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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035037 Leucobacter sp. DSM 101948 chromosome, complete genome 4 crisprs csa3,DEDDh,WYL,cas3 0 1 6 0

Results visualization

1. CP035037
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035037_1 158652-158768 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035037_2 412803-412920 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035037_3 1115785-1115901 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035037_5 2458512-2458613 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035037_4 4.1|1997767|28|CP035037|CRISPRCasFinder 1997767-1997794 28 NZ_AP014686 Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence 12451-12478 5 0.821
CP035037_4 4.1|1997767|28|CP035037|CRISPRCasFinder 1997767-1997794 28 NZ_CP006368 Aureimonas sp. AU20 plasmid pAU20a, complete sequence 222625-222652 5 0.821
CP035037_4 4.1|1997767|28|CP035037|CRISPRCasFinder 1997767-1997794 28 NZ_CP021372 Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence 457029-457056 6 0.786
CP035037_4 4.1|1997767|28|CP035037|CRISPRCasFinder 1997767-1997794 28 NZ_CP017244 Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence 1587544-1587571 6 0.786
CP035037_4 4.1|1997767|28|CP035037|CRISPRCasFinder 1997767-1997794 28 MF959999 Marinobacter phage PS3, complete genome 18740-18767 6 0.786

1. spacer 4.1|1997767|28|CP035037|CRISPRCasFinder matches to NZ_AP014686 (Bradyrhizobium diazoefficiens strain NK6 plasmid pNK6b, complete sequence) position: , mismatch: 5, identity: 0.821

ccagttcgaaggcgggcagagcgccgac	CRISPR spacer
cggccgcgaaggcgggcagagcgccgac	Protospacer
* . . **********************

2. spacer 4.1|1997767|28|CP035037|CRISPRCasFinder matches to NZ_CP006368 (Aureimonas sp. AU20 plasmid pAU20a, complete sequence) position: , mismatch: 5, identity: 0.821

ccagttcgaaggcgggcagagcgccgac	CRISPR spacer
gccggtcgaaggcgagcagagcgccggc	Protospacer
 * * *********.***********.*

3. spacer 4.1|1997767|28|CP035037|CRISPRCasFinder matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 6, identity: 0.786

ccagttcgaaggcgggcagagcgccgac	CRISPR spacer
gatgttcgaaggcgggcacagcgcccag	Protospacer
   *************** ****** * 

4. spacer 4.1|1997767|28|CP035037|CRISPRCasFinder matches to NZ_CP017244 (Rhizobium etli 8C-3 plasmid pRsp8C3c, complete sequence) position: , mismatch: 6, identity: 0.786

ccagttcgaaggcgggcagagcgccgac	CRISPR spacer
ccagttcgaaggcggccacagcgtccga	Protospacer
*************** ** ****.* . 

5. spacer 4.1|1997767|28|CP035037|CRISPRCasFinder matches to MF959999 (Marinobacter phage PS3, complete genome) position: , mismatch: 6, identity: 0.786

ccagttcgaaggcgggcagagcgccgac	CRISPR spacer
cgaattcgaaggcgggcagaacgccttt	Protospacer
* *.****************.****  .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 157274 : 245579 67 uncultured_virus(23.81%) transposase,holin,protease,tRNA NA
DBSCAN-SWA_2 748873 : 793077 56 Propionibacterium_phage(30.77%) transposase,portal,integrase,protease attL 741086:741103|attR 790927:790944
DBSCAN-SWA_3 1205066 : 1243435 49 Arthrobacter_phage(27.27%) terminase,transposase,portal,capsid,integrase attL 1201078:1201114|attR 1243561:1243597
DBSCAN-SWA_4 2283124 : 2330744 48 Burkholderia_virus(25.0%) transposase,capsid,protease,tRNA NA
DBSCAN-SWA_5 2786699 : 2828536 46 Mycobacterium_phage(20.0%) transposase,integrase,capsid attL 2779309:2779326|attR 2794051:2794068
DBSCAN-SWA_6 2878026 : 2898204 24 Microbacterium_phage(37.5%) transposase,portal,capsid,protease,head NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage