail	phage tail protein	A0A2K5B294	Erysipelothrix_phage	2.1e-72	68.9
QAA32685.1\|3127735_3128122_+	hypothetical protein	A0A2K5B295	Erysipelothrix_phage	4.7e-41	70.2
QAA32686.1\|3128324_3130745_+\|tail	phage tail protein	A0A2K5B297	Erysipelothrix_phage	1.8e-24	46.9
QAA32687.1\|3130758_3131610_+\|tail	phage tail family protein	E2ELJ6	Clostridium_phage	2.3e-40	35.0
QAA32688.1\|3131612_3133529_+	hypothetical protein	A0A0K2CZQ1	Paenibacillus_phage	5.1e-43	33.0
QAA32689.1\|3133545_3134049_+	hypothetical protein	A0A0C5ABC3	Paenibacillus_phage	1.2e-20	40.9
QAA32690.1\|3134060_3136532_+	fibronectin type III domain-containing protein	NA	NA	NA	NA
QAA32691.1\|3136614_3137055_+\|holin	holin	A0A2K5B2A2	Erysipelothrix_phage	4.1e-49	68.1

DBSCAN-SWA_6

4182106 : 4195153

Acanthamoeba_polyphaga_moumouvirus(16.67%)

integrase

attL 4188031:4188060|attR 4189787:4189816

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA33543.1\|4182106_4185328_-	hypothetical protein	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	2.8e-25	29.9
QAA33544.1\|4185334_4186369_-	RNA polymerase sigma factor RpoD	I1ZBD5	Salisaeta_icosahedral_phage	1.0e-13	26.7
QAA33545.1\|4186508_4187165_-	hypothetical protein	NA	NA	NA	NA
QAA33546.1\|4187462_4188038_-	restriction endonuclease subunit S	NA	NA	NA	NA
4188031:4188060	attL	NA	NA	NA	NA
QAA35343.1\|4188080_4189067_-\|integrase	integrase	A0A2H4JAA2	uncultured_Caudovirales_phage	1.6e-32	28.5
QAA33547.1\|4189158_4190313_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	1.3e-22	36.3
4189787:4189816	attR	NA	NA	NA	NA
QAA33548.1\|4190305_4191817_-	DNA methyltransferase	J7I0U9	Acinetobacter_phage	1.4e-32	33.1
QAA33549.1\|4191838_4195153_-	restriction endonuclease subunit R	Q9T0Y3	Lactobacillus_phage	1.3e-06	21.9

DBSCAN-SWA_7

4559000 : 4570045

Prochlorococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA33823.1\|4559000_4560506_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/inosine monophosphate cyclohydrolase	Q58MG4	Prochlorococcus_phage	5.4e-64	46.1
QAA33824.1\|4560567_4561176_-	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	3.0e-21	36.6
QAA33825.1\|4561163_4562165_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	2.2e-66	42.9
QAA33826.1\|4562172_4563582_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	4.1e-58	33.8
QAA33827.1\|4563605_4564310_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	1.1e-46	44.6
QAA33828.1\|4564309_4564789_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.3e-27	46.2
QAA33829.1\|4565015_4568759_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	6.5e-34	25.3
QAA33830.1\|4568995_4570045_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	1.9e-07	25.8

DBSCAN-SWA_8

6110775 : 6118936

Streptococcus_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA34989.1\|6110775_6112065_-	peptidase S41	A0A0R6PIZ1	Moraxella_phage	2.4e-20	27.9
QAA34990.1\|6112146_6113037_-	ABC transporter permease	NA	NA	NA	NA
QAA34991.1\|6113026_6113713_-	cell division ATP-binding protein FtsE	G9BWD6	Planktothrix_phage	2.0e-26	33.7
QAA34992.1\|6113940_6114786_-	hypothetical protein	M1Q1P6	Streptococcus_phage	4.0e-32	34.1
QAA34993.1\|6114825_6115680_-	hypothetical protein	M1Q1P6	Streptococcus_phage	9.2e-37	36.5
QAA34994.1\|6116184_6117033_-	hypothetical protein	M1Q1P6	Streptococcus_phage	1.9e-34	32.0
QAA34995.1\|6117167_6118112_-	transketolase	NA	NA	NA	NA
QAA34996.1\|6118111_6118936_-	transketolase	G9E5U1	Micromonas_pusilla_virus	1.7e-11	32.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025746

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CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection