CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035055	Lactobacillus fermentum strain SRCM 103290 chromosome, complete genome	2 crisprs	cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,DEDDh,DinG,cas2,WYL,csn2,cas9,cas14j,csa3	0	14	18	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP035055_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035055_1

118942-121044

TypeI-E

Consensus_repeat	Method
TGTGCTCCCCATGTATATGGGGGTGATCCC	PILER-CR
GTGCTCCCCATGTATATGGGGGTGATCC	CRISPRCasFinder
GTGCTCCCCATGTATATGGGGGTGATCC	CRT
GTGCTCCCCATGTATATGGGGGTGATCC	PILER-CR

34 spacers

DEDDh,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP035055_1

>merge|CP035055|1|118942-121044|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
TGTGCTCCCCATGTATATGGGGGTGATCCTAGTAATTTCAACCTCAACCCGACGTTTTCGTTGTGCTCCCCATGTATATGGGGGTGATCCCTCAACCTGAACAATATCTGATTGAAGGTAAGCGTGCTCCCCATGTATATGGGGGTGATCCCGATAACTAAATAAAAGGAGGAAGCAATTATGAGTGCTCCCCATGTATATGGGGGTGATCCCGATAACTAAATAAAAGGAGGAAGCAATTATGAGTGCTCCCCATGTATATGGGGGTGATCCTTGTTTCTTCAATTCTTGCACGGCCCCCATGAGGTGCTCCCCATGTATATGGGGGTGATCCTGAAATGGCATTTGGCTTGAAGTGGGGGAGGTGGTGCTCCCCATGTATATGGGGGTGATCCTATATAACCGCTTACATGTATAGCTAAAATAAAGTGCTCCCCATGTATATGGGGGTGATCCTTATCGTGACATTTATTCATGGCTTACCAACCAGTGCTCCCCATGTATATGGGGGTGATCCCAGTGCACGATCACGGTTGGCGACGATTCAACTGTGCTCCCCATGTATATGGGGGTGATCCCTTACGAACATCACGGATGACCCCCGTATTTCAGTGCTCCCCATGTATATGGGGGTGATCCCTTGCCCACAGCTTATATACTTCTTTCCAGTGAGTGCTCCCCATGTATATGGGGGTGATCCTGGCAAGACGCGCCAGACGATCGGGGTATCGAAGTGCTCCCCATGTATATGGGGGTGATCCTGTTGACCAAATTGACACGTGGGCAGACACTAGGTGCTCCCCATGTATATGGGGGTGATCCTAAATTCAAGCTTCCATTTGTGGATCCCGGATGGTGCTCCCCATGTATATGGGGGTGATCCCCGCCGTCGCAACTAACCCAATTCAATGGGAGAATGCTCCCCATGTATATGGGGGTGATCCCTACACAACCTTATCGACCAAGCCAATGAAGAAGTGCTCCCCATGTATATGGGGGTGATCCCGAAAATCAATCAAACGCTGCTGAACTGAAGGCGTGCTCCCCATGTATATGGGGGTGATCCTTCATTGCTCGCATGTATGGGTTGCCCGCGATCGTGCTCCCCATGTATATGGGGGTGATCCCAAACTGAAATGGTTCAATTCACGATTCACACTGTGCTCCCCATGTATATGGGGGTGATCCCCGTTCCGTCATTGAGAAAACGGGCAACGTAAGGTGCTCCCCATGTATATGGGGGTGATCCTAAGAAGCAGAAATACAGTCGTGCACTGCAACGGTGCTCCCCATGTATATGGGGGTGATCCTAAGAAGCAGAAATACAGTCGTGCACTGCAACGGTGCTCCCCATGTATATGGGGGTGATCCCTACTTAAAGGCGGCTAAAAAGCAAGTAGTTGAGTGCTCCCCATGTATATGGGGGTGATCCTCCACCGTCGATGGTGGTAGCTCACGGCCATTAGTGCTCCCCATGTATATGGGGGTGATCCTCTCATCGATCCAGTCAAATTGGCCGTCGATTAGTGCTCCCCATGTATATGGGGGTGATCCTATATGTACAAACAAAAAGGGGTGAGGACAATGGTGCTCCCCATGTATATGGGGGTGATCCCATCATCTTCCACCACAATGTAATCCATAGCATGTGCTCCCCATGTATATGGGGGTGATCCCCTAATCCCATTCAAAGTTCAAATTCCTGAAAAGTGCTCCCCATGTATATGGGGGTGATCCTACCTTAGGCCTTCTCAAGTCACACCTTTTCTTGTGCTCCCCATGTATATGGGGGTGATCCTCGGTGGTAGCTTGGCTCAAAACGCTGCCGACGGTGCTCCCCATGTATATGGGGGTGATCCTCAGCTTACAAACATCACGGATGATCCCCGCATGTGCTCCCCATGTATATGGGGGTGATCCCCGTTAACTCAATGATCAACAAAGAAATTAGGAGTGCTCCCCATGTATATGGGGGTGATCCTTCTACCAGGTAATCGAACCACTGGTCCCCAGTGTGCTCCCCATGTATATGGGGGTGATCCCGTTAACGAGATGTTTAAGACCGTCACGATTAGGTGCTCCCCATGTATATGGGGGTGATCC

>CP035055|1|1|118942-119093|PILER-CR
TGTGCTCCCCATGTATATGGGGGTGATCCT	AGTAATTTCAACCTCAACCCGACGTTTTCGT
TGTGCTCCCCATGTATATGGGGGTGATCCC	TCAACCTGAACAATATCTGATTGAAGGTAAG
CGTGCTCCCCATGTATATGGGGGTGATCCCGATAACTAAATAAAAGGAGGAAGCAATTATGAGTGCTCCCCATGTATATGGGGGTGATCCCGATAACTAAATAAAAGGAGGAAGCAATTATGAGTGCTCCCCATGTATATGGGGGTGATCCTTGTTTCTTCAATTCTTGCACGGCCCCCATGAGGTGCTCCCCATGTATATGGGGGTGATCC	TGAAATGGCATTTGGCTTGAAGTGGGGGAGGTG
GTGCTCCCCATGTATATGGGGGTGATCC	TATATAACCGCTTACATGTATAGCTAAAATAAA
GTGCTCCCCATGTATATGGGGGTGATCC	TTATCGTGACATTTATTCATGGCTTACCAACCA
GTGCTCCCCATGTATATGGGGGTGATCC	CAGTGCACGATCACGGTTGGCGACGATTCAACT
GTGCTCCCCATGTATATGGGGGTGATCC	CTTACGAACATCACGGATGACCCCCGTATTTCA
GTGCTCCCCATGTATATGGGGGTGATCC	CTTGCCCACAGCTTATATACTTCTTTCCAGTGA
GTGCTCCCCATGTATATGGGGGTGATCC	TGGCAAGACGCGCCAGACGATCGGGGTATCGAA
GTGCTCCCCATGTATATGGGGGTGATCC	TGTTGACCAAATTGACACGTGGGCAGACACTAG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAATTCAAGCTTCCATTTGTGGATCCCGGATG
GTGCTCCCCATGTATATGGGGGTGATCC	CCGCCGTCGCAACTAACCCAATTCAATGGGAGA
ATGCTCCCCATGTATATGGGGGTGATCC	CTACACAACCTTATCGACCAAGCCAATGAAGAA
GTGCTCCCCATGTATATGGGGGTGATCC	CGAAAATCAATCAAACGCTGCTGAACTGAAGGC
GTGCTCCCCATGTATATGGGGGTGATCC	TTCATTGCTCGCATGTATGGGTTGCCCGCGATC
GTGCTCCCCATGTATATGGGGGTGATCC	CAAACTGAAATGGTTCAATTCACGATTCACACT
GTGCTCCCCATGTATATGGGGGTGATCC	CCGTTCCGTCATTGAGAAAACGGGCAACGTAAG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAGAAGCAGAAATACAGTCGTGCACTGCAACG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAGAAGCAGAAATACAGTCGTGCACTGCAACG
GTGCTCCCCATGTATATGGGGGTGATCC	CTACTTAAAGGCGGCTAAAAAGCAAGTAGTTGA
GTGCTCCCCATGTATATGGGGGTGATCC	TCCACCGTCGATGGTGGTAGCTCACGGCCATTA
GTGCTCCCCATGTATATGGGGGTGATCC	TCTCATCGATCCAGTCAAATTGGCCGTCGATTA
GTGCTCCCCATGTATATGGGGGTGATCC	TATATGTACAAACAAAAAGGGGTGAGGACAATG
GTGCTCCCCATGTATATGGGGGTGATCC	CATCATCTTCCACCACAATGTAATCCATAGCAT
GTGCTCCCCATGTATATGGGGGTGATCC	CCTAATCCCATTCAAAGTTCAAATTCCTGAAAA
GTGCTCCCCATGTATATGGGGGTGATCC	TACCTTAGGCCTTCTCAAGTCACACCTTTTCTT
GTGCTCCCCATGTATATGGGGGTGATCC	TCGGTGGTAGCTTGGCTCAAAACGCTGCCGACG
GTGCTCCCCATGTATATGGGGGTGATCC	TCAGCTTACAAACATCACGGATGATCCCCGCAT
GTGCTCCCCATGTATATGGGGGTGATCC	CCGTTAACTCAATGATCAACAAAGAAATTAGGA
GTGCTCCCCATGTATATGGGGGTGATCC	TTCTACCAGGTAATCGAACCACTGGTCCCCAGT
GTGCTCCCCATGTATATGGGGGTGATCC	CGTTAACGAGATGTTTAAGACCGTCACGATTAG


>CP035055|1|1|118943-121044|CRISPRCasFinder
GTGCTCCCCATGTATATGGGGGTGATCC	TAGTAATTTCAACCTCAACCCGACGTTTTCGTT
GTGCTCCCCATGTATATGGGGGTGATCC	CTCAACCTGAACAATATCTGATTGAAGGTAAGC
GTGCTCCCCATGTATATGGGGGTGATCC	CGATAACTAAATAAAAGGAGGAAGCAATTATGA
GTGCTCCCCATGTATATGGGGGTGATCC	CGATAACTAAATAAAAGGAGGAAGCAATTATGA
GTGCTCCCCATGTATATGGGGGTGATCC	TTGTTTCTTCAATTCTTGCACGGCCCCCATGAG
GTGCTCCCCATGTATATGGGGGTGATCC	TGAAATGGCATTTGGCTTGAAGTGGGGGAGGTG
GTGCTCCCCATGTATATGGGGGTGATCC	TATATAACCGCTTACATGTATAGCTAAAATAAA
GTGCTCCCCATGTATATGGGGGTGATCC	TTATCGTGACATTTATTCATGGCTTACCAACCA
GTGCTCCCCATGTATATGGGGGTGATCC	CAGTGCACGATCACGGTTGGCGACGATTCAACT
GTGCTCCCCATGTATATGGGGGTGATCC	CTTACGAACATCACGGATGACCCCCGTATTTCA
GTGCTCCCCATGTATATGGGGGTGATCC	CTTGCCCACAGCTTATATACTTCTTTCCAGTGA
GTGCTCCCCATGTATATGGGGGTGATCC	TGGCAAGACGCGCCAGACGATCGGGGTATCGAA
GTGCTCCCCATGTATATGGGGGTGATCC	TGTTGACCAAATTGACACGTGGGCAGACACTAG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAATTCAAGCTTCCATTTGTGGATCCCGGATG
GTGCTCCCCATGTATATGGGGGTGATCC	CCGCCGTCGCAACTAACCCAATTCAATGGGAGA
ATGCTCCCCATGTATATGGGGGTGATCC	CTACACAACCTTATCGACCAAGCCAATGAAGAA
GTGCTCCCCATGTATATGGGGGTGATCC	CGAAAATCAATCAAACGCTGCTGAACTGAAGGC
GTGCTCCCCATGTATATGGGGGTGATCC	TTCATTGCTCGCATGTATGGGTTGCCCGCGATC
GTGCTCCCCATGTATATGGGGGTGATCC	CAAACTGAAATGGTTCAATTCACGATTCACACT
GTGCTCCCCATGTATATGGGGGTGATCC	CCGTTCCGTCATTGAGAAAACGGGCAACGTAAG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAGAAGCAGAAATACAGTCGTGCACTGCAACG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAGAAGCAGAAATACAGTCGTGCACTGCAACG
GTGCTCCCCATGTATATGGGGGTGATCC	CTACTTAAAGGCGGCTAAAAAGCAAGTAGTTGA
GTGCTCCCCATGTATATGGGGGTGATCC	TCCACCGTCGATGGTGGTAGCTCACGGCCATTA
GTGCTCCCCATGTATATGGGGGTGATCC	TCTCATCGATCCAGTCAAATTGGCCGTCGATTA
GTGCTCCCCATGTATATGGGGGTGATCC	TATATGTACAAACAAAAAGGGGTGAGGACAATG
GTGCTCCCCATGTATATGGGGGTGATCC	CATCATCTTCCACCACAATGTAATCCATAGCAT
GTGCTCCCCATGTATATGGGGGTGATCC	CCTAATCCCATTCAAAGTTCAAATTCCTGAAAA
GTGCTCCCCATGTATATGGGGGTGATCC	TACCTTAGGCCTTCTCAAGTCACACCTTTTCTT
GTGCTCCCCATGTATATGGGGGTGATCC	TCGGTGGTAGCTTGGCTCAAAACGCTGCCGACG
GTGCTCCCCATGTATATGGGGGTGATCC	TCAGCTTACAAACATCACGGATGATCCCCGCAT
GTGCTCCCCATGTATATGGGGGTGATCC	CCGTTAACTCAATGATCAACAAAGAAATTAGGA
GTGCTCCCCATGTATATGGGGGTGATCC	TTCTACCAGGTAATCGAACCACTGGTCCCCAGT
GTGCTCCCCATGTATATGGGGGTGATCC	CGTTAACGAGATGTTTAAGACCGTCACGATTAG
GTGCTCCCCATGTATATGGGGGTGATCC

>CP035055|1|1|118943-121044|CRT
GTGCTCCCCATGTATATGGGGGTGATCC	TAGTAATTTCAACCTCAACCCGACGTTTTCGTT
GTGCTCCCCATGTATATGGGGGTGATCC	CTCAACCTGAACAATATCTGATTGAAGGTAAGC
GTGCTCCCCATGTATATGGGGGTGATCC	CGATAACTAAATAAAAGGAGGAAGCAATTATGA
GTGCTCCCCATGTATATGGGGGTGATCC	CGATAACTAAATAAAAGGAGGAAGCAATTATGA
GTGCTCCCCATGTATATGGGGGTGATCC	TTGTTTCTTCAATTCTTGCACGGCCCCCATGAG
GTGCTCCCCATGTATATGGGGGTGATCC	TGAAATGGCATTTGGCTTGAAGTGGGGGAGGTG
GTGCTCCCCATGTATATGGGGGTGATCC	TATATAACCGCTTACATGTATAGCTAAAATAAA
GTGCTCCCCATGTATATGGGGGTGATCC	TTATCGTGACATTTATTCATGGCTTACCAACCA
GTGCTCCCCATGTATATGGGGGTGATCC	CAGTGCACGATCACGGTTGGCGACGATTCAACT
GTGCTCCCCATGTATATGGGGGTGATCC	CTTACGAACATCACGGATGACCCCCGTATTTCA
GTGCTCCCCATGTATATGGGGGTGATCC	CTTGCCCACAGCTTATATACTTCTTTCCAGTGA
GTGCTCCCCATGTATATGGGGGTGATCC	TGGCAAGACGCGCCAGACGATCGGGGTATCGAA
GTGCTCCCCATGTATATGGGGGTGATCC	TGTTGACCAAATTGACACGTGGGCAGACACTAG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAATTCAAGCTTCCATTTGTGGATCCCGGATG
GTGCTCCCCATGTATATGGGGGTGATCC	CCGCCGTCGCAACTAACCCAATTCAATGGGAGA
ATGCTCCCCATGTATATGGGGGTGATCC	CTACACAACCTTATCGACCAAGCCAATGAAGAA
GTGCTCCCCATGTATATGGGGGTGATCC	CGAAAATCAATCAAACGCTGCTGAACTGAAGGC
GTGCTCCCCATGTATATGGGGGTGATCC	TTCATTGCTCGCATGTATGGGTTGCCCGCGATC
GTGCTCCCCATGTATATGGGGGTGATCC	CAAACTGAAATGGTTCAATTCACGATTCACACT
GTGCTCCCCATGTATATGGGGGTGATCC	CCGTTCCGTCATTGAGAAAACGGGCAACGTAAG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAGAAGCAGAAATACAGTCGTGCACTGCAACG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAGAAGCAGAAATACAGTCGTGCACTGCAACG
GTGCTCCCCATGTATATGGGGGTGATCC	CTACTTAAAGGCGGCTAAAAAGCAAGTAGTTGA
GTGCTCCCCATGTATATGGGGGTGATCC	TCCACCGTCGATGGTGGTAGCTCACGGCCATTA
GTGCTCCCCATGTATATGGGGGTGATCC	TCTCATCGATCCAGTCAAATTGGCCGTCGATTA
GTGCTCCCCATGTATATGGGGGTGATCC	TATATGTACAAACAAAAAGGGGTGAGGACAATG
GTGCTCCCCATGTATATGGGGGTGATCC	CATCATCTTCCACCACAATGTAATCCATAGCAT
GTGCTCCCCATGTATATGGGGGTGATCC	CCTAATCCCATTCAAAGTTCAAATTCCTGAAAA
GTGCTCCCCATGTATATGGGGGTGATCC	TACCTTAGGCCTTCTCAAGTCACACCTTTTCTT
GTGCTCCCCATGTATATGGGGGTGATCC	TCGGTGGTAGCTTGGCTCAAAACGCTGCCGACG
GTGCTCCCCATGTATATGGGGGTGATCC	TCAGCTTACAAACATCACGGATGATCCCCGCAT
GTGCTCCCCATGTATATGGGGGTGATCC	CCGTTAACTCAATGATCAACAAAGAAATTAGGA
GTGCTCCCCATGTATATGGGGGTGATCC	TTCTACCAGGTAATCGAACCACTGGTCCCCAGT
GTGCTCCCCATGTATATGGGGGTGATCC	CGTTAACGAGATGTTTAAGACCGTCACGATTAG
GTGCTCCCCATGTATATGGGGGTGATCC

>CP035055|1|2|119248-121044|PILER-CR
	AGTAATTTCAACCTCAACCCGACGTTTTCGT
TGTGCTCCCCATGTATATGGGGGTGATCCC	TCAACCTGAACAATATCTGATTGAAGGTAAG
CGTGCTCCCCATGTATATGGGGGTGATCCCGATAACTAAATAAAAGGAGGAAGCAATTATGAGTGCTCCCCATGTATATGGGGGTGATCCCGATAACTAAATAAAAGGAGGAAGCAATTATGAGTGCTCCCCATGTATATGGGGGTGATCCTTGTTTCTTCAATTCTTGCACGGCCCCCATGAGGTGCTCCCCATGTATATGGGGGTGATCC	TGAAATGGCATTTGGCTTGAAGTGGGGGAGGTG
GTGCTCCCCATGTATATGGGGGTGATCC	TATATAACCGCTTACATGTATAGCTAAAATAAA
GTGCTCCCCATGTATATGGGGGTGATCC	TTATCGTGACATTTATTCATGGCTTACCAACCA
GTGCTCCCCATGTATATGGGGGTGATCC	CAGTGCACGATCACGGTTGGCGACGATTCAACT
GTGCTCCCCATGTATATGGGGGTGATCC	CTTACGAACATCACGGATGACCCCCGTATTTCA
GTGCTCCCCATGTATATGGGGGTGATCC	CTTGCCCACAGCTTATATACTTCTTTCCAGTGA
GTGCTCCCCATGTATATGGGGGTGATCC	TGGCAAGACGCGCCAGACGATCGGGGTATCGAA
GTGCTCCCCATGTATATGGGGGTGATCC	TGTTGACCAAATTGACACGTGGGCAGACACTAG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAATTCAAGCTTCCATTTGTGGATCCCGGATG
GTGCTCCCCATGTATATGGGGGTGATCC	CCGCCGTCGCAACTAACCCAATTCAATGGGAGA
ATGCTCCCCATGTATATGGGGGTGATCC	CTACACAACCTTATCGACCAAGCCAATGAAGAA
GTGCTCCCCATGTATATGGGGGTGATCC	CGAAAATCAATCAAACGCTGCTGAACTGAAGGC
GTGCTCCCCATGTATATGGGGGTGATCC	TTCATTGCTCGCATGTATGGGTTGCCCGCGATC
GTGCTCCCCATGTATATGGGGGTGATCC	CAAACTGAAATGGTTCAATTCACGATTCACACT
GTGCTCCCCATGTATATGGGGGTGATCC	CCGTTCCGTCATTGAGAAAACGGGCAACGTAAG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAGAAGCAGAAATACAGTCGTGCACTGCAACG
GTGCTCCCCATGTATATGGGGGTGATCC	TAAGAAGCAGAAATACAGTCGTGCACTGCAACG
GTGCTCCCCATGTATATGGGGGTGATCC	CTACTTAAAGGCGGCTAAAAAGCAAGTAGTTGA
GTGCTCCCCATGTATATGGGGGTGATCC	TCCACCGTCGATGGTGGTAGCTCACGGCCATTA
GTGCTCCCCATGTATATGGGGGTGATCC	TCTCATCGATCCAGTCAAATTGGCCGTCGATTA
GTGCTCCCCATGTATATGGGGGTGATCC	TATATGTACAAACAAAAAGGGGTGAGGACAATG
GTGCTCCCCATGTATATGGGGGTGATCC	CATCATCTTCCACCACAATGTAATCCATAGCAT
GTGCTCCCCATGTATATGGGGGTGATCC	CCTAATCCCATTCAAAGTTCAAATTCCTGAAAA
GTGCTCCCCATGTATATGGGGGTGATCC	TACCTTAGGCCTTCTCAAGTCACACCTTTTCTT
GTGCTCCCCATGTATATGGGGGTGATCC	TCGGTGGTAGCTTGGCTCAAAACGCTGCCGACG
GTGCTCCCCATGTATATGGGGGTGATCC	TCAGCTTACAAACATCACGGATGATCCCCGCAT
GTGCTCCCCATGTATATGGGGGTGATCC	CCGTTAACTCAATGATCAACAAAGAAATTAGGA
GTGCTCCCCATGTATATGGGGGTGATCC	TTCTACCAGGTAATCGAACCACTGGTCCCCAGT
GTGCTCCCCATGTATATGGGGGTGATCC	CGTTAACGAGATGTTTAAGACCGTCACGATTAG
GTGCTCCCCATGTATATGGGGGTGATCC

Protein	Signature genes	Signature genes Name	Protein_function
CP035055.1\|QAR23118.1\|126652_127735_+\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
CP035055.1\|QAR23108.1\|114045_114630_+\|CRISPR-associated-protein-CasB	cse2gr11	mkCas0194_cse2gr11_CAS-I-E	gnl\|CDD\|378191
CP035055.1\|QAR23112.1\|118034_118913_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	DEDDh	cd06127_DEDDh_CAS-I	gnl\|CDD\|176648
CP035055.1\|QAR23107.1\|109639_112384_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP035055.1\|QAR23122.1\|138157_138343_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|239737
CP035055.1\|QAR23105.1\|107737_108097_+\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
CP035055.1\|QAR23113.1\|121167_122166_+\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
CP035055.1\|QAR23109.1\|114641_115739_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP035055.1\|QAR23111.1\|117092_118031_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP035055.1\|QAR23116.1\|124396_125362_+\|aspartate-carbamoyltransferase-catalytic-subunit	unknown	unknown	gnl\|CDD\|234849
CP035055.1\|QAR24774.1\|115719_116427_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09756_cas5_CAS-I-E	gnl\|CDD\|187886
CP035055.1\|QAR23110.1\|116439_117096_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	pfam08798_cas6e_CAS-I-E:CAS-IV	gnl\|CDD\|378050
CP035055.1\|QAR23121.1\|136146_136635_+\|hypothetical-protein	unknown	unknown	unknown
CP035055.1\|QAR23106.1\|108366_109506_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
CP035055.1\|QAR23115.1\|123273_124062_+\|putative-hydro-lyase	unknown	unknown	gnl\|CDD\|180100
CP035055.1\|QAR23120.1\|130926_131844_+\|dihydroorotate-dehydrogenase	unknown	unknown	gnl\|CDD\|235982
CP035055.1\|QAR23119.1\|127734_130914_+\|carbamoyl-phosphate-synthase-large-subunit	unknown	unknown	gnl\|CDD\|235393
CP035055.1\|QAR23114.1\|122196_123165_-\|IS30-family-transposase	unknown	unknown	gnl\|CDD\|225382
CP035055.1\|QAR24773.1\|112364_114029_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09729_cas8e_CAS-I-E	gnl\|CDD\|378189
CP035055.1\|QAR23117.1\|125361_126651_+\|dihydroorotase	unknown	unknown	gnl\|CDD\|236479

Protein	Function_ID	Function_description	E-value
CP035055.1\|QAR23118.1\|126652_127735_+\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
CP035055.1\|QAR23108.1\|114045_114630_+\|CRISPR-associated-protein-CasB	gnl\|CDD\|378191	pfam09485, CRISPR_Cse2, CRISPR-associated protein Cse2 (CRISPR_cse2). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family of proteins, represented by CT1973 from Chlorobaculum tepidum, is encoded by genes found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse2.	2.04083e-23
CP035055.1\|QAR23112.1\|118034_118913_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|176648	cd06127, DEDDh, DEDDh 3'-5' exonuclease domain family. DEDDh exonucleases, part of the DnaQ-like (or DEDD) exonuclease superfamily, catalyze the excision of nucleoside monophosphates at the DNA or RNA termini in the 3'-5' direction. These proteins contain four invariant acidic residues in three conserved sequence motifs termed ExoI, ExoII and ExoIII. DEDDh exonucleases are classified as such because of the presence of specific Hx(4)D conserved pattern at the ExoIII motif. The four conserved acidic residues are clustered around the active site and serve as ligands for the two metal ions required for catalysis. Most DEDDh exonucleases are the proofreading subunits (epsilon) or domains of bacterial DNA polymerase III, the main replicating enzyme in bacteria, which functions as the chromosomal replicase. Other members include other DNA and RNA exonucleases such as RNase T, Oligoribonuclease, and RNA exonuclease (REX), among others.	9.38355e-39
CP035055.1\|QAR23107.1\|109639_112384_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	4.17925e-85
CP035055.1\|QAR23122.1\|138157_138343_-\|hypothetical-protein	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	6.53172e-13
CP035055.1\|QAR23105.1\|107737_108097_+\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	9.14881e-68
CP035055.1\|QAR23113.1\|121167_122166_+\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.8481e-87
CP035055.1\|QAR23109.1\|114641_115739_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	9.92896e-143
CP035055.1\|QAR23111.1\|117092_118031_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	4.54838e-132
CP035055.1\|QAR23116.1\|124396_125362_+\|aspartate-carbamoyltransferase-catalytic-subunit	gnl\|CDD\|234849	PRK00856, pyrB, aspartate carbamoyltransferase catalytic subunit.	1.55378e-158
CP035055.1\|QAR24774.1\|115719_116427_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187886	cd09756, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.98917e-50
CP035055.1\|QAR23110.1\|116439_117096_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|378050	pfam08798, CRISPR_assoc, CRISPR associated protein. This domain forms an anti-parallel beta strand structure with flanking alpha helical regions.	1.95834e-76
CP035055.1\|QAR23106.1\|108366_109506_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.91064e-64
CP035055.1\|QAR23115.1\|123273_124062_+\|putative-hydro-lyase	gnl\|CDD\|180100	PRK05463, PRK05463, putative hydro-lyase.	2.56437e-165
CP035055.1\|QAR23120.1\|130926_131844_+\|dihydroorotate-dehydrogenase	gnl\|CDD\|235982	PRK07259, PRK07259, dihydroorotate dehydrogenase.	2.00285e-160
CP035055.1\|QAR23119.1\|127734_130914_+\|carbamoyl-phosphate-synthase-large-subunit	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
CP035055.1\|QAR23114.1\|122196_123165_-\|IS30-family-transposase	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	1.4502e-48
CP035055.1\|QAR24773.1\|112364_114029_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|378189	pfam09481, CRISPR_Cse1, CRISPR-associated protein Cse1 (CRISPR_cse1). Clusters of short DNA repeats with non-homologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This entry, represented by CT1972 from Chlorobaculum tepidum, is found in the CRISPR/Cas subtype Ecoli regions of many bacteria (most of which are mesophiles), and not in Archaea. It is designated Cse1.	3.97962e-81
CP035055.1\|QAR23117.1\|125361_126651_+\|dihydroorotase	gnl\|CDD\|236479	PRK09357, pyrC, dihydroorotase; Validated.	0

>CP035055.1|QAR23112.1|118034_118913_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MIVIALSRVPASLRGDLTKWCQEIQTGIYVGRFSARIRDLLWERIQKNIGNGEATIVYTTNNELGYAFRSTREDREVVNYDGIPLLMHLEKPPSDIKHGFSDAAKFHHAKQARKGKETGMTRTVVALDIETTGLNSATDEIISIGAVKSTKGRGLERFYRIVRTSKQIPPKIVKLTGLNQRKVNQEGISLEAALTDFKDFIGHATVVGYNVVFDWEFIERGYDKIGQDRLGNRIIDLLKVVRQKEVFLDNFRFETVLKYYQIENHDQHNSLADAEASIKLMTKLIEKGFLKI
>CP035055.1|QAR23111.1|117092_118031_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MKSGMGAEKPKLTELSRTSDRISFLYLEHAKINRQDSAIKVMDARGIVFVPVALISVLLLGPGVDVTHRAMELMGDSGLAVVWVGEYGVRQYAHGRALNHSSRLLEKQAKLVSNVRSRVAVARKMYQMRFPNEDVTKLTMQQLRGKEGSRVRKVYRKLSNETGVAWNGREYNVDNFDEGTPINKALTAANQTLYGLSYSVVAALGASPGLGFIHTGHDLAFIYDFADIYKANYSIPISFEMTAKYGDEDIATRTRQAMRDAFRDGKLLKQMVHDLKFLFEVEDDQDLEFMSLWDDKEGMQKFGVQYHEIGEE
>CP035055.1|QAR23110.1|116439_117096_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRVEVDTKNRQKISDLTHLGAYHSWVEDSFPREVVKGERKRHLWRLDQVQGKEYLLVLSDDQPNMNRLEKYGVPGSAQSKIYDQFLSQIQTGKVMRFRLTANPVHRVTEPGEKVGRVYPHVTIAQQEKWLIDRAERNGFTLLTTADGYQFDVVGRDRPQLLHKGQRRVKLNRVSYEGLLKVSDADLFKKLLVNGIGKEKAYGMGLMTVIPVNEKA
>CP035055.1|QAR24774.1|115719_116427_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKTLTVNLTGPLQSYGNEATFERRTTYHYPSKSAVIGMIAAGLGYRRDDQRIESLNKLGIAVRIDQRGKIMTDFHIVRPQNAKNSKLTYRDYLQDAVFVVAIGSEDDNLIGQIKYALRYPKFQLFLGRRANVPAGVLRIEEFDTDPMTVLKELPWQASDWFKKRMKKELYSAEVVADWGLEKGADRNLIQVKDQVGSFNVQHRYHKYRPAIRTFVTLKNNMYQENSGEHDVWSSI
>CP035055.1|QAR23109.1|114641_115739_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MKNLYLDINVLQTVPSSNINRDDTGTPKTAIYGGVTRSRVSSQSWKRVMRQAFMTDSEGAEWLNSHRTKHAAKLLAGRIKNLSDGLSDEEALEKALEAFNTTKVKPKKDKKTGEYLTGALLQLSNGQLDKLAHYVLSHDELDTKEIKETLMEKSSLDLALFGRMVADDPELNVDAASQVAHAISTHAIVPEYDFYTAIDDDKEDSQAGSAMMGTLAYNSSTLYRYANVNINELMHNLGSTELTIEGVKLFVKEFMLTMPTGKENTFANKTLPQYVMITLREDTPVNLVSAFEEPVKSNHGYVEESIERLEKEYSDTLKLVEQPIYTGVLTTKQSNLNQVANTEELLDQVAKFVSEKVVDDENVNG
>CP035055.1|QAR23108.1|114045_114630_+|CRISPR-associated-protein-CasB
MSHIRKTVAKIIHQLYNDGDLDKGTLAKLRTANSLLSRDATAIWPLLFENIEDKQDLSQTGEPSFAENAIFAALRAYAIYQQGTEESVFKHSDDWRENHSLFQAFGRLRSDPDFTDSLDKRVSNVLTSLNFQSAENSITQLVRILKSKGQGGQIDFAQLGEDLYRFQFSSESARQVTLKWGQDYYWNNLKDNQE
>CP035055.1|QAR24773.1|112364_114029_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MKNRHFNLITEPWIKVLDENYQELTVSMGEVLKNARHYRQLAGEMRSQDLVILRLLLAVLLSVYQRVNADGEPYEGLTIDDAWQVEVDSDLDFEDLIEEMQETWQTLYEGGEFSRAVFDYLKAYEDRFDFFGEHAFYQVSREFYDAHVPVKNQVAKGTGTVAIKQINRNISESGNSIAVFTPRTNTFKNQLSIDELVRWVLTYQNYTGVTDKTKVNRADKFSVSSGWLYNLYPVYAQGTNLFETLLLNLTLFEDEQDKYSQPKPVWEWATKRYLKGRIDETVPDNLPELYTLWSRMLHIEWEEGTPTIFTAGLPKVSNVNVFLEPMTTWRQDKEGYKPRVKRLDNLGTAMWRNFGDYVGTDDEENRVPGIVWWLNFLTEEGLLTQEANIDLASAVMISDGKGSSQMPAAESVDDFTIRADVLFDPDPLAARRWPRRIEEVIELTKKVGGTLYYFAKEVAELRDSNGSGSFANRISAEFYDQLNEPFLGWLASLRNDQDRDEKILEWKKALHSLVMQTARKLVQESSPTEMRGKDSTNIFTLYNATQLKIRKQLS
>CP035055.1|QAR23107.1|109639_112384_+|CRISPR-associated-helicase/endonuclease-Cas3
MKELSKQVKALWGKKSNVDGQELWQPLVVHLLDTKNVINWLYGHWLTDGQRKAVQGDLSEEAGQQLAEFLGAVHDLGKATPVFQIKKSYNGDQDLDDQLMERLIQVGFDHLGDLILASPRESPHALAGEALLEQFGIDKTVGAIIGGHHGKPQSKVPRAEIDDHTKNYWQVDNLVKAREGNWLKVQRELFNFCLQECGYQSVADVPANLTQPQAILLEGLLIMADWLVSTEYLGDDRSKPLFPLIPLHNSMEDLDLGARFQRAILTWRVEDQWFPEQITDIDEQFQKRWGFKPRPVQRQMDQVIQDATDPGIIIIELEPGAGKTEIALEAVEQLAYTNGEQGLFFGLPTQATSNAMFARVTDWLDKVAKDDDAKLGIKLMHSKAEFNPTYADLKIPQAHNVEEEGSVTVNSWFSGKKSILEEFSIGTIDHLLLMGLKQKHLFLRHLGMSGKVVVIDEVHAYDAYMDSYLTKALEWLGAYHVPVIALSATLPIATRSALIEAYCKGKYGKKKVEGAPSWDKNQAYPLISVLDGKRLVQKSDFMRNTEKRVVEVERLSVEEEGLIKAVLEAVEDGGVAGVIVNTVKRAQMIASQIPKGIPKLILHSAFLAPDRAEIETKLQGLIGKKYGKRPKKMIIIGTQVLEQSLDIDFDIMFTDIAPMDLLIQRIGRLHRHDIQRPSKLVTPQVKIMGINDYGDYGSANEAIYSKYLLMKTDQYLPEQLTIPDDISPLVQATYRDDGEMEPDLREAKRVFDVKHKEEQDKAEKFQIKSPKQRKSIHGWLDSELVDANKDEVRAQAAVRDIQETLEVLMVKQVKGDYYLLDGQQLEEVDSKTIAKQLIRIPAAVTPRIDKSIELLETQTAKNFPDWQADPWLKGALVVVLDEQNSVELGNWQIHYSRKFGLSYEKADDDEKQAF
>CP035055.1|QAR23106.1|108366_109506_-|IS30-family-transposase
MTHLNDITTDTNVSTRSKGSHLTIDDRVKISVLKELEYSNRMIAQYIGVAHGTIDREINRGMVTKMSKQSNNGKVYCYYKEYYDPYTAQERYEKSRSNCGRTPIYQSSPEIINLLDDLMLGEFDFKDYDKFESLDSQKCSPYAALKIAESLVNDDVKLPASERSIYNWIDKGLLRTKNIDLLEKTRRTKAKHGRTPKREQPGKNISQRPKEVETRTTFGHWEMDTVQGKKSAEDPVILVLAERLTRYNLAFKITSKTPNAVSRVITKLKELTGDYFDEIFKTITPDNGSEFFEVANEVDQVYYADAYSPWQRGTNENNNRLLRRSITKGTSLQLFSELDVEQANLRLNSYPRKILGGKSSLDRFEEEILKIINPETLAV
>CP035055.1|QAR23105.1|107737_108097_+|50S-ribosomal-protein-L19
MRQNQLIEKVTAGQLRSDIPAFRAGDTVRVHALIVEGTRERVQIFEGVVIKRHGAGISATYTVRKISNGIGVERTFPLHSPRVEKIEVVRYGRVRRAKLYYLRERTGKSARIAERRRDK
>CP035055.1|QAR23113.1|121167_122166_+|IS30-family-transposase
MSSYNHLTLKDRECILLGVTLKDTYQVIAQRIGCSKATVSREIKRNGGRKAYSAVKAQENYQGRRLKSRRSRLLTNLKLRDFILHCIVQRQWSPEQISGRLAHENSEWRISYNTIYRGIERDNLGIKRKSHGARGFARKLRHRGKTRKVKETIKERRGRFNDVPSVHERPVSCENRSRFGHWEGDTIRGKTGRSALVTLVDRKSRYLLSQRVLKVNAKHVTQAMIDLLHTVTPKRVRTLTPDRGTEFAGYREVSQELSIPVYFPDPHAPQQRGTNENTNGLIREYFPKGTDLDQLTDQDIDKFVRDLNHRPRKVLGWKSPFEVFFGTKLRLI
>CP035055.1|QAR23114.1|122196_123165_-|IS30-family-transposase
MTYSHLTTAELTTITNFFTQGTKAYKVAQMLKRSVETIYRVYRYLKTGATIVDYQQQYVSNKKRCGRKLAQLPQDEVAYINEMVAQGWTPDTIIGRGDRSISCNRRTLYRMFKRGQFGFDAKDLPMHGNRHLNGYVEHRGKAGQLGRSIYERYEDFPNYTKEFGHLEGDTVQGKHHQGAVMTLVEHLSKVEIVLNVHAKKAENINRHLSEWLSKFPRHFFKSITFDNGKEFAGWREIANQFDIHTYFTEVGAPNQRGLNENNNGLLRRDGLTKDRDLRNLPDELVNQLMSKRNRIPRKSLDYRTPYEVFMEHITEDQRQLFF
>CP035055.1|QAR23115.1|123273_124062_+|putative-hydro-lyase
MTNLTNLSPAEFRHLVRTGNFTSSTSGYCPGYTQANLVIVPQRYVYDFLLLAQRNPRPCPVLEVSDAGSRGLTNFATDVDLANDFPKYRVYRGGELSEEVTSVERLWQNDFVSFLIGCSFSFEAELLAAGIEVRHITEEVNVPMYNTNLPLQGAGAGNMVVSMRPIPASQVAKAVEVTAALPRVHGAPIYVGDPASLGIKDLSHPDYGDPVTIKDGELPVFWPCGVTPQNAIMQSKLPLVITHAPGHMLITDVLNADLKGNG
>CP035055.1|QAR23116.1|124396_125362_+|aspartate-carbamoyltransferase-catalytic-subunit
MTTQLVEQLVSLPHFVSVEDLTTDQVNALIARAEEFKNGAPVPELSRPVYVTNMFFENSTRTHTSFAMAEKKLGLTEIPFDASHSSIKKGETLYDTCLTLDALGVDLTVIRASENDYYLPLINPGEGHYLDLGIVNGGDGSGQHPSQCMLDIMTIHEHFGHFKGLKVAIVGDITHSRVARSNMEILNKLGAEVYFSGPEYWYDHAFDKYGKFLPIDELVEEVDVMMLLRVQHERHAGDAHEGDFSAADYHKQYGINEERYALLKPDTIIMHPGPINRGVELADSLVEAPKSAFVAQMENGVFMRMAMLEAVLRGRKLGGLE
>CP035055.1|QAR23117.1|125361_126651_+|dihydroorotase
MKTLIKNGTVYNDGRLVKEDVLVEDGIIRAIGKDLHEYLDDDYDELDAGNLLVSPGLVDVHVHYREPGQTEKETIKTGSAAAAHGGFTTVGAMPNVDPVPDTPAKVAQMVAKNKRDGLVHIAQYSAITTDRTSDEVVDMAGVKRAGAFAVSNDGNGVQAAGTMYRAMQAAKAVGLPLAAHVEDESLLFGGVMTEGERSRYLGLPGAPEVVESAQVARDLALAKATGVHYHVCHVSTKDSLAMIHFAKQNGVRVTCEATPHHLLLSDQCIDGHDSNYKMNPPLRHEADRRALVAALNDGTVDMIATDHAPHTEEDKGRDFCCAANGITGSETAFALLYTKLVKTGLLKLERLLDLMATNPAEVFNLTEAGHLEVGKPADIAVFDLNHPYVIDQRDYLSKGINSPFTGMTVYGQTVMTMVDGQVVYQRKEN
>CP035055.1|QAR23118.1|126652_127735_+|carbamoyl-phosphate-synthase-small-subunit
MQRYLVLEDGTTYRGTAFGADQAKTGEVVFTTGMTGYQEAITDQSFANQILVFTNPLIGNYGVNLDDDESLLPEIKGVVCRKLARVATNWRMQDDLANFLTQRGIPGLEGIDTRALVKKLCQHGTLRGRLVDDLTDLDQVVAALKQATPMKNIIPLVSTKSPYPNPGTKRNIVVVDFGIKHSILRELAKRDCNVIVLPHTATATQVLNLHADGVFLSNGPGDPLEMTAAAEMVKEVEQHLPVFGICMGHQILALANGAKTVKMKFGHRGFNHPVKNVATGEVNFTSQNHGYAVDAASIDPDRLLITHVEINDGTVEGLRHKHYPAFSVQFHPDAAPGPHDAEQLFDDFINLVDQRKKGRN
>CP035055.1|QAR23119.1|127734_130914_+|carbamoyl-phosphate-synthase-large-subunit
MPKRTDIHKIMVIGSGPIIIGQAAEFDYSGTQACLALKEEGYETVLVNSNPATIMTDKEIADHVYIEPLTVAALTRILRQEAPDALLPTLGGQIGLNLAVALSKTGILDELGIELLGTKLASIDQAEDREKFKELMQELGEPVPASLTVSTVEQALAFAKTVGYPVIVRPAFTMGGTGGGLANNEAELAEIAKNGLELSPATQCLIEKSIAGYKEIEFEVMRDAADNTMVVCCMENFDPVGIHTGDSIVFAPSQTLADREYQRLRDCALKLISALKIEGGCNVQLALDPNSYDYNVIEVNPRVSRSSALASKATGYPIAKLAAKIAVGLTLDEIKNPVTKTTYAEFEPALDYVVVKIPRWPFDKFTKADRRLGSQMKATGEVMAIGRTAEEALLKAVASLEIDQKDLFSKEAAAASDRQLEDKLVHAQDDRLFYIAEAFRRGYSLADLHELTRINHYFLDIVAGLVEEERRIKAAGLDKEVIYEAKRDGFADTTLATLLNQTPAAIRAFRKANGIVPVYKMVDTCAAEFDSATPYFYSTYETENESRRSAKPSVLVIGSGPIRIGQGVEFDYATVHCVRALQKLGYEAIVINSNPETVSTDFSVSDKLYFEPLTLENVLNVTDLEQPVGAIVQFGGQTAINLAAGLEENGVKILGTTVADLDAAEDRELFDQVIKDLNLRQPIGMTATTRQGVLDAAKEIGYPVLVRPSYVLGGKAMEIVYGQAELEDYLNQNADVTGSHPILVDAYLEGAECEVDAICDGERVLLPGIMEHIEHAGVHSGDSMAVYPPQSFSGAVKVQIEEATKKLAVALKCVGIMNIQFIIHDGQAYVLEVNPRASRTVPFLSKVTGIEMAQLATKVILGHNLAKQGYRSGLAPESQMIHVKAPVFSFSKLGDVDSYLGPEMKSTGEVMGSDTTYEKALYKAFAGAGMEVPDNGAVLLTIEDNDKAQILPLAKRFLAIGYRILATSGTAAFLRENGLRPTVVAKLHEQGQPAILDVIKDKRADLVINTMGHDDEKNSDGFIIRQTAIEHHVPLLTTLDTVDALLRSLEMTSFKTTEL
>CP035055.1|QAR23120.1|130926_131844_+|dihydroorotate-dehydrogenase
MTNRLAVSLPGLNMTNPLMPASGTFGFGDAWGADQVNFNDLGALVIKTTTPEARTGNPQPQIAKLTDGVMNAVGLTNPGVDAVIKDKLPNLAKQYPDLPVVGSIGGSTETDYVLVAEKLAKSGLVSALELNVSCPNVAHGGMAFGTDAKVLESLTNQVKRVVGEVPLYVKLTPNVTDITEVARGAEAGGADGLSLINTVLGLHIDIRTGQPVLGNGMGGYSGTAVKPLAVRMVYQVAHATKLPIIGMGGIETAADVLEFMMAGASAVAVGAAHFKDIAACPHIAAQLPALMDELGIKTLAEVKRV
>CP035055.1|QAR23121.1|136146_136635_+|hypothetical-protein
MDYQKSQSSHNFGVGTGNTIKKRHDFYLSGNSFNITSSEKIGVVQKFSDSFLEQVASICFGDKGFFSASTVPDVNADILRLRNFVSTTLAIPNSLVSKANNIIDLLNDAYVFVSTEKPKLTQMNDENSEKYSDEFNNFQVKLTELEENYLNSLRDYIYGKES
>CP035055.1|QAR23122.1|138157_138343_-|hypothetical-protein
MGATIEQRLVFQEALNFVREEDTFMVEAIDRLGRNYDEVIQTVNYLKQKNVKRGQNKEGSW

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Crispr_ID: CP035055_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035055_2

575359-575988

TypeII

Consensus_repeat	Method
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	CRT
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	PILER-CR
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	CRISPRCasFinder
AAAGTACTCGGAACTACTGATCTGACACTCATCCAAGAC	PILER-CR

9 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of CP035055_2

>merge|CP035055|2|575359-575988|CRT,PILER-CR,CRISPRCasFinder,PILER-CR
TTTTGGACTTGACCTGATCTGACACTCATCCAAGACCCGAAGTTTTCATAGTTTGAAACTTGATCAGTACTCAGAACTACTGATCTGACACTCATCCAAGACATAAGCTAACCAACTCTTTAATAGGTTCACGTACTCGGAACTACTGATCTGACACTCATCCAAGACAGCATAAACAACAATTAATTCTGGCGCAATGTACTCGGAACTACTGATCTGACACTCATCCAAGACTGATCTTGACTTCACTGCTATTACATCTGAGTACTCGGAACTACTGATCTGACACTCATCCAAGACTATGTTCATCCGGTATAGTGACCAGGAACGGTACTCGGAACTACTGATCTGACACTCATCCAAGACTGATCTTGACTTCACTGCTATTACATCTGAGTACTCGGAACTACTGATCTGACACTCATCCAAGACTTAATCTTGATCTAGCTGACTTCAAAGAAAGTACTCGGAACTACTGATCTGACACTCATCCAAGACGGTGTGAGTTCAATCATGTTGCTCCTCCTTGTACTCGGAACTACTGATCTGACACTCATCCAAGACAGGCACGGCTTGATAAAGTGAACCCTTAAAGTACTCGGAACTACTGATCTGACACTCATCCAAGAC

>CP035055|2|2|575359-575988|CRT
TTTTGGACTTGACCTGATCTGACACTCATCCAAGAC	CCGAAGTTTTCATAGTTTGAAACTTGATCA
GTACTCAGAACTACTGATCTGACACTCATCCAAGAC	ATAAGCTAACCAACTCTTTAATAGGTTCAC
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	AGCATAAACAACAATTAATTCTGGCGCAAT
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	TGATCTTGACTTCACTGCTATTACATCTGA
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	TATGTTCATCCGGTATAGTGACCAGGAACG
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	TGATCTTGACTTCACTGCTATTACATCTGA
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	TTAATCTTGATCTAGCTGACTTCAAAGAAA
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	GGTGTGAGTTCAATCATGTTGCTCCTCCTT
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	AGGCACGGCTTGATAAAGTGAACCCTTAAA
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC

>CP035055|2|3|575425-575658|PILER-CR
GTACTCAGAACTACTGATCTGACACTCATCCAAGAC	ATAAGCTAACCAACTCTTTAATAGGTTCAC
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	AGCATAAACAACAATTAATTCTGGCGCAAT
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	TGATCTTGACTTCACTGCTATTACATCTGA
GTACTCGGAACTACTGATCTGACACTCATCCAAGACTATGTTCATCCGGTATAGTGACCAGGAACGGTACTCGGAACTACTGATCTGACACTCATCCAAGACTGATCTTGACTTCACTGCTATTACATCTGAGTACTCGGAACTACTGATCTGACACTCATCCAAGACTTAATCTTGATCTAGCTGACTTCAAAGAAAGTACTCGGAACTACTGATCTGACACTCATCCAAGAC	GGTGTGAGTTCAATCATGTTGCTCCTC
CTTGTACTCGGAACTACTGATCTGACACTCATCCAAGAC	AGGCACGGCTTGATAAAGTGAACCCTT


>CP035055|2|2|575425-575988|CRISPRCasFinder
GTACTCAGAACTACTGATCTGACACTCATCCAAGAC	ATAAGCTAACCAACTCTTTAATAGGTTCAC
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	AGCATAAACAACAATTAATTCTGGCGCAAT
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	TGATCTTGACTTCACTGCTATTACATCTGA
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	TATGTTCATCCGGTATAGTGACCAGGAACG
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	TGATCTTGACTTCACTGCTATTACATCTGA
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	TTAATCTTGATCTAGCTGACTTCAAAGAAA
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	GGTGTGAGTTCAATCATGTTGCTCCTCCTT
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	AGGCACGGCTTGATAAAGTGAACCCTTAAA
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC

>CP035055|2|4|575818-575988|PILER-CR
	ATAAGCTAACCAACTCTTTAATAGGTTCAC
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	AGCATAAACAACAATTAATTCTGGCGCAAT
GTACTCGGAACTACTGATCTGACACTCATCCAAGAC	TGATCTTGACTTCACTGCTATTACATCTGA
GTACTCGGAACTACTGATCTGACACTCATCCAAGACTATGTTCATCCGGTATAGTGACCAGGAACGGTACTCGGAACTACTGATCTGACACTCATCCAAGACTGATCTTGACTTCACTGCTATTACATCTGAGTACTCGGAACTACTGATCTGACACTCATCCAAGACTTAATCTTGATCTAGCTGACTTCAAAGAAAGTACTCGGAACTACTGATCTGACACTCATCCAAGAC	GGTGTGAGTTCAATCATGTTGCTCCTC
CTTGTACTCGGAACTACTGATCTGACACTCATCCAAGAC	AGGCACGGCTTGATAAAGTGAACCCTT
AAAGTACTCGGAACTACTGATCTGACACTCATCCAAGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP035055.1\|QAR23477.1\|576684_576990_-\|CRISPR-associated-endonuclease-Cas2	cas2	mkCas0206_cas2_CAS-I:CAS-II:CAS-III	gnl\|CDD\|226043
CP035055.1\|QAR23482.1\|585574_586372_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|180561
CP035055.1\|QAR23484.1\|587088_587901_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	unknown	unknown	gnl\|CDD\|238574
CP035055.1\|QAR23481.1\|584787_585573_+\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
CP035055.1\|QAR23470.1\|564681_566916_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|223394
CP035055.1\|QAR23471.1\|566931_567273_-\|hypothetical-protein	unknown	unknown	unknown
CP035055.1\|QAR23480.1\|582471_584439_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274774
CP035055.1\|QAR23469.1\|564234_564672_-\|D-tyrosyl-tRNA(Tyr)-deacylase	unknown	unknown	gnl\|CDD\|235383
CP035055.1\|QAR23476.1\|576016_576688_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd12218_csn2_CAS-II-A	gnl\|CDD\|213411
CP035055.1\|QAR23473.1\|569098_569425_-\|hypothetical-protein	unknown	unknown	unknown
CP035055.1\|QAR24793.1\|571041_571980_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227829
CP035055.1\|QAR23479.1\|578078_582215_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
CP035055.1\|QAR23483.1\|586385_587027_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
CP035055.1\|QAR23474.1\|569901_570855_+\|L-lactate-dehydrogenase	unknown	unknown	gnl\|CDD\|178836
CP035055.1\|QAR23478.1\|576967_577873_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP035055.1\|QAR23472.1\|568080_569043_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|234786
CP035055.1\|QAR23467.1\|561896_563093_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	unknown	unknown	gnl\|CDD\|366438
CP035055.1\|QAR23475.1\|572210_573917_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274709
CP035055.1\|QAR23485.1\|587915_588359_-\|phosphate-starvation-inducible-protein-PsiE	unknown	unknown	gnl\|CDD\|235075
CP035055.1\|QAR23468.1\|563440_563929_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670

Protein	Function_ID	Function_description	E-value
CP035055.1\|QAR23484.1\|587088_587901_-\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|238574	cd01169, HMPP_kinase, 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate kinase (HMPP-kinase) catalyzes two consecutive phosphorylation steps in the thiamine phosphate biosynthesis pathway, leading to the synthesis of vitamin B1. The first step is the phosphorylation of the hydroxyl group of HMP to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine phosphate (HMP-P) and then the phophorylation of HMP-P to form 4-amino-5-hydroxymethyl-2-methyl-pyrimidine pyrophosphate (HMP-PP), which is the substrate for the thiamine synthase coupling reaction.	1.23967e-90
CP035055.1\|QAR23481.1\|584787_585573_+\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	3.44164e-95
CP035055.1\|QAR23470.1\|564681_566916_-\|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase	gnl\|CDD\|223394	COG0317, SpoT, Guanosine polyphosphate pyrophosphohydrolases/synthetases [Signal transduction mechanisms / Transcription].	0
CP035055.1\|QAR23472.1\|568080_569043_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|234786	PRK00517, prmA, 50S ribosomal protein L11 methyltransferase.	7.50038e-101
CP035055.1\|QAR23480.1\|582471_584439_-\|hypothetical-protein	gnl\|CDD\|274774	TIGR03766, hypothetical_protein_lp_2141, conserved hypothetical integral membrane protein. Models TIGR03110, TIGR03111, and TIGR03112 describe a three-gene system found in several Gram-positive bacteria, where TIGR03110 (XrtG) is distantly related to a putative transpeptidase, exosortase (TIGR02602). This model describes a small clade that correlates by both gene clustering and phyletic pattern, although imperfectly, to the three gene system. Both this narrow clade, and the larger set of full-length homologous integral membrane proteins, have an especially well-conserved region near the C-terminus with an invariant tyrosine. The function is unknown.	4.76734e-18
CP035055.1\|QAR23469.1\|564234_564672_-\|D-tyrosyl-tRNA(Tyr)-deacylase	gnl\|CDD\|235383	PRK05273, PRK05273, D-tyrosyl-tRNA(Tyr) deacylase; Provisional.	3.27289e-97
CP035055.1\|QAR23476.1\|576016_576688_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213411	cd12218, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	1.38394e-88
CP035055.1\|QAR24793.1\|571041_571980_-\|hypothetical-protein	gnl\|CDD\|227829	COG5542, COG5542, Predicted integral membrane protein [Function unknown].	1.24561e-10
CP035055.1\|QAR23479.1\|578078_582215_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	1.59806e-125
CP035055.1\|QAR23483.1\|586385_587027_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	1.92369e-70
CP035055.1\|QAR23477.1\|576684_576990_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	8.95492e-28
CP035055.1\|QAR23478.1\|576967_577873_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	7.44529e-83
CP035055.1\|QAR23482.1\|585574_586372_+\|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase	gnl\|CDD\|180561	PRK06427, PRK06427, bifunctional hydroxy-methylpyrimidine kinase/ hydroxy-phosphomethylpyrimidine kinase; Reviewed.	1.09611e-121
CP035055.1\|QAR23467.1\|561896_563093_-\|aminotransferase-class-V-fold-PLP-dependent-enzyme	gnl\|CDD\|366438	pfam01053, Cys_Met_Meta_PP, Cys/Met metabolism PLP-dependent enzyme. This family includes enzymes involved in cysteine and methionine metabolism. The following are members: Cystathionine gamma-lyase, Cystathionine gamma-synthase, Cystathionine beta-lyase, Methionine gamma-lyase, OAH/OAS sulfhydrylase, O-succinylhomoserine sulfhydrylase All of these members participate is slightly different reactions. All these enzymes use PLP (pyridoxal-5'-phosphate) as a cofactor.	2.89012e-171
CP035055.1\|QAR23475.1\|572210_573917_-\|hypothetical-protein	gnl\|CDD\|274709	TIGR03663, TIGR03663, TIGR03663 family protein. Members of this protein family, uncommon and rather sporadically distributed, are found almost always in the same genomes as members of family TIGR03662, and frequently as a nearby gene. Members show some N-terminal sequence similarity with pfam02366, dolichyl-phosphate-mannose-protein mannosyltransferase. The few invariant residues in this family, found toward the N-terminus, include a dipeptide DE, a tripeptide HGP, and two different Arg residues. Up to three members may be found in a genome. The function is unknown.	8.81839e-05
CP035055.1\|QAR23474.1\|569901_570855_+\|L-lactate-dehydrogenase	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	2.26288e-179
CP035055.1\|QAR23485.1\|587915_588359_-\|phosphate-starvation-inducible-protein-PsiE	gnl\|CDD\|235075	PRK02833, PRK02833, phosphate-starvation-inducible protein PsiE; Provisional.	4.98724e-38
CP035055.1\|QAR23468.1\|563440_563929_-\|transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	3.37224e-05

>CP035055.1|QAR23475.1|572210_573917_-|hypothetical-protein
MGVKFVAAATGPAAREAGPKKGLLSMLVVTLTLAVLYVIFLVVIARRPAFYQRPRWFKVTLALLLLVAIIARLYRYNAAMGIDYDEAMGGLNAWSLAKWGIDYFTLASHPVYLYAWGSGMNLLYPLIASPLVKFFGLSITVYRFPMVLLGVLSLFCLTVAMLKGRWKDWRLVLVLAALALSPGMINTSRWAVESNLFPALLTMVMATLLWWVTTKRARYFYLTNLLLVLGAYTYANNWLFLATFILGFWLIAWRRHLVGVRQLGLGFLIDFALAWPLALFLWVNYVSHRQLYVLRLTITRLAASRGASQLVVGHGQGLGAVIKNLGQTVAVLFTGYDGYLKNGLPGFGILTPVMVVLAIVGALLVFKAKPRTDFDALMLMMLGANLPTVLLISPNHTHLNALTVPALYFAGMALAKLSRVNWRVAGLVVIVVLFGTYAYTYLGPAHTALAAGQNETPLELQTMLTKADDNGAPIYLATNHQQAGGMYTVALFNHPVKPANFKQEAVKSGGGEFIHYYRYGRYHISAQLPKSLPTHAVLIVRRGASLQSAKQAGYHLVKAGCYYQYLER
>CP035055.1|QAR24793.1|571041_571980_-|hypothetical-protein
MIALFTYLPLRNLYLYKALSVTFDIVFAVYSAKLIHRVKPKLNFLVPYTLILALPTVILNSSAWGQADSIYTAWLMVALWYLMNHQNNRALIFFGVALAFKLQAILLLPFFFYVYWARRDYRHWYQFGWIPVTVYAMNLPGFLAGRSLLTPLTIYAGQTSDYKELALNIANFPKFLQLAFPAAALDHYELLKQGLMVLTCLILLAGFWYLRRLDLTPQRFLVVATWSFWTCTMFLPSMHDRYSYFVMVMLALVALLDCRMIVVALVSIGISTVLYLRYLLNADAAIDLLPLAIIQIINYCGFTVGTFLHSFR
>CP035055.1|QAR23474.1|569901_570855_+|L-lactate-dehydrogenase
MSKTHQKVVLIGDGAVGSSYAFAMVQQGLAQEFAIIDLNKKRTEGDALDLEDATPFTAPKLVYGADYDTCKDADLVVITAGAPQKPGETRLDLVDKNLKIIRSVVEPVVKSGFQGIFLVAANPVDILTYAVQKFSGFPRNKVVGSGTSLDSARLRVGLSKLFNVSPVDVNANMMAEHGDTEFAAFSSATIGGLPLYDLAEAKGVSKEELYKLEDDVRNKAYAIINSKGATFYGVATALMRISRAILRDENAVLPVGAPMSGEYGLKDIYIGTPAVINANGIAEVLEVPLDEREAKAMADSAKALEEIAKDGMAKIQG
>CP035055.1|QAR23473.1|569098_569425_-|hypothetical-protein
MITMLNRTKQFMREHDLTYKKEYIRPMMTPEHVYVFRFGKHRLNNRVIIRYSHTWTGRVKINEIDVRMHHQHHPRIFKTEDDMLAYLAHHLEKREAKEATRVHTGEEE
>CP035055.1|QAR23472.1|568080_569043_-|50S-ribosomal-protein-L11-methyltransferase
MNWTAIVVETSTEAVDAVSYILTDTGATGVKIDDAADYQKLKPGKYGPYGEIVDPSTLPHREEGAAVTGYYPPTTFVPEKIADIRQRVAKLADFGLNPAPARVAAEEIDNQDWATAWQKYYHPVRVTRELTIVPQWEEYTPATADEKLLVLDPGMAFGTGTHPTTQLMLQALTIALRGGESMIDVGTGSGVLSIAAKQLGAGEVWAYDIDDVAVKSAEKNLALNPVAKDVHTGVNSLLDGIHTQVDLVVANILAEIILPLVPQAFENLKPGGKFLTSGIINTRFETVKKAIETQGFVVDETMRIKDWYGIIAHKPAPEEA
>CP035055.1|QAR23471.1|566931_567273_-|hypothetical-protein
MKSLKSLWQRADRRLWVLSILIGFVVTWLVNIVPFINKVERFAVFYLLLYGAFAIWTGFTLQNRRRCWQAFVFPVSFLLAAHLFGPKYSLYFAPAYLAVAYLAWSMVRANRNK
>CP035055.1|QAR23470.1|564681_566916_-|bifunctional-(p)ppGpp-synthetase/guanosine-3',5'-bis(diphosphate)-3'-pyrophosphohydrolase
MSQTKELTHEDVKNMVAKYMNEEHVALVERAYHFAAVAHQGQVRKSGEPYIIHPIQVAGILAELKMDPETVCAGYMHDLVEDTGATLDDIKELFGPTIAMIVDGDTKISKIHYKSNKEQMAETHRKLLLAMSKDIRVMIVKLADRLHNMRTLKHLRPDKQRRISNETLEIYAPIADRLGISTIKWELEDLSLRYLNPQQYYRIVHLMNSRRDQRIDYISAAIKVVKTAIADLDLGPNVEIYGRPKHIYSVYRKMVTQHKRFSQIYDLLAIRVVVDSIKDCYAVLGAIHTSWTPMPGRFKDYIAMPKANGYQSLHTTVIGPEGRPLEIQIRTHQMHEVAEYGVAAHWAYKEGKTNGGDQASQDSKKLNVVKEILELRSESNGTDEFMQGIQSDVFADKVYAFTPKGDAIEMPKGAGPLDMAYQIHTEIGNHTTGSKVNGRIVPLNYEIKNGDIVDILTSSSSAGPSRDWMDLVSTRRARNKIRQFFRTHDREENVIEGRRIMEQQLRDAGYEPAELMVSDKEEEIAGKLHYKTADDMYAALGFGDIAPIGLRNRFTEDIRKHKEEEKQNAAQKAILEGHKTLEQEPPTRQKVAKSSEGVVVEGVDNLLTRLSHCCSPVPGDAIVGYITKGRGVSVHRADCPNIKAAEKSGQRVVSVYWANPAGDKTNYNADIEVEGYNRNGLLNDIIRAINNNTRYLTSINGRVDHNKMATISATVGVRNFQHLQLIMDSLKNLPDVYVVKRVIH
>CP035055.1|QAR23469.1|564234_564672_-|D-tyrosyl-tRNA(Tyr)-deacylase
MRVVLQRVKEASVTIEGQVVGQIGQGYLLLVGFGPDDTEETLDYMVHKITNLRVFESEPGKMNLGLKDVDGAILSVSQFTLYADVKHGNRPGFSNAAKPSLAEPLYQRFNEKLAATGIPVATGQFGADMQVALVNDGPVTIWYEK
>CP035055.1|QAR23468.1|563440_563929_-|transcriptional-regulator
MTDYQTIRKLIHRLREADAKWQVTAQREMAERYREVLPEPVWQRLRSNRFNHTELELLDLVAAAGKRGIAYQEVQAEVLYSQSLVSRYTNRLAELGLLVKEHPEYDQKAYQLTVTPAGERMAVLHAELHRQESKFFDQRLTRWSPEEVATTIAVLKSLTREK
>CP035055.1|QAR23467.1|561896_563093_-|aminotransferase-class-V-fold-PLP-dependent-enzyme
MTKLDTQLVHGPAVNDNCTGAVTTPIYKATTYEYPEIGASVTYDYSRSGNPTRQAVENQLAALEGGQRAFSFASGMAAIHAALAILKAGDHLIVGDQIYGGTFRLLYQFFARWGLQITAVDTRDPQAIEAAIRDNTKAIYFEPVTNPLLQVTSVRQVAAIAKQHGLLTIVDNTFLSPYLLKPLELGADLVIHSATKYLAGHSELSAGAVIVDDPRLADRVYFVQNALGGILSPEGANELARGIKTLGIRLDRQIENLVEVVKFLETRPEVQRVYYPGLPGHEGYEELRQEAKGAGAVLSFELSGAVDPVAFVNGLRLFTRAVSLGAVESLVELPSKMSHAELTAEEQLAAGIKQGLIRLAIGIEDVTDLIEDLAQALDQAELVTIKGSVEDDQTTAIN
>CP035055.1|QAR23476.1|576016_576688_-|type-II-A-CRISPR-associated-protein-Csn2
MRLQYHGHQLIELTPGKVVILQIENPSVNTELIQGLQGHNDCLRMIDDGYQELNLSKVMKWEGDLVLNPTKLDSYQTALDKMIVKNLSIEKRDRMNNLAREVYSEMQDSLFEFDLPLEVRYDESLLRLYKYAKIKYLTQVIRQPYGIIETDLKLHLELKDCQVLGYCNVANYLLPEQIQEFATLVEKTELAVLLVEFSEKRETLQQPKQDIYRIDRDFVDWHE
>CP035055.1|QAR23477.1|576684_576990_-|CRISPR-associated-endonuclease-Cas2
MRLMVMFDLPTDTSQQRKQYRQFRKKLLNEGFIMIQYSVYVRVCTTRSAAEFLERRLKNYLPDQGIIQSLMLTEKQYSDMHFLLGDEIEEVRNSSKRTIVL
>CP035055.1|QAR23478.1|576967_577873_-|type-II-CRISPR-associated-endonuclease-Cas1
MGWRSIIIGQHAKITHSAHMMVVQTKDGINEIPMDDIAKVLVETTQAMISSDFMSACLQRNIKVIFVDRKYQPIGETVGYQPVARDYELLERQFLWPLERREQLWTRIAHAKIESQIKVARLNGCPVQELESELEAIEVNDVSNREAVVARKYFPLLFGKDFSRRQENQYNAALDYGYAVLLAETNQSITENGYLMELGIHHQNRENRFNLGSDLMEPFRPVIDYWVTGQKFAEFNRQVRVGLVDAMHTVIKYNGTEMLTQNAVRQYVRECLDYLSGERDEIEVKVEFKDEVPNHALDGHV
>CP035055.1|QAR23479.1|578078_582215_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MNYVKEYHIGLDIGTSSIGWAVTDSQFKLMRIKGKTAIGVRLFEEGKTAAERRTFRTTRRRLKRRKWRLHYLDEIFAPHLQEVDENFLRRLKQSNIHPEDPTKNQAFIGKLLFPDLLKKNERGYPTLIKMRDELPVEQRAHYPVTNIYKLREAMINEDRQFDLREVYLAVHHIVKYRGHFLNNASVDKFKVGRIDFDKSFNVLNEAYEELQNGEGSFTIEPSKVEKIGQLLLDTKMRKLDRQKAVAKLLEVKVADKEETKRNKQIATAMSKLVLGYKADFATVAMANGNEWKIDLSSETSEDEIEKFREELSDAQNDILTEITSLFSQIMLNEIVPNGMSISESMMDRYWTHERQLAEVKEYLATQPASARKEFDQVYNKYIGQAPKERGFDLEKGLKKILSKKENWKEIDELLKAGDFLPKQRTSANGVIPHQMHQQELDRIIEKQAKYYPWLATENPATGERDRHQAKYELDQLVSFRIPYYVGPLVTPEVQKATSGAKFAWAKRKEDGEITPWNLWDKIDRAESAEAFIKRMTVKDTYLLNEDVLPANSLLYQKYNVLNELNNVRVNGRRLSVGIKQDIYTELFKKKKTVKASDVASLVMAKTRGVNKPSVEGLSDPKKFNSNLATYLDLKSIVGDKVDDNRYQTDLENIIEWRSVFEDGEIFADKLTEVEWLTDEQRSALVKKRYKGWGRLSKKLLTGIVDENGQRIIDLMWNTDQNFKEIVDQPVFKEQIDQLNQKAITNDGMTLRERVESVLDDAYTSPQNKKAIWQVVRVVEDIVKAVGNAPKSISIEFARNEGNKGEITRSRRTQLQKLFEDQAHELVKDTSLTEELEKAPDLSDRYYFYFTQGGKDMYTGDPINFDEISTKYDIDHILPQSFVKDNSLDNRVLTSRKENNKKSDQVPAKLYAAKMKPYWNQLLKQGLITQRKFENLTKDVDQNIKYRSLGFVKRQLVETHQVIKLTANILGSMYQEAGTEIIETRAGLTKQLREEFDLPKVREVNDYHHAVDAYLTTFAGQYLNRRYPKLRSFFVYGEYMKFKHGSDLKLRNFNFFHELMEGDKSQGKVVDQQTGELITTRDEVADYFDWVQDLKLMLVTKELKRSNGKLFDATIQNANYTKLNERKKVFVPLKKELDKTLYGSYSGIQSSYMTIVKKFDKKGSTYAVQRIPVMYSKLLELEKEQSKLNWLVQSIVTSDPQAPNNFEVLMPCVLSGQLVIDNGRKFTLTSYRYQCSTAQLFLPKKDLKYIQNNFKELKKTPDKQDKIFETIYDDILKQVDKYFSLYDINKFRSKLHDGKDNFLALENFGEKESKDKVITKILRGLHANAERTSLKEIGLSTPLGQFQSGEGGITLSDNTKIIYQSPTGLFERHVYLKDL
>CP035055.1|QAR23480.1|582471_584439_-|hypothetical-protein
MGPVTGARRVSRGLAWILVACLVGGLVSNFTFSQNWVTSLILVPLTLLGWWGLPKLAPVIDRLTNRQVALLVGFGMAVMVLFQMAVLKWLPVTVYHDPLRVLDQATRMAVGHTSWKITYFWRYPQNVPIAYLLSRWLKLTMALGMGVNRGVHLLSMLLLDGMVLLGIDTAWRVSKKKHLVLGILAFGVLTPFAYTYYLQVFYTDLPVMFVLLYLLRTLVLWRHRNWWQKGLSGALLVLLAMLGQLTKANMIVIIPAMLLTALILWGRHRFKQSQLLVPMLLITLGVALSFPLSSTLDKAAHFTRQTDYEFPLTQWVTMGLNEKSNGVYNTKDAVANVKLKTKAARNAHNLKVIKQRLAKQNVGLIKLWLAKLMVLTNAGNIFHWYNGGMQEAPRSYLKAASVFTGLVAISYQLATCLLFGFVIKRLLATRMTLKSANGQVALLVILTALGYLAFHVLLWEVEERYGEVLVPLSWLLVTLLPAADDQPITPKQVGSVFALGTVAVLVGAMTNLGVNSSGQTVTVAAQRSQLSTQYGAKPVDLAPGNQISQVVKINGAASDVSVQIHAKSHVTVTLVELKTGDEYVFKRYADEYDYQGNVPAGTYQFVIKNQTAVDQDVDIVHVPHYRMAPYPMDDQGTVHWDTSLIYWFRDVRSAN
>CP035055.1|QAR23481.1|584787_585573_+|hydroxyethylthiazole-kinase
MQNAIATIKETNPIVLTVANNVTPADVANGLNALGASPMMSQTPEEADDMVNIAQAAAINLGTLNPHQRGEMEAVMEAAKKYHKPTVLDPVACGATMYRLRVVTELLHQYHFTVIRGNAGEIATLAGVDWQSHGIDAGEGNADLEKVARLAAEKLGSVIVLSGEVDIVTDGTRLARLPYGSPAFKTHVGTGDMLSSLIGAFLATNDDAFDAAVDAVTTFTLCGQVVEDQRPGNWYPGLLNNLDAVTDQQLAAWQEAFGKEA
>CP035055.1|QAR23482.1|585574_586372_+|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MTNEFPQALTIAGSDSGGGAGMQADLKTIQMRHVFATTVVVAVTAQNTLGVQDALALPTEMIDAQFASLADDFKIRAAKTGMLADVPTVQAVVRNLKQYDFGPLTVDPVMIAKGGAKLLADEAITTVKDELLPLATLVTPNLPEAEALTGLKAERPADMVKIGQALQKLGPKNVLVKGGHLGGDQAASDFVLMEDGTSFWMTSPRIDTVRTHGTGDTISACITAELAKGVGLEQAIRTAKGYVEATIRDTIQVGHGHGPLNHWAL
>CP035055.1|QAR23483.1|586385_587027_+|thiamine-phosphate-synthase
MLFKDEMLRCYLIGGSQDTHHDPDEFLTKVEAAMQAGITAFQYREKGTSTLSKAETLALGQQVRELATKYGVPLFVDDDLELAAAIKADGIHVGQKDQRIEEVLAAVGDQLMVGYSCNTAPQVAHANQLNVDYIGTGPVFPTISKDDAGSALGVDGLADFVEQSAHPVVAIGGISMDNAGATLTSGCAGLSMISMVLGADDVAGTVKKILELY
>CP035055.1|QAR23484.1|587088_587901_-|bifunctional-hydroxymethylpyrimidine-kinase/phosphomethylpyrimidine-kinase
MTQYVQALTIAGHDSDGSAGMPADLHAFFIDGVYGQGLLTAAVSGNSYGITQQQIMPTSFIKEQFKVLADDFAIKAAKTGMLANDDVINAVADSYDEAKFGPLVVDPVIITKHGVMLLEQSAYELFRERIIPLATVITPNFYEAQKLTELELKDDDQVQEAAAKLHALGAKNVVIKGQHIEGQTTPVRDFVSLADGKIFWLEEEYVPTDRVNGTGDTFSAIIAAELAKGHSVEAGVRLAKKVVHEAIANEIEVGHQFGPINHWAGQGAAN
>CP035055.1|QAR23485.1|587915_588359_-|phosphate-starvation-inducible-protein-PsiE
MVIEVSSQEWFQKIAHLLELVALVAVGLLGLALIVQLGMELLAVVKLALAPVSDPGFYDFLNEVTSFFIIFEFIVMVIEALRNHGHISITMLMGLGLTALLRHLLAASNSNGIETMVEVGAIVLLTVGLAIYRRFIHDPDENFEKRI

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035055_2	2.9\|575923\|30\|CP035055\|CRT,CRISPRCasFinder	575923-575952	30	NZ_CP053341	Lactobacillus paraplantarum strain CK401 plasmid pCK401D, complete sequence	6420-6449	0	1.0
CP035055_2	2.9\|575923\|30\|CP035055\|CRT,CRISPRCasFinder	575923-575952	30	NZ_CP016492	Lactobacillus pentosus strain BGM48 plasmid pBGM48-1, complete sequence	3434-3463	0	1.0
CP035055_2	2.9\|575923\|30\|CP035055\|CRT,CRISPRCasFinder	575923-575952	30	NZ_AP018407	Lactobacillus plantarum strain SN35N plasmid pSN35N-2, complete sequence	16270-16299	0	1.0
CP035055_2	2.9\|575923\|30\|CP035055\|CRT,CRISPRCasFinder	575923-575952	30	NZ_AP018409	Lactobacillus plantarum strain SN35N plasmid pSN35N-4, complete sequence	39588-39617	0	1.0
CP035055_2	2.9\|575923\|30\|CP035055\|CRT,CRISPRCasFinder	575923-575952	30	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	10984-11013	0	1.0
CP035055_2	2.9\|575923\|30\|CP035055\|CRT,CRISPRCasFinder	575923-575952	30	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	31442-31471	0	1.0
CP035055_2	2.9\|575923\|30\|CP035055\|CRT,CRISPRCasFinder	575923-575952	30	NZ_CP013153	Lactobacillus plantarum strain MF1298 plasmid pMF1298-3, complete sequence	6087-6116	0	1.0
CP035055_2	2.9\|575923\|30\|CP035055\|CRT,CRISPRCasFinder	575923-575952	30	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	43496-43525	0	1.0
CP035055_2	2.9\|575923\|30\|CP035055\|CRT,CRISPRCasFinder	575923-575952	30	NZ_CP028237	Lactobacillus plantarum strain SRCM101511 plasmid unnamed2, complete sequence	40661-40690	0	1.0
CP035055_2	2.11\|575923\|27\|CP035055\|PILER-CR	575923-575949	27	NZ_CP053341	Lactobacillus paraplantarum strain CK401 plasmid pCK401D, complete sequence	6420-6446	0	1.0
CP035055_2	2.11\|575923\|27\|CP035055\|PILER-CR	575923-575949	27	NZ_CP016492	Lactobacillus pentosus strain BGM48 plasmid pBGM48-1, complete sequence	3434-3460	0	1.0
CP035055_2	2.11\|575923\|27\|CP035055\|PILER-CR	575923-575949	27	NZ_AP018407	Lactobacillus plantarum strain SN35N plasmid pSN35N-2, complete sequence	16270-16296	0	1.0
CP035055_2	2.11\|575923\|27\|CP035055\|PILER-CR	575923-575949	27	NZ_AP018409	Lactobacillus plantarum strain SN35N plasmid pSN35N-4, complete sequence	39588-39614	0	1.0
CP035055_2	2.11\|575923\|27\|CP035055\|PILER-CR	575923-575949	27	NZ_CP045037	Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence	10984-11010	0	1.0
CP035055_2	2.11\|575923\|27\|CP035055\|PILER-CR	575923-575949	27	NZ_CP018181	Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence	31442-31468	0	1.0
CP035055_2	2.11\|575923\|27\|CP035055\|PILER-CR	575923-575949	27	NZ_CP013153	Lactobacillus plantarum strain MF1298 plasmid pMF1298-3, complete sequence	6087-6113	0	1.0
CP035055_2	2.11\|575923\|27\|CP035055\|PILER-CR	575923-575949	27	NZ_CP018177	Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence	43499-43525	0	1.0
CP035055_2	2.11\|575923\|27\|CP035055\|PILER-CR	575923-575949	27	NZ_CP028237	Lactobacillus plantarum strain SRCM101511 plasmid unnamed2, complete sequence	40664-40690	0	1.0
CP035055_2	2.5\|575659\|30\|CP035055\|CRT,CRISPRCasFinder	575659-575688	30	MN830252	Lactobacillus phage JNU_P1, complete genome	46423-46452	2	0.933
CP035055_1	1.8\|119276\|33\|CP035055\|CRISPRCasFinder,CRT,PILER-CR	119276-119308	33	NC_014718	Paraburkholderia rhizoxinica HKI 454 plasmid pBRH01, complete sequence	800010-800042	6	0.818
CP035055_1	1.2\|119033\|31\|CP035055\|PILER-CR	119033-119063	31	NZ_CP025493	Legionella sainthelensi strain LA01-117 plasmid pLA01-117_113k, complete sequence	20627-20657	7	0.774
CP035055_1	1.5\|119093\|33\|CP035055\|CRISPRCasFinder,CRT	119093-119125	33	NC_047983	Lactobacillus phage Lb, complete genome	20686-20718	7	0.788
CP035055_1	1.5\|119093\|33\|CP035055\|CRISPRCasFinder,CRT	119093-119125	33	NZ_CP040501	Lactobacillus paragasseri JV-V03 plasmid unnamed1, complete sequence	25750-25782	7	0.788
CP035055_1	1.6\|119154\|33\|CP035055\|CRISPRCasFinder,CRT	119154-119186	33	NC_047983	Lactobacillus phage Lb, complete genome	20686-20718	7	0.788
CP035055_1	1.6\|119154\|33\|CP035055\|CRISPRCasFinder,CRT	119154-119186	33	NZ_CP040501	Lactobacillus paragasseri JV-V03 plasmid unnamed1, complete sequence	25750-25782	7	0.788
CP035055_1	1.34\|120862\|33\|CP035055\|CRISPRCasFinder,CRT,PILER-CR	120862-120894	33	MK288022	Bacillus phage pW4, complete genome	77317-77349	7	0.788
CP035055_2	2.2\|575461\|30\|CP035055\|CRT,PILER-CR,CRISPRCasFinder	575461-575490	30	NZ_CP015147	Acinetobacter pittii strain IEC338SC plasmid pIEC338SC2, complete sequence	4607-4636	7	0.767
CP035055_2	2.2\|575461\|30\|CP035055\|CRT,PILER-CR,CRISPRCasFinder	575461-575490	30	NZ_CP040262	Acinetobacter baumannii strain P7774 plasmid unnamed3, complete sequence	3170-3199	7	0.767
CP035055_2	2.3\|575527\|30\|CP035055\|CRT,PILER-CR,CRISPRCasFinder	575527-575556	30	LT960552	Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite	39143-39172	7	0.767
CP035055_2	2.3\|575527\|30\|CP035055\|CRT,PILER-CR,CRISPRCasFinder	575527-575556	30	LR596615	Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I	36014-36043	7	0.767
CP035055_2	2.3\|575527\|30\|CP035055\|CRT,PILER-CR,CRISPRCasFinder	575527-575556	30	NC_042116	Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite	36014-36043	7	0.767
CP035055_2	2.1\|575395\|30\|CP035055\|CRT	575395-575424	30	MN694189	Marine virus AFVG_250M578, complete genome	4268-4297	8	0.733
CP035055_2	2.1\|575395\|30\|CP035055\|CRT	575395-575424	30	NZ_CP023412	Clostridium perfringens strain LLY_N11 plasmid pLLY_N11_2, complete sequence	7037-7066	8	0.733
CP035055_2	2.5\|575659\|30\|CP035055\|CRT,CRISPRCasFinder	575659-575688	30	NC_014824	Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence	301559-301588	8	0.733
CP035055_1	1.36\|120984\|33\|CP035055\|CRISPRCasFinder,CRT,PILER-CR	120984-121016	33	NZ_AP022319	Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence	610778-610810	9	0.727
CP035055_1	1.8\|119276\|33\|CP035055\|CRISPRCasFinder,CRT,PILER-CR	119276-119308	33	AP014274	Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C43, * SEQUENCING IN PROGRESS *	6266-6298	10	0.697
CP035055_1	1.32\|120740\|33\|CP035055\|CRISPRCasFinder,CRT,PILER-CR	120740-120772	33	MK448707	Streptococcus phage Javan227, complete genome	24795-24827	10	0.697
CP035055_1	1.8\|119276\|33\|CP035055\|CRISPRCasFinder,CRT,PILER-CR	119276-119308	33	AP013397	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S25-C46	10740-10772	11	0.667
CP035055_1	1.30\|120618\|33\|CP035055\|CRISPRCasFinder,CRT,PILER-CR	120618-120650	33	MN617835	Enterobacter phage prasa_myo, complete genome	159827-159859	11	0.667
CP035055_1	1.30\|120618\|33\|CP035055\|CRISPRCasFinder,CRT,PILER-CR	120618-120650	33	MG999954	Enterobacter phage myPSH1140, complete genome	159827-159859	11	0.667

1. spacer 2.9|575923|30|CP035055|CRT,CRISPRCasFinder matches to NZ_CP053341 (Lactobacillus paraplantarum strain CK401 plasmid pCK401D, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaacccttaaa	CRISPR spacer
aggcacggcttgataaagtgaacccttaaa	Protospacer
******************************

2. spacer 2.9|575923|30|CP035055|CRT,CRISPRCasFinder matches to NZ_CP016492 (Lactobacillus pentosus strain BGM48 plasmid pBGM48-1, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaacccttaaa	CRISPR spacer
aggcacggcttgataaagtgaacccttaaa	Protospacer
******************************

3. spacer 2.9|575923|30|CP035055|CRT,CRISPRCasFinder matches to NZ_AP018407 (Lactobacillus plantarum strain SN35N plasmid pSN35N-2, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaacccttaaa	CRISPR spacer
aggcacggcttgataaagtgaacccttaaa	Protospacer
******************************

4. spacer 2.9|575923|30|CP035055|CRT,CRISPRCasFinder matches to NZ_AP018409 (Lactobacillus plantarum strain SN35N plasmid pSN35N-4, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaacccttaaa	CRISPR spacer
aggcacggcttgataaagtgaacccttaaa	Protospacer
******************************

5. spacer 2.9|575923|30|CP035055|CRT,CRISPRCasFinder matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaacccttaaa	CRISPR spacer
aggcacggcttgataaagtgaacccttaaa	Protospacer
******************************

6. spacer 2.9|575923|30|CP035055|CRT,CRISPRCasFinder matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaacccttaaa	CRISPR spacer
aggcacggcttgataaagtgaacccttaaa	Protospacer
******************************

7. spacer 2.9|575923|30|CP035055|CRT,CRISPRCasFinder matches to NZ_CP013153 (Lactobacillus plantarum strain MF1298 plasmid pMF1298-3, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaacccttaaa	CRISPR spacer
aggcacggcttgataaagtgaacccttaaa	Protospacer
******************************

8. spacer 2.9|575923|30|CP035055|CRT,CRISPRCasFinder matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaacccttaaa	CRISPR spacer
aggcacggcttgataaagtgaacccttaaa	Protospacer
******************************

9. spacer 2.9|575923|30|CP035055|CRT,CRISPRCasFinder matches to NZ_CP028237 (Lactobacillus plantarum strain SRCM101511 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaacccttaaa	CRISPR spacer
aggcacggcttgataaagtgaacccttaaa	Protospacer
******************************

10. spacer 2.11|575923|27|CP035055|PILER-CR matches to NZ_CP053341 (Lactobacillus paraplantarum strain CK401 plasmid pCK401D, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaaccctt	CRISPR spacer
aggcacggcttgataaagtgaaccctt	Protospacer
***************************

11. spacer 2.11|575923|27|CP035055|PILER-CR matches to NZ_CP016492 (Lactobacillus pentosus strain BGM48 plasmid pBGM48-1, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaaccctt	CRISPR spacer
aggcacggcttgataaagtgaaccctt	Protospacer
***************************

12. spacer 2.11|575923|27|CP035055|PILER-CR matches to NZ_AP018407 (Lactobacillus plantarum strain SN35N plasmid pSN35N-2, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaaccctt	CRISPR spacer
aggcacggcttgataaagtgaaccctt	Protospacer
***************************

13. spacer 2.11|575923|27|CP035055|PILER-CR matches to NZ_AP018409 (Lactobacillus plantarum strain SN35N plasmid pSN35N-4, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaaccctt	CRISPR spacer
aggcacggcttgataaagtgaaccctt	Protospacer
***************************

14. spacer 2.11|575923|27|CP035055|PILER-CR matches to NZ_CP045037 (Lactobacillus mali strain LM596 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaaccctt	CRISPR spacer
aggcacggcttgataaagtgaaccctt	Protospacer
***************************

15. spacer 2.11|575923|27|CP035055|PILER-CR matches to NZ_CP018181 (Lactobacillus nagelii strain TMW 1.1827 plasmid pL11827-1, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaaccctt	CRISPR spacer
aggcacggcttgataaagtgaaccctt	Protospacer
***************************

16. spacer 2.11|575923|27|CP035055|PILER-CR matches to NZ_CP013153 (Lactobacillus plantarum strain MF1298 plasmid pMF1298-3, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaaccctt	CRISPR spacer
aggcacggcttgataaagtgaaccctt	Protospacer
***************************

17. spacer 2.11|575923|27|CP035055|PILER-CR matches to NZ_CP018177 (Lactobacillus hordei strain TMW 1.1822 plasmid pL11822-1, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaaccctt	CRISPR spacer
aggcacggcttgataaagtgaaccctt	Protospacer
***************************

18. spacer 2.11|575923|27|CP035055|PILER-CR matches to NZ_CP028237 (Lactobacillus plantarum strain SRCM101511 plasmid unnamed2, complete sequence) position: , mismatch: 0, identity: 1.0

aggcacggcttgataaagtgaaccctt	CRISPR spacer
aggcacggcttgataaagtgaaccctt	Protospacer
***************************

19. spacer 2.5|575659|30|CP035055|CRT,CRISPRCasFinder matches to MN830252 (Lactobacillus phage JNU_P1, complete genome) position: , mismatch: 2, identity: 0.933

tatgttcatccggtatagtgaccaggaacg	CRISPR spacer
tatgttcatccggtacggtgaccaggaacg	Protospacer
***************..*************

20. spacer 1.8|119276|33|CP035055|CRISPRCasFinder,CRT,PILER-CR matches to NC_014718 (Paraburkholderia rhizoxinica HKI 454 plasmid pBRH01, complete sequence) position: , mismatch: 6, identity: 0.818

tgaaatggcatttggcttgaagtgggggaggtg	CRISPR spacer
tgaaatggcattgggcgtgaagtgggggaaagc	Protospacer
************ *** ************..

21. spacer 1.2|119033|31|CP035055|PILER-CR matches to NZ_CP025493 (Legionella sainthelensi strain LA01-117 plasmid pLA01-117_113k, complete sequence) position: , mismatch: 7, identity: 0.774

tcaacctgaacaatatctgattgaaggtaag	CRISPR spacer
tgctcctgaacaatatctgaatgaagcgatg	Protospacer
*   **************** *****  * *

22. spacer 1.5|119093|33|CP035055|CRISPRCasFinder,CRT matches to NC_047983 (Lactobacillus phage Lb, complete genome) position: , mismatch: 7, identity: 0.788

cgataactaaataaaaggaggaagcaattatga	CRISPR spacer
gtttagataaaaataaggaggaagcaattatga	Protospacer
   **. **** * *******************

23. spacer 1.5|119093|33|CP035055|CRISPRCasFinder,CRT matches to NZ_CP040501 (Lactobacillus paragasseri JV-V03 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

cgataactaaataaaaggaggaagcaattatga	CRISPR spacer
taaagattaaataaaaggaggaaacaatcatga	Protospacer
..* .*.****************.****.****

24. spacer 1.6|119154|33|CP035055|CRISPRCasFinder,CRT matches to NC_047983 (Lactobacillus phage Lb, complete genome) position: , mismatch: 7, identity: 0.788

cgataactaaataaaaggaggaagcaattatga	CRISPR spacer
gtttagataaaaataaggaggaagcaattatga	Protospacer
   **. **** * *******************

25. spacer 1.6|119154|33|CP035055|CRISPRCasFinder,CRT matches to NZ_CP040501 (Lactobacillus paragasseri JV-V03 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.788

cgataactaaataaaaggaggaagcaattatga	CRISPR spacer
taaagattaaataaaaggaggaaacaatcatga	Protospacer
..* .*.****************.****.****

26. spacer 1.34|120862|33|CP035055|CRISPRCasFinder,CRT,PILER-CR matches to MK288022 (Bacillus phage pW4, complete genome) position: , mismatch: 7, identity: 0.788

ccgttaactcaatgatcaacaaagaaattagga	CRISPR spacer
gcgttaactcaatgatgaaaaaagaaaatggag	Protospacer
 *************** ** ******* *.*..

27. spacer 2.2|575461|30|CP035055|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP015147 (Acinetobacter pittii strain IEC338SC plasmid pIEC338SC2, complete sequence) position: , mismatch: 7, identity: 0.767

ataagctaaccaactctttaataggttcac	CRISPR spacer
tcaatttaaccaactctgtaataagttcag	Protospacer
 .** .*********** *****.*****

28. spacer 2.2|575461|30|CP035055|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP040262 (Acinetobacter baumannii strain P7774 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.767

ataagctaaccaactctttaataggttcac	CRISPR spacer
tcaatttaaccaactctgtaataagttcag	Protospacer
 .** .*********** *****.*****

29. spacer 2.3|575527|30|CP035055|CRT,PILER-CR,CRISPRCasFinder matches to LT960552 (Yersinia phage fHe-Yen9-03 genome assembly, complete genome: monopartite) position: , mismatch: 7, identity: 0.767

agcataaacaacaattaattctggcgcaat	CRISPR spacer
tacacaaacaacatttaattctggcaaaaa	Protospacer
 .**.******** ***********. **

30. spacer 2.3|575527|30|CP035055|CRT,PILER-CR,CRISPRCasFinder matches to LR596615 (Yersinia phage fHe-Yen9-04 genome assembly, chromosome: I) position: , mismatch: 7, identity: 0.767

agcataaacaacaattaattctggcgcaat	CRISPR spacer
tacacaaacaacatttaattctggcaaaaa	Protospacer
 .**.******** ***********. **

31. spacer 2.3|575527|30|CP035055|CRT,PILER-CR,CRISPRCasFinder matches to NC_042116 (Yersinia phage fHe-Yen9-04 genome assembly, complete genome: monopartite) position: , mismatch: 7, identity: 0.767

agcataaacaacaattaattctggcgcaat	CRISPR spacer
tacacaaacaacatttaattctggcaaaaa	Protospacer
 .**.******** ***********. **

32. spacer 2.1|575395|30|CP035055|CRT matches to MN694189 (Marine virus AFVG_250M578, complete genome) position: , mismatch: 8, identity: 0.733

ccgaagttttcatagtttgaaacttgatca	CRISPR spacer
aaagagttttcatagtttgaactttgaact	Protospacer
  ..***************** .**** *

33. spacer 2.1|575395|30|CP035055|CRT matches to NZ_CP023412 (Clostridium perfringens strain LLY_N11 plasmid pLLY_N11_2, complete sequence) position: , mismatch: 8, identity: 0.733

ccgaagttttcatagtttgaaacttgatca	CRISPR spacer
gctgcattttcataatttgaaacttgagcc	Protospacer
 * . .********.************ *

34. spacer 2.5|575659|30|CP035055|CRT,CRISPRCasFinder matches to NC_014824 (Ruminococcus albus 7 = DSM 20455 plasmid pRUMAL01, complete sequence) position: , mismatch: 8, identity: 0.733

tatgttcatccggtatagtgaccaggaacg	CRISPR spacer
tctgttcatccggtttattgaccagatctc	Protospacer
* ************ ** *******.  .

35. spacer 1.36|120984|33|CP035055|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP022319 (Burkholderia sp. THE68 plasmid BTHE68_p1, complete sequence) position: , mismatch: 9, identity: 0.727

cgttaacgagatgtttaagaccgtcacgattag	CRISPR spacer
ggaggttgagatgatgaagaccgtcacgattgg	Protospacer
 *  . .****** * ***************.*

36. spacer 1.8|119276|33|CP035055|CRISPRCasFinder,CRT,PILER-CR matches to AP014274 (Uncultured Mediterranean phage uvMED isolate uvMED-GF-U-MedDCM-OCT-S30-C43, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 10, identity: 0.697

tgaaatggcatttggcttgaagtgggggaggtg	CRISPR spacer
ccttctggcattgagcttgaagtgggggagtga	Protospacer
.    ******* .****************  .

37. spacer 1.32|120740|33|CP035055|CRISPRCasFinder,CRT,PILER-CR matches to MK448707 (Streptococcus phage Javan227, complete genome) position: , mismatch: 10, identity: 0.697

tcggtggtagcttggctcaaaacgctgccgacg	CRISPR spacer
atggtgctagcttagctcaaaacgctaatgcta	Protospacer
 .**** ******.************. .* ..

38. spacer 1.8|119276|33|CP035055|CRISPRCasFinder,CRT,PILER-CR matches to AP013397 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S25-C46) position: , mismatch: 11, identity: 0.667

tgaaatggcatttggcttgaagtgggggaggtg	CRISPR spacer
ccttcaggcattgagcttgaagtgggggagtga	Protospacer
.     ****** .****************  .

39. spacer 1.30|120618|33|CP035055|CRISPRCasFinder,CRT,PILER-CR matches to MN617835 (Enterobacter phage prasa_myo, complete genome) position: , mismatch: 11, identity: 0.667

cctaatcccattcaaagttcaaattcctgaaaa	CRISPR spacer
ttctgctccattaacagttcaaattcctgaagg	Protospacer
... ...***** * ****************..

40. spacer 1.30|120618|33|CP035055|CRISPRCasFinder,CRT,PILER-CR matches to MG999954 (Enterobacter phage myPSH1140, complete genome) position: , mismatch: 11, identity: 0.667

cctaatcccattcaaagttcaaattcctgaaaa	CRISPR spacer
ttctgctccattaacagttcaaattcctgaagg	Protospacer
... ...***** * ****************..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

42 : 62548

Lactobacillus_phage(85.71%)

protease,head,transposase,tail,capsid,integrase,terminase,portal,holin

attL 15884:15902|attR 59401:59419

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR22998.1\|42_222_+	hypothetical protein	E9LUJ2	Lactobacillus_phage	3.3e-13	95.0
QAR22999.1\|244_742_+	hypothetical protein	E9LUJ2	Lactobacillus_phage	5.1e-64	99.2
QAR23000.1\|765_1224_+	hypothetical protein	NA	NA	NA	NA
QAR23001.1\|1231_2020_+	hypothetical protein	E9LUJ2	Lactobacillus_phage	9.9e-94	100.0
QAR24766.1\|2048_2876_+\|tail	phage tail family protein	E9LUJ3	Lactobacillus_phage	3.7e-152	95.3
QAR23002.1\|2887_4858_+	hypothetical protein	E9LUJ4	Lactobacillus_phage	0.0e+00	98.8
QAR23003.1\|4971_8409_+	hypothetical protein	E9LUJ5	Lactobacillus_phage	1.0e-81	48.6
QAR23004.1\|8584_8842_+	hypothetical protein	E9LUJ7	Lactobacillus_phage	4.7e-21	63.3
QAR23005.1\|8853_9990_+	SGNH/GDSL hydrolase family protein	E9LUJ8	Lactobacillus_phage	1.9e-21	23.6
QAR23006.1\|10001_11072_+	DUF2479 domain-containing protein	E9LUJ9	Lactobacillus_phage	8.0e-14	34.0
QAR24767.1\|11172_11874_+	hypothetical protein	E9LUK0	Lactobacillus_phage	5.8e-29	38.6
QAR23007.1\|11892_12228_+	hypothetical protein	E9LUK1	Lactobacillus_phage	6.5e-55	100.0
QAR23008.1\|12240_12708_+\|holin	phage holin	E9LUK2	Lactobacillus_phage	5.7e-65	90.4
QAR23009.1\|12710_13958_+	LysM peptidoglycan-binding domain-containing protein	E9LUK3	Lactobacillus_phage	1.0e-222	99.3
QAR23010.1\|14664_15126_+	GNAT family N-acetyltransferase	E9LUK4	Lactobacillus_phage	2.5e-81	99.3
15884:15902	attL	NA	NA	NA	NA
QAR23011.1\|15903_16992_-\|integrase	site-specific integrase	E9LUK6	Lactobacillus_phage	2.0e-201	98.9
QAR23012.1\|17089_17890_-	DUF1828 domain-containing protein	Q6SEA4	Lactobacillus_prophage	3.2e-68	48.7
QAR23013.1\|17891_18140_-	hypothetical protein	Q6SEA3	Lactobacillus_prophage	3.4e-16	42.3
QAR23014.1\|18275_19345_-\|transposase	IS3-like element IS1163 family transposase	A0A1P8CWQ3	Bacillus_phage	6.3e-35	33.2
QAR23015.1\|19530_20061_-	hypothetical protein	Q6SEG3	Lactobacillus_prophage	1.3e-17	62.3
QAR24768.1\|20235_21192_-	DUF4041 domain-containing protein	Q708S0	Streptococcus_phage	6.0e-45	49.7
QAR23016.1\|21616_22006_-	ImmA/IrrE family metallo-endopeptidase	A0A1B1IME3	Lactococcus_phage	1.2e-07	31.0
QAR24769.1\|22016_22334_-	XRE family transcriptional regulator	E9LUL4	Lactobacillus_phage	5.1e-09	39.4
QAR23017.1\|22536_22734_+	XRE family transcriptional regulator	A0A0A1ELJ1	Lactobacillus_phage	3.4e-19	73.8
QAR23018.1\|22782_23550_+	phage regulatory protein	E9LUL6	Lactobacillus_phage	5.8e-123	86.7
QAR23019.1\|23662_23932_-	hypothetical protein	E9LUL8	Lactobacillus_phage	8.4e-45	100.0
QAR23020.1\|23991_24318_+	hypothetical protein	E9LUL9	Lactobacillus_phage	4.2e-59	100.0
QAR23021.1\|24677_24887_+	hypothetical protein	E9LUM2	Lactobacillus_phage	3.1e-31	98.6
QAR23022.1\|24889_25882_+	recombinase RecT	E9LUM3	Lactobacillus_phage	6.1e-141	83.1
QAR23023.1\|25874_26723_+	hypothetical protein	E9LUM4	Lactobacillus_phage	1.9e-167	97.9
QAR23024.1\|26723_27158_+	single-stranded DNA-binding protein	E9LUM5	Lactobacillus_phage	2.3e-76	98.6
QAR23025.1\|27172_27922_+	hypothetical protein	E9LUM6	Lactobacillus_phage	1.0e-140	99.2
QAR23026.1\|27930_28749_+	ATP-binding protein	E9LUM7	Lactobacillus_phage	8.0e-155	99.6
QAR23027.1\|28752_28944_+	hypothetical protein	D2KRE6	Lactobacillus_phage	4.6e-21	92.0
QAR23028.1\|28909_29098_+	hypothetical protein	NA	NA	NA	NA
QAR23029.1\|29094_29394_-	hypothetical protein	A0A1W6JPU7	Staphylococcus_phage	5.9e-23	54.2
QAR24770.1\|29514_29715_+	XRE family transcriptional regulator	A0A0P0IJY1	Lactobacillus_phage	1.2e-08	48.5
QAR23030.1\|29707_30022_+	hypothetical protein	A0A0A7NTZ5	Lactobacillus_phage	5.7e-37	81.8
QAR23031.1\|30221_30488_+	hypothetical protein	NA	NA	NA	NA
QAR23032.1\|30565_31015_+	hypothetical protein	A0A0A1ERD2	Lactobacillus_phage	2.0e-46	63.9
QAR23033.1\|31083_31569_+	hypothetical protein	Q8SDG5	Lactococcus_phage	5.6e-07	30.1
QAR23034.1\|31757_31964_-	CsbD family protein	NA	NA	NA	NA
QAR23035.1\|32368_33190_+	HNH endonuclease	E9LUN5	Lactobacillus_phage	3.4e-153	98.9
QAR23036.1\|33325_33781_+\|terminase	terminase	E9LUH9	Lactobacillus_phage	4.0e-79	98.7
QAR23037.1\|33777_35487_+\|terminase	terminase large subunit	E9LUI0	Lactobacillus_phage	0.0e+00	99.3
QAR23038.1\|35666_36932_+\|portal	phage portal protein	E9LUI2	Lactobacillus_phage	3.0e-233	96.9
QAR23039.1\|36864_37503_+\|head,protease	HK97 family phage prohead protease	D2KRA8	Lactobacillus_phage	5.0e-88	97.0
QAR23040.1\|37520_38639_+\|capsid	phage major capsid protein	E9LUI4	Lactobacillus_phage	3.7e-203	99.2
QAR23041.1\|38786_39095_+\|head,tail	phage gp6-like head-tail connector protein	E9LUI5	Lactobacillus_phage	2.1e-52	100.0
QAR23042.1\|39081_39429_+\|head,tail	head-tail adaptor protein	E9LUI6	Lactobacillus_phage	7.0e-60	99.1
QAR23043.1\|39412_39796_+	HK97 gp10 family phage protein	E9LUI7	Lactobacillus_phage	1.7e-67	100.0
QAR23044.1\|39792_40206_+	hypothetical protein	E9LUI8	Lactobacillus_phage	8.0e-71	97.1
QAR23045.1\|40211_40820_+\|tail	phage tail protein	E9LUI9	Lactobacillus_phage	3.0e-106	97.0
QAR23046.1\|40883_41228_+	hypothetical protein	E9LUJ0	Lactobacillus_phage	1.2e-59	100.0
QAR23047.1\|41426_45719_+\|tail	phage tail tape measure protein	E9LUJ2	Lactobacillus_phage	0.0e+00	99.8
QAR24771.1\|45747_46575_+\|tail	phage tail family protein	E9LUJ3	Lactobacillus_phage	3.7e-152	95.3
QAR23048.1\|46586_48668_+	hypothetical protein	E9LUJ4	Lactobacillus_phage	0.0e+00	99.0
QAR23049.1\|48671_52109_+	hypothetical protein	E9LUJ5	Lactobacillus_phage	1.0e-81	48.6
QAR23050.1\|52284_52542_+	hypothetical protein	E9LUJ7	Lactobacillus_phage	4.7e-21	63.3
QAR23051.1\|52553_53690_+	SGNH/GDSL hydrolase family protein	E9LUJ8	Lactobacillus_phage	1.9e-21	23.6
QAR23052.1\|53701_54772_+	DUF2479 domain-containing protein	E9LUJ9	Lactobacillus_phage	8.0e-14	34.0
QAR24772.1\|54872_55574_+	hypothetical protein	E9LUK0	Lactobacillus_phage	5.8e-29	38.6
QAR23053.1\|55592_55928_+	hypothetical protein	E9LUK1	Lactobacillus_phage	6.5e-55	100.0
QAR23054.1\|55940_56408_+\|holin	phage holin	E9LUK2	Lactobacillus_phage	5.7e-65	90.4
QAR23055.1\|56410_57658_+	LysM peptidoglycan-binding domain-containing protein	E9LUK3	Lactobacillus_phage	1.0e-222	99.3
QAR23056.1\|58364_58826_+	GNAT family N-acetyltransferase	E9LUK4	Lactobacillus_phage	2.5e-81	99.3
QAR23057.1\|59793_60435_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
59401:59419	attR	NA	NA	NA	NA
QAR23058.1\|60598_60907_+	50S ribosomal protein L21	NA	NA	NA	NA
QAR23059.1\|60919_61243_+\|protease	ribosomal-processing cysteine protease Prp	NA	NA	NA	NA
QAR23060.1\|61266_61548_+	50S ribosomal protein L27	NA	NA	NA	NA
QAR23061.1\|61624_62548_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	1.3e-31	32.4

DBSCAN-SWA_2

76583 : 142194

Bacillus_phage(15.38%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR23076.1\|76583_77534_+\|tRNA	methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	1.5e-11	32.7
QAR23077.1\|77526_78873_+	16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB	NA	NA	NA	NA
QAR23078.1\|78891_79629_+	Stp1/IreP family PP2C-type Ser/Thr phosphatase	NA	NA	NA	NA
QAR23079.1\|79632_81555_+	Stk1 family PASTA domain-containing Ser/Thr kinase	G9BWE0	Planktothrix_phage	9.4e-21	29.6
QAR23080.1\|81574_82465_+	ribosome small subunit-dependent GTPase A	NA	NA	NA	NA
QAR23081.1\|82476_83130_+	ribulose-phosphate 3-epimerase	NA	NA	NA	NA
QAR23082.1\|83197_83857_+	thiamine diphosphokinase	NA	NA	NA	NA
QAR23083.1\|83977_84166_+	50S ribosomal protein L28	NA	NA	NA	NA
QAR23084.1\|84312_84675_+	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
QAR23085.1\|84702_86397_+	DAK2 domain-containing protein	NA	NA	NA	NA
QAR23086.1\|86461_88498_+	ATP-dependent DNA helicase RecG	NA	NA	NA	NA
QAR23087.1\|88510_89548_+	phosphate acyltransferase PlsX	NA	NA	NA	NA
QAR23088.1\|89590_89836_+	acyl carrier protein	NA	NA	NA	NA
QAR23089.1\|89982_90681_+	ribonuclease III	L7RCJ8	Acanthamoeba_polyphaga_moumouvirus	3.4e-21	32.3
QAR23090.1\|90694_94258_+	chromosome segregation protein SMC	NA	NA	NA	NA
QAR23091.1\|94273_95875_+	signal recognition particle-docking protein FtsY	NA	NA	NA	NA
QAR23092.1\|95891_96233_+	putative DNA-binding protein	NA	NA	NA	NA
QAR23093.1\|96419_97850_+	signal recognition particle protein	NA	NA	NA	NA
QAR23094.1\|98962_99667_-	winged helix family transcriptional regulator	W8CYM9	Bacillus_phage	9.6e-16	28.6
QAR23095.1\|99959_100835_+	phosphate ABC transporter substrate-binding protein	H6WG65	Cyanophage	3.4e-10	31.2
QAR23096.1\|100834_101734_+	phosphate ABC transporter permease subunit PstC	NA	NA	NA	NA
QAR23097.1\|101735_102617_+	phosphate ABC transporter permease PstA	NA	NA	NA	NA
QAR23098.1\|102629_103388_+	phosphate ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.1e-16	29.0
QAR23099.1\|103402_104107_+	phosphate signaling complex protein PhoU	NA	NA	NA	NA
QAR23100.1\|104236_104512_+	30S ribosomal protein S16	NA	NA	NA	NA
QAR23101.1\|104526_104787_+	KH domain-containing protein	NA	NA	NA	NA
QAR23102.1\|104911_105421_+	ribosome maturation factor RimM	NA	NA	NA	NA
QAR23103.1\|105420_106179_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA
QAR23104.1\|106189_107617_+	amino acid permease	NA	NA	NA	NA
QAR23105.1\|107737_108097_+	50S ribosomal protein L19	NA	NA	NA	NA
QAR23106.1\|108366_109506_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	5.1e-43	33.3
QAR23107.1\|109639_112384_+	CRISPR-associated helicase/endonuclease Cas3	NA	NA	NA	NA
QAR24773.1\|112364_114029_+	type I-E CRISPR-associated protein Cse1/CasA	NA	NA	NA	NA
QAR23108.1\|114045_114630_+	CRISPR-associated protein CasB	NA	NA	NA	NA
QAR23109.1\|114641_115739_+	type I-E CRISPR-associated protein Cas7/Cse4/CasC	NA	NA	NA	NA
QAR24774.1\|115719_116427_+	type I-E CRISPR-associated protein Cas5/CasD	NA	NA	NA	NA
QAR23110.1\|116439_117096_+	type I-E CRISPR-associated protein Cas6/Cse3/CasE	NA	NA	NA	NA
QAR23111.1\|117092_118031_+	type I-E CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
QAR23112.1\|118034_118913_+	type I-E CRISPR-associated endoribonuclease Cas2	A0A0K2SUJ2	Clostridium_phage	1.8e-11	30.6
QAR23113.1\|121167_122166_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	1.0e-50	38.8
QAR23114.1\|122196_123165_-\|transposase	IS30 family transposase	NA	NA	NA	NA
QAR23115.1\|123273_124062_+	putative hydro-lyase	NA	NA	NA	NA
QAR23116.1\|124396_125362_+	aspartate carbamoyltransferase catalytic subunit	M1HGA5	Paramecium_bursaria_Chlorella_virus	3.8e-23	30.2
QAR23117.1\|125361_126651_+	dihydroorotase	NA	NA	NA	NA
QAR23118.1\|126652_127735_+	carbamoyl-phosphate synthase small subunit	R4TGJ8	Halovirus	1.5e-55	35.6
QAR23119.1\|127734_130914_+	carbamoyl-phosphate synthase large subunit	NA	NA	NA	NA
QAR23120.1\|130926_131844_+	dihydroorotate dehydrogenase	NA	NA	NA	NA
QAR23121.1\|136146_136635_+	hypothetical protein	NA	NA	NA	NA
QAR23122.1\|138157_138343_-	hypothetical protein	NA	NA	NA	NA
QAR23123.1\|138486_138990_+	type 1 glutamine amidotransferase	NA	NA	NA	NA
QAR23124.1\|139123_140122_-\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	5.0e-50	38.5
QAR23125.1\|141004_141292_+\|transposase	transposase	NA	NA	NA	NA
QAR23126.1\|141315_142194_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	9.8e-42	36.1

DBSCAN-SWA_3

270867 : 334029

Paenibacillus_phage(22.22%)

portal,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR23226.1\|270867_272877_-\|portal	portal protein	M1IBC2	Acanthocystis_turfacea_Chlorella_virus	2.0e-66	35.7
QAR23227.1\|273046_273367_+	hypothetical protein	NA	NA	NA	NA
QAR23228.1\|273363_273639_+	hypothetical protein	NA	NA	NA	NA
QAR23229.1\|273769_276670_+	hypothetical protein	NA	NA	NA	NA
QAR23230.1\|276854_277091_-	hypothetical protein	NA	NA	NA	NA
QAR24784.1\|277157_278540_-	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
QAR23231.1\|278872_279727_+	alpha/beta hydrolase	NA	NA	NA	NA
QAR23232.1\|279825_280689_-	SDR family oxidoreductase	NA	NA	NA	NA
QAR23233.1\|280742_281558_-	HAD family hydrolase	NA	NA	NA	NA
QAR23234.1\|281864_283355_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	4.1e-64	32.8
QAR23235.1\|285086_285356_+	chorismate mutase	NA	NA	NA	NA
QAR23236.1\|288354_289425_+	prephenate dehydrogenase	NA	NA	NA	NA
QAR23237.1\|289421_289943_+	shikimate kinase	NA	NA	NA	NA
QAR23238.1\|290122_291283_+	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
QAR23239.1\|291284_292268_+	D-2-hydroxyacid dehydrogenase	A0A1J0F959	Only_Syngen_Nebraska_virus	3.5e-40	31.4
QAR23240.1\|292353_292779_+\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	8.1e-10	29.1
QAR23241.1\|293650_293878_+	hypothetical protein	NA	NA	NA	NA
QAR23242.1\|293896_294688_+	type I methionyl aminopeptidase	NA	NA	NA	NA
QAR24785.1\|295005_295218_+	hypothetical protein	NA	NA	NA	NA
QAR23243.1\|295623_296610_-	polyprenyl synthetase family protein	NA	NA	NA	NA
QAR23244.1\|296691_297591_+	prenyltransferase	NA	NA	NA	NA
QAR23245.1\|297658_297829_-	FeoB-associated Cys-rich membrane protein	NA	NA	NA	NA
QAR23246.1\|299830_300040_-	ferrous iron transport protein A	NA	NA	NA	NA
QAR23247.1\|300274_301072_+	Fe-S cluster assembly ATPase SufC	A0A285PWH2	Cedratvirus	1.3e-08	25.1
QAR23248.1\|301083_302379_+	Fe-S cluster assembly protein SufD	NA	NA	NA	NA
QAR23249.1\|302362_303601_+	cysteine desulfurase	Q2XUY6	environmental_halophage	8.5e-108	46.4
QAR23250.1\|303587_304058_+	SUF system NifU family Fe-S cluster assembly protein	A0A0K1LSF9	Mycobacterium_phage	1.9e-12	34.6
QAR23251.1\|304044_305451_+	Fe-S cluster assembly protein SufB	NA	NA	NA	NA
QAR23252.1\|305612_306677_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
QAR23253.1\|307122_308346_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
QAR23254.1\|312347_312686_+	metal-sulfur cluster assembly factor	NA	NA	NA	NA
QAR23255.1\|312700_313588_+	XRE family transcriptional regulator	NA	NA	NA	NA
QAR23256.1\|313676_314393_+	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	NA	NA	NA	NA
QAR23257.1\|314610_314844_-	hypothetical protein	NA	NA	NA	NA
QAR24786.1\|314944_315862_-	hypothetical protein	NA	NA	NA	NA
QAR23258.1\|316145_316988_+	hypothetical protein	NA	NA	NA	NA
QAR23259.1\|317092_318595_-	glutamate--cysteine ligase	NA	NA	NA	NA
QAR23260.1\|318895_319429_+	VanZ family protein	NA	NA	NA	NA
QAR23261.1\|319633_320821_+	pyridoxal phosphate-dependent aminotransferase	NA	NA	NA	NA
QAR23262.1\|321082_321424_-	Fe-S cluster assembly protein HesB	NA	NA	NA	NA
QAR23263.1\|321436_322441_-	LacI family DNA-binding transcriptional regulator	NA	NA	NA	NA
QAR23264.1\|322719_324066_-	gluconate permease	NA	NA	NA	NA
QAR23265.1\|324087_325608_-	gluconate kinase	NA	NA	NA	NA
QAR23266.1\|325808_326750_-	Rgg/GadR/MutR family transcriptional regulator	NA	NA	NA	NA
QAR23267.1\|327009_328368_-\|transposase	IS4 family transposase	NA	NA	NA	NA
QAR23268.1\|328579_329500_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	4.8e-39	37.1
QAR23269.1\|329623_330422_+\|transposase	IS5 family transposase	NA	NA	NA	NA
QAR23270.1\|330956_331067_+	ABC transporter ATP-binding protein	NA	NA	NA	NA
QAR23271.1\|331098_332268_+	serine/threonine protein phosphatase	NA	NA	NA	NA
QAR23272.1\|332808_334029_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	1.8e-94	46.0

DBSCAN-SWA_4

348792 : 415758

Lactobacillus_phage(25.0%)

integrase,transposase

attL 399906:399920|attR 418369:418383

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR23288.1\|348792_349080_-\|transposase	transposase	NA	NA	NA	NA
QAR23289.1\|349653_351336_+	acetolactate synthase AlsS	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	3.2e-33	23.4
QAR23290.1\|351730_352372_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.4e-21	35.0
QAR23291.1\|352364_353132_+	iron export ABC transporter permease subunit FetB	NA	NA	NA	NA
QAR23292.1\|353183_353690_-	MerR family transcriptional regulator	NA	NA	NA	NA
QAR23293.1\|353804_354245_+	NADH-dependent oxidoreductase	NA	NA	NA	NA
QAR23294.1\|354328_355012_+	glycerophosphodiester phosphodiesterase	M1HE48	Acanthocystis_turfacea_Chlorella_virus	9.7e-13	30.7
QAR23295.1\|355008_355425_+	arsenate reductase ArsC	A0A2H4PQT9	Staphylococcus_phage	1.1e-14	36.6
QAR23296.1\|356335_357487_+	ArgE/DapE family deacylase	NA	NA	NA	NA
QAR23297.1\|357608_358940_+	guanine deaminase	NA	NA	NA	NA
QAR23298.1\|359115_360300_-	PLP-dependent aminotransferase family protein	NA	NA	NA	NA
QAR23299.1\|362239_363070_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
QAR23300.1\|363549_364662_+	hypothetical protein	NA	NA	NA	NA
QAR23301.1\|364802_365075_+	hypothetical protein	NA	NA	NA	NA
QAR24787.1\|365223_365757_+	phenolic acid decarboxylase	NA	NA	NA	NA
QAR23302.1\|365847_366390_+	PadR family transcriptional regulator	NA	NA	NA	NA
QAR23303.1\|366395_366833_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	1.6e-24	42.2
QAR23304.1\|366925_367225_-	DedA family protein	NA	NA	NA	NA
QAR23305.1\|367609_368845_-	DUF2075 domain-containing protein	NA	NA	NA	NA
QAR23306.1\|369003_370782_+	1-deoxy-D-xylulose-5-phosphate synthase	NA	NA	NA	NA
QAR23307.1\|371098_372061_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
QAR23308.1\|372335_373721_+	amino acid permease	NA	NA	NA	NA
QAR23309.1\|374528_375407_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.0e-42	36.4
QAR23310.1\|375430_375718_-\|transposase	transposase	NA	NA	NA	NA
QAR23311.1\|376258_376990_+	hypothetical protein	NA	NA	NA	NA
QAR23312.1\|376989_378348_+	C69 family dipeptidase	NA	NA	NA	NA
QAR23313.1\|378422_379310_+	DNA/RNA non-specific endonuclease	NA	NA	NA	NA
QAR23314.1\|379370_380258_-	3-hydroxyacyl-CoA dehydrogenase	NA	NA	NA	NA
QAR23315.1\|380643_382992_+	ATP-binding protein	NA	NA	NA	NA
QAR23316.1\|383128_383986_+	alpha/beta hydrolase	NA	NA	NA	NA
QAR23317.1\|384185_385385_+	hypothetical protein	NA	NA	NA	NA
QAR23318.1\|385381_386434_+	class A beta-lactamase-related serine hydrolase	NA	NA	NA	NA
QAR23319.1\|386446_386944_+	phosphatidylglycerophosphatase A	A0A291I9Q0	Lactobacillus_phage	1.1e-45	54.3
QAR23320.1\|387418_388519_-	AI-2E family transporter	NA	NA	NA	NA
QAR23321.1\|388528_389701_-	acetyl-CoA C-acetyltransferase	NA	NA	NA	NA
QAR23322.1\|389795_390653_-	patatin family protein	NA	NA	NA	NA
QAR23323.1\|390750_391686_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	3.3e-64	43.2
QAR23324.1\|391802_393656_+	flavocytochrome c	A0A2P0ZL82	Lactobacillus_phage	4.0e-210	60.6
QAR23325.1\|393913_394498_-	DUF4352 domain-containing protein	A0A0P0IXE0	Lactobacillus_phage	5.1e-39	61.2
QAR23326.1\|394739_395657_+	EamA family transporter	NA	NA	NA	NA
QAR23327.1\|395730_396093_+	hypothetical protein	NA	NA	NA	NA
QAR24788.1\|397367_397568_+	hypothetical protein	NA	NA	NA	NA
QAR23328.1\|397789_398182_-	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
QAR23329.1\|398238_399195_+	WYL domain-containing protein	NA	NA	NA	NA
QAR23330.1\|399385_400729_-	PFL family protein	NA	NA	NA	NA
399906:399920	attL	NA	NA	NA	NA
QAR23331.1\|400738_401005_-	ACT domain-containing protein	NA	NA	NA	NA
QAR23332.1\|401345_402257_+	PLP-dependent cysteine synthase family protein	A0A1X9I5K7	Streptococcus_phage	9.1e-59	40.5
QAR23333.1\|402269_403409_+	PLP-dependent transferase	A0A2I2L687	Orpheovirus	1.4e-08	26.4
QAR23334.1\|403636_404707_-	NAD(P)-dependent alcohol dehydrogenase	NA	NA	NA	NA
QAR23335.1\|404937_406131_-	MFS transporter	NA	NA	NA	NA
QAR23336.1\|406178_407603_-	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.3e-69	33.1
QAR23337.1\|407612_408434_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
QAR23338.1\|408468_408852_+	PaaI family thioesterase	NA	NA	NA	NA
QAR23339.1\|409148_410156_-\|transposase	IS30 family transposase	NA	NA	NA	NA
QAR23340.1\|410689_411265_+\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	1.7e-18	33.7
QAR23341.1\|414060_414840_+	alpha/beta hydrolase	A0A0A0RRH5	Mycobacterium_phage	1.5e-09	26.2
QAR23342.1\|415137_415758_+\|integrase	site-specific integrase	D2XR58	Bacillus_phage	5.1e-21	35.3
418369:418383	attR	NA	NA	NA	NA

DBSCAN-SWA_5

482743 : 491011

Staphylococcus_phage(28.57%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR23400.1\|482743_483370_-	chloramphenicol acetyltransferase	A0A2R8FE91	Brazilian_cedratvirus	4.0e-13	40.8
QAR23401.1\|483439_484618_+	3-phosphoglycerate dehydrogenase	M1NSB9	Streptococcus_phage	5.7e-61	36.5
QAR23402.1\|484751_485594_-	DegV family protein	A0A0N9SI50	Staphylococcus_phage	1.2e-15	32.6
QAR23403.1\|485760_486390_+	hemolysin III family protein	NA	NA	NA	NA
QAR23404.1\|486369_486873_-	dihydrofolate reductase	A0A1Y0SUI9	Pseudomonas_phage	5.4e-21	36.0
QAR23405.1\|486884_487844_-	thymidylate synthase	A0A0N9SH48	Staphylococcus_phage	1.7e-116	62.8
QAR23406.1\|487909_489796_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	5.0e-51	29.1
QAR23407.1\|489808_491011_-\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	4.4e-45	44.3

DBSCAN-SWA_6

539090 : 547412

Rhizobium_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR23448.1\|539090_540074_-	PhoH family protein	L7TP00	Rhizobium_phage	9.2e-49	49.3
QAR24791.1\|540221_540671_-	GatB/YqeY domain-containing protein	A0A292GL36	Xanthomonas_phage	1.5e-06	29.5
QAR23449.1\|540735_540924_-	30S ribosomal protein S21	NA	NA	NA	NA
QAR23450.1\|541037_541721_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
QAR23451.1\|542001_543777_-\|tRNA	aspartate--tRNA ligase	A0A1V0SIS0	Klosneuvirus	3.6e-11	25.7
QAR23452.1\|543780_545076_-\|tRNA	histidine--tRNA ligase	A0A2K9L0H9	Tupanvirus	2.6e-27	26.3
QAR23453.1\|545452_546481_+	lipoate--protein ligase	A0A2H4UVX5	Bodo_saltans_virus	7.0e-15	25.9
QAR23454.1\|546488_547412_+	N-acetylmuramoyl-L-alanine amidase	A0A2H4JCM7	uncultured_Caudovirales_phage	3.0e-17	35.2

DBSCAN-SWA_7

564234 : 616370

Staphylococcus_phage(40.0%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR23469.1\|564234_564672_-\|tRNA	D-tyrosyl-tRNA(Tyr) deacylase	NA	NA	NA	NA
QAR23470.1\|564681_566916_-	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A218M393	Acidovorax_phage	6.8e-07	43.5
QAR23471.1\|566931_567273_-	hypothetical protein	NA	NA	NA	NA
QAR23472.1\|568080_569043_-	50S ribosomal protein L11 methyltransferase	NA	NA	NA	NA
QAR23473.1\|569098_569425_-	hypothetical protein	NA	NA	NA	NA
QAR23474.1\|569901_570855_+	L-lactate dehydrogenase	NA	NA	NA	NA
QAR24793.1\|571041_571980_-	hypothetical protein	NA	NA	NA	NA
QAR23475.1\|572210_573917_-	hypothetical protein	NA	NA	NA	NA
QAR23476.1\|576016_576688_-	type II-A CRISPR-associated protein Csn2	NA	NA	NA	NA
QAR23477.1\|576684_576990_-	CRISPR-associated endonuclease Cas2	NA	NA	NA	NA
QAR23478.1\|576967_577873_-	type II CRISPR-associated endonuclease Cas1	NA	NA	NA	NA
QAR23479.1\|578078_582215_-	type II CRISPR RNA-guided endonuclease Cas9	NA	NA	NA	NA
QAR23480.1\|582471_584439_-	hypothetical protein	NA	NA	NA	NA
QAR23481.1\|584787_585573_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
QAR23482.1\|585574_586372_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
QAR23483.1\|586385_587027_+	thiamine phosphate synthase	NA	NA	NA	NA
QAR23484.1\|587088_587901_-	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
QAR23485.1\|587915_588359_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
QAR23486.1\|588447_589239_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QAR23487.1\|589483_589669_-	hypothetical protein	NA	NA	NA	NA
QAR23488.1\|589931_590825_-	LysR family transcriptional regulator	NA	NA	NA	NA
QAR23489.1\|590958_592044_+	NAD(P)-dependent alcohol dehydrogenase	A0A0K0KVL7	Prochlorococcus_phage	2.5e-23	26.2
QAR23490.1\|592652_593174_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
QAR23491.1\|593186_594035_-	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
QAR23492.1\|594568_595108_-	peptide-methionine (S)-S-oxide reductase	NA	NA	NA	NA
QAR23493.1\|595282_595963_+	DUF554 domain-containing protein	NA	NA	NA	NA
QAR23494.1\|595963_596575_+	cadmium transporter	NA	NA	NA	NA
QAR23495.1\|598024_599197_-	cysteine desulfurase	NA	NA	NA	NA
QAR23496.1\|600749_601808_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	6.9e-42	34.5
QAR23497.1\|601807_602416_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-24	38.0
QAR23498.1\|602402_603596_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	4.2e-96	48.4
QAR23499.1\|603588_604059_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.1e-26	42.9
QAR23500.1\|604264_605551_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.0e-47	31.2
QAR23501.1\|606379_606850_+\|transposase	transposase	A0A0C5AJ29	Paenibacillus_phage	1.0e-13	29.9
QAR23502.1\|607558_607699_-	hypothetical protein	NA	NA	NA	NA
QAR23503.1\|607709_607961_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
QAR23504.1\|607975_608518_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
QAR23505.1\|608545_608731_-	DUF2273 domain-containing protein	NA	NA	NA	NA
QAR23506.1\|608742_609303_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA
QAR23507.1\|609478_610645_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	8.0e-92	47.6
QAR23508.1\|610866_611115_+	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
QAR24794.1\|612338_613709_+	MFS transporter	NA	NA	NA	NA
QAR23509.1\|613730_614747_+	general stress protein	NA	NA	NA	NA
QAR23510.1\|615171_615459_+\|transposase	transposase	NA	NA	NA	NA
QAR24795.1\|615524_616370_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.1e-37	33.2

DBSCAN-SWA_8

633928 : 685408

Streptococcus_phage(23.53%)

tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR23525.1\|633928_634825_+\|transposase	IS3 family transposase	NA	NA	NA	NA
QAR23526.1\|634870_636208_-	MFS transporter	NA	NA	NA	NA
QAR23527.1\|636216_637911_-	alpha-glucosidase	NA	NA	NA	NA
QAR23528.1\|638068_639055_+	LacI family transcriptional regulator	NA	NA	NA	NA
QAR23529.1\|639210_640077_+	nucleotidyltransferase	Q6DMX4	Streptococcus_phage	3.3e-34	37.1
QAR23530.1\|639902_640502_+	hypothetical protein	M1Q231	Streptococcus_phage	4.1e-23	34.2
QAR23531.1\|641717_642005_+\|transposase	transposase	NA	NA	NA	NA
QAR23532.1\|642028_642907_+\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	2.6e-42	36.1
QAR23533.1\|643861_644584_-	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
QAR23534.1\|645324_646725_-	amino acid permease	NA	NA	NA	NA
QAR23535.1\|646938_647937_+\|transposase	IS30 family transposase	W5R8L2	Staphylococcus_phage	9.4e-49	37.8
QAR23536.1\|648058_648346_+\|transposase	transposase	Q6J1X3	Lactobacillus_phage	9.0e-37	95.2
QAR23537.1\|648399_649242_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	2.6e-153	96.8
QAR23538.1\|651036_652002_-	riboflavin biosynthesis protein RibF	NA	NA	NA	NA
QAR23539.1\|652012_652909_-\|tRNA	tRNA pseudouridine(55) synthase TruB	NA	NA	NA	NA
QAR23540.1\|652978_653341_-	30S ribosome-binding factor RbfA	NA	NA	NA	NA
QAR23541.1\|653353_655681_-	translation initiation factor IF-2	A0A2H4UTS4	Bodo_saltans_virus	5.6e-20	24.6
QAR23542.1\|655685_656009_-	YlxQ-related RNA-binding protein	NA	NA	NA	NA
QAR23543.1\|656001_656304_-	YlxR family protein	NA	NA	NA	NA
QAR23544.1\|656340_657567_-	transcription termination/antitermination protein NusA	NA	NA	NA	NA
QAR23545.1\|657586_658066_-	ribosome maturation factor RimP	NA	NA	NA	NA
QAR23546.1\|658457_662801_-	PolC-type DNA polymerase III	A0A0A7RWA3	Clostridium_phage	1.9e-16	30.8
QAR23547.1\|662940_664662_-\|tRNA	proline--tRNA ligase	A0A2K9L6B6	Tupanvirus	1.8e-07	25.9
QAR23548.1\|665987_666776_-	phosphatidate cytidylyltransferase	NA	NA	NA	NA
QAR23549.1\|666792_667560_-	isoprenyl transferase	R9W0U9	Flavobacterium_phage	2.3e-18	35.3
QAR23550.1\|667692_668256_-	ribosome recycling factor	NA	NA	NA	NA
QAR23551.1\|668252_668978_-	UMP kinase	NA	NA	NA	NA
QAR23552.1\|669058_669937_-	elongation factor Ts	NA	NA	NA	NA
QAR23553.1\|670027_670807_-	30S ribosomal protein S2	NA	NA	NA	NA
QAR23554.1\|670960_671251_-	GIY-YIG nuclease family protein	W8W2G4	Invertebrate_iridovirus	1.8e-05	38.0
QAR23555.1\|671243_671996_-\|tRNA	tRNA1(Val) (adenine(37)-N6)-methyltransferase	NA	NA	NA	NA
QAR23556.1\|672091_672724_+	1-acyl-sn-glycerol-3-phosphate acyltransferase	NA	NA	NA	NA
QAR23557.1\|672790_673018_-	YneF family protein	NA	NA	NA	NA
QAR23558.1\|673094_673346_-	DUF896 domain-containing protein	NA	NA	NA	NA
QAR23559.1\|673501_674128_+	transcriptional repressor LexA	A0A1B2APZ1	Phage_Wrath	3.8e-16	52.9
QAR23560.1\|674357_675527_-	hydroxymethylglutaryl-CoA synthase	NA	NA	NA	NA
QAR23561.1\|676136_677387_-\|transposase	transposase	A0A286QQE5	Streptococcus_phage	2.2e-55	37.5
QAR23562.1\|678284_679424_-\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	3.0e-43	33.3
QAR23563.1\|679641_679956_+	ArsR family transcriptional regulator	NA	NA	NA	NA
QAR23564.1\|680218_681005_+\|transposase	IS5 family transposase	NA	NA	NA	NA
QAR23565.1\|680999_681374_+	pyridoxamine 5'-phosphate oxidase family protein	NA	NA	NA	NA
QAR23566.1\|681505_682870_+	FAD-dependent oxidoreductase	A0A2K5B2C5	Erysipelothrix_phage	9.9e-09	25.0
QAR23567.1\|682849_682975_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
QAR23568.1\|682976_684263_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	1.0e-47	31.2
QAR23569.1\|684478_685408_+\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	6.7e-25	29.8

DBSCAN-SWA_9

689024 : 736513

unidentified_phage(21.05%)

protease,integrase,transposase

attL 696756:696771|attR 745952:745967

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR23573.1\|689024_689954_+\|transposase	IS30 family transposase	H7BW47	unidentified_phage	6.1e-26	34.8
QAR23574.1\|690227_692066_-	cadmium-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	2.6e-68	28.9
QAR23575.1\|692258_693182_-\|transposase	IS30 family transposase	H7BVY4	unidentified_phage	2.4e-30	31.3
QAR23576.1\|693349_694045_+	response regulator transcription factor	W8CYM9	Bacillus_phage	1.4e-35	36.7
QAR23577.1\|694054_695413_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.2e-17	27.9
QAR23578.1\|695629_696280_+	cytochrome O ubiquinol oxidase	NA	NA	NA	NA
QAR23579.1\|696269_696941_+	phosphatase PAP2 family protein	NA	NA	NA	NA
696756:696771	attL	NA	NA	NA	NA
QAR23580.1\|696922_697870_+	glycosyltransferase	F1C5B0	Cronobacter_phage	2.4e-46	37.5
QAR23581.1\|697879_699814_+	hypothetical protein	NA	NA	NA	NA
QAR23582.1\|700299_700797_-	protein TrsD	NA	NA	NA	NA
QAR23583.1\|701021_702242_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.8e-95	46.2
QAR23584.1\|702324_703326_+\|integrase	site-specific integrase	A0A0M9JJ77	Lactobacillus_phage	7.1e-89	50.2
QAR23585.1\|703285_703603_-	hypothetical protein	NA	NA	NA	NA
QAR23586.1\|704336_705476_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	3.9e-43	33.3
QAR23587.1\|706119_706740_-	DUF308 domain-containing protein	NA	NA	NA	NA
QAR23588.1\|706841_707288_+	nucleoside 2-deoxyribosyltransferase	A0A1D3SPR3	Enterococcus_phage	2.4e-20	36.7
QAR23589.1\|707309_708299_+	LacI family transcriptional regulator	NA	NA	NA	NA
QAR23590.1\|708309_708750_+	hypothetical protein	NA	NA	NA	NA
QAR23591.1\|708831_709776_-	3-hydroxyacyl-CoA dehydrogenase family protein	NA	NA	NA	NA
QAR24796.1\|709860_710136_-	hypothetical protein	NA	NA	NA	NA
QAR23592.1\|712101_713691_+	asparagine synthase B	A0A0G2Y369	Acanthamoeba_polyphaga_mimivirus	5.6e-104	39.9
QAR23593.1\|714182_715370_-\|transposase	IS256 family transposase	NA	NA	NA	NA
QAR23594.1\|715822_717043_-\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	3.1e-94	46.0
QAR23595.1\|717696_718836_+\|transposase	IS30 family transposase	H7BUM7	unidentified_phage	3.0e-43	33.3
QAR23596.1\|719161_719470_+	hypothetical protein	NA	NA	NA	NA
QAR23597.1\|719697_720027_-	antibiotic biosynthesis monooxygenase	NA	NA	NA	NA
QAR23598.1\|720026_720308_-	hypothetical protein	NA	NA	NA	NA
QAR23599.1\|720318_720855_-	flavodoxin family protein	NA	NA	NA	NA
QAR23600.1\|720857_721280_-	MerR family transcriptional regulator	NA	NA	NA	NA
QAR23601.1\|721621_722431_-	2-keto-4-pentenoate hydratase	NA	NA	NA	NA
QAR23602.1\|722932_723931_+	D-2-hydroxyacid dehydrogenase	M1HTA3	Paramecium_bursaria_Chlorella_virus	1.8e-47	34.0
QAR23603.1\|724817_725345_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	2.3e-30	44.0
QAR23604.1\|725358_727656_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	2.6e-70	29.3
QAR23605.1\|727728_728568_-	SDR family oxidoreductase	NA	NA	NA	NA
QAR23606.1\|728588_729521_-	ribonuclease Z	NA	NA	NA	NA
QAR23607.1\|729547_730855_-	GTPase ObgE	NA	NA	NA	NA
QAR23608.1\|730919_732731_-	excinuclease ABC subunit UvrC	NA	NA	NA	NA
QAR23609.1\|733009_733756_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.6e-29	37.3
QAR23610.1\|734356_734656_-	nucleotide pyrophosphohydrolase	A0A1S7FYY8	Listeria_phage	6.9e-24	51.5
QAR23611.1\|734655_735249_-	YihA family ribosome biogenesis GTP-binding protein	NA	NA	NA	NA
QAR23612.1\|735262_736513_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	G3M9Z9	Bacillus_virus	8.2e-135	56.9
745952:745967	attR	NA	NA	NA	NA

DBSCAN-SWA_10

1078614 : 1087086

Streptococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR23918.1\|1078614_1079655_-	DNA polymerase III subunit delta'	M1NSC1	Streptococcus_phage	2.8e-27	31.9
QAR23919.1\|1079672_1079993_-	hypothetical protein	NA	NA	NA	NA
QAR23920.1\|1080005_1080650_-	dTMP kinase	M1PSC7	Streptococcus_phage	3.7e-54	52.6
QAR23921.1\|1080669_1080918_-	DUF2508 family protein	NA	NA	NA	NA
QAR23922.1\|1080919_1081519_-	recombination protein RecR	NA	NA	NA	NA
QAR23923.1\|1081534_1081843_-	YbaB/EbfC family nucleoid-associated protein	NA	NA	NA	NA
QAR23924.1\|1081865_1083557_-	DNA polymerase III subunit gamma/tau	A0A1U9WR94	Streptococcus_virus	2.3e-55	38.6
QAR23925.1\|1083851_1084337_-	nucleoside deaminase	A0A2H4PQS8	Staphylococcus_phage	2.8e-06	33.8
QAR23926.1\|1084593_1084815_+	glutaredoxin-like protein NrdH	A0A0M7REK7	Lactobacillus_phage	3.2e-10	46.5
QAR23927.1\|1084914_1087086_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A8E2R1	Enterococcus_phage	1.0e-249	59.5

DBSCAN-SWA_11

1107833 : 1181298

Phaeocystis_globosa_virus(10.0%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR23947.1\|1107833_1109252_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	6.0e-49	31.1
QAR23948.1\|1109599_1110169_-	TIGR01440 family protein	NA	NA	NA	NA
QAR23949.1\|1110236_1111733_-\|tRNA	glutamate--tRNA ligase	NA	NA	NA	NA
QAR23950.1\|1111803_1112937_-	PIN/TRAM domain-containing protein	NA	NA	NA	NA
QAR23951.1\|1112968_1114342_-	DNA repair protein RadA	NA	NA	NA	NA
QAR23952.1\|1114354_1114894_-	dUTP diphosphatase	J9PV85	Bacillus_phage	5.2e-38	47.8
QAR23953.1\|1115094_1115406_+	N-acetyltransferase	NA	NA	NA	NA
QAR23954.1\|1115608_1116859_-\|transposase	transposase	A0A286QQE5	Streptococcus_phage	1.1e-54	37.2
QAR23955.1\|1117417_1118104_+	ribose-5-phosphate isomerase RpiA	NA	NA	NA	NA
QAR23956.1\|1118131_1118746_+	sugar O-acetyltransferase	NA	NA	NA	NA
QAR23957.1\|1118809_1120147_+	aminopeptidase	R4TV59	Phaeocystis_globosa_virus	8.9e-71	35.9
QAR23958.1\|1122307_1123264_-	AEC family transporter	NA	NA	NA	NA
QAR23959.1\|1123406_1124369_-	beta-galactosidase small subunit	NA	NA	NA	NA
QAR23960.1\|1124352_1126233_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	3.3e-95	33.0
QAR23961.1\|1126519_1126975_-	SprT family protein	NA	NA	NA	NA
QAR23962.1\|1126967_1129145_-	RNA-binding transcriptional accessory protein	NA	NA	NA	NA
QAR23963.1\|1129148_1129979_-	ammonia-dependent NAD(+) synthetase	G3MA24	Bacillus_virus	2.1e-78	56.5
QAR23964.1\|1129995_1131456_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	2.8e-110	45.9
QAR23965.1\|1131486_1132188_-	GntR family transcriptional regulator	NA	NA	NA	NA
QAR23966.1\|1132389_1133553_-\|transposase	transposase	Q5ULQ4	Lactobacillus_virus	1.1e-157	70.9
QAR23967.1\|1134167_1134881_-	amino acid racemase	NA	NA	NA	NA
QAR23968.1\|1134964_1135606_-	hypothetical protein	NA	NA	NA	NA
QAR23969.1\|1135902_1136748_-	phosphoesterase	NA	NA	NA	NA
QAR23970.1\|1136841_1138338_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	7.9e-68	32.7
QAR23971.1\|1138570_1140796_-	SEC10/PgrA surface exclusion domain-containing protein	NA	NA	NA	NA
QAR23972.1\|1142193_1145874_-	dextransucrase	NA	NA	NA	NA
QAR23973.1\|1146050_1146272_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
QAR23974.1\|1146273_1146630_-\|transposase	transposase	S5WJH4	Leptospira_phage	7.3e-12	47.7
QAR23975.1\|1146619_1146808_-	hypothetical protein	NA	NA	NA	NA
QAR23976.1\|1146902_1148465_-	hypothetical protein	NA	NA	NA	NA
QAR23977.1\|1148625_1148742_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
QAR23978.1\|1148872_1149232_+	hypothetical protein	NA	NA	NA	NA
QAR23979.1\|1149926_1150799_-	SDR family oxidoreductase	Q06VL0	Trichoplusia_ni_ascovirus	5.3e-40	40.2
QAR23980.1\|1150973_1151387_-	glucose starvation-inducible protein B	NA	NA	NA	NA
QAR23981.1\|1158592_1160086_-\|tRNA	lysine--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.6e-89	41.4
QAR23982.1\|1160101_1161103_-\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
QAR23983.1\|1161191_1162073_-	Hsp33 family molecular chaperone HslO	NA	NA	NA	NA
QAR23984.1\|1162149_1164315_-\|protease	ATP-dependent zinc metalloprotease FtsH	A0A0P0CCN8	Ostreococcus_mediterraneus_virus	9.6e-107	48.8
QAR23985.1\|1164398_1164947_-	hypoxanthine phosphoribosyltransferase	A0A2K9L634	Tupanvirus	1.7e-12	30.8
QAR23986.1\|1164963_1166313_-\|tRNA	tRNA lysidine(34) synthetase TilS	R4TVK3	Phaeocystis_globosa_virus	2.5e-12	26.6
QAR23987.1\|1166312_1166819_-	RNA-binding protein S1	NA	NA	NA	NA
QAR23988.1\|1166948_1167305_-	septum formation initiator family protein	NA	NA	NA	NA
QAR23989.1\|1167393_1167666_-	RNA-binding S4 domain-containing protein	NA	NA	NA	NA
QAR23990.1\|1167662_1171205_-	transcription-repair coupling factor	NA	NA	NA	NA
QAR23991.1\|1171222_1171783_-\|tRNA	aminoacyl-tRNA hydrolase	NA	NA	NA	NA
QAR23992.1\|1171970_1172606_+	CBS domain-containing protein	NA	NA	NA	NA
QAR23993.1\|1172738_1173092_-	type II toxin-antitoxin system PemK/MazF family toxin	A0A1S5RCS0	Lactobacillus_phage	7.7e-14	40.0
QAR23994.1\|1173103_1174225_-	alanine racemase	A0A0P0YM39	Yellowstone_lake_mimivirus	3.2e-29	28.9
QAR23995.1\|1174227_1174587_-	holo-ACP synthase	NA	NA	NA	NA
QAR23996.1\|1174590_1176069_-	DEAD/DEAH box helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	1.5e-71	39.3
QAR23997.1\|1176239_1177619_-	UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase	NA	NA	NA	NA
QAR23998.1\|1177793_1178693_-\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
QAR23999.1\|1178703_1179261_-	LemA family protein	A0A1X9IGG1	Lactococcus_phage	1.8e-12	32.4
QAR24000.1\|1179397_1179862_+	low molecular weight phosphotyrosine protein phosphatase	NA	NA	NA	NA
QAR24001.1\|1180047_1181298_-\|transposase	transposase	A0A288TXV8	Enterococcus_phage	1.7e-55	36.9

DBSCAN-SWA_12

1252699 : 1292490

Streptococcus_phage(36.36%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR24052.1\|1252699_1253950_-\|transposase	transposase	A0A286QQE5	Streptococcus_phage	7.6e-56	37.8
QAR24053.1\|1254876_1256181_+	MFS transporter	Q6JIH2	Burkholderia_virus	8.2e-45	27.2
QAR24054.1\|1256417_1257179_-	ABC transporter ATP-binding protein	A0A2R8FG22	Brazilian_cedratvirus	6.3e-13	24.6
QAR24055.1\|1257171_1258098_-	iron ABC transporter permease	NA	NA	NA	NA
QAR24056.1\|1258099_1258978_-	heme ABC transporter substrate-binding protein IsdE	NA	NA	NA	NA
QAR24057.1\|1258992_1259784_-	cell surface protein	NA	NA	NA	NA
QAR24058.1\|1259773_1261630_-	hypothetical protein	NA	NA	NA	NA
QAR24059.1\|1261825_1263508_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
QAR24060.1\|1264059_1264398_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
QAR24061.1\|1264747_1265998_-\|transposase	transposase	A0A286QQE5	Streptococcus_phage	2.9e-55	36.8
QAR24062.1\|1266076_1266529_+\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.1e-32	51.5
QAR24063.1\|1266627_1267212_-	hypothetical protein	NA	NA	NA	NA
QAR24064.1\|1267999_1268368_-	DUF2255 family protein	NA	NA	NA	NA
QAR24065.1\|1268861_1269056_-	CsbD family protein	NA	NA	NA	NA
QAR24066.1\|1270030_1270285_-	short-chain dehydrogenase/reductase family oxidoreductase	NA	NA	NA	NA
QAR24067.1\|1270699_1271356_-	nitroreductase	NA	NA	NA	NA
QAR24068.1\|1271557_1271986_+	Crp/Fnr family transcriptional regulator	NA	NA	NA	NA
QAR24069.1\|1271963_1272098_+	hypothetical protein	NA	NA	NA	NA
QAR24070.1\|1272092_1272482_-	tautomerase family protein	NA	NA	NA	NA
QAR24071.1\|1272607_1273243_+	DUF4767 domain-containing protein	NA	NA	NA	NA
QAR24806.1\|1273574_1273973_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-45	62.9
QAR24072.1\|1273972_1275148_+\|transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	2.7e-119	56.7
QAR24073.1\|1275285_1275792_+	hypothetical protein	NA	NA	NA	NA
QAR24074.1\|1275953_1276439_+	hypothetical protein	NA	NA	NA	NA
QAR24075.1\|1282412_1282889_+	nucleoside 2-deoxyribosyltransferase	A0A2P0ZL88	Lactobacillus_phage	4.5e-17	35.2
QAR24076.1\|1282936_1284319_-	MFS transporter	NA	NA	NA	NA
QAR24077.1\|1284599_1286531_-	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	2.4e-93	38.3
QAR24078.1\|1286530_1286839_-	cupredoxin domain-containing protein	NA	NA	NA	NA
QAR24079.1\|1286852_1287224_-	cupredoxin domain-containing protein	NA	NA	NA	NA
QAR24080.1\|1287708_1288713_-	hypothetical protein	NA	NA	NA	NA
QAR24081.1\|1288825_1290004_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
QAR24082.1\|1290127_1290823_-	2,3-diphosphoglycerate-dependent phosphoglycerate mutase	A0A1X9IGJ2	Lactococcus_phage	4.0e-06	30.5
QAR24083.1\|1291239_1292490_-\|transposase	transposase	A0A286QQE5	Streptococcus_phage	3.8e-55	37.5

DBSCAN-SWA_13

1309680 : 1338798

Streptococcus_phage(15.38%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR24098.1\|1309680_1310931_-\|transposase	transposase	A0A286QQE5	Streptococcus_phage	4.9e-55	37.5
QAR24099.1\|1311005_1311455_+\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	9.4e-33	50.4
QAR24100.1\|1311507_1313169_-	formate--tetrahydrofolate ligase	NA	NA	NA	NA
QAR24101.1\|1313256_1314297_-	AI-2E family transporter	NA	NA	NA	NA
QAR24102.1\|1314557_1315772_+	class I SAM-dependent methyltransferase	A0A2I2L5L3	Orpheovirus	2.0e-45	32.7
QAR24103.1\|1316162_1316708_-	serine hydrolase family protein	NA	NA	NA	NA
QAR24104.1\|1316986_1318162_-\|transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	3.5e-119	56.7
QAR24807.1\|1318161_1318560_-\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-45	62.9
QAR24808.1\|1318743_1319163_-	AzlD domain-containing protein	NA	NA	NA	NA
QAR24105.1\|1319162_1320038_-	branched-chain amino acid ABC transporter permease	NA	NA	NA	NA
QAR24106.1\|1320381_1321677_-	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	5.7e-06	25.0
QAR24107.1\|1321676_1322819_-	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	1.9e-29	30.0
QAR24809.1\|1323016_1323706_-	response regulator transcription factor	W8CYM9	Bacillus_phage	2.4e-35	36.6
QAR24108.1\|1323902_1324409_+	cupin domain-containing protein	A0A291ATU0	Pandoravirus	4.3e-10	34.3
QAR24109.1\|1324432_1324777_+	DUF1828 domain-containing protein	NA	NA	NA	NA
QAR24110.1\|1325440_1325965_+	acyltransferase	NA	NA	NA	NA
QAR24111.1\|1326397_1327054_-	hypothetical protein	NA	NA	NA	NA
QAR24112.1\|1327155_1328343_-\|transposase	IS256 family transposase	NA	NA	NA	NA
QAR24113.1\|1328592_1329306_+\|transposase	transposase	NA	NA	NA	NA
QAR24114.1\|1329293_1330178_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	2.4e-11	24.5
QAR24115.1\|1331274_1332669_-	hypothetical protein	NA	NA	NA	NA
QAR24116.1\|1332661_1333750_-	polysaccharide pyruvyl transferase family protein	NA	NA	NA	NA
QAR24117.1\|1333803_1334736_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.0e-41	37.7
QAR24118.1\|1335009_1336230_+\|transposase	IS256 family transposase	A0A0K2CZ57	Paenibacillus_phage	2.8e-95	46.5
QAR24119.1\|1336495_1337701_-	polymerase	NA	NA	NA	NA
QAR24120.1\|1337865_1338798_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	7.4e-40	37.1

DBSCAN-SWA_14

1629412 : 1706162

Streptococcus_phage(20.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR24350.1\|1629412_1630831_-\|transposase	transposase	A0A288TXV8	Enterococcus_phage	8.1e-54	34.4
QAR24351.1\|1630913_1631378_+\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	8.0e-35	51.8
QAR24821.1\|1631433_1633047_+	APC family permease	NA	NA	NA	NA
QAR24352.1\|1633395_1634118_+	nicotinamide mononucleotide transporter	NA	NA	NA	NA
QAR24353.1\|1634179_1635289_-	o-succinylbenzoate synthase	NA	NA	NA	NA
QAR24354.1\|1635461_1636739_-	GTPase HflX	NA	NA	NA	NA
QAR24355.1\|1636760_1637405_-	histidine phosphatase family protein	A0A1X9IGJ2	Lactococcus_phage	3.7e-06	30.2
QAR24356.1\|1637529_1638186_-	cytochrome O ubiquinol oxidase	NA	NA	NA	NA
QAR24357.1\|1638368_1640663_+	ATP-dependent DNA helicase	NA	NA	NA	NA
QAR24358.1\|1640875_1641781_-	DMT family transporter	NA	NA	NA	NA
QAR24359.1\|1642014_1644108_+	LTA synthase family protein	W6LM83	Streptococcus_phage	1.2e-149	45.1
QAR24360.1\|1644396_1645146_+	SDR family oxidoreductase	W8CYX9	Bacillus_phage	6.7e-07	35.5
QAR24361.1\|1645371_1645923_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
QAR24362.1\|1646033_1646957_+	type I pantothenate kinase	A0A1B1ISL9	uncultured_Mediterranean_phage	1.2e-29	34.2
QAR24822.1\|1647138_1647537_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	3.3e-45	62.1
QAR24363.1\|1647536_1648712_+\|transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	9.2e-112	53.9
QAR24364.1\|1649123_1650377_-	HAMP domain-containing histidine kinase	NA	NA	NA	NA
QAR24365.1\|1650389_1651061_-	response regulator transcription factor	W8CYM9	Bacillus_phage	5.2e-19	29.6
QAR24366.1\|1651074_1651686_-	GTP pyrophosphokinase family protein	NA	NA	NA	NA
QAR24367.1\|1652000_1653554_+	glutamine-hydrolyzing GMP synthase	A0A1V0SH76	Hokovirus	3.0e-17	28.0
QAR24368.1\|1654213_1656556_+	nitric-oxide reductase large subunit	NA	NA	NA	NA
QAR24369.1\|1657173_1659927_-	cation-transporting P-type ATPase	M1HBF8	Paramecium_bursaria_Chlorella_virus	4.9e-63	29.4
QAR24370.1\|1661385_1661958_+	DUF4767 domain-containing protein	NA	NA	NA	NA
QAR24371.1\|1662005_1662326_+	ArsR family transcriptional regulator	NA	NA	NA	NA
QAR24372.1\|1665242_1665911_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QAR24373.1\|1665997_1667983_+	ABC transporter ATP-binding protein/permease	G9BWD6	Planktothrix_phage	7.1e-32	38.3
QAR24374.1\|1668199_1668673_+	FMN-binding protein	NA	NA	NA	NA
QAR24375.1\|1668676_1669453_+	FAD:protein FMN transferase	NA	NA	NA	NA
QAR24376.1\|1669436_1670711_+	iron reductase	NA	NA	NA	NA
QAR24377.1\|1671529_1672555_-	M20 family peptidase	NA	NA	NA	NA
QAR24378.1\|1672283_1673630_+	LPXTG cell wall anchor domain-containing protein	NA	NA	NA	NA
QAR24379.1\|1673724_1676295_-	ABC transporter permease	NA	NA	NA	NA
QAR24380.1\|1676295_1676997_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.1e-35	41.3
QAR24381.1\|1677160_1679038_+	hypothetical protein	NA	NA	NA	NA
QAR24382.1\|1679248_1680538_+	argininosuccinate synthase	NA	NA	NA	NA
QAR24383.1\|1680537_1681920_+	argininosuccinate lyase	NA	NA	NA	NA
QAR24384.1\|1682770_1683601_+	YbgC/FadM family acyl-CoA thioesterase	NA	NA	NA	NA
QAR24385.1\|1684525_1685980_+	amino acid permease	NA	NA	NA	NA
QAR24386.1\|1685960_1687313_+	aspartate aminotransferase family protein	NA	NA	NA	NA
QAR24387.1\|1687679_1687928_+	hypothetical protein	NA	NA	NA	NA
QAR24388.1\|1687868_1688795_-	AEC family transporter	NA	NA	NA	NA
QAR24389.1\|1688942_1689257_+	thioredoxin	A0A1X9I9P5	Staphylococcus_phage	6.2e-15	34.0
QAR24390.1\|1689461_1690793_+	NAD(P)/FAD-dependent oxidoreductase	A0A2I2L5E1	Orpheovirus	4.5e-06	27.6
QAR24391.1\|1691288_1692575_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	7.8e-48	31.2
QAR24392.1\|1692731_1693901_+	MFS transporter	NA	NA	NA	NA
QAR24393.1\|1693992_1695204_-	divalent metal cation transporter	NA	NA	NA	NA
QAR24394.1\|1695216_1695966_-	5-oxoprolinase subunit PxpA	NA	NA	NA	NA
QAR24395.1\|1695952_1697341_-	acetyl-CoA carboxylase biotin carboxylase subunit	NA	NA	NA	NA
QAR24396.1\|1697312_1697741_-	acetyl-CoA carboxylase biotin carboxyl carrier protein subunit	NA	NA	NA	NA
QAR24397.1\|1697743_1698760_-	biotin-dependent carboxyltransferase family protein	NA	NA	NA	NA
QAR24398.1\|1698760_1699495_-	5-oxoprolinase subunit PxpB	NA	NA	NA	NA
QAR24399.1\|1700317_1700776_-	hypothetical protein	NA	NA	NA	NA
QAR24400.1\|1700772_1702293_-	LytTR family transcriptional regulator	M1Q231	Streptococcus_phage	8.4e-33	28.2
QAR24401.1\|1702588_1703110_-	N-acetyltransferase	NA	NA	NA	NA
QAR24402.1\|1703128_1703725_-	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	S5M633	Brevibacillus_phage	6.2e-32	51.0
QAR24823.1\|1703875_1704928_+	aspartate--ammonia ligase	A0A1C9C5F0	Heterosigma_akashiwo_virus	3.0e-61	43.0
QAR24403.1\|1704937_1705636_+	noncanonical pyrimidine nucleotidase, YjjG family	NA	NA	NA	NA
QAR24404.1\|1705709_1706162_-\|transposase	IS200/IS605 family transposase	A0A0P0IQC6	Lactobacillus_phage	2.1e-32	51.5

DBSCAN-SWA_15

1797413 : 1845476

Streptococcus_phage(33.33%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR24475.1\|1797413_1798700_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	7.8e-48	31.2
QAR24476.1\|1798964_1801469_-\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	3.7e-126	39.8
QAR24477.1\|1801487_1801958_-	CtsR family transcriptional regulator	NA	NA	NA	NA
QAR24478.1\|1802160_1803093_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	2.0e-40	37.7
QAR24479.1\|1803165_1804185_-	alcohol dehydrogenase AdhP	E3SJ82	Synechococcus_phage	7.4e-17	26.8
QAR24480.1\|1804470_1805187_+	hypothetical protein	NA	NA	NA	NA
QAR24481.1\|1805247_1805913_-	hypothetical protein	NA	NA	NA	NA
QAR24482.1\|1807181_1807724_-	cobalt ABC transporter permease	NA	NA	NA	NA
QAR24483.1\|1808070_1808901_+	undecaprenyl-diphosphate phosphatase	NA	NA	NA	NA
QAR24484.1\|1809105_1810392_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	7.8e-48	31.2
QAR24485.1\|1810506_1811100_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QAR24486.1\|1811315_1814897_+	DNA-directed RNA polymerase subunit beta	A0A1B1ISA9	uncultured_Mediterranean_phage	2.0e-53	24.3
QAR24487.1\|1814934_1818582_+	DNA-directed RNA polymerase subunit beta'	A0A0N9QZ01	Chrysochromulina_ericina_virus	1.3e-60	24.2
QAR24488.1\|1819532_1820708_+	DUF998 domain-containing protein	NA	NA	NA	NA
QAR24489.1\|1820899_1821565_-	prepilin peptidase	NA	NA	NA	NA
QAR24490.1\|1821817_1822231_+	30S ribosomal protein S12	NA	NA	NA	NA
QAR24491.1\|1822255_1822726_+	30S ribosomal protein S7	NA	NA	NA	NA
QAR24492.1\|1822848_1824933_+	elongation factor G	E4ZFJ7	Streptococcus_phage	5.5e-67	28.5
QAR24493.1\|1825318_1825627_+	30S ribosomal protein S10	NA	NA	NA	NA
QAR24494.1\|1825674_1826337_+	50S ribosomal protein L3	NA	NA	NA	NA
QAR24495.1\|1826355_1826979_+	50S ribosomal protein L4	NA	NA	NA	NA
QAR24496.1\|1826978_1827272_+	50S ribosomal protein L23	NA	NA	NA	NA
QAR24497.1\|1827297_1828143_+	50S ribosomal protein L2	NA	NA	NA	NA
QAR24498.1\|1828183_1828465_+	30S ribosomal protein S19	NA	NA	NA	NA
QAR24499.1\|1828481_1828829_+	50S ribosomal protein L22	NA	NA	NA	NA
QAR24500.1\|1828841_1829501_+	30S ribosomal protein S3	NA	NA	NA	NA
QAR24501.1\|1829504_1829939_+	50S ribosomal protein L16	NA	NA	NA	NA
QAR24502.1\|1829928_1830135_+	50S ribosomal protein L29	NA	NA	NA	NA
QAR24503.1\|1830157_1830424_+	30S ribosomal protein S17	NA	NA	NA	NA
QAR24504.1\|1830484_1830853_+	50S ribosomal protein L14	NA	NA	NA	NA
QAR24505.1\|1830886_1831195_+	50S ribosomal protein L24	NA	NA	NA	NA
QAR24506.1\|1831224_1831767_+	50S ribosomal protein L5	NA	NA	NA	NA
QAR24507.1\|1831783_1831969_+	type Z 30S ribosomal protein S14	NA	NA	NA	NA
QAR24508.1\|1832001_1832400_+	30S ribosomal protein S8	NA	NA	NA	NA
QAR24509.1\|1832428_1832965_+	50S ribosomal protein L6	NA	NA	NA	NA
QAR24510.1\|1833018_1833375_+	50S ribosomal protein L18	NA	NA	NA	NA
QAR24511.1\|1833397_1833907_+	30S ribosomal protein S5	NA	NA	NA	NA
QAR24512.1\|1833920_1834103_+	50S ribosomal protein L30	NA	NA	NA	NA
QAR24513.1\|1834134_1834569_+	50S ribosomal protein L15	NA	NA	NA	NA
QAR24514.1\|1834569_1835868_+	preprotein translocase subunit SecY	NA	NA	NA	NA
QAR24515.1\|1835889_1836549_+	adenylate kinase	NA	NA	NA	NA
QAR24516.1\|1836690_1836909_+	translation initiation factor IF-1	NA	NA	NA	NA
QAR24517.1\|1836946_1837063_+	50S ribosomal protein L36	NA	NA	NA	NA
QAR24518.1\|1837088_1837454_+	30S ribosomal protein S13	NA	NA	NA	NA
QAR24519.1\|1837485_1837875_+	30S ribosomal protein S11	NA	NA	NA	NA
QAR24520.1\|1837957_1838902_+	DNA-directed RNA polymerase subunit alpha	NA	NA	NA	NA
QAR24521.1\|1838934_1839315_+	50S ribosomal protein L17	NA	NA	NA	NA
QAR24522.1\|1839505_1840342_+	energy-coupling factor transporter ATPase	G9BWD6	Planktothrix_phage	2.2e-19	31.6
QAR24523.1\|1840314_1841181_+	energy-coupling factor transporter ATPase	W6JKT0	Anomala_cuprea_entomopoxvirus	5.3e-16	30.7
QAR24828.1\|1841173_1841977_+	energy-coupling factor transporter transmembrane protein EcfT	NA	NA	NA	NA
QAR24524.1\|1841992_1842769_+\|tRNA	tRNA pseudouridine(38-40) synthase TruA	NA	NA	NA	NA
QAR24525.1\|1842875_1843319_+	50S ribosomal protein L13	NA	NA	NA	NA
QAR24526.1\|1843332_1843728_+	30S ribosomal protein S9	NA	NA	NA	NA
QAR24829.1\|1843902_1844301_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	1.1e-45	62.9
QAR24527.1\|1844300_1845476_+\|transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	1.6e-119	56.7

DBSCAN-SWA_16

1855233 : 1902410

Streptococcus_phage(30.0%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR24535.1\|1855233_1855554_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatC	NA	NA	NA	NA
QAR24536.1\|1857030_1858455_+\|tRNA	Asp-tRNA(Asn)/Glu-tRNA(Gln) amidotransferase subunit GatB	NA	NA	NA	NA
QAR24537.1\|1858467_1859481_+	diacylglycerol kinase	NA	NA	NA	NA
QAR24538.1\|1859590_1860964_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	1.6e-131	52.4
QAR24539.1\|1861195_1861810_+	helix-turn-helix domain-containing protein	NA	NA	NA	NA
QAR24540.1\|1862080_1863052_+	XRE family transcriptional regulator	A0A2I7SDF8	Paenibacillus_phage	4.7e-05	39.3
QAR24830.1\|1863111_1863843_+	sel1 repeat family protein	NA	NA	NA	NA
QAR24541.1\|1863824_1864181_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
QAR24542.1\|1864161_1864590_+	hypothetical protein	NA	NA	NA	NA
QAR24543.1\|1865069_1865729_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	8.1e-41	43.3
QAR24544.1\|1865833_1866385_+	DUF3841 domain-containing protein	NA	NA	NA	NA
QAR24545.1\|1866452_1866740_+\|transposase	transposase	NA	NA	NA	NA
QAR24546.1\|1867580_1868867_-\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	7.8e-48	31.2
QAR24547.1\|1872924_1873695_-	Cof-type HAD-IIB family hydrolase	Q0GXW5	Lactococcus_phage	4.9e-05	24.4
QAR24548.1\|1878239_1878380_-	hypothetical protein	NA	NA	NA	NA
QAR24549.1\|1878390_1878642_-	GlsB/YeaQ/YmgE family stress response membrane protein	NA	NA	NA	NA
QAR24550.1\|1878656_1879199_-	Asp23/Gls24 family envelope stress response protein	NA	NA	NA	NA
QAR24551.1\|1879226_1879412_-	DUF2273 domain-containing protein	NA	NA	NA	NA
QAR24552.1\|1879423_1879984_-	alkaline shock response membrane anchor protein AmaP	NA	NA	NA	NA
QAR24831.1\|1880070_1880898_-\|transposase	IS3 family transposase	A0A1P8CWQ3	Bacillus_phage	1.8e-37	33.6
QAR24832.1\|1880963_1881215_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
QAR24553.1\|1881399_1882521_-	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAR24554.1\|1882997_1883717_-	hypothetical protein	NA	NA	NA	NA
QAR24555.1\|1884575_1885616_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
QAR24556.1\|1886071_1887469_-	Na+/H+ antiporter NhaC	NA	NA	NA	NA
QAR24557.1\|1888715_1889222_+\|tRNA	prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
QAR24558.1\|1889285_1890824_+	copper oxidase	NA	NA	NA	NA
QAR24559.1\|1890836_1891205_+	DUF1304 family protein	NA	NA	NA	NA
QAR24560.1\|1891366_1891810_+	Rrf2 family transcriptional regulator	NA	NA	NA	NA
QAR24561.1\|1892589_1893279_+	class I SAM-dependent methyltransferase	A0A097BYE1	Leuconostoc_phage	1.2e-34	40.7
QAR24562.1\|1893315_1893537_-	hypothetical protein	NA	NA	NA	NA
QAR24563.1\|1893552_1894146_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QAR24564.1\|1894236_1894755_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.7e-31	46.2
QAR24565.1\|1896074_1896629_+	hypothetical protein	NA	NA	NA	NA
QAR24566.1\|1896635_1896950_+	AraC family transcriptional regulator	NA	NA	NA	NA
QAR24567.1\|1897058_1897607_+	MarR family transcriptional regulator	NA	NA	NA	NA
QAR24568.1\|1897829_1899074_+	transcriptional regulator	NA	NA	NA	NA
QAR24569.1\|1899546_1900107_+	hypothetical protein	NA	NA	NA	NA
QAR24570.1\|1900187_1900655_+	DNA starvation/stationary phase protection protein	NA	NA	NA	NA
QAR24833.1\|1900836_1901235_+\|transposase	IS200/IS605 family transposase	A0A286QN76	Streptococcus_phage	9.5e-45	62.1
QAR24571.1\|1901234_1902410_+\|transposase	transposase	A0A0P0ICY9	Lactobacillus_phage	7.5e-114	54.7

DBSCAN-SWA_17

1965301 : 2039378

Enterococcus_phage(21.43%)

protease,tRNA,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAR24626.1\|1965301_1967548_-\|protease	ATP-dependent Clp protease ATP-binding subunit	K4FB40	Cronobacter_phage	8.4e-122	40.5
QAR24627.1\|1967721_1967964_+	hypothetical protein	NA	NA	NA	NA
QAR24628.1\|1968093_1968360_+	phosphocarrier protein HPr	NA	NA	NA	NA
QAR24629.1\|1968361_1970092_+	phosphoenolpyruvate--protein phosphotransferase	NA	NA	NA	NA
QAR24630.1\|1970307_1971525_+	glycosyltransferase family 4 protein	NA	NA	NA	NA
QAR24631.1\|1971517_1972543_+	glycosyltransferase	NA	NA	NA	NA
QAR24632.1\|1972544_1973564_+	flippase-like domain-containing protein	NA	NA	NA	NA
QAR24633.1\|1973884_1974133_+	DUF1797 family protein	NA	NA	NA	NA
QAR24634.1\|1982345_1982681_+	hypothetical protein	NA	NA	NA	NA
QAR24635.1\|1982958_1983780_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
QAR24636.1\|1983802_1984486_+	amino acid ABC transporter permease	NA	NA	NA	NA
QAR24836.1\|1984852_1987069_+	anaerobic ribonucleoside-triphosphate reductase	A0A0C5KKX3	Enterococcus_phage	1.7e-247	58.8
QAR24637.1\|1987013_1987595_+	anaerobic ribonucleoside-triphosphate reductase activating protein	A0A0C5K925	Enterococcus_phage	6.2e-53	59.7
QAR24638.1\|1987603_1988476_+	hypothetical protein	NA	NA	NA	NA
QAR24639.1\|1988627_1989965_+	purine permease	NA	NA	NA	NA
QAR24640.1\|1990629_1991457_+	LysM domain-containing protein	A0A249XZV3	Enterococcus_phage	2.6e-20	71.2
QAR24641.1\|1991763_1992267_+	acyl-CoA thioesterase	NA	NA	NA	NA
QAR24642.1\|1992478_1992910_+	Hsp20/alpha crystallin family protein	NA	NA	NA	NA
QAR24837.1\|1994275_1994518_+	hypothetical protein	NA	NA	NA	NA
QAR24643.1\|1994620_1995238_-	hypothetical protein	NA	NA	NA	NA
QAR24644.1\|1995577_1996945_+	amino acid permease	NA	NA	NA	NA
QAR24645.1\|1997163_1997619_-	transcriptional repressor	NA	NA	NA	NA
QAR24646.1\|1997740_1999174_+	MFS transporter	NA	NA	NA	NA
QAR24838.1\|1999212_1999749_+	DNA-3-methyladenine glycosylase I	NA	NA	NA	NA
QAR24647.1\|1999842_2000574_-	hypothetical protein	NA	NA	NA	NA
QAR24648.1\|2002231_2003029_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.3e-42	38.3
QAR24649.1\|2003031_2004273_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	3.8e-108	55.4
QAR24839.1\|2004531_2005263_-	phosphatase PAP2 family protein	NA	NA	NA	NA
QAR24650.1\|2005600_2008018_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	66.8
QAR24651.1\|2008461_2008725_+	type II toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
QAR24652.1\|2008837_2010484_+	polysaccharide biosynthesis protein	NA	NA	NA	NA
QAR24653.1\|2010906_2011773_-	NAD(P)H-hydrate dehydratase	NA	NA	NA	NA
QAR24654.1\|2011880_2013281_+	dipeptidase PepV	NA	NA	NA	NA
QAR24655.1\|2013360_2013861_+	universal stress protein	NA	NA	NA	NA
QAR24656.1\|2013986_2015375_+	murein L,D-transpeptidase	NA	NA	NA	NA
QAR24657.1\|2015498_2016431_+\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	3.3e-40	37.7
QAR24658.1\|2016534_2017653_+	mannosyl-glycoprotein endo-beta-N-acetylglucosamidase	A0A0K2CP65	Brevibacillus_phage	3.5e-20	43.8
QAR24659.1\|2017752_2018385_-	deoxynucleoside kinase	C1KFI3	Lactobacillus_virus	8.6e-48	46.8
QAR24660.1\|2018514_2019123_+	hypothetical protein	NA	NA	NA	NA
QAR24661.1\|2019196_2020204_+	LacI family transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.5e-25	31.2
QAR24662.1\|2020222_2020906_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QAR24663.1\|2021121_2021493_+	dihydroneopterin aldolase	NA	NA	NA	NA
QAR24664.1\|2021482_2022001_+	2-amino-4-hydroxy-6- hydroxymethyldihydropteridine diphosphokinase	NA	NA	NA	NA
QAR24665.1\|2021982_2022555_+	GTP cyclohydrolase I FolE	A0A2I7S8W4	Vibrio_phage	8.9e-36	44.0
QAR24666.1\|2022551_2023832_+	bifunctional folylpolyglutamate synthase/dihydrofolate synthase	NA	NA	NA	NA
QAR24667.1\|2023812_2024403_+	non-canonical purine NTP pyrophosphatase	NA	NA	NA	NA
QAR24668.1\|2024386_2025520_+	dihydropteroate synthase	NA	NA	NA	NA
QAR24669.1\|2025520_2026003_-	hypothetical protein	NA	NA	NA	NA
QAR24670.1\|2026001_2026361_+	hypothetical protein	NA	NA	NA	NA
QAR24671.1\|2026779_2028468_+\|tRNA	arginine--tRNA ligase	A0A2I2L3K1	Orpheovirus	1.5e-67	31.7
QAR24672.1\|2029442_2030861_+	MATE family efflux transporter	NA	NA	NA	NA
QAR24673.1\|2031981_2032887_+	DUF2382 domain-containing protein	NA	NA	NA	NA
QAR24674.1\|2034687_2035974_+\|transposase	ISL3 family transposase	A0A1S5SBP9	Streptococcus_phage	7.8e-48	31.2
QAR24675.1\|2036551_2037613_+	hypothetical protein	NA	NA	NA	NA
QAR24676.1\|2038626_2038914_-\|transposase	transposase	NA	NA	NA	NA
QAR24677.1\|2039003_2039378_-\|transposase	IS110 family transposase	NA	NA	NA	NA

DBSCAN-SWA_18

2101269 : 2116923

Lactobacillus_phage(66.67%)

integrase,transposase

attL 2100912:2100926|attR 2115771:2115785

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2100912:2100926	attL	NA	NA	NA	NA
QAR24742.1\|2101269_2102358_-\|integrase	site-specific integrase	E9LUK6	Lactobacillus_phage	2.0e-201	98.9
QAR24743.1\|2102455_2103256_-	DUF1828 domain-containing protein	Q6SEA4	Lactobacillus_prophage	3.2e-68	48.7
QAR24744.1\|2103257_2103506_-	hypothetical protein	Q6SEA3	Lactobacillus_prophage	3.4e-16	42.3
QAR24745.1\|2103641_2104711_-\|transposase	IS3-like element IS1163 family transposase	A0A1P8CWQ3	Bacillus_phage	6.3e-35	33.2
QAR24746.1\|2104896_2105427_-	hypothetical protein	Q6SEG3	Lactobacillus_prophage	1.3e-17	62.3
QAR24841.1\|2105601_2106558_-	DUF4041 domain-containing protein	Q708S0	Streptococcus_phage	6.0e-45	49.7
QAR24747.1\|2106982_2107372_-	ImmA/IrrE family metallo-endopeptidase	A0A1B1IME3	Lactococcus_phage	1.2e-07	31.0
QAR24842.1\|2107382_2107700_-	XRE family transcriptional regulator	E9LUL4	Lactobacillus_phage	5.1e-09	39.4
QAR24748.1\|2107902_2108100_+	XRE family transcriptional regulator	A0A0A1ELJ1	Lactobacillus_phage	3.4e-19	73.8
QAR24749.1\|2108148_2108916_+	phage regulatory protein	E9LUL6	Lactobacillus_phage	5.8e-123	86.7
QAR24750.1\|2109028_2109298_-	hypothetical protein	E9LUL8	Lactobacillus_phage	8.4e-45	100.0
QAR24751.1\|2109357_2109684_+	hypothetical protein	E9LUL9	Lactobacillus_phage	4.2e-59	100.0
QAR24752.1\|2110043_2110253_+	hypothetical protein	E9LUM2	Lactobacillus_phage	3.1e-31	98.6
QAR24753.1\|2110255_2111248_+	recombinase RecT	E9LUM3	Lactobacillus_phage	6.1e-141	83.1
QAR24754.1\|2111240_2112089_+	hypothetical protein	E9LUM4	Lactobacillus_phage	1.9e-167	97.9
QAR24755.1\|2112089_2112524_+	single-stranded DNA-binding protein	E9LUM5	Lactobacillus_phage	2.3e-76	98.6
QAR24756.1\|2112538_2113288_+	hypothetical protein	E9LUM6	Lactobacillus_phage	1.0e-140	99.2
QAR24757.1\|2113296_2114115_+	ATP-binding protein	E9LUM7	Lactobacillus_phage	8.0e-155	99.6
QAR24758.1\|2114118_2114310_+	hypothetical protein	D2KRE6	Lactobacillus_phage	4.6e-21	92.0
QAR24759.1\|2114275_2114464_+	hypothetical protein	NA	NA	NA	NA
QAR24760.1\|2114460_2114760_-	hypothetical protein	A0A1W6JPU7	Staphylococcus_phage	5.9e-23	54.2
QAR24843.1\|2114880_2115081_+	XRE family transcriptional regulator	A0A0P0IJY1	Lactobacillus_phage	1.2e-08	48.5
QAR24761.1\|2115073_2115388_+	hypothetical protein	A0A0A7NTZ5	Lactobacillus_phage	5.7e-37	81.8
QAR24762.1\|2115587_2115854_+	hypothetical protein	NA	NA	NA	NA
2115771:2115785	attR	NA	NA	NA	NA
QAR24763.1\|2115931_2116381_+	hypothetical protein	A0A0A1ERD2	Lactobacillus_phage	2.0e-46	63.9
QAR24764.1\|2116449_2116923_+	hypothetical protein	Q8SDG5	Lactococcus_phage	5.5e-07	30.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP035055

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection