CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035003	Staphylococcus aureus strain PCFA-221 chromosome, complete genome	11 crisprs	NA	7	4	0	0
CP035004	Staphylococcus aureus strain PCFA-221 plasmid pP541, complete sequence	0 crisprs	NA	0	0	0	0

Cas Category Instructions

Results visualization

1. CP035003

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP035003_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035003_1

592454-592536

Orphan

Consensus_repeat	Method
GAAGCTGACGAAAAAGTCAGCTTAC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035003_1

>merge|CP035003|1|592454-592536|CRISPRCasFinder
GAAGCTGACGAAAAAGTCAGCTTACTATAATGTGCAAGTTGGGGTGGGCCCCAACACAGAAGCTGACGAAAAAGTCAGCTTAC

>CP035003|1|1|592454-592536|CRISPRCasFinder
GAAGCTGACGAAAAAGTCAGCTTAC	TATAATGTGCAAGTTGGGGTGGGCCCCAACACA
GAAGCTGACGAAAAAGTCAGCTTAC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP035003_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035003_2

680808-680901

Orphan

Consensus_repeat	Method
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035003_2

>merge|CP035003|2|680808-680901|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAGAGAATTTCAAAAAAGAAATTCTACAGGCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

>CP035003|2|2|680808-680901|CRISPRCasFinder
GCAATGCGCGTTGGGGTGTGGGGCCCCAACATAG	AGAATTTCAAAAAAGAAATTCTACAG
GCAATGCGCGTTGGGGTGTGGGGCCTCAACATAG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP035003_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035003_3

921668-921880

Orphan

Consensus_repeat	Method
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP035003_3

>merge|CP035003|3|921668-921880|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATGTGCTGGTACCACGATGCGTCTTGATGTAGTGCTATGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATGTGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTTTGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

>CP035003|3|3|921668-921880|CRISPRCasFinder
TGACGTATTGTTGCGGGAACTTGGTGTCATGACATGTTACTTTGATG	TGCTGGTACCACGATGCGTCTTGATGTAGTGCTA
TGATGTGCTGTTGTGGAAGCTTGGTGTCGTGCCATGCTACTTTGATG	TGCTGTTGTGGGAGCTTGGTGTTGGTGCCATGTTACTT
TGATGTGCTGTTGTGGAAGCTTGGTGTCATGCCATGCTACTTTGATG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP035003_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035003_4

1141275-1141360

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035003_4

>merge|CP035003|4|1141275-1141360|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>CP035003|4|4|1141275-1141360|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP035003_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035003_5

1317347-1317441

Orphan

Consensus_repeat	Method
AGGCTCTTATGCAGTTGGTGCGAAGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035003_5

>merge|CP035003|5|1317347-1317441|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAAGCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAGAGGCTCTTATGCAGTTGTTGCGAAGCAA

>CP035003|5|5|1317347-1317441|CRISPRCasFinder
AGGCTCTTATGCAGTTGGTGCGAAGCAA	GCAACTGTATTCCTCTAAAACTGTAATTTTAATTACTAG
AGGCTCTTATGCAGTTGTTGCGAAGCAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP035003_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035003_6

1518533-1518680

Orphan

Consensus_repeat	Method
TTGAAACACTTAATGATGACGAA	PILER-CR

2 spacers

The CRISPR arrays of CP035003_6

>merge|CP035003|6|1518533-1518680|PILER-CR
TGAACCACTTAATGATGTCGAAGTGCTCAATGAACCAGATGTACTTGTTGAAGTCGAACCACTTGTCGATTTTGAATCACTTAATGAATCAGATTCACTCACGCTTTCCGAACTTCTTAGTGACGTCGATACACTTAATGATGACGAA

>CP035003|6|1|1518533-1518680|PILER-CR
TGAACCACTTAATGATGTCGAAG	TGCTCAATGAACCAGATGTACTTGTTGAAGTCGAACCACTTGTCGATTT
TGAATCACTTAATGAATCAGATT	CACTCACGCTTTCCGAACTTCTTAGTGACGTCGATACA
CTTAATGATGACGAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP035003_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035003_7

1887156-1887355

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	CRISPRCasFinder

3 spacers

The CRISPR arrays of CP035003_7

>merge|CP035003|7|1887156-1887355|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCTGGCGAAAATACAGCTTACAATAATGTGCGAGTTGGCAGGCCTCCAACACAGAGAAATTGGAACAGCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTAGCGAAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGGCCCCAACACAGAAGCT

>CP035003|7|6|1887156-1887355|CRISPRCasFinder
GTTATATTGGCGGATCCCCAACACAGAAGCT	GGCGAAAATACAGCTTACAATAATG
TGCGAGTTGGCAGGCCTCCAACACAGAGAAA	TTGGAACAGCAATTTCTACAGACAA
TGCAAGTTGGCGGGGCCCCAACACAGAAGCT	AGCGAAAAGTCAGCTTACAATAATGT
GCAAGTTGGCGGGGGCCCCAACACAGAAGCT

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP035003_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035003_8

2255615-2255723

Orphan

Consensus_repeat	Method
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035003_8

>merge|CP035003|8|2255615-2255723|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAAAGCCTCTAATCACTAGAGTTCAAGAGGCTTTAAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

>CP035003|8|7|2255615-2255723|CRISPRCasFinder
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA	AGCCTCTAATCACTAGAGTTCAAGAGGCTTT
AAAGGAACGCAGTTGGATGCTACCGCACAACTGCATAAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP035003_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035003_9

2417900-2417982

Orphan

Consensus_repeat	Method
CACCCCAACTCGCATTGCTTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035003_9

>merge|CP035003|9|2417900-2417982|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAATTTCTTTTCGAAATTCTCTGTGTTGGGGCCCCACCCCAACTCGCATTGCCTGTAGAA

>CP035003|9|8|2417900-2417982|CRISPRCasFinder
CACCCCAACTCGCATTGCTTGTAGAA	TTTCTTTTCGAAATTCTCTGTGTTGGGGCCC
CACCCCAACTCGCATTGCCTGTAGAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP035003_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035003_10

2465355-2465434

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035003_10

>merge|CP035003|10|2465355-2465434|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAA

>CP035003|10|9|2465355-2465434|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTGTGTTGGGGCCC
CGCCAACTTGCATTGTCTGTAGAA

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP035003_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035003_11

2469842-2469922

Orphan

Consensus_repeat	Method
TCTTTATCATTTCTGTCCCACTCCC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035003_11

>merge|CP035003|11|2469842-2469922|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCCAAGAACCAATACATAATAAAGCATAAGTGATTCTTTATCATTTCTCTCCCACTCCC

>CP035003|11|10|2469842-2469922|CRISPRCasFinder
TCTTTATCATTTCTGTCCCACTCCC	AAGAACCAATACATAATAAAGCATAAGTGAT
TCTTTATCATTTCTCTCCCACTCCC

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP035003_2	2.1\|680842\|26\|CP035003\|CRISPRCasFinder	680842-680867	26	CP035003.1	778605-778630	0	1.0
CP035003_4	4.1\|1141305\|26\|CP035003\|CRISPRCasFinder	1141305-1141330	26	CP035003.1	463495-463520	0	1.0
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	778558-778588	0	1.0
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	778668-778698	0	1.0
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	846925-846955	0	1.0
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	2514774-2514804	0	1.0
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	2553605-2553635	0	1.0
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	463543-463574	0	1.0
CP035003_4	4.1\|1141305\|26\|CP035003\|CRISPRCasFinder	1141305-1141330	26	CP035003.1	2465499-2465524	1	0.962
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	589991-590021	1	0.968
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	680769-680799	1	0.968
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	1096099-1096129	1	0.968
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	1141193-1141223	1	0.968
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	1869284-1869314	1	0.968
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	1964270-1964300	1	0.968
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	2247010-2247040	1	0.968
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	2371583-2371613	1	0.968
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	2465435-2465465	1	0.968
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	2648979-2649009	1	0.968
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	2749277-2749307	1	0.968
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	2749331-2749361	1	0.968
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	1228199-1228230	1	0.969
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	1422007-1422038	1	0.969
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	1538977-1539008	1	0.969
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	2247067-2247098	1	0.969
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	2404630-2404661	1	0.969
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	2417983-2418014	1	0.969
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	2675117-2675148	1	0.969
CP035003_4	4.1\|1141305\|26\|CP035003\|CRISPRCasFinder	1141305-1141330	26	CP035003.1	198567-198592	2	0.923
CP035003_4	4.1\|1141305\|26\|CP035003\|CRISPRCasFinder	1141305-1141330	26	CP035003.1	932780-932805	2	0.923
CP035003_4	4.1\|1141305\|26\|CP035003\|CRISPRCasFinder	1141305-1141330	26	CP035003.1	1273059-1273084	2	0.923
CP035003_4	4.1\|1141305\|26\|CP035003\|CRISPRCasFinder	1141305-1141330	26	CP035003.1	2469644-2469669	2	0.923
CP035003_4	4.1\|1141305\|26\|CP035003\|CRISPRCasFinder	1141305-1141330	26	CP035003.1	2514579-2514604	2	0.923
CP035003_7	7.1\|1887187\|25\|CP035003\|CRISPRCasFinder	1887187-1887211	25	CP035003.1	1887356-1887380	2	0.92
CP035003_7	7.2\|1887243\|25\|CP035003\|CRISPRCasFinder	1887243-1887267	25	CP035003.1	932742-932766	2	0.92
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	202896-202926	2	0.935
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	242823-242853	2	0.935
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	1106847-1106877	2	0.935
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	1106902-1106932	2	0.935
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	1539033-1539063	2	0.935
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	2426907-2426937	2	0.935
CP035003_9	9.1\|2417926\|31\|CP035003\|CRISPRCasFinder	2417926-2417956	31	CP035003.1	2469543-2469573	2	0.935
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	198398-198429	2	0.938
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	590106-590137	2	0.938
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	846868-846899	2	0.938
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	1538921-1538952	2	0.938
CP035003_10	10.1\|2465379\|32\|CP035003\|CRISPRCasFinder	2465379-2465410	32	CP035003.1	2426851-2426882	2	0.938
CP035003_11	11.1\|2469867\|31\|CP035003\|CRISPRCasFinder	2469867-2469897	31	CP035003.1	2412323-2412353	2	0.935

1. spacer 2.1|680842|26|CP035003|CRISPRCasFinder matches to position: 778605-778630, mismatch: 0, identity: 1.0

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaagaaattctacag	Protospacer
**************************

2. spacer 4.1|1141305|26|CP035003|CRISPRCasFinder matches to position: 463495-463520, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

3. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 778558-778588, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

4. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 778668-778698, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

5. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 846925-846955, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

6. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 2514774-2514804, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

7. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 2553605-2553635, mismatch: 0, identity: 1.0

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttggggccc	Protospacer
*******************************

8. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 463543-463574, mismatch: 0, identity: 1.0

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctgtgttggggccc	Protospacer
********************************

9. spacer 4.1|1141305|26|CP035003|CRISPRCasFinder matches to position: 2465499-2465524, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctgacgg	Protospacer
**********************.***

10. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 589991-590021, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

11. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 680769-680799, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttgtcgaaattctctgtgttggggccc	Protospacer
****** ************************

12. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 1096099-1096129, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

13. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 1141193-1141223, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctgtgttggggccc	Protospacer
********.**********************

14. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 1869284-1869314, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

15. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 1964270-1964300, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

16. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 2247010-2247040, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtgttgggcccc	Protospacer
*************************** ***

17. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 2371583-2371613, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

18. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 2465435-2465465, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctatgttggggccc	Protospacer
*******************.***********

19. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 2648979-2649009, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctttgttggggccc	Protospacer
******************* ***********

20. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 2749277-2749307, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

21. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 2749331-2749361, mismatch: 1, identity: 0.968

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctattcgaaattctctgtgttggggccc	Protospacer
***** *************************

22. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 1228199-1228230, mismatch: 1, identity: 0.969

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctttgttggggccc	Protospacer
******************** ***********

23. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 1422007-1422038, mismatch: 1, identity: 0.969

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctttgttggggccc	Protospacer
******************** ***********

24. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 1538977-1539008, mismatch: 1, identity: 0.969

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctttgttggggccc	Protospacer
******************** ***********

25. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 2247067-2247098, mismatch: 1, identity: 0.969

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctttgttggggccc	Protospacer
******************** ***********

26. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 2404630-2404661, mismatch: 1, identity: 0.969

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctttgttggggccc	Protospacer
******************** ***********

27. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 2417983-2418014, mismatch: 1, identity: 0.969

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctttgttggggccc	Protospacer
******************** ***********

28. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 2675117-2675148, mismatch: 1, identity: 0.969

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctttgttggggccc	Protospacer
******************** ***********

29. spacer 4.1|1141305|26|CP035003|CRISPRCasFinder matches to position: 198567-198592, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaaactggcgg	Protospacer
*************.****.*******

30. spacer 4.1|1141305|26|CP035003|CRISPRCasFinder matches to position: 932780-932805, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacaaaagctggcgg	Protospacer
*************.*.**********

31. spacer 4.1|1141305|26|CP035003|CRISPRCasFinder matches to position: 1273059-1273084, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagtagctggcgg	Protospacer
*************.** *********

32. spacer 4.1|1141305|26|CP035003|CRISPRCasFinder matches to position: 2469644-2469669, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagtagcaggcgg	Protospacer
**************** *** *****

33. spacer 4.1|1141305|26|CP035003|CRISPRCasFinder matches to position: 2514579-2514604, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggtgg	Protospacer
*************.*********.**

34. spacer 7.1|1887187|25|CP035003|CRISPRCasFinder matches to position: 1887356-1887380, mismatch: 2, identity: 0.92

ggcgaaaatacagcttacaataatg	CRISPR spacer
ggcgaaaagtcagcttacaataatg	Protospacer
********  ***************

35. spacer 7.2|1887243|25|CP035003|CRISPRCasFinder matches to position: 932742-932766, mismatch: 2, identity: 0.92

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacaccaattcctacagacaa	Protospacer
******** *****.**********

36. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 202896-202926, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcggaattctctgtgttggagccc	Protospacer
**********.***************.****

37. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 242823-242853, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaaatctctgtgttgaggccc	Protospacer
************* ***********.*****

38. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 1106847-1106877, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctatgttggggccc	Protospacer
********.**********.***********

39. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 1106902-1106932, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttctttttgaaattctctatgttggggccc	Protospacer
********.**********.***********

40. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 1539033-1539063, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaattctctgtattgggggcc	Protospacer
*********************.****** **

41. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 2426907-2426937, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcatttcgaaattctctatgttggggccc	Protospacer
**** **************.***********

42. spacer 9.1|2417926|31|CP035003|CRISPRCasFinder matches to position: 2469543-2469573, mismatch: 2, identity: 0.935

tttcttttcgaaattctctgtgttggggccc	CRISPR spacer
tttcttttcgaaatcctctgtgttggggacc	Protospacer
**************.************* **

43. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 198398-198429, mismatch: 2, identity: 0.938

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attggggagccaatttctctgtgttggggccc	Protospacer
******.* ***********************

44. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 590106-590137, mismatch: 2, identity: 0.938

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attggaaatccaatttctctatgttggggccc	Protospacer
*****.**************.***********

45. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 846868-846899, mismatch: 2, identity: 0.938

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attgggaatccaatttctctttgttgggcccc	Protospacer
******************** ******* ***

46. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 1538921-1538952, mismatch: 2, identity: 0.938

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attgagaatccaatttctctttgttggggccc	Protospacer
****.*************** ***********

47. spacer 10.1|2465379|32|CP035003|CRISPRCasFinder matches to position: 2426851-2426882, mismatch: 2, identity: 0.938

attgggaatccaatttctctgtgttggggccc	CRISPR spacer
attggaaatccaatttctctatgttggggccc	Protospacer
*****.**************.***********

48. spacer 11.1|2469867|31|CP035003|CRISPRCasFinder matches to position: 2412323-2412353, mismatch: 2, identity: 0.935

aagaaccaatacataataaagcataagtgat	CRISPR spacer
aagaaccaatacataataaatcattagtgat	Protospacer
******************** *** ******

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035003_7	7.1\|1887187\|25\|CP035003\|CRISPRCasFinder	1887187-1887211	25	NC_014792	Enterobacteria phage vB_EcoM-VR7, complete genome	154175-154199	3	0.88
CP035003_2	2.1\|680842\|26\|CP035003\|CRISPRCasFinder	680842-680867	26	NZ_CP053838	Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence	17379-17404	4	0.846
CP035003_2	2.1\|680842\|26\|CP035003\|CRISPRCasFinder	680842-680867	26	NZ_CP017210	Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence	2023-2048	4	0.846
CP035003_7	7.2\|1887243\|25\|CP035003\|CRISPRCasFinder	1887243-1887267	25	MW117966	Synechococcus phage S-H9-1, complete genome	42366-42390	4	0.84
CP035003_2	2.1\|680842\|26\|CP035003\|CRISPRCasFinder	680842-680867	26	NC_008443	Borrelia burgdorferi strain Ip21 plasmid, complete sequence	5652-5677	5	0.808
CP035003_2	2.1\|680842\|26\|CP035003\|CRISPRCasFinder	680842-680867	26	NC_010631	Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence	3460-3485	5	0.808
CP035003_2	2.1\|680842\|26\|CP035003\|CRISPRCasFinder	680842-680867	26	NC_010632	Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence	13739-13764	5	0.808
CP035003_7	7.2\|1887243\|25\|CP035003\|CRISPRCasFinder	1887243-1887267	25	NZ_CP038259	Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence	11151-11175	5	0.8
CP035003_2	2.1\|680842\|26\|CP035003\|CRISPRCasFinder	680842-680867	26	MK448662	Streptococcus satellite phage Javan97, complete genome	6198-6223	6	0.769
CP035003_7	7.2\|1887243\|25\|CP035003\|CRISPRCasFinder	1887243-1887267	25	NZ_CP047617	Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence	79395-79419	6	0.76
CP035003_3	3.1\|921715\|34\|CP035003\|CRISPRCasFinder	921715-921748	34	NC_027332	Acinetobacter phage YMC13/03/R2096, complete genome	68639-68672	11	0.676
CP035003_3	3.1\|921715\|34\|CP035003\|CRISPRCasFinder	921715-921748	34	KY000079	Acinetobacter phage AM24, complete genome	74925-74958	11	0.676

1. spacer 7.1|1887187|25|CP035003|CRISPRCasFinder matches to NC_014792 (Enterobacteria phage vB_EcoM-VR7, complete genome) position: , mismatch: 3, identity: 0.88

ggcgaaaatacagcttacaataatg	CRISPR spacer
gacgaaaatacatattacaataatg	Protospacer
*.**********  ***********

2. spacer 2.1|680842|26|CP035003|CRISPRCasFinder matches to NZ_CP053838 (Aliiarcobacter faecis strain CCUG 66484 plasmid pAFAEC, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
agaatttcaaaaaataaaatctattg	Protospacer
************** *** ****. *

3. spacer 2.1|680842|26|CP035003|CRISPRCasFinder matches to NZ_CP017210 (Borreliella burgdorferi strain B331 plasmid B331_cp9, complete sequence) position: , mismatch: 4, identity: 0.846

agaatttcaaaaaagaaattctacag	CRISPR spacer
acaatttcaaaaaagaaatattacac	Protospacer
* ***************** .****

4. spacer 7.2|1887243|25|CP035003|CRISPRCasFinder matches to MW117966 (Synechococcus phage S-H9-1, complete genome) position: , mismatch: 4, identity: 0.84

ttggaacagcaatttctacagacaa	CRISPR spacer
ttggaacagcaatttctactggtat	Protospacer
******************* *..*

5. spacer 2.1|680842|26|CP035003|CRISPRCasFinder matches to NC_008443 (Borrelia burgdorferi strain Ip21 plasmid, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
ccaatttcaaaaaagaaattttccac	Protospacer
  ******************.* **

6. spacer 2.1|680842|26|CP035003|CRISPRCasFinder matches to NC_010631 (Nostoc punctiforme PCC 73102 plasmid pNPUN01, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

7. spacer 2.1|680842|26|CP035003|CRISPRCasFinder matches to NC_010632 (Nostoc punctiforme PCC 73102 plasmid pNPUN02, complete sequence) position: , mismatch: 5, identity: 0.808

agaatttcaaaaaagaaattctacag	CRISPR spacer
tgaatgtcaaaaaagaaattcttgaa	Protospacer
 **** ****************  *.

8. spacer 7.2|1887243|25|CP035003|CRISPRCasFinder matches to NZ_CP038259 (Acinetobacter baumannii strain 39741 plasmid pEH_gr13, complete sequence) position: , mismatch: 5, identity: 0.8

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctccagaggt	Protospacer
.**************** **** .

9. spacer 2.1|680842|26|CP035003|CRISPRCasFinder matches to MK448662 (Streptococcus satellite phage Javan97, complete genome) position: , mismatch: 6, identity: 0.769

agaatttcaaaaaagaaattctacag	CRISPR spacer
gctttttcaaaaaagaaattctagac	Protospacer
.   ******************* *

10. spacer 7.2|1887243|25|CP035003|CRISPRCasFinder matches to NZ_CP047617 (Lactococcus raffinolactis strain Lr_19_5 plasmid pLraf_19_5_1, complete sequence) position: , mismatch: 6, identity: 0.76

ttggaacagcaatttctacagacaa	CRISPR spacer
ctggaacagcaatttctacattatc	Protospacer
.*******************

11. spacer 3.1|921715|34|CP035003|CRISPRCasFinder matches to NC_027332 (Acinetobacter phage YMC13/03/R2096, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

12. spacer 3.1|921715|34|CP035003|CRISPRCasFinder matches to KY000079 (Acinetobacter phage AM24, complete genome) position: , mismatch: 11, identity: 0.676

tgctggtaccacgatgcgtcttgatgtagtgcta	CRISPR spacer
gatcaataccacgatgcgtcttgaagtggtagaa	Protospacer
 .....****************** **.**.  *

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage