CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035006	Staphylococcus aureus strain PCFH-226 plasmid pP541, complete sequence	0 crisprs	NA	0	0	0	0
CP035005	Staphylococcus aureus strain PCFH-226 chromosome, complete genome	9 crisprs	NA	4	1	0	0

Cas Category Instructions

Results visualization

1. CP035005

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CRISPR-Cas detection and classification

Crispr_ID: CP035005_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035005_1

165915-166127

Orphan

Consensus_repeat	Method
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP035005_1

>merge|CP035005|1|165915-166127|CRISPRCasFinder
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCAAAGTAACATGGCACCAACACCAAGCTCCCACAACAGCACATCAAAGTAGCATGGCACGACACCAAGCTTCCACAACAGCACATCATAGCACTACATCAAGACGCATCGTGGTACCAGCACATCAAAGTAACATGTCATGACACCAAGTTCCCGCAACAATACGTCA

>CP035005|1|1|165915-166127|CRISPRCasFinder
CATCAAAGTAGCATGGCATGACACCAAGCTTCCACAACAGCACATCA	AAGTAACATGGCACCAACACCAAGCTCCCACAACAGCA
CATCAAAGTAGCATGGCACGACACCAAGCTTCCACAACAGCACATCA	TAGCACTACATCAAGACGCATCGTGGTACCAGCA
CATCAAAGTAACATGTCATGACACCAAGTTCCCGCAACAATACGTCA

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Crispr_ID: CP035005_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035005_2

495260-495342

Orphan

Consensus_repeat	Method
GTAAGCTGACTTTTTCGTCAGCTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035005_2

>merge|CP035005|2|495260-495342|CRISPRCasFinder
GTAAGCTGACTTTTTCGTCAGCTTCTGTGTTGGGGCCCACCCCAACTTGCACATTATAGTAAGCTGACTTTTTCGTCAGCTTC

>CP035005|2|2|495260-495342|CRISPRCasFinder
GTAAGCTGACTTTTTCGTCAGCTTC	TGTGTTGGGGCCCACCCCAACTTGCACATTATA
GTAAGCTGACTTTTTCGTCAGCTTC

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Crispr_ID: CP035005_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035005_3

1375637-1375717

Orphan

Consensus_repeat	Method
GGGAGTGGGAGAGAAATGATAAAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035005_3

>merge|CP035005|3|1375637-1375717|CRISPRCasFinder
GGGAGTGGGAGAGAAATGATAAAGAATCACTTATGCTTTATTATGTATTGGTTCTTGGGAGTGGGACAGAAATGATAAAGA

>CP035005|3|3|1375637-1375717|CRISPRCasFinder
GGGAGTGGGAGAGAAATGATAAAGA	ATCACTTATGCTTTATTATGTATTGGTTCTT
GGGAGTGGGACAGAAATGATAAAGA

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Crispr_ID: CP035005_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035005_4

1380123-1380202

Orphan

Consensus_repeat	Method
AATTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035005_4

>merge|CP035005|4|1380123-1380202|CRISPRCasFinder
AATTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGG

>CP035005|4|4|1380123-1380202|CRISPRCasFinder
AATTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACACAGAGAAATTGGATTCCCA
ATTTCTACAGACAATGCAAGTTGG

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Crispr_ID: CP035005_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035005_5

1589836-1589944

Orphan

Consensus_repeat	Method
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035005_5

>merge|CP035005|5|1589836-1589944|CRISPRCasFinder
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTTAAAGCCTCTTGAACTCTAGTGATTAGAGGCTTTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT

>CP035005|5|5|1589836-1589944|CRISPRCasFinder
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT	AAAGCCTCTTGAACTCTAGTGATTAGAGGCT
TTTATGCAGTTGTGCGGTAGCATCCAACTGCGTTCCTTT

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Crispr_ID: CP035005_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035005_6

2542168-2542301

Orphan

Consensus_repeat	Method
TATTGAAGAAGATACAA	PILER-CR

2 spacers

The CRISPR arrays of CP035005_6

>merge|CP035005|6|2542168-2542301|PILER-CR
TATTGAAGAAGATACAAACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGATTTTGAAGAAGATACACTTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAACGATTGAAGAAGATACAA

>CP035005|6|1|2542168-2542301|PILER-CR
TATTGAAGAAGATACAA	ACAAAGATAAACCTAATTATCAATTTGGTGGACACAACAGTGTTGA
TTTTGAAGAAGATACAC	TTCCAAAAGTAAGTGGTCAAAATGAAGGTCAACAAAC
GATTGAAGAAGATACAA

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Crispr_ID: CP035005_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035005_7

2566765-2566859

Orphan

Consensus_repeat	Method
TTGCTTCGCAACAACTGCATAAGAGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035005_7

>merge|CP035005|7|2566765-2566859|CRISPRCasFinder
TTGCTTCGCAACAACTGCATAAGAGCCTCTAGTAATTAAAATTACAGTTTTAGAGGAATACAGTTGCTTGCTTCGCACCAACTGCATAAGAGCCT

>CP035005|7|6|2566765-2566859|CRISPRCasFinder
TTGCTTCGCAACAACTGCATAAGAGCCT	CTAGTAATTAAAATTACAGTTTTAGAGGAATACAGTTGC
TTGCTTCGCACCAACTGCATAAGAGCCT

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Crispr_ID: CP035005_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035005_8

2611112-2611190

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035005_8

>merge|CP035005|8|2611112-2611190|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACACAGTAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGAGCCCCAACA

>CP035005|8|7|2611112-2611190|CRISPRCasFinder
TGCAAGTTGGCGGGGCCCCAACA	CAGTAGCTGGCGGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGAGCCCCAACA

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Crispr_ID: CP035005_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035005_9

2742846-2742931

Orphan

Consensus_repeat	Method
CCAACTTGCACATTATTGTAAGCTGACTTT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035005_9

>merge|CP035005|9|2742846-2742931|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTTCCGCCAGCTTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTT

>CP035005|9|8|2742846-2742931|CRISPRCasFinder
CCAACTTGCACATTATTGTAAGCTGACTTT	CCGCCAGCTTCTATGTTGGGGCCCCG
CCAACTTGCACATTATTGTAAGCTGACTTT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP035005_9	9.1\|2742876\|26\|CP035005\|CRISPRCasFinder	2742876-2742901	26	CP035005.1	624276-624301	0	1.0
CP035005_4	4.1\|1380147\|32\|CP035005\|CRISPRCasFinder	1380147-1380178	32	CP035005.1	1439564-1439595	1	0.969
CP035005_4	4.1\|1380147\|32\|CP035005\|CRISPRCasFinder	1380147-1380178	32	CP035005.1	2345196-2345227	1	0.969
CP035005_4	4.1\|1380147\|32\|CP035005\|CRISPRCasFinder	1380147-1380178	32	CP035005.1	2462170-2462201	1	0.969
CP035005_4	4.1\|1380147\|32\|CP035005\|CRISPRCasFinder	1380147-1380178	32	CP035005.1	2655978-2656009	1	0.969
CP035005_9	9.1\|2742876\|26\|CP035005\|CRISPRCasFinder	2742876-2742901	26	CP035005.1	1380035-1380060	1	0.962
CP035005_3	3.1\|1375662\|31\|CP035005\|CRISPRCasFinder	1375662-1375692	31	CP035005.1	1431874-1431904	2	0.935
CP035005_4	4.1\|1380147\|32\|CP035005\|CRISPRCasFinder	1380147-1380178	32	CP035005.1	1417343-1417374	2	0.938
CP035005_4	4.1\|1380147\|32\|CP035005\|CRISPRCasFinder	1380147-1380178	32	CP035005.1	2345252-2345283	2	0.938
CP035005_8	8.1\|2611135\|33\|CP035005\|CRISPRCasFinder	2611135-2611167	33	CP035005.1	1998695-1998727	2	0.939
CP035005_9	9.1\|2742876\|26\|CP035005\|CRISPRCasFinder	2742876-2742901	26	CP035005.1	154990-155015	2	0.923
CP035005_9	9.1\|2742876\|26\|CP035005\|CRISPRCasFinder	2742876-2742901	26	CP035005.1	889204-889229	2	0.923
CP035005_9	9.1\|2742876\|26\|CP035005\|CRISPRCasFinder	2742876-2742901	26	CP035005.1	1330955-1330980	2	0.923
CP035005_9	9.1\|2742876\|26\|CP035005\|CRISPRCasFinder	2742876-2742901	26	CP035005.1	1375890-1375915	2	0.923

1. spacer 9.1|2742876|26|CP035005|CRISPRCasFinder matches to position: 624276-624301, mismatch: 0, identity: 1.0

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
**************************

2. spacer 4.1|1380147|32|CP035005|CRISPRCasFinder matches to position: 1439564-1439595, mismatch: 1, identity: 0.969

cggggccccaacacagagaaattggattccca	CRISPR spacer
cggggccccaacaaagagaaattggattccca	Protospacer
************* ******************

3. spacer 4.1|1380147|32|CP035005|CRISPRCasFinder matches to position: 2345196-2345227, mismatch: 1, identity: 0.969

cggggccccaacacagagaaattggattccca	CRISPR spacer
cggggccccaacaaagagaaattggattccca	Protospacer
************* ******************

4. spacer 4.1|1380147|32|CP035005|CRISPRCasFinder matches to position: 2462170-2462201, mismatch: 1, identity: 0.969

cggggccccaacacagagaaattggattccca	CRISPR spacer
cggggccccaacaaagagaaattggattccca	Protospacer
************* ******************

5. spacer 4.1|1380147|32|CP035005|CRISPRCasFinder matches to position: 2655978-2656009, mismatch: 1, identity: 0.969

cggggccccaacacagagaaattggattccca	CRISPR spacer
cggggccccaacaaagagaaattggattccca	Protospacer
************* ******************

6. spacer 9.1|2742876|26|CP035005|CRISPRCasFinder matches to position: 1380035-1380060, mismatch: 1, identity: 0.962

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgtcagcttctatgttggggccccg	Protospacer
***.**********************

7. spacer 3.1|1375662|31|CP035005|CRISPRCasFinder matches to position: 1431874-1431904, mismatch: 2, identity: 0.935

atcacttatgctttattatgtattggttctt	CRISPR spacer
atcactaatgatttattatgtattggttctt	Protospacer
****** *** ********************

8. spacer 4.1|1380147|32|CP035005|CRISPRCasFinder matches to position: 1417343-1417374, mismatch: 2, identity: 0.938

cggggccccaacacagagaaattggattccca	CRISPR spacer
cggggccccaacatagagaaattggatttcca	Protospacer
*************.**************.***

9. spacer 4.1|1380147|32|CP035005|CRISPRCasFinder matches to position: 2345252-2345283, mismatch: 2, identity: 0.938

cggggccccaacacagagaaattggattccca	CRISPR spacer
cggggccccaacaaagagaaattggattctca	Protospacer
************* ***************.**

10. spacer 8.1|2611135|33|CP035005|CRISPRCasFinder matches to position: 1998695-1998727, mismatch: 2, identity: 0.939

cagtagctggcggaaagtcagcttacaataatg	CRISPR spacer
cagaagctggcgaaaagtcagcttacaataatg	Protospacer
*** ********.********************

11. spacer 9.1|2742876|26|CP035005|CRISPRCasFinder matches to position: 154990-155015, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagcttttgtgttggggccccg	Protospacer
**********.*.*************

12. spacer 9.1|2742876|26|CP035005|CRISPRCasFinder matches to position: 889204-889229, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgccagtttctgtgttggggccccg	Protospacer
*******.****.*************

13. spacer 9.1|2742876|26|CP035005|CRISPRCasFinder matches to position: 1330955-1330980, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccaccagcttctgtgttggggccccg	Protospacer
**.*********.*************

14. spacer 9.1|2742876|26|CP035005|CRISPRCasFinder matches to position: 1375890-1375915, mismatch: 2, identity: 0.923

ccgccagcttctatgttggggccccg	CRISPR spacer
ccgcctgctactatgttggggccccg	Protospacer
***** *** ****************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035005_1	1.2\|166047\|34\|CP035005\|CRISPRCasFinder	166047-166080	34	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	68639-68672	11	0.676
CP035005_1	1.2\|166047\|34\|CP035005\|CRISPRCasFinder	166047-166080	34	KY000079	Acinetobacter phage AM24, complete genome	74925-74958	11	0.676

1. spacer 1.2|166047|34|CP035005|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************.....

2. spacer 1.2|166047|34|CP035005|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tagcactacatcaagacgcatcgtggtaccagca	CRISPR spacer
ttctaccacttcaagacgcatcgtggtattgatc	Protospacer
*  .**.** ******************.....

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage