CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034358	Clostridium septicum strain VAT12 chromosome, complete genome	6 crisprs	DEDDh,csx1,cas3,csa3,WYL,c2c10_CAS-V-U3,cas2,cas1,cas5,cas7,cas8b2,cas6	0	7	7	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034358_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034358_1

258845-258945

Orphan

Consensus_repeat	Method
AAGCGACTCGTTTATCTTATCACTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034358_1

>merge|CP034358|1|258845-258945|CRISPRCasFinder
AAGCGACTCGTTTATCTTATCACTCTTAAAAATTCTTGTCAACAACTTTTTTAAAGTCATTTTTCAAATCTACTAAAAGCGACTCGTTTATCTTATCATCA

>CP034358|1|1|258845-258945|CRISPRCasFinder
AAGCGACTCGTTTATCTTATCACTC	TTAAAAATTCTTGTCAACAACTTTTTTAAAGTCATTTTTCAAATCTACTAA
AAGCGACTCGTTTATCTTATCATCA

Protein	Signature genes	Signature genes Name	Protein_function
CP034358.1\|QAS59548.1\|268675_269041_-\|GtrA-family-protein	unknown	unknown	gnl\|CDD\|377229
CP034358.1\|QAS59539.1\|259263_259941_+\|uracil-DNA-glycosylase	unknown	unknown	gnl\|CDD\|235376
CP034358.1\|QAS59547.1\|267419_268355_-\|glycosyltransferase	unknown	unknown	gnl\|CDD\|133030
CP034358.1\|QAS59537.1\|252019_252766_-\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|234605
CP034358.1\|QAS59540.1\|260036_260246_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223014
CP034358.1\|QAS59531.1\|245488_246334_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	unknown	unknown	gnl\|CDD\|223390
CP034358.1\|QAS59536.1\|251292_251934_+\|HAD-family-phosphatase	unknown	unknown	gnl\|CDD\|223710
CP034358.1\|QAS59532.1\|246336_247086_-\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	unknown	unknown	gnl\|CDD\|226608
CP034358.1\|QAS59530.1\|245167_245407_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|131898
CP034358.1\|QAS59546.1\|263654_265730_-\|elongation-factor-G	unknown	unknown	gnl\|CDD\|237186
CP034358.1\|QAS59545.1\|263325_263562_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS59542.1\|261080_261509_+\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS59543.1\|261588_262524_-\|CPBP-family-intramembrane-metalloprotease	unknown	unknown	gnl\|CDD\|376806
CP034358.1\|QAS59535.1\|249811_251161_+\|iron-hydrogenase	unknown	unknown	gnl\|CDD\|274983
CP034358.1\|QAS59538.1\|252933_253392_+\|thioredoxin-dependent-thiol-peroxidase	unknown	unknown	gnl\|CDD\|224146
CP034358.1\|QAS59534.1\|248841_249147_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS59529.1\|244046_244637_-\|DUF1836-domain-containing-protein	unknown	unknown	gnl\|CDD\|378076
CP034358.1\|QAS59541.1\|260737_260947_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS59544.1\|262713_263202_-\|nicotinamide-nucleotide-amidohydrolase-family-protein	unknown	unknown	gnl\|CDD\|234789
CP034358.1\|QAS59533.1\|247208_248465_-\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|223862

Protein	Function_ID	Function_description	E-value
CP034358.1\|QAS59539.1\|259263_259941_+\|uracil-DNA-glycosylase	gnl\|CDD\|235376	PRK05254, PRK05254, uracil-DNA glycosylase; Provisional.	5.05761e-145
CP034358.1\|QAS59547.1\|267419_268355_-\|glycosyltransferase	gnl\|CDD\|133030	cd04187, DPM1_like_bac, Bacterial DPM1_like enzymes are related to eukaryotic DPM1. A family of bacterial enzymes related to eukaryotic DPM1; Although the mechanism of eukaryotic enzyme is well studied, the mechanism of the bacterial enzymes is not well understood. The eukaryotic DPM1 is the catalytic subunit of eukaryotic Dolichol-phosphate mannose (DPM) synthase. DPM synthase is required for synthesis of the glycosylphosphatidylinositol (GPI) anchor, N-glycan precursor, protein O-mannose, and C-mannose. The enzyme has three subunits, DPM1, DPM2 and DPM3. DPM is synthesized from dolichol phosphate and GDP-Man on the cytosolic surface of the ER membrane by DPM synthase and then is flipped onto the luminal side and used as a donor substrate. This protein family belongs to Glycosyltransferase 2 superfamily.	3.13843e-96
CP034358.1\|QAS59537.1\|252019_252766_-\|peptidylprolyl-isomerase	gnl\|CDD\|234605	PRK00059, prsA, peptidylprolyl isomerase; Provisional.	3.67637e-34
CP034358.1\|QAS59540.1\|260036_260246_-\|hypothetical-protein	gnl\|CDD\|223014	PHA03231, PHA03231, glycoprotein BALF4; Provisional.	0.00361174
CP034358.1\|QAS59531.1\|245488_246334_-\|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase	gnl\|CDD\|223390	COG0313, COG0313, Predicted methyltransferases [General function prediction only].	7.15901e-129
CP034358.1\|QAS59536.1\|251292_251934_+\|HAD-family-phosphatase	gnl\|CDD\|223710	COG0637, COG0637, Predicted phosphatase/phosphohexomutase [General function prediction only].	8.93455e-45
CP034358.1\|QAS59532.1\|246336_247086_-\|tRNA1(Val)-(adenine(37)-N6)-methyltransferase	gnl\|CDD\|226608	COG4123, COG4123, Predicted O-methyltransferase [General function prediction only].	1.17724e-89
CP034358.1\|QAS59530.1\|245167_245407_+\|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein	gnl\|CDD\|131898	TIGR02851, stage_V_sporulation_protein_T, stage V sporulation protein T. Members of this protein family are the stage V sporulation protein T (SpoVT), a protein of the sporulation/germination program in Bacillus subtilis and related species. The amino-terminal 50 amino acids are nearly perfectly conserved across all endospore-forming bacteria. SpoVT is a DNA-binding transcriptional regulator related to AbrB (See pfam04014). [Regulatory functions, DNA interactions, Cellular processes, Sporulation and germination].	8.33047e-17
CP034358.1\|QAS59548.1\|268675_269041_-\|GtrA-family-protein	gnl\|CDD\|377229	pfam04138, GtrA, GtrA-like protein. Members of this family are predicted to be integral membrane proteins with three or four transmembrane spans. They are involved in the synthesis of cell surface polysaccharides. The GtrA family are a subset of this family. GtrA is predicted to be an integral membrane protein with 4 transmembrane spans. It is involved is in O antigen modification by Shigella flexneri bacteriophage X (SfX), but does not determine the specificity of glucosylation. Its function remains unknown, but it may play a role in translocation of undecaprenyl phosphate linked glucose (UndP-Glc) across the cytoplasmic membrane. Another member of this family is a DTDP-glucose-4-keto-6-deoxy-D-glucose reductase, which catalyzes the conversion of dTDP-4-keto-6-deoxy-D-glucose to dTDP-D-fucose, which is involved in the biosynthesis of the serotype-specific polysaccharide antigen of Actinobacillus actinomycetemcomitans Y4 (serotype b). This family also includes the teichoic acid glycosylation protein, GtcA, which is a serotype-specific protein in some Listeria innocua and monocytogenes strains. Its exact function is not known, but it is essential for decoration of cell wall teichoic acids with glucose and galactose.	1.5592e-23
CP034358.1\|QAS59543.1\|261588_262524_-\|CPBP-family-intramembrane-metalloprotease	gnl\|CDD\|376806	pfam02517, Abi, CAAX protease self-immunity. Members of this family are probably proteases (after a isoprenyl group is attached to the Cys residue in the C-terminal CAAX motif of a protein to attach it to the membrane, the AAX tripeptide being removed by one of the CAAX prenyl proteases). The family contains the CAAX prenyl protease. The proteins contain a highly conserved Glu-Glu motif at the amino end of the alignment. The alignment also contains two histidine residues that may be involved in zinc binding. While they are involved in membrane anchoring of proteins in eukaryotes, little is known about their function in prokaryotes. In some known bacteriocin loci, Abi genes have been found downstream of bacteriocin structural genes where they are probably involved in self-immunity. Investigation of the bacteriocin-like loci in the Gram positive bacteria locus from Lactobacillus sakei 23K confirmed that the bacteriocin-like genes (sak23Kalphabeta) exhibited antimicrobial activity when expressed in a heterologous host and that the associated Abi gene (sak23Ki) conferred immunity against the cognate bacteriocin. Interestingly, the immunity genes from three similar systems conferred a high degree of cross-immunity against each other's bacteriocins, suggesting the recognition of a common receptor. Site-directed mutagenesis demonstrated that the conserved motifs constituting the putative proteolytic active site of the Abi proteins are essential for the immunity function of Sak23Ki - thus a new concept in self-immunity.	8.61774e-10
CP034358.1\|QAS59535.1\|249811_251161_+\|iron-hydrogenase	gnl\|CDD\|274983	TIGR04105, hypothetical_protein, [FeFe] hydrogenase, group B1/B3. See for descriptions of different groups.	3.02296e-112
CP034358.1\|QAS59538.1\|252933_253392_+\|thioredoxin-dependent-thiol-peroxidase	gnl\|CDD\|224146	COG1225, Bcp, Peroxiredoxin [Posttranslational modification, protein turnover, chaperones].	2.19762e-82
CP034358.1\|QAS59529.1\|244046_244637_-\|DUF1836-domain-containing-protein	gnl\|CDD\|378076	pfam08876, DUF1836, Domain of unknown function (DUF1836). This family of proteins are functionally uncharacterized.	1.32733e-29
CP034358.1\|QAS59546.1\|263654_265730_-\|elongation-factor-G	gnl\|CDD\|237186	PRK12740, PRK12740, elongation factor G-like protein EF-G2.	0
CP034358.1\|QAS59544.1\|262713_263202_-\|nicotinamide-nucleotide-amidohydrolase-family-protein	gnl\|CDD\|234789	PRK00549, PRK00549, competence damage-inducible protein A; Provisional.	4.08257e-81
CP034358.1\|QAS59533.1\|247208_248465_-\|glycoside-hydrolase	gnl\|CDD\|223862	COG0791, Spr, Cell wall-associated hydrolases (invasion-associated proteins) [Cell envelope biogenesis, outer membrane].	6.01427e-34

>CP034358.1|QAS59538.1|252933_253392_+|thioredoxin-dependent-thiol-peroxidase
MIELGKLAPDFTLIGSDGNEHSLSDYRGKKVILYFYPKDNTPGCSTEACDFRDNNNEINNLNAIVIGISKDSLSSHNKFIEKFHLPFILLSDEEKAVCALYDVIKEKNMYGKKVLGIERSTFIINEEGILIKEFRKVKVKGHVEAVIEELRL
>CP034358.1|QAS59537.1|252019_252766_-|peptidylprolyl-isomerase
MQDKILATVAGKEVKMSDLQSLVMRYPEDKRAYFQTEEAMKQLLEQVIAFELMANLGEELNLNTTEEFKANLKNVERELLTQVTMNKVLSEITVTDKEALDFYNENKNMFVEQPTVSAKHILVDSKETCENVRKEIESGEVTFEEAASKYSSCPSKEQGGSLGAFGRGMMVPEFEDAAFKLEIGVVSEPVQTQFGYHLIKVEDRSEEKTVDFENVKSQIVNKLIQERQQRKYLDVVKELEAKYGVTRN
>CP034358.1|QAS59536.1|251292_251934_+|HAD-family-phosphatase
MQNIKAAIFDLDGTLVDSMWVWEQIDIDYLSAIGHKVPNNLKDEITHLSFNETALYFKNRFKLENSVEEIINSWNTMALDYYSNKIKLKKGVSEYLNKLKDNNIKIALATSNSTPLLEATLRNNGIYHYFDAITTTDEVKRNKAYPDVYLLSANKLNISPKDCVVFEDIVQAINGAKLAGMKVIAVYDKSSENQKEELMKLSDKYINDYTELI
>CP034358.1|QAS59535.1|249811_251161_+|iron-hydrogenase
MNKEYTDWFNELVKSYYDGNFDETIKKILSNSNKSPEETFSVISSLCGCNIKYDENYIYNLKKAITNYNVHQKIVEKLQNCFGKCSENIDEIPKCQLACPFDAIIDNKENNTKVIDNERCIDCGLCIDACDNGNFIDKVEFLPIMELIKNNTKVIAAVAPAISGQWGPNTTMDQMRAALINLGFTDMIEVAFAADMLTIKEAVEFNKHVKSSSDLMITSCCCPMWVGILKKVYKSLVKDLSPSVSPMVAAGRVIKKLNKDAKVVFIGPCIAKKAEAKEKDLSDAIDFVLTFQELKEIFNALDICPSSLQGVPSIEYASRGGRLYARTGGVSIAISEAVEELYPEKHKLFKAVQAEGVKNCKEVLAKAQEGSLDANFIEGMGCIGGCVGGPKILVSKEDGKKAVDDFAYNSSIKIATHSNILDNILNDLNITSLDDFKSPEKIHILERDF
>CP034358.1|QAS59534.1|248841_249147_-|hypothetical-protein
MRGSTIVMIMASIGFILIGLVILSSKKIKSLMSDVKIYTDTKKFISFNGMFNIGIGVIGLLLGSLDYFYAELSKYIVIVFIIIMVTASLIQNKLSKKYKKF
>CP034358.1|QAS59533.1|247208_248465_-|glycoside-hydrolase
MRKKILSAVIAGVLVLTSGVPAFATPNQEVTENQKKYEEITNKINGIQGEIYKLNMEIDPLAEKVENNKKEMQIIKEEIQNTTKEIETSKIEMKEKEEVLGKRLRELYKSGGQSSYLSILFSAESFSDFISKLDSTTRLVNIDKKVVKDILDKQEKMNAKVASLEEKNSEIVKVNEETEKALVEFESKRKEQEVLINSAKEEQSKFDEEFLSVAERKLVEPQLAVLNSSSSVDEIQSAIEQLRSIRDNQLKSPIVVEEIDEAIEAAKIKVDDLKAQAEAQAQAQAQIQASKPSTPNRGDNPTVSGSASGIVGYAYGLLGRPYVWGATGPDSFDCSGFTSYVYRNAAGIEITRTTYSQLGQGRAVSQGELEPGDLVFTYGGDHVGIYVGGGSYIHAPQPGDTVKVSPITSFHAARRIIE
>CP034358.1|QAS59532.1|246336_247086_-|tRNA1(Val)-(adenine(37)-N6)-methyltransferase
MEERVQLLEDESIDDLQLKNLYLIQKKNAFRFGVDAVLLSDFANVKTKHRVIDICTGTGIVPFLIYGKYSPKSIVGLEIQEEMVEMAKRSAKYNNLEEIITFNQGDLKNKKLLDSLGKFDVLTVNPPYKLNNAGILNPNDKLAIARHEIMCTLEDVIIASRRLLKDNGRMYIVHRPERLIDIFELMRKHKIEPKRVKMVQPNAKKAPNIVLVEGQRDGGAFLKWEAPLCVYNEDGTYTKELNEIYGREG
>CP034358.1|QAS59531.1|245488_246334_-|16S-rRNA-(cytidine(1402)-2'-O)-methyltransferase
MAQGKLYLVPTPIGNLKDITLRALEVLENADIIAAEDTRQSLKLLNHFNIKKSLFSYHQHNEQGKSEDIIAKLEDGLNVALVTDAGTPGISDPGSVIVTKCIERGIEFEVLPGATAITTALVYSGIDTTKFVFRGFLPRENKERKPVIEELLNVKDTLIFYEAPHRLLDTLGYLKENLGDRKIAICRELTKLHEEIYRGTISEGIKYFVENRPRGEFVLVLEGKSEEEIKAEKEALWSDLTIEEHILKFMELGIDKKEAIKKVAKERGVPKKEIYKYSTNM
>CP034358.1|QAS59530.1|245167_245407_+|AbrB/MazE/SpoVT-family-DNA-binding-domain-containing-protein
MKSTGVVRRVDELGRIVIPIELRRTLDIAEKDALEIYVDGEQIILKKYEPACIFCGDARDVVNYKGKNICEKCLTELKK
>CP034358.1|QAS59529.1|244046_244637_-|DUF1836-domain-containing-protein
MVKKIDTSYITDMAEEMSTNNMVSYDDLPKYDLFLSQVIDFLNDKFTEDKYTNNIVQNYIKSEVITKPEDGKKRGYTKIHLVQLVLLSYMRPVLTTEEIKKVFSLAFNEINDRSDDIISWERAYKIFAETQSESFKEFLATSAIDEEKLNEIISELDLNEKDENSIRTFVIVMSLIAQASAIKKLVQKIVNEYHSE
>CP034358.1|QAS59539.1|259263_259941_+|uracil-DNA-glycosylase
MKKILDNDWQELLESEFQKEYYQDLRKFLIYEYKTKTIYPNMYDIFNALKFTSYKDVKVVIIGQDPYHGPNQAHGLSFSVNKGIKTPPSLLNIYKELNSDLGCYIPNNGYLKKWADQGILLINTVLTVRAHEANSHKNMGWEIFTDKIISLLNGKDDPIVFILWGNPAIKKSLLITNKNHFILKSPHPSPLSASRGFFGSRPFSKTNEILKFIGKSPIDWQIENI
>CP034358.1|QAS59540.1|260036_260246_-|hypothetical-protein
MLEKLSLSDEEYDYLAKCIAIGVGIGTFVGSLIGNVILGFAAGGVIGIVVSGIRFLSHKLKGMHRKEII
>CP034358.1|QAS59541.1|260737_260947_-|hypothetical-protein
MIDLFSLSSDQLIVVAAFIAADIAQSLTSEEQEIVAWLFEAIGQNLSVFGAVEALRQKNNKNDDSGIVK
>CP034358.1|QAS59542.1|261080_261509_+|hypothetical-protein
MKYLLFIALISGLVGTYFYYDHKLALTRKQLMIASKRNNKLKSRATPKKNLDIKINFSNPTSKIGLTNINTNLYLAPINSSPIIRTIKIRMEVQILDAAETNSQTWYYVNLPIDSNINCRGWLNSTDFSILYSDSTNITKTT
>CP034358.1|QAS59543.1|261588_262524_-|CPBP-family-intramembrane-metalloprotease
MKKVFRANLYFLIIILLEIFMPKILVPIYKEIGVTDIRIALAMNHILLFLVPATVYIILTKSSVKNTLKLNKLYFKDILLIILLAFLCQPIMSFFSIITAFFFNNEIGAFITQINSTPYLILLSLVALLPAITEECTIRGVVLSGYENKNMYLAAMVTGLFFGIFHLDPQQFLYTTVLGFILALVVRITNSIFASAIIHFIINGTSVTASKLLNSIPQSTTILEGNMDLSLRALPINEKMIMFVVYGVIALIFATFVYMIIKKLEELNIRRGVLTEERKEIIKDKDSIINIPFILIIVVYIAFMFYKYINI
>CP034358.1|QAS59544.1|262713_263202_-|nicotinamide-nucleotide-amidohydrolase-family-protein
MSNNGNDRSIEYIVGKILCKNKLTISTAESCTGGLVAGKLISYPGISEVFKEGVVTYSNESKMKRLGVKEETLRSFGAVSEETAREMAEGIAREAKTDVSVVTTGIAGPGGGTKEKPVGLVYIGVYVKGKTQVKKFNFKGDRQQVREEAVLSALNMLKHNLE
>CP034358.1|QAS59545.1|263325_263562_-|hypothetical-protein
MPDYKMDIQGNLNLSEYSNIFDYMGVVDMNDSFTITLSNTSQQDINIITSMLRDGDFLIKEQGVNGNGEYYINANKLK
>CP034358.1|QAS59546.1|263654_265730_-|elongation-factor-G
MKDYTINNLRNVGLIGHSGSGKTSLAEALLFHSGNSDRLGKVEDGNTIMDFDQEERRRRISLSVSLASIEFKNTKINLVDIPGYFDFYGEVIQGMRAVDVATIVVCGASGVQVGTEKAWDYCDKIKLPRTFFVNKLDRENSSFDKVLGELKEKFGISVVPIQYPIGKEDDFKGVINIISKRARIYNEKTHKVEITDIPKDLLDKVEECKQMIMEAVAETDEELLEKYFSEGELSDEEIYKGLIKGCADGDIAPVMCGSATKVIGIDSVLDDIVECFPSPEYAIPQKAINLQSDEEVFISLSEDNPFSALVFKTIADPFVGKISIFRVITGKLSNEVSVINSNNDKVEKLSNVFFLKGKNQVQTNKVMAGDIAAVAKLQYTGTGDTLCDSNNKIIYDKMNFPKPIISMSVMPKSKGDEDKISYSLQKLLEEDPSFTMHRDTENAETIISGLGETHLEVIASKLKNKFGADVILDTPKIPYRETIKGFSEVQGKHKKQSGGHGQYGDVKIRFERRDDGGEELEFIDKVVGGAVPRNFIPAVEKGLKDCIEKGILAGYPVIGLRATLYDGSYHPVDSSEMAFKMATSIAYKKGLEIAKPILLEPIMHVEILVPDEYMGDVIGDINKKRGRVIGMELEGKLQKIIGEIPLAEMSKYATDLRSMTQARGTFTSILQRYDEVPEIESKRIIEEVKKM
>CP034358.1|QAS59547.1|267419_268355_-|glycosyltransferase
MSKMISIVVPMYFEEKVVEECYRRLTEVMSNIKYEHELVFVNDGSTDGTLPMLKDIASKDSSVKIIDFARNFGHQIAVTAGIKEAKGDAVIVIDADLQDPPELILEMVDKWENGYEVVYAKRKKRKGETFFKLMTAKYFYKFLQIMSDVDIPRDTGDYRLMDRKVVDVFNSMTEKNRFVRGMVSWLGFNQTYVEFVRAERFAGETKYPLKKMLKLAEDGIVSFSHKPMKIIGGFGVIFLVIFFLQILIAIYNSIFRFGVSDIFCLATYVSLVAGILLISLGVLGSYIARIFDESNGRPLYIIREKVNFDDK
>CP034358.1|QAS59548.1|268675_269041_-|GtrA-family-protein
MEKFLKFGLVGVINTLITMIVFNGLKFIGVNILVANTIGYICGMINSYLWNNRWVFKSNTKDVSTISKFIIVNVVAMLINNGILFVFVNGVGINSTISQALAIVITTVINFVGNKIWTFNK

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Crispr_ID: CP034358_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034358_2

564931-565092

Orphan

Consensus_repeat	Method
AAAACTATGCACTACTATGCACA	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP034358_2

>merge|CP034358|2|564931-565092|CRISPRCasFinder
AAAACTATGCACTACTATGCACACGCCAGTAATATCAAGGCTTTGCACAGTTTTTTTTATCAAAATAACTATGCACTACTATGCACAACCCAGTGATATCAATGGTTTATGTGTTATAAATACGTTGGATTCCACATTATCAACTATGCACTACTATGCACT

>CP034358|2|2|564931-565092|CRISPRCasFinder
AAAACTATGCACTACTATGCACA	CGCCAGTAATATCAAGGCTTTGCACAGTTTTTTTTATCAAA
ATAACTATGCACTACTATGCACA	ACCCAGTGATATCAATGGTTTATGTGTTATAAATACGTTGGATTCCACATTA
TCAACTATGCACTACTATGCACT

Protein	Signature genes	Signature genes Name	Protein_function
CP034358.1\|QAS59744.1\|546120_549564_+\|helicase-exonuclease-AddAB-subunit-AddB	unknown	unknown	gnl\|CDD\|213736
CP034358.1\|QAS59747.1\|556007_556754_-\|MurR/RpiR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|224651
CP034358.1\|QAS59760.1\|577039_578050_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP034358.1\|QAS59757.1\|574904_575189_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS59746.1\|553327_553651_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274974
CP034358.1\|QAS59743.1\|545559_546078_+\|N-acetyltransferase	unknown	unknown	gnl\|CDD\|224584
CP034358.1\|QAS59758.1\|575275_575419_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|163261
CP034358.1\|QAS59750.1\|559911_560691_+\|DUF1189-domain-containing-protein	unknown	unknown	gnl\|CDD\|377690
CP034358.1\|QAS59748.1\|556989_558348_-\|CCA-tRNA-nucleotidyltransferase	unknown	unknown	gnl\|CDD\|223690
CP034358.1\|QAS62153.1\|553868_555563_-\|glycosyl-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|185693
CP034358.1\|QAS59759.1\|575964_576906_-\|iron-siderophore-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238566
CP034358.1\|QAS59754.1\|569579_569765_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|273690
CP034358.1\|QAS59749.1\|558541_559768_-\|murein-L,D-transpeptidase	unknown	unknown	gnl\|CDD\|341130
CP034358.1\|QAS59751.1\|562498_563383_+\|HAMP-domain-containing-histidine-kinase	unknown	unknown	gnl\|CDD\|223715
CP034358.1\|QAS59745.1\|549566_553301_+\|helicase-exonuclease-AddAB-subunit-AddA	unknown	unknown	gnl\|CDD\|274299
CP034358.1\|QAS59753.1\|569088_569277_+\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS59755.1\|569858_570422_+\|phage-major-capsid-protein	unknown	unknown	gnl\|CDD\|377449
CP034358.1\|QAS59752.1\|565299_565530_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP034358.1\|QAS62154.1\|565783_565930_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|378935
CP034358.1\|QAS59756.1\|570483_570738_+\|terminase-small-subunit	unknown	unknown	gnl\|CDD\|377071

Protein	Function_ID	Function_description	E-value
CP034358.1\|QAS59744.1\|546120_549564_+\|helicase-exonuclease-AddAB-subunit-AddB	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
CP034358.1\|QAS59747.1\|556007_556754_-\|MurR/RpiR-family-transcriptional-regulator	gnl\|CDD\|224651	COG1737, RpiR, Transcriptional regulators [Transcription].	5.67617e-54
CP034358.1\|QAS59760.1\|577039_578050_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	8.86802e-87
CP034358.1\|QAS59746.1\|553327_553651_+\|hypothetical-protein	gnl\|CDD\|274974	TIGR04091, hypothetical_protein, D-alanyl-lipoteichoic acid biosynthesis protein DltB. Members of this protein family are DltB, part of a four-gene operon for D-alanyl-lipoteichoic acid biosynthesis that is present in the vast majority of low-GC Gram-positive organisms. This protein may be involved in transport of D-alanine across the plasma membrane. [Cell envelope, Biosynthesis and degradation of murein sacculus and peptidoglycan].	0.000584943
CP034358.1\|QAS59743.1\|545559_546078_+\|N-acetyltransferase	gnl\|CDD\|224584	COG1670, RimL, Acetyltransferases, including N-acetylases of ribosomal proteins [Translation, ribosomal structure and biogenesis].	1.10546e-28
CP034358.1\|QAS59758.1\|575275_575419_-\|hypothetical-protein	gnl\|CDD\|163261	TIGR03433, padR_acidobact, transcriptional regulator, Acidobacterial, PadR-family. Members of this protein family are putative transcriptional regulators of the PadR family, as found in species of the Acidobacteria. This family of proteins has expanded greatly in this lineage, and where it regularly is found in the vicinity of a putative transporter protein [Regulatory functions, DNA interactions].	0.000349677
CP034358.1\|QAS59750.1\|559911_560691_+\|DUF1189-domain-containing-protein	gnl\|CDD\|377690	pfam06691, DUF1189, Protein of unknown function (DUF1189). This family consists of several hypothetical bacterial proteins of around 260 residues in length. The function of this family is unknown.	6.09791e-24
CP034358.1\|QAS59748.1\|556989_558348_-\|CCA-tRNA-nucleotidyltransferase	gnl\|CDD\|223690	COG0617, PcnB, tRNA nucleotidyltransferase/poly(A) polymerase [Translation, ribosomal structure and biogenesis].	2.44871e-104
CP034358.1\|QAS62153.1\|553868_555563_-\|glycosyl-hydrolase-family-protein	gnl\|CDD\|185693	cd08023, GH16_laminarinase_like, Laminarinase, member of the glycosyl hydrolase family 16. Laminarinase, also known as glucan endo-1,3-beta-D-glucosidase, is a glycosyl hydrolase family 16 member that hydrolyzes 1,3-beta-D-glucosidic linkages in 1,3-beta-D-glucans such as laminarins, curdlans, paramylons, and pachymans, with very limited action on mixed-link (1,3-1,4-)-beta-D-glucans.	1.194e-70
CP034358.1\|QAS59759.1\|575964_576906_-\|iron-siderophore-ABC-transporter-substrate-binding-protein	gnl\|CDD\|238566	cd01146, FhuD, Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.	1.23085e-91
CP034358.1\|QAS59754.1\|569579_569765_+\|hypothetical-protein	gnl\|CDD\|273690	TIGR01554, prophage_Lp3_protein_18, phage major capsid protein, HK97 family. This model family represents the major capsid protein component of the heads (capsids) of bacteriophage HK97, phi-105, P27, and related phage. This model represents one of several analogous families lacking detectable sequence similarity. The gene encoding this component is typically located in an operon encoding the small and large terminase subunits, the portal protein and the prohead or maturation protease. [Mobile and extrachromosomal element functions, Prophage functions].	8.0572e-08
CP034358.1\|QAS59749.1\|558541_559768_-\|murein-L,D-transpeptidase	gnl\|CDD\|341130	cd16913, YkuD_like, L,D-transpeptidases/carboxypeptidases similar to Bacillus YkuD. Members of the YkuD-like family of proteins are found in a range of bacteria. The best studied member Bacillus YkuD has been shown to act as an L,D-transpeptidase that gives rise to an alternative pathway for peptidoglycan cross-linking. Another member Helicobacter pylori Csd6 functions as an L,D-carboxypeptidase and regulates helical cell shape and motility. The conserved region contains a conserved histidine and cysteine, with the cysteine thought to be an active site residue.	1.35853e-24
CP034358.1\|QAS59751.1\|562498_563383_+\|HAMP-domain-containing-histidine-kinase	gnl\|CDD\|223715	COG0642, BaeS, Signal transduction histidine kinase [Signal transduction mechanisms].	2.83947e-42
CP034358.1\|QAS59745.1\|549566_553301_+\|helicase-exonuclease-AddAB-subunit-AddA	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
CP034358.1\|QAS59755.1\|569858_570422_+\|phage-major-capsid-protein	gnl\|CDD\|377449	pfam05065, Phage_capsid, Phage capsid family. Family of bacteriophage hypothetical proteins and capsid proteins.	4.39689e-18
CP034358.1\|QAS59752.1\|565299_565530_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.00048e-14
CP034358.1\|QAS62154.1\|565783_565930_+\|DNA-binding-protein	gnl\|CDD\|378935	pfam12728, HTH_17, Helix-turn-helix domain. This domain is a DNA-binding helix-turn-helix domain.	1.60831e-08
CP034358.1\|QAS59756.1\|570483_570738_+\|terminase-small-subunit	gnl\|CDD\|377071	pfam03592, Terminase_2, Terminase small subunit. Packaging of double-stranded viral DNA concatemers requires interaction of the prohead with virus DNA. This process is mediated by a phage-encoded DNA recognition and terminase protein. The terminase enzymes described so far, which are hetero-oligomers composed of a small and a large subunit, do not have a significant level of sequence homology. The small terminase subunit is thought to form a nucleoprotein structure that helps to position the terminase large subunit at the packaging initiation site.	2.60525e-16

>CP034358.1|QAS59751.1|562498_563383_+|HAMP-domain-containing-histidine-kinase
MGEKGLFLKYEDILKDSISNTSYNKIIELLAELQEKNTKQEELLLNISHDMRAHLNVILSIMQCIECGNVDIEDKKAIEYMKIVKRNSLKMLKLINNLIDTTRLENNYYVLNKKNIDIVSMIEGTISCIDRYAKQKNIQLIFDTNEEECIIAADPEVIDRIVMNLISNAIKFSSEDKNVYIDLYISEKEVEIIVTDEGVGISKEDQKKIFDRFYQISKKKSNENSGSGIGLDLVNYLVKTHDGKIDIVSEEGEGSSFIVKLPITIVKENNIITERGNSDKIQMLEIEFSDIYLP
>CP034358.1|QAS59750.1|559911_560691_+|DUF1189-domain-containing-protein
MPILRRYVKVKLSFIKRMRISVANIRGYDVLVKECFNKVLMYILVLSLIIGLTLGISQAIFLGTFENIAINLLNEEDYKFEMKNGELNFEKSPYEKEEGSVISIFDTTKSVDDVESYRSIVVHKDMSVIFFKDGVVARSNGDQYIAKFKDIPFMPEYMNNDTLIDAVNKLSILKYIIIVVMVLVKYAAILVQGLIVSVAGILINKMKKTNLKYVDILKISLYAMTLPIILSLIIPIGAFTVVIATIYVIMVIKSLNNKK
>CP034358.1|QAS59749.1|558541_559768_-|murein-L,D-transpeptidase
MKIKSNTRNKKKKNFSLFKLISLFLFFIVLGAFTNIYLSNNYYNKLNEFYYSFNKCDFNTAQSKLASQSLFIKFHKNKYNQDLNNYFTGVIKKVCNSVKSGEITDNQALAILTEIKKYDVLNSSLDKLIASFDSNYASNSNKEDISNITNESLKSGIEALNNKDFLKAMSYFNSISKDNKKDFNSAKEYIHKTKEIYKNELITKSDELIANKYYTKAIELLSSYDTNILGENNKDINDKIHFVKMVKDEYLANIANEDSEYTSNAILQSITIDNVNALNIESKTPYFIYVNLLQQKTYIYEGAINNWKLIKTFESSTGLPGKETPKGVFAITGRGEWFFSEEFMQGGKYWVQFMGDYLFHSIPFNQDQSKIVDSTLGTPASHGCIRLEVDASKWLYDNAPNDTKIIIN
>CP034358.1|QAS59748.1|556989_558348_-|CCA-tRNA-nucleotidyltransferase
MNISIPNDVQLIIDTFYNNGYKAFMVGGCVRDSILSCNPKDYDITTSALPEETINLFNKTVPTGIKHGTITVLINDESYEVTTFRSDGEYNDNRRPDSVTFVRNIKDDLSRRDFTINALAYNKKEGLMDYFNGLNDLQNKIIKCVGDPNKRFNEDALRMLRAIRFSCQLDFQIDYPTYNSIRKNYKLINNISSERIRDELCKILISNNPSKGLELLKDTGILQIILPEIYELIEYTPNCNNHNRDVFKHTLKVIDNTENNLLLRLAALFHDVGKLNTMTLLENGHCYFPGHSCESATMTKKILSRLSFDNLTIKRVCSIINEHLVLNVKYLPTDGEIKRLINKVGSNNMSLLFSLQRADTKALWNPQPFLDKIDFMEYRVNLILENNEPLTVKDLAINGKTIAEKLNLNPGKIIGEILNHLLDEVLDDSSLNNEDILLNKSKSYLESKHPSP
>CP034358.1|QAS59747.1|556007_556754_-|MurR/RpiR-family-transcriptional-regulator
MFTYQQIESLNDLELQVYDYIIKNQHTVLKLTIRELAQKVHVSTTTILRFCKKMGCDGFFEFKYKLKEHLTETSKPFKLHINDYAAIDYFKRSNHPSELQKIIDASKIINKSKQIIFLGIGTSGILAKYASRCFINIGKFAVYIDYPYFLVPDGFYDETVIIVFSVSGETEDIINQIRQFRKFNCVVISITNSEISTIAKLSDLVISYYFPLQIKGENKINLTSQIPVMNIIEKLTFYLSQSECIENK
>CP034358.1|QAS62153.1|553868_555563_-|glycosyl-hydrolase-family-protein
MINVKAATNHQYDLVELNKVNLIKNSSFELGDLNWNLNNGKISKNKGLKGSNAGVLDTTALTGSNVNGYVGQVVSVEKNTDYEITFWARVDVEGAKANFSIRSNNDSGKFLSDINGSIIDLAITTTEWKKYKVNLNSGENTAIFIQLVKWATPDDNHYDKTKLCSAYIDDVSVININSLNNSSNYEIIWADDFNTGKLDTNIWGYELGSIRGHEQQHYVNSKDNIFTRVNKEGGELVLKATNRPSKDQYYNPRNENRKVIYNSGSIRTHGKKEFLYGRIEMRAKLPKGKGVFPAFWTLGSDFTLDGKIYNKQGRGWPECGEIDIMELTGQEENTSYGNRTVYQTLHYGIDKNDNGKYAGNGTNYSLSNEIFNDDYHIFGINWSKGKIEWYVDNKIVRTVDYSNDPIALSQIDTPQYIQLNLAMGGAWPGEVATNLAGSEFAIDYVYYAQNEQQKSDMEKYYSKQATITGVKDISMVAGSEPNLLDGISSNKNTSVDFSIENEPMFINDGSNKPCTSVDLLCRGKEDTDKLKALPKGRYNIHYTAIPTGESESGYVRKSAILTIK
>CP034358.1|QAS59746.1|553327_553651_+|hypothetical-protein
MSNKKNRNKEKKNRNKAKEDVSKTSAIKDKIILSVLIGEIFVAIGMLVLMFSVDKSMMVASGKLAWIIYLVIQVVLGFTVLNYKKDKNKGIYHWETVLITITYLVLP
>CP034358.1|QAS59745.1|549566_553301_+|helicase-exonuclease-AddAB-subunit-AddA
MGDTKWTDEQLQSITTRGCNLLVAAAAGSGKTAVLVERIIRIITNESNPVDIDRLLVVTFTSAAAAEMRERIAGAISKALEKNPNSKTLQRQLTLLSRSNITTMHSFCLDVIKNYFHTIDLDPSFRISDETENTLLKLEIINELFEDYYEEENESFKSLLEAYSGYRDDEKLKNIVLDLYRFSMSGPWPEKWLLEKADEFNIDTLEELNSTEWVKILKENIAVETQGYLSMLNKAVEIINETEGLEPYLPAFLSDIEALRRVYESLDNGMEDLYSSLSAVEFIKLKVVRKNNVSDEEAQKTVKNIRDGIKKKIAKLIEDSFSMTPEESLKGIKNSYPYMRTLAEITLEFSKRFSEKKKEKNILDFNDLEHFCLKILVDKDEKGDIKPSKVAEGFREFFDEVLVDEYQDSNNVQETIIDLVSRKSLDNPNVFMVGDVKQSIYRFRQAKPELFLDKYNKYPLLEGEKNRKIQLYKNFRSREEVINGVNYIFKMVMSKIVGELEYTEEEALNLGANYKEINEDDVMIAGPIELHILDKSGELYNNEDDEVENEEEELDSITLEARIVAKRINELFNSKDGKVYKVLDKETGEYRPIKYKDIVILLRATKNWAEIFLDELGYEGIPVYADTGTGYFESIEIRTIMALLKIIDNPMQDVPMISVLRSPIMGFTAEELGDIRLLDKDKYFYEIIRDIVENKYECDEELKIKCEALINGLNKWRRKAVYTPIDEFIWFLYMDTAYYGYVGAMPNGKLRQANLKILFQRAKQYEQTSFKGLFNFINFINKLRKSSGDMGSAKILGENEDVVRIMSIHKSKGLEFPVVFTSGVGKQFNLMDLNNPILYHDELGFGPEYVDLNKRNSYSTLAKEAIKKRIRLETLSEEMRILYVAFTRAKEKLIITGATRNLEKTVSNWYSASTLDLNLILPSEVLKGKSYLDWIGMAMFKHRNGEVLRDYIGACGDGLSNDFSTWSVQFWSKNDLVVDKKNQAVDNLEERELFITSKKSTVDKEIEKRLGYEYKYMYAGTLPSNISVSDLKRAAYEDVDDEVRTVKIFGEKEIIKPRFLQEKKGLSASERGTIVHFIMQKIDLNSVSSIGEIKDQIEEMKNKKLITKEEADVVKYKKIQLFFESNLGERLLKAYNTGAMIKREFPFFTEVSSLNIDKSLPKEIYENEMIRLQGIIDCFFEEDGEIVLLDYKTDFVEKDNEEAIKEKYKVQIQYYKDAVEKVTGKKVKESYLYLFYLDKEVRLD
>CP034358.1|QAS59744.1|546120_549564_+|helicase-exonuclease-AddAB-subunit-AddB
MGIRFIFGRAGTGKSRFCLEQIKKKIENGSNRKLILLVPEQYTFQSEKNLLDMVGESGLLTAEVLSFKRMAYIVFDECGGRTNIRMKDSGKNMLIHKILKDNGEDLEYFNRMSKQQGFTGIVSKTITEFKKYNISPEMLELKEADIEDEELKKKIKDLRLLFNDFNKILHEKYIDSEDELTFLAEKLNSCDIYNDAEIWLDEFTTFTPQQLEVIKRLAKKAKTINITLCCDSLNNGSKTDETDIFDAIKSTENKILKMMEENNIGYVEPINLNKGYSHRFINSKELQHIEKHFFTYPFKEYKNKVNDVRIYKANNSYDEVETVAKDILRLVRDNGYRFKDIAVVCREIDNYEKITSVIFNEYNIPYFLDKKRDVLNNPLIVLIISSLEILSSNWSYESVFKYLKSGLITIDSNYIDILENYVLANGIKGYKWTGELITKENDELTEEDILITEVMEEVRRPLINLYNKIKGEKKVIEICTALYEFLVELDVFKVMELWLEEFDNNGLQDRIKEYNQVPAIVMDILDQAVEVLGDEVTDIKGFAKILISGFEEQEIGVIPISLDQVNIGDIARIKGRDVKALYVVGVNDGILPSANKEEGIILDRERILLREIGVELASDTKTRAFEEQFMVYTALTIPSKYLMVIYPMADFEGKSLRPSIIIPRLKRLFPNLEEESDIYNKSLKEDRLNKITAPIPTFNELISALRMEFDSEEVEDYWAQTFKWFEGNEEFKDKINRMFKGLNYSNLVENMSKEKIRKLYATDTGKLKFSVSRIEKYAQCPFGYYVQYGLKAKNRKVYEFTAPDLGSFMHDILDAFTNKVKDEKIAWSDLDKGKCGDIVGELISIKLAEDSNSILNSNKRYMYFADRFRRTITKSVMVIAEQMKRGEFEVFKNEFSFGSFKDGEPIKIDLHSNETVYLVGRIDRIDTLNMDGNTYIRIVDYKSGAKKFDLNELYYGLQIQLLVYLDALIKNSQYLLDKQVIPGAILYFRIDDPIIKSKKELSEDEIQKQVLEKLKMNGLLLKDAKLVRAMDKNMETYSLVIPATFKKDGDFTSKSSVVTEEQFKLLREYVNKKMVDICEEMLSGTIKIEPCKYNQTTYCTYCDYSSICQFDTGIQDNKYKIILKKDNDEIWQSMKDTVEGIEKEGEK
>CP034358.1|QAS59743.1|545559_546078_+|N-acetyltransferase
MLFGEQIYLRDVVKEDIDILYDICVDVEVLKYNCGSVGIPSKDRIIERFHHLNRPNRKELSVVNKDSDVIGYVYYKENSYTIDTYSIGITIGKSYWGLGYGRDVVNQLCKYLFLKKKAHRIELEVVKDNERAIKCYKNCGFKEEGIRRSKYYLNGEYIDTVLMGMLKSEFKF
>CP034358.1|QAS59752.1|565299_565530_-|XRE-family-transcriptional-regulator
MINLNQKEIGKRIKLIRESQGLTRKEFAEKLNVTERTVANYEQGQRGSNTKVLNKIADALNVSIDAILLDGNVKKL
>CP034358.1|QAS62154.1|565783_565930_+|DNA-binding-protein
MEAKKILGVGRNEIYELCKTKGFPAFKIKSKYYVNKDKLQEWCDKQCK
>CP034358.1|QAS59753.1|569088_569277_+|hypothetical-protein
MDNSTVNQSTITDNKNNATEDQVNSSNENNDIELSVEQQRLIDILAKERALEIAQKILNLDY
>CP034358.1|QAS59754.1|569579_569765_+|hypothetical-protein
MLKDNLSGSVPTEIANSLIKNLVSESVAFNVCRHETMTSDKKVLPMLTDEGTAHWVGEGEK
>CP034358.1|QAS59755.1|569858_570422_+|phage-major-capsid-protein
MSVIGELESAIKDAFAKAIDKAVFFGTNSPFDTNIITEALKANAVTGTGKIDLDISEAMEKVEANDLAVNAIITHNGMKHTMRTLRDSSGNALVVPGRVGDSQIYNTDIFYPANKSWDKKQADILLGDFNRAVIGTREGIEYEILKEATVGEINLAEQDLVAIKCTMRFGFVIVDSKAFSVVRPKVD
>CP034358.1|QAS59756.1|570483_570738_+|terminase-small-subunit
MLTDNQKRFCKEYLKSGNATEAYLKAYKCTPKTANSNGCKLLTKDEVKAYLEELERTGGFEEATEQEIREFFTCTMRNPKAPYI
>CP034358.1|QAS59757.1|574904_575189_-|hypothetical-protein
MNKFDIFTKKLLANKGLNDTDYIELNEYIKDKLYIMKNEFIEDGKSEEESIDLAINYFQKKDFNIKDIINELPYKNKVVNLSRECKIVCVNFRK
>CP034358.1|QAS59758.1|575275_575419_-|hypothetical-protein
MHKIVSEGTCEINEATLYIALKRLESKNFIKSYYESTKFHTKENTIH
>CP034358.1|QAS59759.1|575964_576906_-|iron-siderophore-ABC-transporter-substrate-binding-protein
MTKKILSMILSSMVATSLFVSCSNKVDKTSKDQTISIQHSMGTSEIPKTPERVVILTNEGTEALLTLGIKPVGAVTGVTGDWYEHNKNELDGVKPIGKEKAPNIEAIAALKPDLIIGNKMRHEKIYDQLNSIAPTVFSDTIRGAWKDNFKFYANVLNKESEGEKAIGKYENKITYIKENYKEKLDTKISLVRFMEGKTRIYLGDTFAGTILKEIGFKRPESQQGTEFVNEIGKERLKEADGDVMFYFTYELGDGKGLAREAEWMQDPLFKSLDSVKSNKAFKVDDTIWNTAGGIKAANLMLDDLTSMLKEGKF
>CP034358.1|QAS59760.1|577039_578050_+|iron-ABC-transporter-permease
MGSIVKNNKGKFIVLLLLVALIFILCYLSISKGFIDTSYDMIIDSYRNFNNSQEHIIIRTSRVPRTLNAFLVGGALGVSGLLIQGLTRNKLASPSVLGINSGAVFALVIAITYISNISSFGLAWISFFGALLTAILVYVLSGGLHREIRSTDLTLGGAALAALLFSLTQGILYRNDVALEEVVYWMTGSVEGKKMEVIIQFAPIIIGVIIFTLFIGKKLNVFSLGEEMAKSLGMKTIYLKILIIAIVSVLSGVSVALAGPVAFIGLVTPHIVNKFFGTDYRWLIPFSVLIGSSILLLADIMSRFIIYPKEVPVGALTALIGGPFFIYIAIRRENND

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Crispr_ID: CP034358_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034358_4

1708740-1708964

TypeV-U3

Consensus_repeat	Method
GTTTAATATCAACAGAAGTTGTATTTAAAG	PILER-CR
GTTTAATATCAACAGAAGTTGTATTTAAAG	CRISPRCasFinder
TATCAACAGAAGTTGTATTTAAAG	CRT

3 spacers

c2c10_CAS-V-U3

The CRISPR arrays of CP034358_4

>merge|CP034358|4|1708740-1708964|PILER-CR,CRISPRCasFinder,CRT
GTTTAGTATCAACAGAAGTTGTATTTAAAGGATGTGAGAATATAGAGGGACATGAAGTTGATTATGGTTTAGTATCAACAGAAGTTGTATTTAAAGGTTCTCTTAGTAGTTTCTTTCATACTCTTATTAAGTTTAATATCAACAGAAGTTGTATTTAAAGAGTAACGCCATTACTTGTAAAAGCTCTTTTAATTTGTTTAATATCAACAGAAGTTGTATTTAAAG

>CP034358|4|1|1708740-1708964|PILER-CR
GTTTAGTATCAACAGAAGTTGTATTTAAAG	GATGTGAGAATATAGAGGGACATGAAGTTGATTATG
GTTTAGTATCAACAGAAGTTGTATTTAAAG	GTTCTCTTAGTAGTTTCTTTCATACTCTTATTAA
GTTTAATATCAACAGAAGTTGTATTTAAAG	AGTAACGCCATTACTTGTAAAAGCTCTTTTAATTT
GTTTAATATCAACAGAAGTTGTATTTAAAG

>CP034358|4|4|1708740-1708964|CRISPRCasFinder
GTTTAGTATCAACAGAAGTTGTATTTAAAG	GATGTGAGAATATAGAGGGACATGAAGTTGATTATG
GTTTAGTATCAACAGAAGTTGTATTTAAAG	GTTCTCTTAGTAGTTTCTTTCATACTCTTATTAA
GTTTAATATCAACAGAAGTTGTATTTAAAG	AGTAACGCCATTACTTGTAAAAGCTCTTTTAATTT
GTTTAATATCAACAGAAGTTGTATTTAAAG

>CP034358|4|1|1708746-1708964|CRT
TATCAACAGAAGTTGTATTTAAAG	GATGTGAGAATATAGAGGGACATGAAGTTGATTATGGTTTAG
TATCAACAGAAGTTGTATTTAAAG	GTTCTCTTAGTAGTTTCTTTCATACTCTTATTAAGTTTAA
TATCAACAGAAGTTGTATTTAAAG	AGTAACGCCATTACTTGTAAAAGCTCTTTTAATTTGTTTAA
TATCAACAGAAGTTGTATTTAAAG

Protein	Signature genes	Signature genes Name	Protein_function
CP034358.1\|QAS62181.1\|1703572_1703668_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377437
CP034358.1\|QAS60717.1\|1703040_1703301_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377437
CP034358.1\|QAS60716.1\|1702857_1703031_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379554
CP034358.1\|QAS60723.1\|1709513_1710167_+\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|379352
CP034358.1\|QAS60721.1\|1707983_1708286_+\|hypothetical-protein	c2c10_CAS-V-U3	-	unknown
CP034358.1\|QAS60726.1\|1712262_1712913_+\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS60722.1\|1709194_1709362_-\|ribbon-helix-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|289422
CP034358.1\|QAS60728.1\|1713817_1714594_-\|zinc-transporter-ZupT	unknown	unknown	gnl\|CDD\|235253
CP034358.1\|QAS62182.1\|1708343_1708535_+\|hypothetical-protein	c2c10_CAS-V-U3	-	gnl\|CDD\|284650
CP034358.1\|QAS60724.1\|1710235_1710991_+\|DNA-adenine-methylase	unknown	unknown	gnl\|CDD\|223415
CP034358.1\|QAS60725.1\|1711533_1712151_+\|DUF488-domain-containing-protein	unknown	unknown	gnl\|CDD\|377317
CP034358.1\|QAS60729.1\|1714823_1715645_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
CP034358.1\|QAS60730.1\|1715637_1716666_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|226122
CP034358.1\|QAS60714.1\|1701127_1701409_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379763
CP034358.1\|QAS60715.1\|1701478_1702525_+\|N-acetylmuramoyl-L-alanine-amidase	unknown	unknown	gnl\|CDD\|376556
CP034358.1\|QAS60719.1\|1703664_1703937_+\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS60718.1\|1703399_1703576_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377437
CP034358.1\|QAS60731.1\|1716911_1717454_+\|ECF-transporter-S-component	unknown	unknown	unknown
CP034358.1\|QAS60720.1\|1703951_1704143_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|334828
CP034358.1\|QAS60727.1\|1713107_1713764_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	unknown	unknown	gnl\|CDD\|234649

Protein	Function_ID	Function_description	E-value
CP034358.1\|QAS62181.1\|1703572_1703668_+\|hypothetical-protein	gnl\|CDD\|377437	pfam04986, Y2_Tnp, Putative transposase. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801. This is a rolling-circle transposase.	3.25496e-05
CP034358.1\|QAS60717.1\|1703040_1703301_+\|hypothetical-protein	gnl\|CDD\|377437	pfam04986, Y2_Tnp, Putative transposase. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801. This is a rolling-circle transposase.	8.50411e-09
CP034358.1\|QAS60716.1\|1702857_1703031_+\|hypothetical-protein	gnl\|CDD\|379554	pfam14319, Zn_Tnp_IS91, Transposase zinc-binding domain. This domain is likely to be a zinc-binding domain. It is found at the N-terminus of transposases belonging to the IS91 family.	1.59199e-16
CP034358.1\|QAS60718.1\|1703399_1703576_+\|hypothetical-protein	gnl\|CDD\|377437	pfam04986, Y2_Tnp, Putative transposase. Transposases are needed for efficient transposition of the insertion sequence or transposon DNA. This family includes transposases IS1294 and IS801. This is a rolling-circle transposase.	1.45535e-13
CP034358.1\|QAS60725.1\|1711533_1712151_+\|DUF488-domain-containing-protein	gnl\|CDD\|377317	pfam04343, DUF488, Protein of unknown function, DUF488. This family includes several proteins of uncharacterized function.	2.67798e-23
CP034358.1\|QAS60728.1\|1713817_1714594_-\|zinc-transporter-ZupT	gnl\|CDD\|235253	PRK04201, PRK04201, zinc transporter ZupT; Provisional.	8.91894e-106
CP034358.1\|QAS62182.1\|1708343_1708535_+\|hypothetical-protein	gnl\|CDD\|284650	pfam07282, OrfB_Zn_ribbon, Putative transposase DNA-binding domain. This putative domain is found at the C-terminus of a large number of transposase proteins. This domain contains four conserved cysteines suggestive of a zinc binding domain. Given the need for transposases to bind DNA as well as the large number of DNA-binding zinc fingers we hypothesize this domain is DNA-binding.	2.57624e-15
CP034358.1\|QAS60724.1\|1710235_1710991_+\|DNA-adenine-methylase	gnl\|CDD\|223415	COG0338, Dam, Site-specific DNA methylase [DNA replication, recombination, and repair].	1.68705e-38
CP034358.1\|QAS60730.1\|1715637_1716666_+\|hypothetical-protein	gnl\|CDD\|226122	COG3594, NolL, Fucose 4-O-acetylase and related acetyltransferases [Carbohydrate transport and metabolism].	3.78886e-22
CP034358.1\|QAS60729.1\|1714823_1715645_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	3.79898e-25
CP034358.1\|QAS60714.1\|1701127_1701409_+\|hypothetical-protein	gnl\|CDD\|379763	pfam16079, Phage_holin_5_2, Phage holin family Hol44, in holin superfamily V. Phage_holin_V_2 is a family of small hydrophobic proteins with three transmembrane domains of the Hol44 family. These proteins are produced by double-stranded DNA bacteriophages that use an endolysin-holin strategy to achieve lysis of their hosts. The endolysins are peptidoglycan-degrading enzymes that are usually accumulated in the cytosol until access to the cell wall substrate is provided by the holin membrane lesion. Full activity of the endolysin Lys44 from oenophage fOg44 requires sudden ion-nonspecific dissipation of the proton motive force, undertaken by the fOg44 holin during phage-infection.	5.47643e-08
CP034358.1\|QAS60715.1\|1701478_1702525_+\|N-acetylmuramoyl-L-alanine-amidase	gnl\|CDD\|376556	pfam01510, Amidase_2, N-acetylmuramoyl-L-alanine amidase. This family includes zinc amidases that have N-acetylmuramoyl-L-alanine amidase activity EC:3.5.1.28. This enzyme domain cleaves the amide bond between N-acetylmuramoyl and L-amino acids in bacterial cell walls (preferentially: D-lactyl-L-Ala). The structure is known for the bacteriophage T7 structure and shows that two of the conserved histidines are zinc binding.	2.15627e-17
CP034358.1\|QAS60722.1\|1709194_1709362_-\|ribbon-helix-helix-domain-containing-protein	gnl\|CDD\|289422	pfam12651, RHH_3, Ribbon-helix-helix domain. This short bacterial protein contains a ribbon-helix-helix domain that is likely to be DNA-binding.	6.59952e-09
CP034358.1\|QAS60723.1\|1709513_1710167_+\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|379352	pfam13730, HTH_36, Helix-turn-helix domain.	2.97527e-10
CP034358.1\|QAS60720.1\|1703951_1704143_+\|hypothetical-protein	gnl\|CDD\|334828	pfam02146, SIR2, Sir2 family. This region is characteristic of Silent information regulator 2 (Sir2) proteins, or sirtuins. These are protein deacetylases that depend on nicotine adenine dinucleotide (NAD). They are found in many subcellular locations, including the nucleus, cytoplasm and mitochondria. Eukaryotic forms play in important role in the regulation of transcriptional repression. Moreover, they are involved in microtubule organisation and DNA damage repair processes.i.	0.00936741
CP034358.1\|QAS60727.1\|1713107_1713764_+\|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB	gnl\|CDD\|234649	PRK00121, trmB, tRNA (guanine-N(7)-)-methyltransferase; Reviewed.	1.88462e-69

>CP034358.1|QAS62182.1|1708343_1708535_+|hypothetical-protein
MKCIFINPKFTSQRCSSCGYIDKKNRVSQSEFKCINCNHKENADVNASKNIAIPDIENIISEY
>CP034358.1|QAS60721.1|1707983_1708286_+|hypothetical-protein
MNYKERYINGDELIKYRQKIEARRRNLSIASKWASDNNTGHGYKARMDNVNRERDKYNRYKDTYNHKVSRYIINLAVKYNAGIIQMEDLSGFQNIKMKVY
>CP034358.1|QAS60720.1|1703951_1704143_+|hypothetical-protein
MKTEEILYICTICGAKENIPKEVVEYFDEMDQSNVDEPPCFSCEKCGGVMRPKEYTGVYGIKY
>CP034358.1|QAS60719.1|1703664_1703937_+|hypothetical-protein
MIDEKILSIRRSIATWENRILAIGGVNPCKCPNCGNKMRFHDIVYPKYGSMRERLRIKIIEENEEKLEKAIENYAITKRILSGKIIPKTT
>CP034358.1|QAS62181.1|1703572_1703668_+|hypothetical-protein
MIRHIPEKNFKMIRYFGIYSRRSKGKFNFIK
>CP034358.1|QAS60718.1|1703399_1703576_+|hypothetical-protein
MKSAKTAAKYVGRYVGRPAIAESRILKYDGENVTYKYTRHEDNKVIVETVHVYEFIKE
>CP034358.1|QAS60717.1|1703040_1703301_+|hypothetical-protein
MDWIDKDLRYCAARAVTSWMHSLNRKEEFTPGIVTVIHTFGRDLKWNPHVHMMVTEGGRGNITEWRHIRHISYESLRKKMAKGFVR
>CP034358.1|QAS60716.1|1702857_1703031_+|hypothetical-protein
MELKCNNCNTTKRIGFTCKSRFCTSCGKVYTDNWIDNMLGNLINVRHRHIVLLYQKN
>CP034358.1|QAS60715.1|1701478_1702525_+|N-acetylmuramoyl-L-alanine-amidase
MLKIERMISPYNHYEGNAIKYIVVHGTGAPEGTDSARNNAIYFYGGNRNASAHYFVDATSIYQSVEDFNGSWSVGDGYNQYGINNQNTLNIEMCCNNYTYDEGTIVNTLELVKVKQKEYGIPNSNVVRHFDASRKVCPEYFSLNNWEKWSNFIERLTGETVQQSKPVQKPSYNHGEGKYLNLHSHMEKWAIYATNVRPVTGNQKGYLKPKMFGGLSYKIIEDRGDVKIINTGDYGTVQIYAPNDADSSITDKPIYNNIAGPNPAPPVINVSYLNLHEHNYSWRVYPLNVPPVVGNECGALAPQRYGGLSYKIVENKGDIKIIDTQTFGRVQIYAPNDADSDVTNYPRY
>CP034358.1|QAS60714.1|1701127_1701409_+|hypothetical-protein
MDLLKFIPENLIILIVVIYVLGVFLKKLEGVKDKYITLILMFFGITFAILLNIVNGQYKVLFDVIVNGILQGILCWGVAVGINQTSKQISKEN
>CP034358.1|QAS60722.1|1709194_1709362_-|ribbon-helix-helix-domain-containing-protein
MADKKDSLVNRQRYSSTFDIELLEKMKELSKETSIPMSKLLDKALELLLKEHNKI
>CP034358.1|QAS60723.1|1709513_1710167_+|helix-turn-helix-domain-containing-protein
MQFLKLSTELITDNNITSNEFRIYSYLLSLYNVEKQCSYPSIDIISERLNISISTVKRSIKRLAELGYISIEKRKGLAGNFNVYKKLKHLINNVVKTKKVNKIAIDSNGEKAIEGQISVEEALEDIEETKVRTNIIDNSSNVRLARSVTNIDNSSFAKKVLSLSDNGLVRAAIKEFKKKRGKTPTFLIKLLVDQYYKEGIDLSKPLLNLLKRDYIII
>CP034358.1|QAS60724.1|1710235_1710991_+|DNA-adenine-methylase
MLKPPICRVGGKSKLRKSIIEQIPEHTCYIEVFFGAGWVYFGKESSKVEVINDIDKELVNLFRTIKYHAPEVERLLEYEFSGRDIFEEYKNCTLEYMTEIHRAIKFLYVITQSFAGKGNNYGYSTTTKPGQQIFYKEILLELRDRLKNTYVENLSFEKIIDKYDRKHSFFFCDPPYIKTCGYGNKFGEEEHRILANKLKEIQGKFLLTINDHPLARELYKEFNIKEVKVNYSIARENSARGKYNELIITNY
>CP034358.1|QAS60725.1|1711533_1712151_+|DUF488-domain-containing-protein
MDIFTIGHSNYTVEKLIDMLKHYDINCVVDIRGTPYSKYNIQFDKENIKYTLNKEGFIYIYMAKELAAKRENKISYNNEGYSDFEKVVYENEFINGIKRLKDGCTKGYRIALLGAMQDPIRCHRSILVGRALRKEGFNVKHIIDDYSIISQDKIESNILDKYFNNRAQLTIDYLLGNDLTEEEMINEGYRLANKEIGYRIEHLKS
>CP034358.1|QAS60726.1|1712262_1712913_+|hypothetical-protein
MKMKKLSLLVATLALTVGLAGCMPGSNAKLPEGDVKVAKQEIQGVVDLLLKSADYGKDESTVASILLPQDSQYNINVVMEKYKDGKLVDTKEITNYTTEKIEKNSIVHMILNVGKASDGENSRSIYSIAEVDKEKTKDEKNPEYKLTKINEHSLDYDVKSEVAQIGKNLDEEVTLAGYVKFKEDDTEKPAINLDTYKDEVSKYKEVSIVKMKVTKK
>CP034358.1|QAS60727.1|1713107_1713764_+|tRNA-(guanosine(46)-N7)-methyltransferase-TrmB
MRLRKKPWARPELESCPFFIINPSENRGKWKEIFGNNKPIYLELGCGKGTFIAVHGSENKDINYIAIDIKDEVLVLAKRNIEKAYSEKNEELDNIKLMAQEILIIDKILDSKDEISRIYINFCNPWPKDRHKKRRLTHTRQLEHYKTFLKDNGEIYFKTDDDELFDESLEYFKESGFNIEYITYDLHNSDFEGNVETEHEKMFTEMGIKTKFLIAKLA
>CP034358.1|QAS60728.1|1713817_1714594_-|zinc-transporter-ZupT
MFSNHCLMPLILSSLAGMSTVIGAFIVFFSKSKNKKLICFSLAFSAGVMISVSFTDLFSTAEETLRKSQGNLKGICYTILFLVIGAFIAMLIDMFIPEEPRLIASQRGNKLYRVGFVSMIALMIHNFPEGVATFVSGYENTTLGITIALAIALHNIPEGISIAMPIYYSTGSKLKAFKYTFVSGLAEPIGALLALLFLRPFINEIILAIIFAIVSGIMLYISFEELIPTARKYGYDKLYIFSIFLGICIIPLSHVLFN
>CP034358.1|QAS60729.1|1714823_1715645_+|alpha/beta-hydrolase
MNFKLEEKLSMLPLMWRITRYNLFSDKNVRFRDVKYGKNKRQYYRVFEGNDNEKPLIYFIHGGGWWHGSPKMCTCIGKYFNKLGYTVVLPSYRLVPIYKYPTQIEDVFTAFSHYIEDKNFKRGIIIMGFSAGGELAANLLFNKKIHEKYNIDNKIFKKMVSISGVLDFNKCTSRHAKTLIENYLGKNESFNGKNPVDLISYKSHISVLCIHGDRDPLINTDNSFSFVDKINKLQGYGKVILIKGKHHSDMTGLLLGKGEKDSNVVLEFIKTDE
>CP034358.1|QAS60730.1|1715637_1716666_+|hypothetical-protein
MNKLTNRNYLLDNLKVLLMFCVVFGHVIEYYINQSNILKGIYIFIYIFHMPLFNFISGYFSKNVEKISKGAIKGLLLPYLIFDMIWYMVVYIGTGEFMFSVLYPGWTLWYLLSLFFWRISLKYLIKIKYILPISFICGLLIGMLPSGSSVLAISRTITFLPFFLLGYYTKEKDFMEIQKSNKLISVIVIILFAYGAFYISKNNLIDYRFLYNSSTYYESGLTVFQGMFFRVLLYIGAIIFSICTINLTPKVKVIYSYIGKATMNIYVFHIYLVLLVYFFIPKWNLDYIRNTLLLLSPFLIIYILAKKPVTKVYDSIFYPVNKGIHHGRKSFKKCKDFKYKRF
>CP034358.1|QAS60731.1|1716911_1717454_+|ECF-transporter-S-component
MRTSIKVKEMVIAALLVALAIIIPIQFGFLKIIVGPFTATVASHVPMFIAMLISPITAIIVGVGSGIGFLLSGMPMHVVLRAFTHIIVGFVGAKIILKKRNFKQAIIVTAPIHGILEGLAVIPFGFNMYQVIIVTVIGTMIHHFIDGSLSFVLANSLAKVRKKDIYTTFNDKMSIDNIVV

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Crispr_ID: CP034358_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034358_5

2545844-2551817

Unclear

Consensus_repeat	Method
ATTTACATTCCACTAGTTAAGATAAAAC	PILER-CR
ATTTACATTCCACTAGTTAAGATAAAAC	CRISPRCasFinder
ATTTACATTCCACTAGTTAAGATAAAAC	CRT
ATTTACATTCCACTAGTTAAGATAAAAC	PILER-CR

92 spacers

cas2,cas1,cas5,cas7,cas8b2,cas6,WYL

The CRISPR arrays of CP034358_5

>merge|CP034358|5|2545844-2551817|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
ATTTACATTCCACTAGTTAAAATAAAACACTTCCTCCATATTTTCCCATCGTTTTTGAACTAAATTTACATTCCACTAGTTAAAATAAAACGTGAATTACCCTCTATTATTTTGCAAGAAATCCAATATTTACATTCCACTAGTTAAGATAAAACAGATGGAGGTTATTGTTCAATGGTTGTTACTCAAACATTTACATTCCACTAGTTAAGATAAAACGTGTCAATCACCCTGAAACAGGTCAAGTGATAACAACATTTACATTCCACTAGTTAAGATAAAACAATGAATTAATAAAAGAAAAAGGAGATATTTAAATGAATTTACATTCCACTAGTTAAGATAAAACGGAATATAAAATGGGAATAAGAGAAAATTATTTTAAATTTACATTCCACTAGTTAAGATAAAACGGACGTTGAAACACACTTTAATCAGTTCAAAGTTTATTTACATTCCACTAGTTAAGATAAAACGATTTAATGGAAGAAATTATTGTTGATTCATTGAATAATTTACATTCCACTAGTTAAGATAAAACGTTCTTAGACAATTTTATATAGAAACTTTAGGAAAATTTACATTCCACTAGTTAAGATAAAACTTACGTTCATAAAATATCACCTCAATCAAAGTAACTAGATTTACATTCCACTAGTTAAGATAAAACCGAGTTTATTCGACAAATCAGGCAACATCGTCACGAATTTACATTCCACTAGTTAAGATAAAACTAACGTTAAAGATAATATAACTTGCATAGCGAATTTGTATTTACATTCCACTAGTTAAGATAAAACTTGCAAAGTGATTTATGAGCCACGCTCCGCTATAGAATTTACATTCCACTAGTTAAGATAAAACCAATGCAACAAAGAAATAAACAACTGTCACAAGCTCATTTACATTCCACTAGTTAAGATAAAACTACCCGTTTCACAGAACACAGAACTTAGCATGAAGAATTTACATTCCACTAGTTAAGATAAAACAATCTAAAACATATAACATTCTAATTTGTTTCTTTTATTTACATTCCACTAGTTAAGATAAAACAATACATACCGGCTGGATAGTTACCAACTCCATTGATATTTACATTCCACTAGTTAAGATAAAACTCCTATCAACAATAATCAATGAACATTCATTAACAGAATTTACATTCCACTAGTTAAGATAAAACCAAGAAGTTAAAAAAGAAAATAGAAGAAATGGAGAAGGAATTTACATTCCACTAGTTAAGATAAAACATAGCGATGACGACATGGAAGGTGATGAACTTGATTAAGATTTACATTCCACTAGTTAAGATAAAACAGTCAAAACCACATTCTATTATATAAGTTTCTTTATTATTTACATTCCACTAGTTAAGATAAAACTCATATTTTTCCCTCATTACTATTACCTCCTACAAATTTACATTCCACTAGTTAAGATAAAACTTATACTAGATCCACTTATTGAACTTCTACATGATGAATTTACATTCCACTAGTTAAGATAAAACGCTTAGAACTTTCTGCCCATCTTACCCCTAAATAAAATTTACATTCCACTAGTTAAGATAAAACAAGCCAGTAGCAATATTATTTAGAGAAACTTTTAGTGAATTTACATTCCACTAGTTAAGATAAAACGCGAGCAGCGTACTTAACTTGATTTTATCTACTTAAAATTTACATTCCACTAGTTAAGATAAAACATGTAAGCTTATCTATGCTAGTAAATAAATCTCCTATTTACATTCCACTAGTTAAGATAAAACCTTGTAGCCTCTAGCTTATTTGACAACTCTTCCATATATTTACATTCCACTAGTTAAGATAAAACTAGCTTTTGCCTTGATTAATGTATTCCATTTAGTAATATTTACATTCCACTAGTTAAGATAAAACGAATGCTCGTTGATTATTACTGATAAGAATCCCAAATTTACATTCCACTAGTTAAGATAAAACGTTAATTTGTGGTATTGCTCCGTGGACTTTTCTCGTATTTACATTCCACTAGTTAAGATAAAACGCTCCTCTTCAAATTTAGGTGTTTTATTGTAACCACAATTTACATTCCACTAGTTAAGATAAAACCCACAATTGGAAGCATTATAGTAATAAGGATAAACCTATTTACATTCCACTAGTTAAGATAAAACGTTACTTAAGTCTGGAACGACTCCATCAGCACCTCTATTTACATTCCACTAGTTAAGATAAAACCTAAAAATCTCCCCAGCCCATATCCAAGGTTCTATGATTTACATTCCACTAGTTAAGATAAAACAGACAACGTTGTTGTTCTGAACAATGTGATAAGTAAAATTTACATTCCACTAGTTAAGATAAAACTTACTGGGGTCCTGTTAAGGAAAGTCAAGTTGAAGATTTACATTCCACTAGTTAAGATAAAACCATCATCCTCACTCATGAAGTAATAGTACATACCCGCATTTACATTCCACTAGTTAAGATAAAACGTTCCATATAGATAATCTATTGCCCTAGTGGTTATATATTTACATTCCACTAGTTAAGATAAAACAAATACAGACAACTATACGAGTCAGAATTAGCATGTAATTTACATTCCACTAGTTAAGATAAAACGCAATCGCTCCTGGATATTTTAATAGTATTAGAACCATTTACATTCCACTAGTTAAGATAAAACTTCTCTAATAATCTTCATTGCTTTTTTCAATCTCTAATTTACATTCCACTAGTTAAGATAAAACTTAAAACAAGAGTTAGAAAACGTGGATTGGAATACAATTTACATTCCACTAGTTAAGATAAAACACCAATTAACCAAAATAGGGATATGGGTTCAGCTTTATTTACATTCCACTAGTTAAGATAAAACGCTCAGCCACAAGTTCAGCAACAAGCACCACAAAGTGATTTACATTCCACTAGTTAAGATAAAACTAAAGACTTGAACAAGGAGACTATCAAGCTAATTCAAAATTTACATTCCACTAGTTAAGATAAAACTAAACTATCTAGCGACTTCCCTAATGGGACAGCTACATTTACATTCCACTAGTTAAGATAAAACGAGCAAAACGTTGAGGGAGATGGTTCCAACATCATCAAATTTACATTCCACTAGTTAAGATAAAACCCATTAATACATTTCTCCTTTCAAAATATCTTTAATCTATTTACATTCCACTAGTTAAGATAAAACATTAAAGAATGGGGATATCCTGTAATTAGTAAAGATGATTTACATTCCACTAGTTAAGATAAAACCTCGCTTAGAGGTTTAATGTCTTTATATCCTACAACAGATTTACATTCCACTAGTTAAGATAAAACCAGTTCCAGCCCATACTCTGTTTGCATTCTTTGTTTGCATTTACATTCCACTAGTTAAGATAAAACTTTCTAATATTTTCTTCTCTCTATGCTTGATTCCACTATTTACATTCCACTAGTTAAGATAAAACCCACAATTGGAAGCATTATAGTAATAAGGATAAACCTATTTACATTCCACTAGTTAAGATAAAACGTTACTTAAGTCTGGAACGACTCCATCAGCACCTCTATTTACATTCCACTAGTTAAGATAAAACCTAAAAATCTCCCCAGCCCATATCCAAGGTTCTATGATTTACATTCCACTAGTTAAGATAAAACAGACAACGTTGTTGTTCTGAACAATGTGATAAGTAAAATTTACATTCCACTAGTTAAGATAAAACTTACTGGGGTCCTGTTAAGGAAAGTCAAGTTGAAGATTTACATTCCACTAGTTAAGATAAAACCATCATCCTCACTCATGAAGTAATAGTACATACCCGCATTTACATTCCACTAGTTAAGATAAAACGTTCCATATAGATAATCTATTGCCCTAGTGGTTATATATTTACATTCCACTAGTTAAGATAAAACAAATACAGACAACTATACGAGTCAGAATTAGCATGTAATTTACATTCCACTAGTTAAGATAAAACGCAATCGCTCCTGGATATTTTAATAGTATTAGAACCATTTACATTCCACTAGTTAAGATAAAACTTCTCTAATAATCTTCATTGCTTTTTTCAATCTCTAATTTACATTCCACTAGTTAAGATAAAACTTAAAACAAGAGTTAGAAAACGTGGATTGGAATACAATTTACATTCCACTAGTTAAGATAAAACACCAATTAACCAAAATAGGGATATGGGTTCAGCTTTATTTACATTCCACTAGTTAAGATAAAACGCTCAGCCACAAGTTCAGCAACAAGCACCACAAAGTGATTTACATTCCACTAGTTAAGATAAAACCTATTGTTAAAGTTCCGTCCCCACCGTCATATGCGGTATTTACATTCCACTAGTTAAGATAAAACTTGTTAAGTTTGAATAGTATCTGAACAATCTATGAACATTTACATTCCACTAGTTAAGATAAAACTGACCAGCAACCTAATACATAGTTTCCTAATCTGAATTTACATTCCACTAGTTAAGATAAAACGTTCCATATAAGTAGTCTATTGCTCTAGTAGTTATGTATTTACATTCCACTAGTTAAGATAAAACTAACTTCTCGACTTAATGATATTTCTATAAAAGTCGTATTTACATTCCACTAGTTAAGATAAAACCCTCCATTATGCACACCACTCAATGTGTATAATGCAAATAATTACATTCCACTAGTTAAGATAAAACAATATAAAGAGTTAATAATAACAAACTACTAATTTACATTTACATTCCACTAGTTAAGATAAAACTATGATATGCTAGAAGGTGAAGTAAAGTTTAATATAATTTACATTCCACTAGTTAAGATAAAACAATGCAATTCACTCTTGTTATCTAACCCCGCTCATCTATTTACATTCCACTAGTTAAGATAAAACCAGGTTGACCTGTCCCACTGTTATTACTACTATCTACATTTACATTCCACTAGTTAAGATAAAACTCTTTACCATTTAGTACTTACTATACCGAACCTTGAATTTACATTCCACTAGTTAAGATAAAACAGTTTTTTTATTTTTTATGTTTATAGGATTAGTCACATTTACATTCCACTAGTTAAGATAAAACAAGTAAGAAGTGACCTTATGAACTCTGCAATGCAAAATTTACATTCCACTAGTTAAGATAAAACTTGGGTTAACAAACACACCGATTACTGCAACTACAAATTTACATTCCACTAGTTAAGATAAAACGGATTATAATATAAATATCCCGGAAAATTCATTAGGATTTACATTCCACTAGTTAAGATAAAACCTAGAGAATTATTAAAGGTATGTACATTAACTAGCATATTTACATTCCACTAGTTAAGATAAAACACTCAAATATTCCACATGTTGATATGATATCCCATGAATTTACATTCCACTAGTTAAGATAAAACAATATAGTTTGGTCTTTAGTATTTAATTCCAAACTTAATTTACATTCCACTAGTTAAGATAAAACTTGCTAATTCTTCTCCATATTTAATATGTGGATATTCTTATTTACATTCCACTAGTTAAGATAAAACCTGAGGTATCTAAAACACATTTCTTTTACAAAATATATTTACATTCCACTAGTTAAGATAAAACTCCCTTTAATTCTACCATTTCAACCTCTTCTTTTAGAATTTACATTCCACTAGTTAAGATAAAACTTTATCTATTTGTTGCTGACTACGTTTTTGGAGTTATATTTACATTCCACTAGTTAAGATAAAACCTTTTCTCTGATGAAGAAATCTTGATACAGAAACTGATTTACATTCCACTAGTTAAGATAAAACCTTCTAAATACTCTTTTCCTTTTCTTAATAAGTTACTATTTACATTCCACTAGTTAAGATAAAACAGCATGACCATACTCTAATAAATGAGTTAATCTATATATTTACATTCCACTAGTTAAGATAAAACTCCCATCTCCATTTTCTCTTCATATTTAACTCCTTTATTTACATTCCACTAGTTAAGATAAAAC

>CP034358|5|2|2545844-2550457|PILER-CR
ATTTACATTCCACTAGTTAAAATAAAAC	ACTTCCTCCATATTTTCCCATCGTTTTTGAACTAA
ATTTACATTCCACTAGTTAAAATAAAAC	GTGAATTACCCTCTATTATTTTGCAAGAAATCCAAT
ATTTACATTCCACTAGTTAAGATAAAAC	AGATGGAGGTTATTGTTCAATGGTTGTTACTCAAAC
ATTTACATTCCACTAGTTAAGATAAAAC	GTGTCAATCACCCTGAAACAGGTCAAGTGATAACAAC
ATTTACATTCCACTAGTTAAGATAAAAC	AATGAATTAATAAAAGAAAAAGGAGATATTTAAATGA
ATTTACATTCCACTAGTTAAGATAAAAC	GGAATATAAAATGGGAATAAGAGAAAATTATTTTAA
ATTTACATTCCACTAGTTAAGATAAAAC	GGACGTTGAAACACACTTTAATCAGTTCAAAGTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GATTTAATGGAAGAAATTATTGTTGATTCATTGAATA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCTTAGACAATTTTATATAGAAACTTTAGGAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACGTTCATAAAATATCACCTCAATCAAAGTAACTAG
ATTTACATTCCACTAGTTAAGATAAAAC	CGAGTTTATTCGACAAATCAGGCAACATCGTCACGA
ATTTACATTCCACTAGTTAAGATAAAAC	TAACGTTAAAGATAATATAACTTGCATAGCGAATTTGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTGCAAAGTGATTTATGAGCCACGCTCCGCTATAGA
ATTTACATTCCACTAGTTAAGATAAAAC	CAATGCAACAAAGAAATAAACAACTGTCACAAGCTC
ATTTACATTCCACTAGTTAAGATAAAAC	TACCCGTTTCACAGAACACAGAACTTAGCATGAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AATCTAAAACATATAACATTCTAATTTGTTTCTTTT
ATTTACATTCCACTAGTTAAGATAAAAC	AATACATACCGGCTGGATAGTTACCAACTCCATTGAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCTATCAACAATAATCAATGAACATTCATTAACAGA
ATTTACATTCCACTAGTTAAGATAAAAC	CAAGAAGTTAAAAAAGAAAATAGAAGAAATGGAGAAGGA
ATTTACATTCCACTAGTTAAGATAAAAC	ATAGCGATGACGACATGGAAGGTGATGAACTTGATTAAG
ATTTACATTCCACTAGTTAAGATAAAAC	AGTCAAAACCACATTCTATTATATAAGTTTCTTTATT
ATTTACATTCCACTAGTTAAGATAAAAC	TCATATTTTTCCCTCATTACTATTACCTCCTACAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTATACTAGATCCACTTATTGAACTTCTACATGATGA
ATTTACATTCCACTAGTTAAGATAAAAC	GCTTAGAACTTTCTGCCCATCTTACCCCTAAATAAA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGCCAGTAGCAATATTATTTAGAGAAACTTTTAGTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GCGAGCAGCGTACTTAACTTGATTTTATCTACTTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	ATGTAAGCTTATCTATGCTAGTAAATAAATCTCCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTGTAGCCTCTAGCTTATTTGACAACTCTTCCATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TAGCTTTTGCCTTGATTAATGTATTCCATTTAGTAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GAATGCTCGTTGATTATTACTGATAAGAATCCCAA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTAATTTGTGGTATTGCTCCGTGGACTTTTCTCGT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCCTCTTCAAATTTAGGTGTTTTATTGTAACCACA
ATTTACATTCCACTAGTTAAGATAAAAC	CCACAATTGGAAGCATTATAGTAATAAGGATAAACCT
ATTTACATTCCACTAGTTAAGATAAAAC	GTTACTTAAGTCTGGAACGACTCCATCAGCACCTCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTAAAAATCTCCCCAGCCCATATCCAAGGTTCTATG
ATTTACATTCCACTAGTTAAGATAAAAC	AGACAACGTTGTTGTTCTGAACAATGTGATAAGTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACTGGGGTCCTGTTAAGGAAAGTCAAGTTGAAG
ATTTACATTCCACTAGTTAAGATAAAAC	CATCATCCTCACTCATGAAGTAATAGTACATACCCGC
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAGATAATCTATTGCCCTAGTGGTTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	AAATACAGACAACTATACGAGTCAGAATTAGCATGTA
ATTTACATTCCACTAGTTAAGATAAAAC	GCAATCGCTCCTGGATATTTTAATAGTATTAGAACC
ATTTACATTCCACTAGTTAAGATAAAAC	TTCTCTAATAATCTTCATTGCTTTTTTCAATCTCTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTAAAACAAGAGTTAGAAAACGTGGATTGGAATACA
ATTTACATTCCACTAGTTAAGATAAAAC	ACCAATTAACCAAAATAGGGATATGGGTTCAGCTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCAGCCACAAGTTCAGCAACAAGCACCACAAAGTG
ATTTACATTCCACTAGTTAAGATAAAAC	TAAAGACTTGAACAAGGAGACTATCAAGCTAATTCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TAAACTATCTAGCGACTTCCCTAATGGGACAGCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCAAAACGTTGAGGGAGATGGTTCCAACATCATCAA
ATTTACATTCCACTAGTTAAGATAAAAC	CCATTAATACATTTCTCCTTTCAAAATATCTTTAATCT
ATTTACATTCCACTAGTTAAGATAAAAC	ATTAAAGAATGGGGATATCCTGTAATTAGTAAAGATG
ATTTACATTCCACTAGTTAAGATAAAAC	CTCGCTTAGAGGTTTAATGTCTTTATATCCTACAACAG
ATTTACATTCCACTAGTTAAGATAAAAC	CAGTTCCAGCCCATACTCTGTTTGCATTCTTTGTTTGC
ATTTACATTCCACTAGTTAAGATAAAAC	TTTCTAATATTTTCTTCTCTCTATGCTTGATTCCACT
ATTTACATTCCACTAGTTAAGATAAAAC	CCACAATTGGAAGCATTATAGTAATAAGGATAAACCT
ATTTACATTCCACTAGTTAAGATAAAAC	GTTACTTAAGTCTGGAACGACTCCATCAGCACCTCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTAAAAATCTCCCCAGCCCATATCCAAGGTTCTATG
ATTTACATTCCACTAGTTAAGATAAAAC	AGACAACGTTGTTGTTCTGAACAATGTGATAAGTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACTGGGGTCCTGTTAAGGAAAGTCAAGTTGAAG
ATTTACATTCCACTAGTTAAGATAAAAC	CATCATCCTCACTCATGAAGTAATAGTACATACCCGC
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAGATAATCTATTGCCCTAGTGGTTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	AAATACAGACAACTATACGAGTCAGAATTAGCATGTA
ATTTACATTCCACTAGTTAAGATAAAAC	GCAATCGCTCCTGGATATTTTAATAGTATTAGAACC
ATTTACATTCCACTAGTTAAGATAAAAC	TTCTCTAATAATCTTCATTGCTTTTTTCAATCTCTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTAAAACAAGAGTTAGAAAACGTGGATTGGAATACA
ATTTACATTCCACTAGTTAAGATAAAAC	ACCAATTAACCAAAATAGGGATATGGGTTCAGCTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCAGCCACAAGTTCAGCAACAAGCACCACAAAGTG
ATTTACATTCCACTAGTTAAGATAAAAC	CTATTGTTAAAGTTCCGTCCCCACCGTCATATGCGGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTGTTAAGTTTGAATAGTATCTGAACAATCTATGAAC
ATTTACATTCCACTAGTTAAGATAAAAC	TGACCAGCAACCTAATACATAGTTTCCTAATCTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAAGTAGTCTATTGCTCTAGTAGTTATGT
ATTTACATTCCACTAGTTAAGATAAAAC	TAACTTCTCGACTTAATGATATTTCTATAAAAGTCGT
ATTTACATTCCACTAGTTAAGATAAAACCCTCCATTATGCACACCACTCAATGTGTATAATGCAAATAATTACATTCCACTAGTTAAGATAAAACAATATAAAGAGTTAATAATAACAAACTACTAATTTACATTTACATTCCACTAGTTAAGATAAAAC	TATGATATGCTAGAAGGTGAAGTAAAGTTTAATATA
ATTTACATTCCACTAGTTAAGATAAAAC	AATGCAATTCACTCTTGTTATCTAACCCCGCTCATCT
ATTTACATTCCACTAGTTAAGATAAAAC	CAGGTTGACCTGTCCCACTGTTATTACTACTATCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	TCTTTACCATTTAGTACTTACTATACCGAACCTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	AGTTTTTTTATTTTTTATGTTTATAGGATTAGTCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTAAGAAGTGACCTTATGAACTCTGCAATGCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTGGGTTAACAAACACACCGATTACTGCAACTACAA
ATTTACATTCCACTAGTTAAGATAAAAC	GGATTATAATATAAATATCCCGGAAAATTCATTAGG
ATTTACATTCCACTAGTTAAGATAAAAC	CTAGAGAATTATTAAAGGTATGTACATTAACTAGCAT
ATTTACATTCCACTAGTTAAGATAAAAC	ACTCAAATATTCCACATGTTGATATGATATCCCATGA
ATTTACATTCCACTAGTTAAGATAAAAC	AATATAGTTTGGTCTTTAGTATTTAATTCCAAACTTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTGCTAATTCTTCTCCATATTTAATATGTGGATATTCTT
ATTTACATTCCACTAGTTAAGATAAAAC	CTGAGGTATCTAAAACACATTTCTTTTACAAAATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCCTTTAATTCTACCATTTCAACCTCTTCTTTTAGA
ATTTACATTCCACTAGTTAAGATAAAAC	TTTATCTATTTGTTGCTGACTACGTTTTTGGAGTTAT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTTTCTCTGATGAAGAAATCTTGATACAGAAACTG
ATTTACATTCCACTAGTTAAGATAAAAC	CTTCTAAATACTCTTTTCCTTTTCTTAATAAGTTACT
ATTTACATTCCACTAGTTAAGATAAAAC	AGCATGACCATACTCTAATAAATGAGTTAATCTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCCATCTCCATTTTCTCTTCATATTTAACTCCTTT


>CP034358|5|5|2545844-2551817|CRISPRCasFinder
ATTTACATTCCACTAGTTAAAATAAAAC	ACTTCCTCCATATTTTCCCATCGTTTTTGAACTAA
ATTTACATTCCACTAGTTAAAATAAAAC	GTGAATTACCCTCTATTATTTTGCAAGAAATCCAAT
ATTTACATTCCACTAGTTAAGATAAAAC	AGATGGAGGTTATTGTTCAATGGTTGTTACTCAAAC
ATTTACATTCCACTAGTTAAGATAAAAC	GTGTCAATCACCCTGAAACAGGTCAAGTGATAACAAC
ATTTACATTCCACTAGTTAAGATAAAAC	AATGAATTAATAAAAGAAAAAGGAGATATTTAAATGA
ATTTACATTCCACTAGTTAAGATAAAAC	GGAATATAAAATGGGAATAAGAGAAAATTATTTTAA
ATTTACATTCCACTAGTTAAGATAAAAC	GGACGTTGAAACACACTTTAATCAGTTCAAAGTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GATTTAATGGAAGAAATTATTGTTGATTCATTGAATA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCTTAGACAATTTTATATAGAAACTTTAGGAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACGTTCATAAAATATCACCTCAATCAAAGTAACTAG
ATTTACATTCCACTAGTTAAGATAAAAC	CGAGTTTATTCGACAAATCAGGCAACATCGTCACGA
ATTTACATTCCACTAGTTAAGATAAAAC	TAACGTTAAAGATAATATAACTTGCATAGCGAATTTGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTGCAAAGTGATTTATGAGCCACGCTCCGCTATAGA
ATTTACATTCCACTAGTTAAGATAAAAC	CAATGCAACAAAGAAATAAACAACTGTCACAAGCTC
ATTTACATTCCACTAGTTAAGATAAAAC	TACCCGTTTCACAGAACACAGAACTTAGCATGAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AATCTAAAACATATAACATTCTAATTTGTTTCTTTT
ATTTACATTCCACTAGTTAAGATAAAAC	AATACATACCGGCTGGATAGTTACCAACTCCATTGAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCTATCAACAATAATCAATGAACATTCATTAACAGA
ATTTACATTCCACTAGTTAAGATAAAAC	CAAGAAGTTAAAAAAGAAAATAGAAGAAATGGAGAAGGA
ATTTACATTCCACTAGTTAAGATAAAAC	ATAGCGATGACGACATGGAAGGTGATGAACTTGATTAAG
ATTTACATTCCACTAGTTAAGATAAAAC	AGTCAAAACCACATTCTATTATATAAGTTTCTTTATT
ATTTACATTCCACTAGTTAAGATAAAAC	TCATATTTTTCCCTCATTACTATTACCTCCTACAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTATACTAGATCCACTTATTGAACTTCTACATGATGA
ATTTACATTCCACTAGTTAAGATAAAAC	GCTTAGAACTTTCTGCCCATCTTACCCCTAAATAAA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGCCAGTAGCAATATTATTTAGAGAAACTTTTAGTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GCGAGCAGCGTACTTAACTTGATTTTATCTACTTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	ATGTAAGCTTATCTATGCTAGTAAATAAATCTCCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTGTAGCCTCTAGCTTATTTGACAACTCTTCCATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TAGCTTTTGCCTTGATTAATGTATTCCATTTAGTAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GAATGCTCGTTGATTATTACTGATAAGAATCCCAA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTAATTTGTGGTATTGCTCCGTGGACTTTTCTCGT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCCTCTTCAAATTTAGGTGTTTTATTGTAACCACA
ATTTACATTCCACTAGTTAAGATAAAAC	CCACAATTGGAAGCATTATAGTAATAAGGATAAACCT
ATTTACATTCCACTAGTTAAGATAAAAC	GTTACTTAAGTCTGGAACGACTCCATCAGCACCTCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTAAAAATCTCCCCAGCCCATATCCAAGGTTCTATG
ATTTACATTCCACTAGTTAAGATAAAAC	AGACAACGTTGTTGTTCTGAACAATGTGATAAGTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACTGGGGTCCTGTTAAGGAAAGTCAAGTTGAAG
ATTTACATTCCACTAGTTAAGATAAAAC	CATCATCCTCACTCATGAAGTAATAGTACATACCCGC
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAGATAATCTATTGCCCTAGTGGTTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	AAATACAGACAACTATACGAGTCAGAATTAGCATGTA
ATTTACATTCCACTAGTTAAGATAAAAC	GCAATCGCTCCTGGATATTTTAATAGTATTAGAACC
ATTTACATTCCACTAGTTAAGATAAAAC	TTCTCTAATAATCTTCATTGCTTTTTTCAATCTCTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTAAAACAAGAGTTAGAAAACGTGGATTGGAATACA
ATTTACATTCCACTAGTTAAGATAAAAC	ACCAATTAACCAAAATAGGGATATGGGTTCAGCTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCAGCCACAAGTTCAGCAACAAGCACCACAAAGTG
ATTTACATTCCACTAGTTAAGATAAAAC	TAAAGACTTGAACAAGGAGACTATCAAGCTAATTCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TAAACTATCTAGCGACTTCCCTAATGGGACAGCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCAAAACGTTGAGGGAGATGGTTCCAACATCATCAA
ATTTACATTCCACTAGTTAAGATAAAAC	CCATTAATACATTTCTCCTTTCAAAATATCTTTAATCT
ATTTACATTCCACTAGTTAAGATAAAAC	ATTAAAGAATGGGGATATCCTGTAATTAGTAAAGATG
ATTTACATTCCACTAGTTAAGATAAAAC	CTCGCTTAGAGGTTTAATGTCTTTATATCCTACAACAG
ATTTACATTCCACTAGTTAAGATAAAAC	CAGTTCCAGCCCATACTCTGTTTGCATTCTTTGTTTGC
ATTTACATTCCACTAGTTAAGATAAAAC	TTTCTAATATTTTCTTCTCTCTATGCTTGATTCCACT
ATTTACATTCCACTAGTTAAGATAAAAC	CCACAATTGGAAGCATTATAGTAATAAGGATAAACCT
ATTTACATTCCACTAGTTAAGATAAAAC	GTTACTTAAGTCTGGAACGACTCCATCAGCACCTCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTAAAAATCTCCCCAGCCCATATCCAAGGTTCTATG
ATTTACATTCCACTAGTTAAGATAAAAC	AGACAACGTTGTTGTTCTGAACAATGTGATAAGTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACTGGGGTCCTGTTAAGGAAAGTCAAGTTGAAG
ATTTACATTCCACTAGTTAAGATAAAAC	CATCATCCTCACTCATGAAGTAATAGTACATACCCGC
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAGATAATCTATTGCCCTAGTGGTTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	AAATACAGACAACTATACGAGTCAGAATTAGCATGTA
ATTTACATTCCACTAGTTAAGATAAAAC	GCAATCGCTCCTGGATATTTTAATAGTATTAGAACC
ATTTACATTCCACTAGTTAAGATAAAAC	TTCTCTAATAATCTTCATTGCTTTTTTCAATCTCTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTAAAACAAGAGTTAGAAAACGTGGATTGGAATACA
ATTTACATTCCACTAGTTAAGATAAAAC	ACCAATTAACCAAAATAGGGATATGGGTTCAGCTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCAGCCACAAGTTCAGCAACAAGCACCACAAAGTG
ATTTACATTCCACTAGTTAAGATAAAAC	CTATTGTTAAAGTTCCGTCCCCACCGTCATATGCGGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTGTTAAGTTTGAATAGTATCTGAACAATCTATGAAC
ATTTACATTCCACTAGTTAAGATAAAAC	TGACCAGCAACCTAATACATAGTTTCCTAATCTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAAGTAGTCTATTGCTCTAGTAGTTATGT
ATTTACATTCCACTAGTTAAGATAAAAC	TAACTTCTCGACTTAATGATATTTCTATAAAAGTCGT
ATTTACATTCCACTAGTTAAGATAAAAC	CCTCCATTATGCACACCACTCAATGTGTATAATGCAAAT
AATTACATTCCACTAGTTAAGATAAAAC	AATATAAAGAGTTAATAATAACAAACTACTAATTTAC
ATTTACATTCCACTAGTTAAGATAAAAC	TATGATATGCTAGAAGGTGAAGTAAAGTTTAATATA
ATTTACATTCCACTAGTTAAGATAAAAC	AATGCAATTCACTCTTGTTATCTAACCCCGCTCATCT
ATTTACATTCCACTAGTTAAGATAAAAC	CAGGTTGACCTGTCCCACTGTTATTACTACTATCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	TCTTTACCATTTAGTACTTACTATACCGAACCTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	AGTTTTTTTATTTTTTATGTTTATAGGATTAGTCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTAAGAAGTGACCTTATGAACTCTGCAATGCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTGGGTTAACAAACACACCGATTACTGCAACTACAA
ATTTACATTCCACTAGTTAAGATAAAAC	GGATTATAATATAAATATCCCGGAAAATTCATTAGG
ATTTACATTCCACTAGTTAAGATAAAAC	CTAGAGAATTATTAAAGGTATGTACATTAACTAGCAT
ATTTACATTCCACTAGTTAAGATAAAAC	ACTCAAATATTCCACATGTTGATATGATATCCCATGA
ATTTACATTCCACTAGTTAAGATAAAAC	AATATAGTTTGGTCTTTAGTATTTAATTCCAAACTTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTGCTAATTCTTCTCCATATTTAATATGTGGATATTCTT
ATTTACATTCCACTAGTTAAGATAAAAC	CTGAGGTATCTAAAACACATTTCTTTTACAAAATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCCTTTAATTCTACCATTTCAACCTCTTCTTTTAGA
ATTTACATTCCACTAGTTAAGATAAAAC	TTTATCTATTTGTTGCTGACTACGTTTTTGGAGTTAT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTTTCTCTGATGAAGAAATCTTGATACAGAAACTG
ATTTACATTCCACTAGTTAAGATAAAAC	CTTCTAAATACTCTTTTCCTTTTCTTAATAAGTTACT
ATTTACATTCCACTAGTTAAGATAAAAC	AGCATGACCATACTCTAATAAATGAGTTAATCTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCCATCTCCATTTTCTCTTCATATTTAACTCCTTT
ATTTACATTCCACTAGTTAAGATAAAAC

>CP034358|5|2|2545844-2551817|CRT
ATTTACATTCCACTAGTTAAAATAAAAC	ACTTCCTCCATATTTTCCCATCGTTTTTGAACTAA
ATTTACATTCCACTAGTTAAAATAAAAC	GTGAATTACCCTCTATTATTTTGCAAGAAATCCAAT
ATTTACATTCCACTAGTTAAGATAAAAC	AGATGGAGGTTATTGTTCAATGGTTGTTACTCAAAC
ATTTACATTCCACTAGTTAAGATAAAAC	GTGTCAATCACCCTGAAACAGGTCAAGTGATAACAAC
ATTTACATTCCACTAGTTAAGATAAAAC	AATGAATTAATAAAAGAAAAAGGAGATATTTAAATGA
ATTTACATTCCACTAGTTAAGATAAAAC	GGAATATAAAATGGGAATAAGAGAAAATTATTTTAA
ATTTACATTCCACTAGTTAAGATAAAAC	GGACGTTGAAACACACTTTAATCAGTTCAAAGTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GATTTAATGGAAGAAATTATTGTTGATTCATTGAATA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCTTAGACAATTTTATATAGAAACTTTAGGAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACGTTCATAAAATATCACCTCAATCAAAGTAACTAG
ATTTACATTCCACTAGTTAAGATAAAAC	CGAGTTTATTCGACAAATCAGGCAACATCGTCACGA
ATTTACATTCCACTAGTTAAGATAAAAC	TAACGTTAAAGATAATATAACTTGCATAGCGAATTTGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTGCAAAGTGATTTATGAGCCACGCTCCGCTATAGA
ATTTACATTCCACTAGTTAAGATAAAAC	CAATGCAACAAAGAAATAAACAACTGTCACAAGCTC
ATTTACATTCCACTAGTTAAGATAAAAC	TACCCGTTTCACAGAACACAGAACTTAGCATGAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AATCTAAAACATATAACATTCTAATTTGTTTCTTTT
ATTTACATTCCACTAGTTAAGATAAAAC	AATACATACCGGCTGGATAGTTACCAACTCCATTGAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCTATCAACAATAATCAATGAACATTCATTAACAGA
ATTTACATTCCACTAGTTAAGATAAAAC	CAAGAAGTTAAAAAAGAAAATAGAAGAAATGGAGAAGGA
ATTTACATTCCACTAGTTAAGATAAAAC	ATAGCGATGACGACATGGAAGGTGATGAACTTGATTAAG
ATTTACATTCCACTAGTTAAGATAAAAC	AGTCAAAACCACATTCTATTATATAAGTTTCTTTATT
ATTTACATTCCACTAGTTAAGATAAAAC	TCATATTTTTCCCTCATTACTATTACCTCCTACAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTATACTAGATCCACTTATTGAACTTCTACATGATGA
ATTTACATTCCACTAGTTAAGATAAAAC	GCTTAGAACTTTCTGCCCATCTTACCCCTAAATAAA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGCCAGTAGCAATATTATTTAGAGAAACTTTTAGTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GCGAGCAGCGTACTTAACTTGATTTTATCTACTTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	ATGTAAGCTTATCTATGCTAGTAAATAAATCTCCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTGTAGCCTCTAGCTTATTTGACAACTCTTCCATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TAGCTTTTGCCTTGATTAATGTATTCCATTTAGTAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GAATGCTCGTTGATTATTACTGATAAGAATCCCAA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTAATTTGTGGTATTGCTCCGTGGACTTTTCTCGT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCCTCTTCAAATTTAGGTGTTTTATTGTAACCACA
ATTTACATTCCACTAGTTAAGATAAAAC	CCACAATTGGAAGCATTATAGTAATAAGGATAAACCT
ATTTACATTCCACTAGTTAAGATAAAAC	GTTACTTAAGTCTGGAACGACTCCATCAGCACCTCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTAAAAATCTCCCCAGCCCATATCCAAGGTTCTATG
ATTTACATTCCACTAGTTAAGATAAAAC	AGACAACGTTGTTGTTCTGAACAATGTGATAAGTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACTGGGGTCCTGTTAAGGAAAGTCAAGTTGAAG
ATTTACATTCCACTAGTTAAGATAAAAC	CATCATCCTCACTCATGAAGTAATAGTACATACCCGC
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAGATAATCTATTGCCCTAGTGGTTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	AAATACAGACAACTATACGAGTCAGAATTAGCATGTA
ATTTACATTCCACTAGTTAAGATAAAAC	GCAATCGCTCCTGGATATTTTAATAGTATTAGAACC
ATTTACATTCCACTAGTTAAGATAAAAC	TTCTCTAATAATCTTCATTGCTTTTTTCAATCTCTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTAAAACAAGAGTTAGAAAACGTGGATTGGAATACA
ATTTACATTCCACTAGTTAAGATAAAAC	ACCAATTAACCAAAATAGGGATATGGGTTCAGCTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCAGCCACAAGTTCAGCAACAAGCACCACAAAGTG
ATTTACATTCCACTAGTTAAGATAAAAC	TAAAGACTTGAACAAGGAGACTATCAAGCTAATTCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TAAACTATCTAGCGACTTCCCTAATGGGACAGCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCAAAACGTTGAGGGAGATGGTTCCAACATCATCAA
ATTTACATTCCACTAGTTAAGATAAAAC	CCATTAATACATTTCTCCTTTCAAAATATCTTTAATCT
ATTTACATTCCACTAGTTAAGATAAAAC	ATTAAAGAATGGGGATATCCTGTAATTAGTAAAGATG
ATTTACATTCCACTAGTTAAGATAAAAC	CTCGCTTAGAGGTTTAATGTCTTTATATCCTACAACAG
ATTTACATTCCACTAGTTAAGATAAAAC	CAGTTCCAGCCCATACTCTGTTTGCATTCTTTGTTTGC
ATTTACATTCCACTAGTTAAGATAAAAC	TTTCTAATATTTTCTTCTCTCTATGCTTGATTCCACT
ATTTACATTCCACTAGTTAAGATAAAAC	CCACAATTGGAAGCATTATAGTAATAAGGATAAACCT
ATTTACATTCCACTAGTTAAGATAAAAC	GTTACTTAAGTCTGGAACGACTCCATCAGCACCTCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTAAAAATCTCCCCAGCCCATATCCAAGGTTCTATG
ATTTACATTCCACTAGTTAAGATAAAAC	AGACAACGTTGTTGTTCTGAACAATGTGATAAGTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACTGGGGTCCTGTTAAGGAAAGTCAAGTTGAAG
ATTTACATTCCACTAGTTAAGATAAAAC	CATCATCCTCACTCATGAAGTAATAGTACATACCCGC
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAGATAATCTATTGCCCTAGTGGTTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	AAATACAGACAACTATACGAGTCAGAATTAGCATGTA
ATTTACATTCCACTAGTTAAGATAAAAC	GCAATCGCTCCTGGATATTTTAATAGTATTAGAACC
ATTTACATTCCACTAGTTAAGATAAAAC	TTCTCTAATAATCTTCATTGCTTTTTTCAATCTCTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTAAAACAAGAGTTAGAAAACGTGGATTGGAATACA
ATTTACATTCCACTAGTTAAGATAAAAC	ACCAATTAACCAAAATAGGGATATGGGTTCAGCTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCAGCCACAAGTTCAGCAACAAGCACCACAAAGTG
ATTTACATTCCACTAGTTAAGATAAAAC	CTATTGTTAAAGTTCCGTCCCCACCGTCATATGCGGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTGTTAAGTTTGAATAGTATCTGAACAATCTATGAAC
ATTTACATTCCACTAGTTAAGATAAAAC	TGACCAGCAACCTAATACATAGTTTCCTAATCTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAAGTAGTCTATTGCTCTAGTAGTTATGT
ATTTACATTCCACTAGTTAAGATAAAAC	TAACTTCTCGACTTAATGATATTTCTATAAAAGTCGT
ATTTACATTCCACTAGTTAAGATAAAAC	CCTCCATTATGCACACCACTCAATGTGTATAATGCAAAT
AATTACATTCCACTAGTTAAGATAAAAC	AATATAAAGAGTTAATAATAACAAACTACTAATTTAC
ATTTACATTCCACTAGTTAAGATAAAAC	TATGATATGCTAGAAGGTGAAGTAAAGTTTAATATA
ATTTACATTCCACTAGTTAAGATAAAAC	AATGCAATTCACTCTTGTTATCTAACCCCGCTCATCT
ATTTACATTCCACTAGTTAAGATAAAAC	CAGGTTGACCTGTCCCACTGTTATTACTACTATCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	TCTTTACCATTTAGTACTTACTATACCGAACCTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	AGTTTTTTTATTTTTTATGTTTATAGGATTAGTCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTAAGAAGTGACCTTATGAACTCTGCAATGCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTGGGTTAACAAACACACCGATTACTGCAACTACAA
ATTTACATTCCACTAGTTAAGATAAAAC	GGATTATAATATAAATATCCCGGAAAATTCATTAGG
ATTTACATTCCACTAGTTAAGATAAAAC	CTAGAGAATTATTAAAGGTATGTACATTAACTAGCAT
ATTTACATTCCACTAGTTAAGATAAAAC	ACTCAAATATTCCACATGTTGATATGATATCCCATGA
ATTTACATTCCACTAGTTAAGATAAAAC	AATATAGTTTGGTCTTTAGTATTTAATTCCAAACTTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTGCTAATTCTTCTCCATATTTAATATGTGGATATTCTT
ATTTACATTCCACTAGTTAAGATAAAAC	CTGAGGTATCTAAAACACATTTCTTTTACAAAATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCCTTTAATTCTACCATTTCAACCTCTTCTTTTAGA
ATTTACATTCCACTAGTTAAGATAAAAC	TTTATCTATTTGTTGCTGACTACGTTTTTGGAGTTAT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTTTCTCTGATGAAGAAATCTTGATACAGAAACTG
ATTTACATTCCACTAGTTAAGATAAAAC	CTTCTAAATACTCTTTTCCTTTTCTTAATAAGTTACT
ATTTACATTCCACTAGTTAAGATAAAAC	AGCATGACCATACTCTAATAAATGAGTTAATCTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCCATCTCCATTTTCTCTTCATATTTAACTCCTTT
ATTTACATTCCACTAGTTAAGATAAAAC

>CP034358|5|3|2550562-2551817|PILER-CR
	ACTTCCTCCATATTTTCCCATCGTTTTTGAACTAA
ATTTACATTCCACTAGTTAAAATAAAAC	GTGAATTACCCTCTATTATTTTGCAAGAAATCCAAT
ATTTACATTCCACTAGTTAAGATAAAAC	AGATGGAGGTTATTGTTCAATGGTTGTTACTCAAAC
ATTTACATTCCACTAGTTAAGATAAAAC	GTGTCAATCACCCTGAAACAGGTCAAGTGATAACAAC
ATTTACATTCCACTAGTTAAGATAAAAC	AATGAATTAATAAAAGAAAAAGGAGATATTTAAATGA
ATTTACATTCCACTAGTTAAGATAAAAC	GGAATATAAAATGGGAATAAGAGAAAATTATTTTAA
ATTTACATTCCACTAGTTAAGATAAAAC	GGACGTTGAAACACACTTTAATCAGTTCAAAGTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GATTTAATGGAAGAAATTATTGTTGATTCATTGAATA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCTTAGACAATTTTATATAGAAACTTTAGGAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACGTTCATAAAATATCACCTCAATCAAAGTAACTAG
ATTTACATTCCACTAGTTAAGATAAAAC	CGAGTTTATTCGACAAATCAGGCAACATCGTCACGA
ATTTACATTCCACTAGTTAAGATAAAAC	TAACGTTAAAGATAATATAACTTGCATAGCGAATTTGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTGCAAAGTGATTTATGAGCCACGCTCCGCTATAGA
ATTTACATTCCACTAGTTAAGATAAAAC	CAATGCAACAAAGAAATAAACAACTGTCACAAGCTC
ATTTACATTCCACTAGTTAAGATAAAAC	TACCCGTTTCACAGAACACAGAACTTAGCATGAAGA
ATTTACATTCCACTAGTTAAGATAAAAC	AATCTAAAACATATAACATTCTAATTTGTTTCTTTT
ATTTACATTCCACTAGTTAAGATAAAAC	AATACATACCGGCTGGATAGTTACCAACTCCATTGAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCTATCAACAATAATCAATGAACATTCATTAACAGA
ATTTACATTCCACTAGTTAAGATAAAAC	CAAGAAGTTAAAAAAGAAAATAGAAGAAATGGAGAAGGA
ATTTACATTCCACTAGTTAAGATAAAAC	ATAGCGATGACGACATGGAAGGTGATGAACTTGATTAAG
ATTTACATTCCACTAGTTAAGATAAAAC	AGTCAAAACCACATTCTATTATATAAGTTTCTTTATT
ATTTACATTCCACTAGTTAAGATAAAAC	TCATATTTTTCCCTCATTACTATTACCTCCTACAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTATACTAGATCCACTTATTGAACTTCTACATGATGA
ATTTACATTCCACTAGTTAAGATAAAAC	GCTTAGAACTTTCTGCCCATCTTACCCCTAAATAAA
ATTTACATTCCACTAGTTAAGATAAAAC	AAGCCAGTAGCAATATTATTTAGAGAAACTTTTAGTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GCGAGCAGCGTACTTAACTTGATTTTATCTACTTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	ATGTAAGCTTATCTATGCTAGTAAATAAATCTCCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTGTAGCCTCTAGCTTATTTGACAACTCTTCCATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TAGCTTTTGCCTTGATTAATGTATTCCATTTAGTAAT
ATTTACATTCCACTAGTTAAGATAAAAC	GAATGCTCGTTGATTATTACTGATAAGAATCCCAA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTAATTTGTGGTATTGCTCCGTGGACTTTTCTCGT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCCTCTTCAAATTTAGGTGTTTTATTGTAACCACA
ATTTACATTCCACTAGTTAAGATAAAAC	CCACAATTGGAAGCATTATAGTAATAAGGATAAACCT
ATTTACATTCCACTAGTTAAGATAAAAC	GTTACTTAAGTCTGGAACGACTCCATCAGCACCTCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTAAAAATCTCCCCAGCCCATATCCAAGGTTCTATG
ATTTACATTCCACTAGTTAAGATAAAAC	AGACAACGTTGTTGTTCTGAACAATGTGATAAGTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACTGGGGTCCTGTTAAGGAAAGTCAAGTTGAAG
ATTTACATTCCACTAGTTAAGATAAAAC	CATCATCCTCACTCATGAAGTAATAGTACATACCCGC
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAGATAATCTATTGCCCTAGTGGTTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	AAATACAGACAACTATACGAGTCAGAATTAGCATGTA
ATTTACATTCCACTAGTTAAGATAAAAC	GCAATCGCTCCTGGATATTTTAATAGTATTAGAACC
ATTTACATTCCACTAGTTAAGATAAAAC	TTCTCTAATAATCTTCATTGCTTTTTTCAATCTCTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTAAAACAAGAGTTAGAAAACGTGGATTGGAATACA
ATTTACATTCCACTAGTTAAGATAAAAC	ACCAATTAACCAAAATAGGGATATGGGTTCAGCTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCAGCCACAAGTTCAGCAACAAGCACCACAAAGTG
ATTTACATTCCACTAGTTAAGATAAAAC	TAAAGACTTGAACAAGGAGACTATCAAGCTAATTCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TAAACTATCTAGCGACTTCCCTAATGGGACAGCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	GAGCAAAACGTTGAGGGAGATGGTTCCAACATCATCAA
ATTTACATTCCACTAGTTAAGATAAAAC	CCATTAATACATTTCTCCTTTCAAAATATCTTTAATCT
ATTTACATTCCACTAGTTAAGATAAAAC	ATTAAAGAATGGGGATATCCTGTAATTAGTAAAGATG
ATTTACATTCCACTAGTTAAGATAAAAC	CTCGCTTAGAGGTTTAATGTCTTTATATCCTACAACAG
ATTTACATTCCACTAGTTAAGATAAAAC	CAGTTCCAGCCCATACTCTGTTTGCATTCTTTGTTTGC
ATTTACATTCCACTAGTTAAGATAAAAC	TTTCTAATATTTTCTTCTCTCTATGCTTGATTCCACT
ATTTACATTCCACTAGTTAAGATAAAAC	CCACAATTGGAAGCATTATAGTAATAAGGATAAACCT
ATTTACATTCCACTAGTTAAGATAAAAC	GTTACTTAAGTCTGGAACGACTCCATCAGCACCTCT
ATTTACATTCCACTAGTTAAGATAAAAC	CTAAAAATCTCCCCAGCCCATATCCAAGGTTCTATG
ATTTACATTCCACTAGTTAAGATAAAAC	AGACAACGTTGTTGTTCTGAACAATGTGATAAGTAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTACTGGGGTCCTGTTAAGGAAAGTCAAGTTGAAG
ATTTACATTCCACTAGTTAAGATAAAAC	CATCATCCTCACTCATGAAGTAATAGTACATACCCGC
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAGATAATCTATTGCCCTAGTGGTTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	AAATACAGACAACTATACGAGTCAGAATTAGCATGTA
ATTTACATTCCACTAGTTAAGATAAAAC	GCAATCGCTCCTGGATATTTTAATAGTATTAGAACC
ATTTACATTCCACTAGTTAAGATAAAAC	TTCTCTAATAATCTTCATTGCTTTTTTCAATCTCTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTAAAACAAGAGTTAGAAAACGTGGATTGGAATACA
ATTTACATTCCACTAGTTAAGATAAAAC	ACCAATTAACCAAAATAGGGATATGGGTTCAGCTTT
ATTTACATTCCACTAGTTAAGATAAAAC	GCTCAGCCACAAGTTCAGCAACAAGCACCACAAAGTG
ATTTACATTCCACTAGTTAAGATAAAAC	CTATTGTTAAAGTTCCGTCCCCACCGTCATATGCGGT
ATTTACATTCCACTAGTTAAGATAAAAC	TTGTTAAGTTTGAATAGTATCTGAACAATCTATGAAC
ATTTACATTCCACTAGTTAAGATAAAAC	TGACCAGCAACCTAATACATAGTTTCCTAATCTGA
ATTTACATTCCACTAGTTAAGATAAAAC	GTTCCATATAAGTAGTCTATTGCTCTAGTAGTTATGT
ATTTACATTCCACTAGTTAAGATAAAAC	TAACTTCTCGACTTAATGATATTTCTATAAAAGTCGT
ATTTACATTCCACTAGTTAAGATAAAACCCTCCATTATGCACACCACTCAATGTGTATAATGCAAATAATTACATTCCACTAGTTAAGATAAAACAATATAAAGAGTTAATAATAACAAACTACTAATTTACATTTACATTCCACTAGTTAAGATAAAAC	TATGATATGCTAGAAGGTGAAGTAAAGTTTAATATA
ATTTACATTCCACTAGTTAAGATAAAAC	AATGCAATTCACTCTTGTTATCTAACCCCGCTCATCT
ATTTACATTCCACTAGTTAAGATAAAAC	CAGGTTGACCTGTCCCACTGTTATTACTACTATCTAC
ATTTACATTCCACTAGTTAAGATAAAAC	TCTTTACCATTTAGTACTTACTATACCGAACCTTGA
ATTTACATTCCACTAGTTAAGATAAAAC	AGTTTTTTTATTTTTTATGTTTATAGGATTAGTCAC
ATTTACATTCCACTAGTTAAGATAAAAC	AAGTAAGAAGTGACCTTATGAACTCTGCAATGCAAA
ATTTACATTCCACTAGTTAAGATAAAAC	TTGGGTTAACAAACACACCGATTACTGCAACTACAA
ATTTACATTCCACTAGTTAAGATAAAAC	GGATTATAATATAAATATCCCGGAAAATTCATTAGG
ATTTACATTCCACTAGTTAAGATAAAAC	CTAGAGAATTATTAAAGGTATGTACATTAACTAGCAT
ATTTACATTCCACTAGTTAAGATAAAAC	ACTCAAATATTCCACATGTTGATATGATATCCCATGA
ATTTACATTCCACTAGTTAAGATAAAAC	AATATAGTTTGGTCTTTAGTATTTAATTCCAAACTTA
ATTTACATTCCACTAGTTAAGATAAAAC	TTGCTAATTCTTCTCCATATTTAATATGTGGATATTCTT
ATTTACATTCCACTAGTTAAGATAAAAC	CTGAGGTATCTAAAACACATTTCTTTTACAAAATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCCTTTAATTCTACCATTTCAACCTCTTCTTTTAGA
ATTTACATTCCACTAGTTAAGATAAAAC	TTTATCTATTTGTTGCTGACTACGTTTTTGGAGTTAT
ATTTACATTCCACTAGTTAAGATAAAAC	CTTTTCTCTGATGAAGAAATCTTGATACAGAAACTG
ATTTACATTCCACTAGTTAAGATAAAAC	CTTCTAAATACTCTTTTCCTTTTCTTAATAAGTTACT
ATTTACATTCCACTAGTTAAGATAAAAC	AGCATGACCATACTCTAATAAATGAGTTAATCTATAT
ATTTACATTCCACTAGTTAAGATAAAAC	TCCCATCTCCATTTTCTCTTCATATTTAACTCCTTT
ATTTACATTCCACTAGTTAAGATAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP034358.1\|QAS61418.1\|2537276_2538968_-\|dihydrolipoyl-dehydrogenase	unknown	unknown	gnl\|CDD\|273568
CP034358.1\|QAS61423.1\|2544570_2544963_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222853
CP034358.1\|QAS61428.1\|2556821_2557697_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	cas7	cd09687_cas7_CAS-I-B	gnl\|CDD\|274215
CP034358.1\|QAS61429.1\|2557696_2559388_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	cas8b2	cd09665_cas8b2_CAS-I-B	gnl\|CDD\|187796
CP034358.1\|QAS61424.1\|2545212_2545497_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS61425.1\|2551998_2552262_-\|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP034358.1\|QAS61420.1\|2539475_2539919_-\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP034358.1\|QAS61434.1\|2565870_2566935_-\|polysaccharide-deacetylase	unknown	unknown	gnl\|CDD\|200569
CP034358.1\|QAS62213.1\|2544311_2544371_+\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS61433.1\|2564555_2565776_-\|peptidase-T	unknown	unknown	gnl\|CDD\|235484
CP034358.1\|QAS61431.1\|2560258_2561197_-\|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|379100
CP034358.1\|QAS61427.1\|2556077_2556812_-\|type-I-B-CRISPR-associated-protein-Cas5	cas5	cd09658_cas5_CAS-I-B	gnl\|CDD\|187789
CP034358.1\|QAS61417.1\|2536347_2537283_-\|lipoate--protein-ligase	unknown	unknown	gnl\|CDD\|179655
CP034358.1\|QAS61419.1\|2539050_2539404_-\|carboxymuconolactone-decarboxylase-family-protein	unknown	unknown	gnl\|CDD\|223672
CP034358.1\|QAS61422.1\|2542656_2543787_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|227628
CP034358.1\|QAS61426.1\|2552263_2553247_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	cas1	cd09722_cas1_CAS-I-B	gnl\|CDD\|274695
CP034358.1\|QAS61432.1\|2561608_2564194_-\|DUF4091-domain-containing-protein	unknown	unknown	gnl\|CDD\|379121
CP034358.1\|QAS61416.1\|2534626_2536303_+\|DUF2207-domain-containing-protein	unknown	unknown	gnl\|CDD\|378333
CP034358.1\|QAS61421.1\|2541931_2542342_-\|UDP-N-acetylglucosamine-pyrophosphorylase	unknown	unknown	unknown
CP034358.1\|QAS61430.1\|2559399_2560134_-\|CRISPR-associated-endoribonuclease-Cas6	cas6	pfam01881_cas6_CAS-I:CAS-III	gnl\|CDD\|187783

Protein	Function_ID	Function_description	E-value
CP034358.1\|QAS61418.1\|2537276_2538968_-\|dihydrolipoyl-dehydrogenase	gnl\|CDD\|273568	TIGR01350, Dihydrolipoyl_dehydrogenase, dihydrolipoamide dehydrogenase. This model describes dihydrolipoamide dehydrogenase, a flavoprotein that acts in a number of ways. It is the E3 component of dehydrogenase complexes for pyruvate, 2-oxoglutarate, 2-oxoisovalerate, and acetoin. It can also serve as the L protein of the glycine cleavage system. This family includes a few members known to have distinct functions (ferric leghemoglobin reductase and NADH:ferredoxin oxidoreductase) but that may be predicted by homology to act as dihydrolipoamide dehydrogenase as well. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.	0
CP034358.1\|QAS61423.1\|2544570_2544963_+\|hypothetical-protein	gnl\|CDD\|222853	PHA02517, PHA02517, putative transposase OrfB; Reviewed.	3.26524e-15
CP034358.1\|QAS61428.1\|2556821_2557697_-\|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR	gnl\|CDD\|274215	TIGR02585, conserved_protein, CRISPR-associated protein Cas7/Cst2/DevR, subtype I-B/TNEAP. CRISPR is a term for Clustered Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR associated) proteins. This clade is a member of the DevR family (TIGR01875) and includes the DevR protein of Myxococcus xanthus, a protein whose expression appears to be regulated through a number of means, including both location and autorepression; DevR mutants are incapable of fruiting body development.	1.49595e-57
CP034358.1\|QAS61429.1\|2557696_2559388_-\|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1	gnl\|CDD\|187796	cd09665, Cas8a1_I-A, CRISPR/Cas system-associated protein Cas8a1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Large proteins, some contain Zn-finger domain; signature gene for I-A subtype; also known as CXXC_CXXC family.	8.21612e-14
CP034358.1\|QAS61425.1\|2551998_2552262_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	1.3328e-25
CP034358.1\|QAS61420.1\|2539475_2539919_-\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	5.11007e-19
CP034358.1\|QAS61434.1\|2565870_2566935_-\|polysaccharide-deacetylase	gnl\|CDD\|200569	cd10944, CE4_SmPgdA_like, Catalytic NodB homology domain of Streptococcus mutans polysaccharide deacetylase PgdA, Bacillus subtilis YheN, and similar proteins. This family is represented by a putative polysaccharide deacetylase PgdA from the oral pathogen Streptococcus mutans (SmPgdA) and Bacillus subtilis YheN (BsYheN), which are members of the carbohydrate esterase 4 (CE4) superfamily. SmPgdA is an extracellular metal-dependent polysaccharide deacetylase with a typical CE4 fold, with metal bound to a His-His-Asp triad. It possesses de-N-acetylase activity toward a hexamer of chitooligosaccharide N-acetylglucosamine, but not shorter chitooligosaccharides or a synthetic peptidoglycan tetrasaccharide. SmPgdA plays a role in tuning cell surface properties and in interactions with (salivary) agglutinin, an essential component of the innate immune system, most likely through deacetylation of an as-yet-unidentified polysaccharide. SmPgdA shows significant homology to the catalytic domains of peptidoglycan deacetylases from Streptococcus pneumoniae (SpPgdA) and Listeria monocytogenes (LmPgdA), both of which are involved in the bacterial defense mechanism against human mucosal lysozyme. The Bacillus subtilis genome contains six polysaccharide deacetylase gene homologs: pdaA, pdaB (previously known as ybaN), yheN, yjeA, yxkH and ylxY. The biological function of BsYheN is still unknown. This family also includes many uncharacterized polysaccharide deacetylases mainly found in bacteria.	4.55974e-79
CP034358.1\|QAS61433.1\|2564555_2565776_-\|peptidase-T	gnl\|CDD\|235484	PRK05469, PRK05469, tripeptide aminopeptidase PepT.	0
CP034358.1\|QAS61431.1\|2560258_2561197_-\|WYL-domain-containing-protein	gnl\|CDD\|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.59056e-26
CP034358.1\|QAS61427.1\|2556077_2556812_-\|type-I-B-CRISPR-associated-protein-Cas5	gnl\|CDD\|187789	cd09658, Cas5_I-B, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	2.51983e-23
CP034358.1\|QAS61417.1\|2536347_2537283_-\|lipoate--protein-ligase	gnl\|CDD\|179655	PRK03822, lplA, lipoate-protein ligase A; Provisional.	2.2733e-75
CP034358.1\|QAS61419.1\|2539050_2539404_-\|carboxymuconolactone-decarboxylase-family-protein	gnl\|CDD\|223672	COG0599, COG0599, Uncharacterized homolog of gamma-carboxymuconolactone decarboxylase subunit [Function unknown].	5.589e-25
CP034358.1\|QAS61422.1\|2542656_2543787_+\|hypothetical-protein	gnl\|CDD\|227628	COG5316, COG5316, Uncharacterized conserved protein [Function unknown].	2.22121e-27
CP034358.1\|QAS61432.1\|2561608_2564194_-\|DUF4091-domain-containing-protein	gnl\|CDD\|379121	pfam13320, DUF4091, Domain of unknown function (DUF4091). This presumed domain is functionally uncharacterized. This domain family is found in bacteria, archaea and eukaryotes, and is approximately 70 amino acids in length. There is a single completely conserved residue G that may be functionally important.	4.30147e-19
CP034358.1\|QAS61416.1\|2534626_2536303_+\|DUF2207-domain-containing-protein	gnl\|CDD\|378333	pfam09972, DUF2207, Predicted membrane protein (DUF2207). This domain, found in various hypothetical bacterial proteins, has no known function.	4.65653e-33
CP034358.1\|QAS61426.1\|2552263_2553247_-\|type-I-B-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274695	TIGR03641, cas1_HMARI, CRISPR-associated endonuclease Cas1, subtype I-B/HMARI/TNEAP. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes Cas1 subgroup that includes Cas1 proteins of the related HMARI and TNEAP subtypes of CRISPR/Cas system.	5.55785e-156
CP034358.1\|QAS61430.1\|2559399_2560134_-\|CRISPR-associated-endoribonuclease-Cas6	gnl\|CDD\|187783	cd09652, Cas6-I-III, CRISPR/Cas system-associated RAMP superfamily protein Cas6. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6 is an endoribonuclease that generates crRNAs, predicted subunit of Cascade complex; RAMP superfamily protein; Possesses double RRM/ferredoxin fold.	7.09397e-25

>CP034358.1|QAS61424.1|2545212_2545497_-|hypothetical-protein
MYSFILEVLFIMVPLAISLIIYMKIDKKYAITNIISLKLGIKREWMAFFCFCFTILIMLTINMINEYVINILPIVYFILGGIFTGMVVGVKYSK
>CP034358.1|QAS61423.1|2544570_2544963_+|hypothetical-protein
MCTVLGVARSTYYKSFDKIKSVREIENNEELKAAIIRIYEDNKGIYGAPMIHHILGTEGLELSLKRVKRLILHTGLGSQYTSNYLKELCKEFNITQSFSKKDCPYDNACIESFHSSIKKEEIYRNTYYTF
>CP034358.1|QAS62213.1|2544311_2544371_+|hypothetical-protein
MSLAELSNEYGIAKSTING
>CP034358.1|QAS61422.1|2542656_2543787_+|hypothetical-protein
MFIKSCNNQNKELTLSIYNNNVALVNELRDLFKGKVINTIEYCDISKFIYENSVIIENVEVSQLNFNYKCCNNDKNKSENSSCNDCLSSFVNSIDIEVDSINSKNIRVYYLTAGVKWDSSYTLILNENKLSMQSWINISNKSGISYNHANLKCISGEVNFDSLSPIPYSKTSYANSEAVENPKLQPLDDYYIYNLSGKYILENNSTKRIKNFSAENIEYTKLYDFGYYNTNADILIKLNNTEDNNLGIPMPSGTVNIYASLNDSLQFLGSDSIKNTPINQELNLNIGKAFDITCERKIINYQKYDNYEFKEIELIINNSKDEDVPIKICYPIFAPWEITSTTDNYEKDSNGNPCFKVKVSANSKKRILFTYKTKIS
>CP034358.1|QAS61421.1|2541931_2542342_-|UDP-N-acetylglucosamine-pyrophosphorylase
MKYELTIYELGKLLKNIDSKYNISLLSKIKLSGGWMTMTGEISVIDVPTEAILLKGNNIITLKLKNNNENGSEIKITGLKDSKFVIDISATKYKEIKPGMLNLDVIKVNNNQCKLRIDEDMIFTIDTSVDKVIKCL
>CP034358.1|QAS61420.1|2539475_2539919_-|MarR-family-transcriptional-regulator
MFRLEECVGFITSTASKELSDEFNRRLLLKGSTRVQWIALYYIGNEKGISQKVLADKINVKESTIVRLIDRMEKEGIVKREKEETDRRVTNIFLTEKGENLKEELLPLGEKFSDDITKGIKQEHIDIFNSVLRKMVLNINMNVDNIT
>CP034358.1|QAS61419.1|2539050_2539404_-|carboxymuconolactone-decarboxylase-family-protein
MKKDPRQMLNDFMQGLNSVGETNGENVQAFMNLLGATYSEGKLTTKTKELISVAIAAYNRCEYCIVFHVYKALEAGANREEIMEAAMVAVAFGGGPSMAYSTTLLKDSIDEFEKDFK
>CP034358.1|QAS61418.1|2537276_2538968_-|dihydrolipoyl-dehydrogenase
MDIKLESLTGHDKSAKVGKINVSIGDMVEINTVLLQVETGKGNSPIKAKGSYKIKEIKVNEGEEVKIGDTLIKVEVLEENNSNKNNFNYFGNMIKGKDEKIETDLIVIGAGPGGYVSAIYAAKRGLKVVSIEKENLGGTCLNVGCIPTKALVKSSEVYYNLVNCNEFGLECENPKVNMGKIIDRKDKIKNTLVSGIDYLLNKNEVKQIKGEASFKDKRTIEVKSGRDKYSITGKNIIIATGSKISKINIKGIEEPFVLNSTTALSSKEKPKSITIIGGGVIGMEFAFMYSNLGVKVNVVEFADRLLTMVDSEISEEIKNIAEKKGITIFNSSKVSRIEKTENGEALVIFNKGEEEKYIVSEKVLVAIGREPNIEGLEIENANIKLNENLRGIEVSETLETNIDGIYAIGDVNNIMQLAHIASHQGIVAVDNILGENKTVDYSAVPNVIFTYPEIASVGLTEDQAKNNDIKYKTSKFYFQGNGKALTMGENEGFIKLVKDIEKDKIIGASIIGPDASSLVSTLTLIIKNNIKEDGIIETIFAHPTTGEVIHEAALELGIGGLHC
>CP034358.1|QAS61417.1|2536347_2537283_-|lipoate--protein-ligase
MLKNIIVISKSTDPYCNLAMEEYIFNNIKKNEVIFYLWQNHKTVVIGRNQNPYIECDVDYIEGNGAKIARRMSGGGTVYHDLGNLNFTFVTSKENHNIEKQILVIRKAIEKFGLSVDKSGRNDLTINNKKFSGHAFYEDDNKMFHHGTIMIDVDKLELNNILKPSKIKLKSKGIDSVKSRVINLKECNNDITLNDVFKNLIESFKEVYGEVYSIRETIGKEVKGNLLEKYKNHKWVYGESPEFNVNLETPTDIGNIQILMDIKDNVVKKVRVYSDSLNQISFSDLEQLIVKQEFNRENILKTVYYFLESFK
>CP034358.1|QAS61416.1|2534626_2536303_+|DUF2207-domain-containing-protein
MKKLFSILTIIFIFAFPNVVSATTKEYYIDNVNIQAEILQNGDVNVTENLGYDFNGDFNGIFRNLKLNNTLGYKISEVYSIDENGHKQLISEADNEADYTYKLIDNGDSIQIKVFCPSSNEKKSFFFNYTIEKAAKKYSDLSQLYWNFYTVENVSSIKEGSLNLSLNNSNFDSSVFHYDVFGDGDFETTYNDKSVSVNFKNLTSLLGIKLNFQKEFLNDIPEINSTAPTEVESQYQSSTDLNGKCIAFIALFISLGLGGIGFGFFINKLKFKKELEKYRSKFTFIPNEIYVEPPSSTSPALIDLLMNEKVVSKEILTPTLFYLVKKGYYTISESTYYSGKNKSNNLKEDLIFTRVHSKGLPKENHLVFLIDWFSMYEVNGSFSLQKIKKRIQSQSEAQKFINKLNEWIAEVFEDADSYTFFKTIGNKRILRNKYYNEKLKWLSYKNYLINSKENLEHKNLTNIDDPLIYATALDIDYDDIKVILNSLSKDIKRNSSEIPEFSYLYCNNYLFYSLLVNDINGDAHINIDNSPNSTSSSFGGFSSGSGFTGGGGGGSGAF
>CP034358.1|QAS61425.1|2551998_2552262_-|CRISPR-associated-endonuclease-Cas2
MFVIITYDVNEKRVNRVRKILKKYVTWTQNSVFEGEITEGKLTKCLAEVKKNLVSAEDSLYIYRVSYSKNITKDVVGVEKNLDELFI
>CP034358.1|QAS61426.1|2552263_2553247_-|type-I-B-CRISPR-associated-endonuclease-Cas1
MGKDYYVFSPGRIKRKDNTIYFINTDEEKRGIPIESIERIHFFSEVDLNSKFINYISQYKIILNFYNYYGFYSGSYYPRKKNVSGFLLVEQAVAYKDLESRLFLAKAFIDSAIHHILRNMRRYDKVPNEYFEKIAEEKERMLKANSIPEIMGAEGRIRKIYYESYQYILKNDFGFTNRNRRPPKDPLNALISFGNSVMYTAILGEVYQTQLDPTISYLHEPSTKRFSLILDISEIFKPLIIDTIIFSLINNRRLNNKDFTNEEGVCFLNDEGKKKFLTEFEKKMATSIKHRKLKRSVSYRQLIKLEGYKIIKHLINDEKYKPLKAWW
>CP034358.1|QAS61427.1|2556077_2556812_-|type-I-B-CRISPR-associated-protein-Cas5
MKRAVRLEIYQNLVNYKKPTSFQLKETYPLPPPSTVIGMVHFACDYKSYIPMNIGIQGEYNSKINDLYTRYEFAGASYEADRHNVKIDSKEQGKSYGMMRGISTAELLVDCNLVLYIQPEDDSKVEEIFEAFKNPREYISLGRREDLVQINKVEIVELKEVELEENMPLEMDSYIPVSLKNDIKSNATLYTLNKDYTLRTIKKGVETRSWNKIKVIHAVKGSTVIDEYTSLNKDLVNNSVVFLL
>CP034358.1|QAS61428.1|2556821_2557697_-|type-I-B-CRISPR-associated-protein-Cas7/Cst2/DevR
MEKKGLTASFIFEAESANYGEGVGNVTALKKISRGDGEAYSYISRQAIRYNIINQMGEDNTPLGLDGEVLQFHTDATIKDYPEIDFFGYMKTIKPIRTRSAVVRLSNAVALESFNADTEFLTNKGLLDRYNKDLKDKKIGGNIAQSEIHKSYYSYTITIDLDKVGIDENDNIEISNEEKAKRVNKLLDTILFLYRDIRGRRENLSPIFAIGGVYSIKNPFFENRLKIKNNSLRIETINSILDLNEDINNNTNIGLLKGIFNNDESIENALKPIEIGEFFKELKSKVTEYYK
>CP034358.1|QAS61429.1|2557696_2559388_-|type-I-B-CRISPR-associated-protein-Cas8b1/Cst1
MAKVRIELSDWMKNAGIVGFVKIINHRLNGSSQIDLKSNYIEFDTEILENFEEVYFEYLIYKYKEFISIEKIVSKYDYINLLLSKEVDEKDLAILNSHIKYTKERLKSASYKSAYEIINDSSYNLLEKEKQLKEIKIKKKQSISDVSEDIKLQCNLLKEIIEYLNEENVRKIIAAKNVIYDVIQGFWSDVSFLNKNNNKKNMYECYINDFINPVINYESSNLEKAKYTCFTCDNKIQKLSKPFAYDITWITKMGVDGSRKSSHYWNFQSDSNICPICNLIYSCIPAGFSVLNGKGLFINNNKSISKIISANNLILYSGKKIDELEQESYFNIIDSMEDKSVNEVNSEIENIQIVKFDKSNNSRPYTFNVLSKNKLEIISKNKKQLSALIGKSVKIAKDYYINIYSEVILRIYNGKNLFDLIALLTRLRISGEYKNSKIIYILISLNNNLMEGKYKVWYKDIDKFRDYGIKLRQIYGRNDENKIPGIAYRLQNALKVKNESRFMDTLLNAYTSRKQPIPIDFIEALKDVNKFQTIGYAFLIGLQGGLENRNQENNGNNIEEDNK
>CP034358.1|QAS61430.1|2559399_2560134_-|CRISPR-associated-endoribonuclease-Cas6
MRILVEIITEKIPLNNNRYLTLSLIKNVLEKQSPELFKAMYEDDENYNYRTKPFTYSLKLNDFKIVGDEFELKGNSTISISTPDPVLGSILYNGFLLTKEYEYNKKYKLSIGRVTLLKEKKVISNEVLFKTLSPLVIKNRRGEFLKIDNENYEKELNYIANKVLESYRGFGLKESLIFQPILMKKRVAKEKIEKFTKETNKDIFYITGYEGVFKLTGNKEDLNLIYNLGLGVRRSSGFGMLQIV
>CP034358.1|QAS61431.1|2560258_2561197_-|WYL-domain-containing-protein
MSSLGNLLKMLYILKRGQKVKVKDLAEELEVDHRQIRRYKEELSEYFDIQSITGPNGGYILCDEYFPFKDILTEKEINNLKRAIDTVSYSEEYELGKAIDKINFTILNSQSESLISEQIIPYSRPKMEIEKINKMYNEINLSILSCKEIIIVYVDNKGSLTRRAIQPHKFLRFKGEYYIIATCKLRNEIRYFKLVRIKEYILTEKRFEKMKNIDELINEYKENSIGIFGGNEIEVELEINPPMANTIKERIWVDNQEVIELEDGKILFKAIMKLGPELISWVLSMGDSVKINSSEELKRQVRIKVENIFKNL
>CP034358.1|QAS61432.1|2561608_2564194_-|DUF4091-domain-containing-protein
MRVEESKNLNIKLSVLITLFMIFSLFSNLSTPIQAETTRKEYVTTVNDHTIGDELFQFKFSSGWIESTGVNSFYNGDEYWTNATKSFQPSYRLKFYGNKVELYGVKEQTSAICEVSIDGGDIEEVDPYNPTRVTGQKIYEKSGLTDDEHILELKITYRKNQASKNYNGEIDFAKVYHKEIPATGVEMNKESIQIEVGMTDSIKAKVLPSYSTEKNIVYLVEDESIATITEDGEITGIKEGKTNIIATIEGTEIVGKTHLTIIKAGLPLGASIGSTDFHYLQKNYDDIKSLNKTTWNDIAWIGDELNSKIVTWTKDSNVNNVIISSSNFANENGDVIGSINVEISWLKETLANIGRGNPSAPVELFPDIIHNKGDLDIEANKVASAWVNITIPRDAKPGIYNGTITVSAEGLDTPYVFNYSFEVVNLVQPLPKETKTQMEIWQHPYAVARYYGVQKEELFTENHFKYLRPSLEEYRDMGGRGVIAHIVEEAWNHQSYDSDPSMVKWTKSLDGTFKFDYIDFDRWIQFNIDLGIINPKDGFGQIKCYSIVPWNNRIEYYNELTGEKESINPTPGTAEWRVPWTEFLSNFMNHLEEKGWFNITYISMDERSMKDLIASVDLIENIRNSNGESFKISSAMNYQSGNDYSFLDKIDDISIGLSHINHNSEDMKNMAKHRQEAGLLTTIYTCTGDYPNSFTISDSSESAWTMWYSLSQNTDGFMRWSWDGWVEDPLENVSYKYWEPGDPWLIYPAEKNSETKTFYSTPRYERLKEGIRDINKAKYLMENSKELKGEIEALVKSLKRANKGNNGYGSAVAATEKDRELTNNEVKRMRNGINDFAKQYIESKGVSVESVASKHMGNMLY
>CP034358.1|QAS61433.1|2564555_2565776_-|peptidase-T
MKKVEERFLEYIKIDTKSDETTGLTPSTKGQLKLAEILAEELKKIGVNKVEISENGYVYAVLEKNCDKNIPTIGFIAHMDTAPDYCGLNVNPQIVQNYDGGDIKLNDEVILSPKFSPELRDYIGKTLITTDGTTLLGADDKAGIAEIMTAIEYLVNHPEIKHGDIKIGFTPDEEIGEGADHFNVEMFKADFAYTIDGGAIGELEFENFNAAGVKVEIKGVNVHPGYAKNKMINSIMVAHEFINKLPLNEVPEKTEKYEGFSHLTDIKGSIEKTTLDFIIRDFFADTFEERKEKFKEIEKELNEVYGEGVVTVKVKEQYRNMKEKIEPIMHIVETAKKAMEDANVTPKVKPIRGGTDGARLSYMGLPTPNLFAGGENFHGKYEYIPIESMEKAVEVILNIVRIYSEK
>CP034358.1|QAS61434.1|2565870_2566935_-|polysaccharide-deacetylase
MNNVERKAYNGRYKNQRKKCKVKNSNINKLKKKRYRRRVRNKIIFKFIMISLFVTILIVIKNNISNYKAEKSKENAKNEIVTTIVDDKSNDNKDTEPKKQERYEKQEEIKKSDPHEIMPNSNVTYEGVTYAMDASDVKAMLYGTYAGSKKYVFLTFDDGPSPNTEKVLDILKENNVKGTFFVLGSMIEASTEAQKTLKRIIKEGNALANHTYTHNLSTLYPRNTIDINYFMEEVNNTNKLMKKILGENFNTKVLRMPGGYMSRKYYNDPSLPAFDDKLNSEGIVSIDWNTLNGDAEGVEYTVEEMVNKVKEGAKEVNQSIVLMHDTYGKEKTVEALPEIINYFKSQGYEFRTIK

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Crispr_ID: CP034358_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034358_6

2699942-2700032

Orphan

Consensus_repeat	Method
CTATTTATGAAATAACTAACCAAATACC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034358_6

>merge|CP034358|6|2699942-2700032|CRISPRCasFinder
CTATTTATGAAATAACTAACCAAATACCGTACCATGAAGAACTTTGAGCTTTCCCACCAATATCTATTTATGAAATAACTAACCAAATACC

>CP034358|6|6|2699942-2700032|CRISPRCasFinder
CTATTTATGAAATAACTAACCAAATACC	GTACCATGAAGAACTTTGAGCTTTCCCACCAATAT
CTATTTATGAAATAACTAACCAAATACC

Protein	Signature genes	Signature genes Name	Protein_function
CP034358.1\|QAS61538.1\|2700419_2701973_-\|nitrite/sulfite-reductase	unknown	unknown	gnl\|CDD\|223233
CP034358.1\|QAS61533.1\|2695683_2696025_-\|histidine-triad-nucleotide-binding-protein	unknown	unknown	gnl\|CDD\|238607
CP034358.1\|QAS61541.1\|2705248_2705863_-\|nucleotide-exchange-factor-GrpE	unknown	unknown	gnl\|CDD\|237629
CP034358.1\|QAS61530.1\|2694517_2694796_-\|sporulation-protein-YqfC	unknown	unknown	gnl\|CDD\|131903
CP034358.1\|QAS61540.1\|2703347_2705201_-\|molecular-chaperone-DnaK	unknown	unknown	gnl\|CDD\|234715
CP034358.1\|QAS61532.1\|2695386_2695563_-\|30S-ribosomal-protein-S21	unknown	unknown	gnl\|CDD\|234707
CP034358.1\|QAS61537.1\|2699298_2699796_-\|thiol-peroxidase	unknown	unknown	gnl\|CDD\|179055
CP034358.1\|QAS61542.1\|2705883_2706915_-\|heat-inducible-transcriptional-repressor-HrcA	unknown	unknown	gnl\|CDD\|234621
CP034358.1\|QAS61536.1\|2698204_2699146_-\|50S-ribosomal-protein-L11-methyltransferase	unknown	unknown	gnl\|CDD\|283886
CP034358.1\|QAS61529.1\|2693375_2694512_-\|sporulation-protein-YqfD	unknown	unknown	gnl\|CDD\|377731
CP034358.1\|QAS61539.1\|2702124_2703255_-\|molecular-chaperone-DnaJ	unknown	unknown	gnl\|CDD\|184611
CP034358.1\|QAS61546.1\|2709753_2711559_-\|elongation-factor-4	unknown	unknown	gnl\|CDD\|235462
CP034358.1\|QAS61543.1\|2707083_2708217_-\|oxygen-independent-coproporphyrinogen-III-oxidase	unknown	unknown	gnl\|CDD\|180263
CP034358.1\|QAS61535.1\|2697416_2698181_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	unknown	unknown	gnl\|CDD\|236959
CP034358.1\|QAS61534.1\|2696112_2697417_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	unknown	unknown	gnl\|CDD\|223694
CP034358.1\|QAS61531.1\|2694904_2695354_-\|GatB/YqeY-domain-containing-protein	unknown	unknown	gnl\|CDD\|370480
CP034358.1\|QAS61544.1\|2708345_2708615_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|198379
CP034358.1\|QAS61545.1\|2708780_2709689_+\|patatin	unknown	unknown	gnl\|CDD\|132852
CP034358.1\|QAS61528.1\|2691295_2693344_-\|HD-family-phosphohydrolase	unknown	unknown	gnl\|CDD\|224397
CP034358.1\|QAS61547.1\|2711673_2712237_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP034358.1\|QAS61538.1\|2700419_2701973_-\|nitrite/sulfite-reductase	gnl\|CDD\|223233	COG0155, CysI, Sulfite reductase, beta subunit (hemoprotein) [Inorganic ion transport and metabolism].	2.92616e-104
CP034358.1\|QAS61533.1\|2695683_2696025_-\|histidine-triad-nucleotide-binding-protein	gnl\|CDD\|238607	cd01276, PKCI_related, Protein Kinase C Interacting protein related (PKCI): PKCI and related proteins belong to the ubiquitous HIT family of hydrolases that act on alpha-phosphates of ribonucleotides. The members of this subgroup have a conserved HxHxHxx motif (x is a hydrophobic residue) that is a signature for this family. No enzymatic activity has been reported however, for PKCI and its related members.	1.10805e-53
CP034358.1\|QAS61541.1\|2705248_2705863_-\|nucleotide-exchange-factor-GrpE	gnl\|CDD\|237629	PRK14160, PRK14160, heat shock protein GrpE; Provisional.	8.94688e-75
CP034358.1\|QAS61530.1\|2694517_2694796_-\|sporulation-protein-YqfC	gnl\|CDD\|131903	TIGR02856, Uncharacterized_protein_YqfC, sporulation protein YqfC. This small protein, designated YqfC in Bacillus subtilis, is both restricted to and universal in sporulating species of the Firmcutes, such as Bacillus subtilis and Clostridium perfringens. It is part of the sigma(E)-controlled regulon, and its mutation leads to a sporulation defect. [Cellular processes, Sporulation and germination].	3.43763e-26
CP034358.1\|QAS61540.1\|2703347_2705201_-\|molecular-chaperone-DnaK	gnl\|CDD\|234715	PRK00290, dnaK, molecular chaperone DnaK; Provisional.	0
CP034358.1\|QAS61532.1\|2695386_2695563_-\|30S-ribosomal-protein-S21	gnl\|CDD\|234707	PRK00270, rpsU, 30S ribosomal protein S21; Reviewed.	3.68527e-13
CP034358.1\|QAS61537.1\|2699298_2699796_-\|thiol-peroxidase	gnl\|CDD\|179055	PRK00522, tpx, thiol peroxidase.	4.44192e-78
CP034358.1\|QAS61542.1\|2705883_2706915_-\|heat-inducible-transcriptional-repressor-HrcA	gnl\|CDD\|234621	PRK00082, hrcA, heat-inducible transcription repressor; Provisional.	3.65186e-128
CP034358.1\|QAS61536.1\|2698204_2699146_-\|50S-ribosomal-protein-L11-methyltransferase	gnl\|CDD\|283886	pfam06325, PrmA, Ribosomal protein L11 methyltransferase (PrmA). This family consists of several Ribosomal protein L11 methyltransferase (EC:2.1.1.-) sequences.	2.22045e-117
CP034358.1\|QAS61529.1\|2693375_2694512_-\|sporulation-protein-YqfD	gnl\|CDD\|377731	pfam06898, YqfD, Putative stage IV sporulation protein YqfD. This family consists of several putative bacterial stage IV sporulation (SpoIV) proteins. YqfD of Bacillus subtilis is known to be essential for efficient sporulation although its exact function is unknown.	6.41099e-102
CP034358.1\|QAS61539.1\|2702124_2703255_-\|molecular-chaperone-DnaJ	gnl\|CDD\|184611	PRK14297, PRK14297, molecular chaperone DnaJ.	0
CP034358.1\|QAS61546.1\|2709753_2711559_-\|elongation-factor-4	gnl\|CDD\|235462	PRK05433, PRK05433, GTP-binding protein LepA; Provisional.	0
CP034358.1\|QAS61543.1\|2707083_2708217_-\|oxygen-independent-coproporphyrinogen-III-oxidase	gnl\|CDD\|180263	PRK05799, PRK05799, oxygen-independent coproporphyrinogen III oxidase.	0
CP034358.1\|QAS61535.1\|2697416_2698181_-\|16S-rRNA-(uracil(1498)-N(3))-methyltransferase	gnl\|CDD\|236959	PRK11713, PRK11713, 16S ribosomal RNA methyltransferase RsmE; Provisional.	8.87447e-81
CP034358.1\|QAS61534.1\|2696112_2697417_-\|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB	gnl\|CDD\|223694	COG0621, MiaB, 2-methylthioadenine synthetase [Translation, ribosomal structure and biogenesis].	0
CP034358.1\|QAS61531.1\|2694904_2695354_-\|GatB/YqeY-domain-containing-protein	gnl\|CDD\|370480	pfam09424, YqeY, Yqey-like protein. The function of this domain found in the YqeY protein is uncertain.	4.43115e-56
CP034358.1\|QAS61544.1\|2708345_2708615_-\|hypothetical-protein	gnl\|CDD\|198379	cd00495, Ribosomal_L25_TL5_CTC, Ribosomal L25/TL5/CTC N-terminal 5S rRNA binding domain. L25 is a single-domain protein, homologous to the N-terminal domain of TL5 and CTC. CTC is a known stress protein, and proteins of this family are believed to have two functions, acting as both ribosomal and stress proteins. In Escherichia coli, cells deleted for L25 were found to be viable; however, these cells grew slowly and had impaired protein synthesis capability. In Bacillus subtilis, CTC is induced under stress conditions and located in the ribosome; it has been proposed that CTC may be necessary for accurate translation under stress conditions. Ribosomal_L25_TL5_CTC is mostly found in bacteria, with a few exceptions such as plants or stramenopiles. Due to its limited taxonomic diversity and the viability of cells deleted for L25, this protein is not believed to be necessary for ribosomal assembly. Eukaryotes contain a protein called L25, which is not homologous to bacterial L25, but rather to bacterial L23.	6.18949e-08
CP034358.1\|QAS61545.1\|2708780_2709689_+\|patatin	gnl\|CDD\|132852	cd07213, Pat17_PNPLA8_PNPLA9_like1, Patatin-like phospholipase. Patatin is a storage protein of the potato tuber that shows Phospholipase A2 activity (PLA2; EC 3.1.1.4). Patatin catalyzes the nonspecific hydrolysis of phospholipids, glycolipids, sulfolipids, and mono- and diacylglycerols, thereby showing lipid acyl hydrolase activity. The active site includes an oxyanion hole with a conserved GGxR motif; it is found in almost all the members of this family. The catalytic dyad is formed by a serine and an aspartate. Patatin belongs to the alpha-beta hydrolase family which is identified by a characteristic nucleophile elbow with a consensus sequence of Sm-X-Nu-Sm (Sm = small residue, X = any residue and Nu = nucleophile). Members of this family have been found also in vertebrates. This family includes subfamily of PNPLA8 (iPLA2-gamma) and PNPLA9 (iPLA2-beta) like phospholipases from human as well as the Pat17 isozyme from Solanum cardiophyllum.	1.53716e-75
CP034358.1\|QAS61528.1\|2691295_2693344_-\|HD-family-phosphohydrolase	gnl\|CDD\|224397	COG1480, COG1480, Predicted membrane-associated HD superfamily hydrolase [General function prediction only].	0

>CP034358.1|QAS61537.1|2699298_2699796_-|thiol-peroxidase
MKKVTFQGDPLTLQGSTVKVGEKLRDFVVVGNDLNPVTLKDTRGVRVFLSVPSIDTGVCDMEVRKFNEEVAKLQGVTCYTVSMDLPFAQVRWCGAAGVEVVKTVSDYKDRSFGEATGTYIKELGLLTRASFVVDSQDNVTFVEYLEEITNEPSYNKVLEAVKLAR
>CP034358.1|QAS61536.1|2698204_2699146_-|50S-ribosomal-protein-L11-methyltransferase
MEGTWIEVRVITKSEALEPISGIFYGLDCKGIAIEDPNDILGREQGPLTWDFADINVLEHKGTVAVVKAYFAEEDNIEEILVYINEKINELREIGIDVGEGKVENEKMFEEDWANNWKKYYKPTKVGDKIVVKPIWEEYEIKDNELLVELDPGMAFGTGTHETTRMCIQALERYVKEDSTVFDVGCGSGILAISAAKLGAKLAVGVDLDPVAVESAKENVGFNNLDNIEILYGNLVEVIDGKADIVVANIIAEIICILTEDVKRVINDGGYFITSGIIHDRVEMVTNKLEETGFEVLEINKDGEWNCIVAKLK
>CP034358.1|QAS61535.1|2697416_2698181_-|16S-rRNA-(uracil(1498)-N(3))-methyltransferase
MHKFFTPRENFSENECTILGDDVKHIYKVLRLAEGEKVILNNCNGEEFLGAIKSVGKQEVVVSILEKLDIDNESEVKIYLFQGLPKSQKMDLIVQKGTELGICEFIPTLTSRVDIKLKGDFKKLDRLNRIALEAAKQSKRSIVPRVTEPVSFESAISEIKLMDLMIVPYENAENFGVKTLMEELKNKDYDLRKIKKIGILVGPEGGFEEDEIAILKENGAYIITLGSRILRTETAGFVATSLIQYELGDLGGKI
>CP034358.1|QAS61534.1|2696112_2697417_-|tRNA-(N(6)-L-threonylcarbamoyladenosine(37)-C(2))--methylthiotransferase-MtaB
MKVAFATLGCRVNVYESEAMAEKFIREGYEVVDFSEVADVYVINTCTVTNMGDKKSRQIIGRARRLNENAIIAVVGCYSQMAPKEVSEIPGVDVVLGTRNKGDVVYYVNKAKDEGKNQVHVEGVLKNKKFEDLNIEDYQDKTRAFLKIQDGCNRFCTYCLIPYARGSVCSKDPKKVISEVKKLAEHGFKEIILSGIHTASYGLDLEGNVTLINIIEEIEKVEGIERIRIGSIEPAFFTPEVIEKIKKFKKLCPHFHLSLQSGCDATLKRMNRRYTSKEYEDTVKLLRETLKGVSITTDVIVGFPGETEEEFNETLEFLKRIKLTKTHVFKYSPRKGTKAADMENQIDGNIKEKRSKILIDLSNKNEEEFNKKFINSKMDVLIEKEVKEKEGIFEGYTRNYIKIEVPCTCSDITGKIVDIKIIEANGELAKAELL
>CP034358.1|QAS61533.1|2695683_2696025_-|histidine-triad-nucleotide-binding-protein
MNCIFCKIINGEIPTEKIYEDEKVVAFNDINKEAPIHFLVIPKVHIQSVNEINKDNSDIISHIFMVINKIVKELGIDKSGYRIVNNCGNDGGQTVNHIHFHVLGQRELKWPPG
>CP034358.1|QAS61532.1|2695386_2695563_-|30S-ribosomal-protein-S21
MSEIKVGENETLESALRRFKRKCARAGVLSEVRKREHYEKPSVKRKKKSEAARKRKFK
>CP034358.1|QAS61531.1|2694904_2695354_-|GatB/YqeY-domain-containing-protein
MPIKDRLQEDWKTALKSKDKFRANVISTAKSAILLVEKTDGVKLEDDKVIEILAKEVKQRREAMLEFEKGNRQDLVDQNKAEIEILLNYLPQQLNEQEILEIIKVSATEVGANNIKDMGKVMAVVRPKVMGRADGKLVSQIVKDYLTNK
>CP034358.1|QAS61530.1|2694517_2694796_-|sporulation-protein-YqfC
MQDKLNKSRNIIVEKLDLPKDIILDIPRITVLGDGEITIENHKGIVVFERNIIKVNTNVSPITINGENFEILYIGSSTITISGKFQSIIYEG
>CP034358.1|QAS61529.1|2693375_2694512_-|sporulation-protein-YqfD
MGFDFLKISKITVEVSILNPERLLNILWTKRVNILNVKRVDIATVLIQIEYEDYDILKDAVKKLGGKMKIVGSGGFLFFLGKLKRKSSLVIGGILFVMIIFYLSTFVWRVEINTKKNVSPYELRQQLYAIGIKPGIKKSNINAKEIEKKIEDVNSDVLWLRARVEGSTLKVYIEEKVNPPKQQEKKMGNLVAKMDGQIKRIYAFSGRAAVPIGTMIRAGEVVIEGINGKEEEPYEVPPEGVVMANTFYEKDMKVQIDGSKLERNGKRDNDIYLNIFGKKIYLKKAIKDFKHYDKIEESGKVFNKVIYFEREETPVKLSKEEAVENSIRELGESLLNELTREAVIVDKIVNTEEDGQGNLMVKVIFVVEQNIVDNTPIN
>CP034358.1|QAS61528.1|2691295_2693344_-|HD-family-phosphohydrolase
MFLNKNKDKSKRITLGIIVFILTYGLLITSIAPKKYSLEEGDIANVDIKAPRDTVDEIATKEREKEILDKIGKQYTLNGEIKIKAEENITKLFDKVSNVNSTESEEKEKISSIKKVEGFNLSDNECKTLLGLTKEQLSSIHWFIVDTLNLAYTEPVEENNLEHIQRAKNVVDNELNKQTFDRNLEDVIKDIIYSQIKPNFFFDKEKTDEKIREAQKNVPKEIIKKNQTIVKEGEPITARQIELLKELGLLDKGGGKNYLYTYLVLAIFVIIVLTLQYAYIAKERKDLFEDTRMIVMISIINLVVIVLSRGLTIISPFLIPLACGPILITVLLDYKISLVTNFLNLILVSVVVGFKPGVIILGIINIIIGSTGLKKIQQRNDVLYSTIYIGVVSAIITLAAGMLISNDISGIAKDTGFSVLAALLSGILALGLLPFFESSFDVVTNIKLLELSNPNQPLMKKLLMEAPGTYHHSMMVANLAEVAAEEVGGNPVVARIGAYYHDIGKTKRPYFFGENQMGRENPHNKISPNLSTLIIISHTKDGVELAKENNIPKVIRDIIEQHHGTTLVKYFYYTMKNSTDNPDEVKEEDFRYPGPIPSSKEAAIVMLADGVEAAVRSINEPTKGKIEEMVNNIIKDKLYSDQLSNCDLTLKDIETIRKCFLKVLNGIYHRRIEYPTEKKVKK
>CP034358.1|QAS61538.1|2700419_2701973_-|nitrite/sulfite-reductase
MTKLKKILYDEIEDFREKGHKFLNGELNVMQFKHASGGFGVYAHRGGKEFMIRLRIPSGITNLEEMKIIYEFAKKYGMERIHFTTRQAIQFHGLSIDEVCDLMKEALDNDIYTRGSGGNFPRNVAISPLSGVNTDEAFDVTPYAMAVGNYFLERIYTYKLPRKLKVSFSSSNADGAHCTVQDLGFLAVNKDGNEYFQVYLGGGLGQNPKIAVKYKELIDPKEVLYYVEGMVNLFIAEGNYENRNKARVRYILDRMGEEEFIACFKNHVDEVKAKGDLDLLNIKTKEYNKPGIETKIKSTRLFKQKQKGLYSVYLHPVGGQLEVKDLKAILDLVDKMSDVEFRLAMTEGIYFRNLNGKEAEELLKLTEDMGGKTVFEQSVSCIGVPTCQVGLCNSQGTLKAILDYFKEKNFTKDVLPRIYISGCGNSCGVHQVGPIGFTGKKKRVNDEVCECFSLYVDGSFAVNKTKLGDCYGDILASKIPEFLYELAVNIDKAELRYDEYIKSNNENFKNLVNKYLV
>CP034358.1|QAS61539.1|2702124_2703255_-|molecular-chaperone-DnaJ
MANKDYYASLGLEKGASDEEIKRAFRKLAIKYHPDKNQGNKEAEDKFKEINEAYQVLSDPEKKARYDQFGTADFDGSGFGSGGFGGFDFSDMGGFGDIFDSFFGGSGGRRRNGPQRGDDLEYTLNLTFEEAVFGVEKEISINRSENCDSCRGTGAKAGTTPKTCPTCNGSGQVRVQRQTPLGSFVSTSTCDRCGGKGKIVEEPCQKCSGKGKVRKNRKIKINIPAGVDTGNVMPLRGQGEHGTNDGPPGDLYIRINVAPSKKFVRKGNDIYVDAHISMAKAALGTEITVATVDGDVKYTIPQGTQSGTLFRLKGKGVPRVNSSGRGDQYVKVIVDIPKSLNEKQKEALKMFMEASGESVDEVVTHKKGFKDLFGKK
>CP034358.1|QAS61540.1|2703347_2705201_-|molecular-chaperone-DnaK
MGKIIGIDLGTTNSCVAVMEGGEPVVISNSEGARTTPSVVSFQANGERLVGQVAKRQAITNPDKTIISIKRHMGTNYKVSIDGKDYSPQEISAMVLQKIKADAESYLGEPVTQAVITVPAYFNDSERQATKDAGRIAGLEVLRIINEPTAASLAYGLDKMDTNQKIFVYDLGGGTFDVSILELGDGVFEVLSTNGDTKLGGDDFDEKIMNYIADTFKAENGIDLRNDKMSLQRLKEASEKAKIELSSSMQTNINLPFITADATGPKHIDMNLTRAKFNEITHDLVQRSIEPMKKALADANLSLSDIDKVILVGGSTRIPAVQEAVKNFTGKEPSKGVNPDECVAVGAAIQAGVLTGEVKDVLLLDVTPLTLGIETLGGVATALIERNTTIPAKKSQTFSTAADGQTSVEIHVVQGERQMAADNKTLGRFTLSGIAPAPRGIPQIEVTFDIDANGLVKVSAVDKATNKEANITITASTNLSESEVESAVKEAEKFAEEDKKRKEKIEVKNNADQVAYQTQKTLEELGDKVSPEDKAKVEAKLEELNKIKDGDDTEAIKKTMEELTQEFYAISSKVYADANANGGANAGFDPNNMGGANQGAAHDDNVVDADFEVKEDK
>CP034358.1|QAS61541.1|2705248_2705863_-|nucleotide-exchange-factor-GrpE
MEDNKEFKEEVKDENIEVEENDIEVEECDSCQDESSEENIPEEKESKDGWNPLKTMKKLKEDNKKLSNEVEALKDRLLRISAEYENYRKRTIKEKEGIYTDACTDVLKEMLPVLDNLERALLADGSIEDVKKGIEMTIKGVSGSFEKLGVEEIDATGEFDPNLHQAVMHVQDENLEANMVAEVFQKGYKRGDKVIRYTMVKVAN
>CP034358.1|QAS61542.1|2705883_2706915_-|heat-inducible-transcriptional-repressor-HrcA
MAIDERKIKILQAIINDYIMTGEPVGSRTIAKRYNLGVGSATIRNEMADLEEMGYLEQPHTSSGRIPSNKGYRLYVDKLMNAEALSREEELKIKEYIINSAMYEVDKIVKQACSLLSELTNLTCIVETPSVKRSYIKSIQLLVIDSYNLVSVIVADSGVIKNHRIRVSEMPEIETLQRINEILNLRLKNLTIEEINLEVINNLKNELEGYDELFNAILPALYETLKEVNHSDILVEGATNIFNYPEYNDIEKAKEILSLINDKDCVIELLESPEGISIKIGEENYFPEAKECSVISAEYSLDGRPIGTIGLIGPRRINYSKVIAIMGQVMKELNRSLRNQIIE
>CP034358.1|QAS61543.1|2707083_2708217_-|oxygen-independent-coproporphyrinogen-III-oxidase
MKEIALYIHIPFCKQKCLYCDFPSYASLENLMDDYVDALCMEIQEKAKEYLISSIFIGGGTPSYLNKNQIEKLLNSINKLNKTKNMEFSMECNPGSLDEEKLKTMFLGGVNRISIGLQAVQDSLLKSIGRIHTYREFVENFNLARKIGFKNINVDLMFGLPNQKISHWKESLETIANIKPEHISSYSLIIEEGTCFYNMWNKDKLNLPSEEDEREMYSMTKEILKSHGYKQYEISNYSKEGYECLHNKVYWQCKPYLGVGTSASSFLDEYRFKNIDKVKEYIKRINNNESVVEEKLKNSIEDDIEEFMFMGLRLIEGVCKREFELRFGRNIRSIYNEIIDKNISMGLLEEDNNILRLTSKGVELSNVVMSDFIIDRK
>CP034358.1|QAS61544.1|2708345_2708615_-|hypothetical-protein
MIKADFRDVKIKGKVMRNKGYSTGTLKRKNGDIIPISMVGHKLDTYIARHGLNSKITIELDGLKINSKIDRVQRDLIFHNAINIDLIEI
>CP034358.1|QAS61545.1|2708780_2709689_+|patatin
MNPLKIVSFDGGGIKGALSIRIFKRLCYQYPTLLDNIDLFAGTSTGSLIALSLASGLSVNEVDNLYSYEITSKIFSNPSFNLFKPKFSNKNLKSILLNYFPNNLTLKNLPKYVCIPSFNVNGFTKNQWEPVFFNNLTDNKTINYNIIDVALASSAAPTFFPSHKNFIDGGVVANSPTTISIFHCMNAFPNIDFKNDIKLLSIGTGDSPYKIKQSTSNWGIYKWSFHPFAKMHSPIVSLVMDGMCDLDDMYCNILLKNNYFRINPKVSKLIEMDDYNFVPYLKFLADNIDLSDLFEFIESKFF
>CP034358.1|QAS61546.1|2709753_2711559_-|elongation-factor-4
MNSNRQERIRNFSIVAHIDHGKSTLADRLLEATGTLTQREMEEQILDNMELERERGITIKSQAARLIYKREDGEEYILNLIDTPGHVDFTYEVSRSLAACEGAVLVVDATQGVQAQTLANCYLALNNDLEIAPVINKVDLPSARPEEIMQEIEDVIGIEAHDAPLISAKTGLNIGDVLESIVEKVPAPTGDEEAPLKALIFDSYYDSYKGVVSYVRIKDGIVKPGTKIKLMATNKVYEVTEVGVFTPKLLPISELRAGDVGYIAASIKNVRDARVGDTITEADRPTDAALEGYKPAIPMVYSGIYPVDGAKYQELKDALEKLQINDAALNFEPETSIALGFGFRCGFLGLLHMEIIQERIEREFNLDIITTAPSVIYKVIKTNGEVIELTNPTNLPPATEIDYMEEPVVRGSIISPSDYVGAVMELCQERRGTFIDMQYLEETRVSINYEIPLNEIVYDFFDTLKSRTRGYASLDYEFKGYTRTELVKLDIMLNGDVVDALSMIVPKERAYDKGRGIAEKLKEIIPRQMFEVPIQAAVGSKIIARETVKAMRKDVLAKCYGGDISRKKKLLEKQKEGKKRMRQVGSVEVPQEAFMAVLKVD
>CP034358.1|QAS61547.1|2711673_2712237_-|hypothetical-protein
MSLKKFILGAIIFTIIIVLGFTSVNIETTKALSPTGDGADNYAMVSKEFGKDFEEFIRDNAMVKIYVPKDDDDNTTIKVYNNEFRVKKENPFVKGFYEVVYKFSNSFNSIKNKIDGKLKKNNENTNNQLDNIVDDFIKEREEEKSQNKNIKKEEKNINKEENEGSNINIDEKKNTEGENINKKSSVE

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Crispr_ID: CP034358_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034358_7

3198448-3198540

Orphan

Consensus_repeat	Method
CTTTTAACTTAACATAAATGTGCTTTCC	CRISPRCasFinder

1 spacers

WYL

The CRISPR arrays of CP034358_7

>merge|CP034358|7|3198448-3198540|CRISPRCasFinder
CTTTTAACTTAACATAAATGTGCTTTCCTATTGAATTATAATTAATGAAAAATAAAGATAAAAGGCTTTTGACTTAACATAAATGTGCTTTCC

>CP034358|7|7|3198448-3198540|CRISPRCasFinder
CTTTTAACTTAACATAAATGTGCTTTCC	TATTGAATTATAATTAATGAAAAATAAAGATAAAAGG
CTTTTGACTTAACATAAATGTGCTTTCC

Protein	Signature genes	Signature genes Name	Protein_function
CP034358.1\|QAS61925.1\|3191047_3191695_-\|LPXTG-cell-wall-anchor-domain-containing-protein	unknown	unknown	unknown
CP034358.1\|QAS61936.1\|3201612_3201981_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS61931.1\|3196502_3196814_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS61934.1\|3199739_3200378_+\|VanZ-family-protein	unknown	unknown	gnl\|CDD\|377417
CP034358.1\|QAS61939.1\|3203753_3204554_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS61938.1\|3202888_3203752_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|213231
CP034358.1\|QAS61929.1\|3194072_3196091_+\|sensor-domain-containing-diguanylate-cyclase	unknown	unknown	gnl\|CDD\|143635
CP034358.1\|QAS61926.1\|3191705_3192371_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274973
CP034358.1\|QAS61924.1\|3190371_3191004_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274973
CP034358.1\|QAS61928.1\|3193141_3193804_-\|HTH-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl\|CDD\|225253
CP034358.1\|QAS62235.1\|3204543_3205104_-\|sigma-70-family-RNA-polymerase-sigma-factor	unknown	unknown	gnl\|CDD\|274357
CP034358.1\|QAS61923.1\|3190064_3190325_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274973
CP034358.1\|QAS61935.1\|3200424_3201603_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS61932.1\|3197328_3198291_-\|leucine-rich-repeat-domain-containing-protein	unknown	unknown	gnl\|CDD\|380193
CP034358.1\|QAS61933.1\|3198587_3199046_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS61930.1\|3196193_3196445_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS61941.1\|3206175_3207408_-\|serine/threonine-transporter-SstT	unknown	unknown	gnl\|CDD\|184190
CP034358.1\|QAS61927.1\|3192400_3192907_-\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|131283
CP034358.1\|QAS61937.1\|3202060_3202888_-\|hypothetical-protein	unknown	unknown	unknown
CP034358.1\|QAS61940.1\|3205364_3206129_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP034358.1\|QAS61923.1\|3190064_3190325_-\|hypothetical-protein	gnl\|CDD\|274973	TIGR04090, hypothetical_protein, alternate signal-mediated exported protein, CPF_0494 family. Members of this largely Clostridial protein family contain the cognate signal peptide domain, modeled by TIGR04088, for the variant SipW form of the signal peptidase I family. The remainder of this protein, however, differs from families such as Peptidase_M73 (pfam12389) and YqxM (TIGR04087) that share the same signal peptide domain. Some additional homologs to this family lack full-length homology and are excluded by the trusted cutoff as set. The two known targets for export by the SipW signal peptidase in Bacillus subtilis act in producing biofilm matrix material. Members include CPF_0494, adjacent to SipW homolog CPF_0493.	6.60149e-07
CP034358.1\|QAS61932.1\|3197328_3198291_-\|leucine-rich-repeat-domain-containing-protein	gnl\|CDD\|380193	NF033189, internalin_A, class 1 internalin InlA. Internalins, as found in the intracellular human pathogen Listeria monocytogenes, are paralogous surface or secreted proteins with an N-terminal signal peptide, leucine-rich repeats, and usually a C-terminal LPXTG processing and cell surface anchoring site. See PMID:17764999 for a general discussion of internalins. Members of this family are internalin A (InlA), a class 1 (LPXTG-type) internalin.	3.53126e-23
CP034358.1\|QAS61934.1\|3199739_3200378_+\|VanZ-family-protein	gnl\|CDD\|377417	pfam04892, VanZ, VanZ like family. This family contains several examples of the VanZ protein, but also contains examples of phosphotransbutyrylases.	5.53404e-17
CP034358.1\|QAS61938.1\|3202888_3203752_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|213231	cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component. The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.	1.58538e-104
CP034358.1\|QAS61941.1\|3206175_3207408_-\|serine/threonine-transporter-SstT	gnl\|CDD\|184190	PRK13628, PRK13628, serine/threonine transporter SstT; Provisional.	0
CP034358.1\|QAS61927.1\|3192400_3192907_-\|signal-peptidase-I	gnl\|CDD\|131283	TIGR02228, Signal_peptidase_I_W, signal peptidase I, archaeal type. This model represents signal peptidase I from most archaea, a subunit of the eukaryotic endoplasmic reticulum signal peptidase I complex, and an apparent signal peptidase I from a small number of bacteria. It is related to but does not overlap in hits with TIGR02227, the bacterial and mitochondrial signal peptidase I.	7.49373e-25
CP034358.1\|QAS61929.1\|3194072_3196091_+\|sensor-domain-containing-diguanylate-cyclase	gnl\|CDD\|143635	cd01949, GGDEF, Diguanylate-cyclase (DGC) or GGDEF domain. Diguanylate-cyclase (DGC) or GGDEF domain: Originally named after a conserved residue pattern, and initially described as a domain of unknown function 1 (DUF1). This domain is widely present in bacteria, linked to a wide range of non-homologous domains in a variety of cell signaling proteins. The domain shows homology to the adenylyl cyclase catalytic domain. This correlates with the functional information available on two GGDEF-containing proteins, namely diguanylate cyclase and phosphodiesterase A of Acetobacter xylinum, both of which regulate the turnover of cyclic diguanosine monophosphate. Together with the EAL domain, GGDEF might be involved in regulating cell surface adhesion in bacteria.	1.48773e-36
CP034358.1\|QAS61926.1\|3191705_3192371_-\|hypothetical-protein	gnl\|CDD\|274973	TIGR04090, hypothetical_protein, alternate signal-mediated exported protein, CPF_0494 family. Members of this largely Clostridial protein family contain the cognate signal peptide domain, modeled by TIGR04088, for the variant SipW form of the signal peptidase I family. The remainder of this protein, however, differs from families such as Peptidase_M73 (pfam12389) and YqxM (TIGR04087) that share the same signal peptide domain. Some additional homologs to this family lack full-length homology and are excluded by the trusted cutoff as set. The two known targets for export by the SipW signal peptidase in Bacillus subtilis act in producing biofilm matrix material. Members include CPF_0494, adjacent to SipW homolog CPF_0493.	1.73804e-12
CP034358.1\|QAS61924.1\|3190371_3191004_-\|hypothetical-protein	gnl\|CDD\|274973	TIGR04090, hypothetical_protein, alternate signal-mediated exported protein, CPF_0494 family. Members of this largely Clostridial protein family contain the cognate signal peptide domain, modeled by TIGR04088, for the variant SipW form of the signal peptidase I family. The remainder of this protein, however, differs from families such as Peptidase_M73 (pfam12389) and YqxM (TIGR04087) that share the same signal peptide domain. Some additional homologs to this family lack full-length homology and are excluded by the trusted cutoff as set. The two known targets for export by the SipW signal peptidase in Bacillus subtilis act in producing biofilm matrix material. Members include CPF_0494, adjacent to SipW homolog CPF_0493.	6.09768e-09
CP034358.1\|QAS61928.1\|3193141_3193804_-\|HTH-domain-containing-protein	gnl\|CDD\|225253	COG2378, COG2378, Predicted transcriptional regulator [Transcription].	5.04414e-20
CP034358.1\|QAS62235.1\|3204543_3205104_-\|sigma-70-family-RNA-polymerase-sigma-factor	gnl\|CDD\|274357	TIGR02937, RNA_polymerase_sigma_factor, RNA polymerase sigma factor, sigma-70 family. This model encompasses all varieties of the sigma-70 type sigma factors including the ECF subfamily. A number of sigma factors have names with a different number than 70 (i.e. sigma-38), but in fact, all except for the Sigma-54 family (TIGR02395) are included within this family. Several Pfam models hit segments of these sequences including Sigma-70 region 2 (pfam04542) and Sigma-70, region 4 (pfam04545), but not always above their respective trusted cutoffs.	2.47732e-30

>CP034358.1|QAS61932.1|3197328_3198291_-|leucine-rich-repeat-domain-containing-protein
MYRRGYEKIQKQKLYKNVMVGAIVASLSLQGVSTNASSINDSLESDNKTIIQKFTSFMNNIIYKTENILKGNIVNVPDANLKKLLNAALYHEEDEDIMKSDLANIKWLSNIGPEPTLAETNITNLEGIQYCVNLENLLIDVSNIKNLKPMFEIPSLKWIMFDEVKNEQLKGIDSLKNLENFNCEKLDSLEEISKVENLKTLICVNGKIKDIKPLVKLKKLEALWLIDNEIEDISSLENLKQLHALGLQDNNVKDIRALTNLKNIQLLNLDNNNITDISSLSNMEKLAELHLNENDIKDITPLDNLPNLKWLFINNNEIYM
>CP034358.1|QAS61931.1|3196502_3196814_-|hypothetical-protein
MFFRIFGIALIGFSIWGLIFTCINRKDMPNSIFALKPNSYEVIENVKFNNLMIYKSLILSILFLISGILCVCIQGIESFIPIYIGTLIQSVLGIRSKKYIRIK
>CP034358.1|QAS61930.1|3196193_3196445_-|hypothetical-protein
MTRNEKVINLYKETYADENLEELSIDEMEEALMEYYLATGFEINSVDELFENRDVNPDFDKEMEKKIQVVLKELAEKEAKKNA
>CP034358.1|QAS61929.1|3194072_3196091_+|sensor-domain-containing-diguanylate-cyclase
MSLNNVHNIDVLKNILSDLYLKYGTTDETLRLSQLVDVLVKNQQNIIVKIRENEERFKNIICAASDMIFEIDINNNTLLYSREGLPYELSSINKTSENIYSSLFDNIANTFIHPNDYNEFKKLFSLKNVIDLIMAGKEPPYMDVRILKNNKYIWVTCAVTPAISKIEDQIILMVYAKNIHDKKLKELEMIRKTQRDPLTDLYNKSFTISKIENILTKPLITHYYLIIIDMDNFSLINKNLGHSFGDAVLQDISKKIRSVFKDADVIGRVGGDEFIVFTKEIDNKSSLVYKLDKLKILLKQSFGRNDDKVELSASMGISSYPEDGTVLDELGKAAQKALYISKVNTKDSYYFYDPTIHFQQNGFFKSSIDESNSQYLLSDINNNIFEYIFRILYETKDTYTAINLILKIIGEHFNINRVYIYELSEDCDYCCNTFEWCNEGVSPKLNIFKSISVKEFDIYSPYFDDNGLFFCNNINTLPPPLLKLVKKQNVKSFLQYSICDDGKFRGFVGFDECFKENRNWSFEEIKILKLVSNIVSTFLLKERSYNNLLKSVKINNSILDNVNSYTYAVDSESYELVFINKKIRTLIPHAKIGDKCYNVIFKGQNSPCKSCPIKLLKKSNNCTEDSIELYNEYYKLLVNSTASKLEWEENKGTYLIHCYDITKYKKTSSKKQ
>CP034358.1|QAS61928.1|3193141_3193804_-|HTH-domain-containing-protein
MRLLEILIILLKHNKITTKELSEHFNVSIKTIQRDLDKLSVLGIPITTKRGAEGGVILDGKYKLSRGVLTYEDYDALIFSLKLAESVFENVSILEVLNKLLLIDSEEVKNEFEKINKYVHIDIVDNKIKLESKICKIINKALGYNNLLSINIKEKIYEVEPLAYVVKVEGMFLYAYMNKEYWLIPIAAIDDVNLLNVEFTPKLINYKENSKVKKLELNIE
>CP034358.1|QAS61927.1|3192400_3192907_-|signal-peptidase-I
MKKTVKIIGNSIVYLLIALILISALVSKTSDSKKSPELFGYSVYSVLTGSMEPTMKTGSIVVVKNIPVNDIEKDDVITFRSNNTSNITTHRVSNIINEDGLKFITKGDANNAEDPLPVDSNLVIGKVIFNIPFLGKALIFISKNLLLIIAVLVIAMAVGSKVNNSRNS
>CP034358.1|QAS61926.1|3191705_3192371_-|hypothetical-protein
MVKRKGIGKIIIALGVTAILVGGTLAWFASSDTVINKFSTGSVPGDLNSGVDIWEKFNEESAKNIVPGTIVEKLVQAKNTASYNSFIRVKIEKEFLGTNNANLSTDMIKLDFGDNLTTEPSNGKWVDEKDGYYYYIDKIAPGKFTNALLKNVELSTEAGNAYKNATFNVKIIAESIQSSNNAHETGWSTSSEAVKAKLTELGAESVVAGGNDASEPGAIEK
>CP034358.1|QAS61925.1|3191047_3191695_-|LPXTG-cell-wall-anchor-domain-containing-protein
MRNKMKKISKVFIITLLTFSMITIKGFAIDNKVSNVELVGNANGLVFIPGNEPFLYSDNIVPGDKIKRTIVIKNNHEDSYELFMKAERGIPKEEFDLLNKLNLKVTYKDEVIYEGPASGEDSLSNNISLGVFNSGDKEDLVAEVEFDGPSIGNEFKDKSAEVNWIFTAVKEVKEEIENKPNLGIGSPNTGDKGISLYVVLFLTSMLALIKFNKKI
>CP034358.1|QAS61924.1|3190371_3191004_-|hypothetical-protein
MIKNKKSRYIILGLCLSFITLINTPRVYASVEEIKNWFTARDEVSNNFINGDIDISIEEDFKEPENWDGLNHDKKVAIQNNGKSDAFIRVSIVPRWVDENGKPWIGDSNYVDLTFVNVTEDLNTANAAWIKGEDGYYYYNQIVKTTNKTVDLLESVALNIPTDKKDVYKNRKLIVDVKSETVQATSNAYLKVWEGVPESIKLVLDRLLAN
>CP034358.1|QAS61923.1|3190064_3190325_-|hypothetical-protein
MIRRKSINRTILAVGAAAVLVGGTLAWFTSTDTVTNKFKTGGNGTDQTTDGVEIWEKFDNVEALKFFQGQLLIRKFKLKIQLLIIH
>CP034358.1|QAS61933.1|3198587_3199046_-|hypothetical-protein
MELVKRDKKNITTRMALLLGFIPMVNNINIVVVSAILAIILIKTNIINNGVKKRFNIGEVFIYNLKCMILYYLVAFTITLFTYSEVLNIFQIRNNNGLLDYAFMLLDPKIILISISITLSSYICSLKHSKSGILSIILAIINTALLIYIIKF
>CP034358.1|QAS61934.1|3199739_3200378_+|VanZ-family-protein
MGLLFVMTIGIIVYSTFLKKYLISNNIKISKWFIIGLYIFAYYLGVVFEITGPGNIFDIGRDMNMIVNLVPFKDIIAGSDFMMNLFQLTANIILFIPLGILLPSLFERFEKFHNTLLMGFMLSLIIEIFQLLNVRATDIDDLLMNTLGAVIGFIIYSLLLKKFTSKLKLKNRNNGETLIKYNSEFFISIMFYLYFFITPCADRILNKLIFRI
>CP034358.1|QAS61935.1|3200424_3201603_-|hypothetical-protein
MNIIINELKKIFNIKSILVVGVICFLIYQMFIEFHIKIFPNGYPDTDTYEIAKRIVEEKGVLPKEGLEYLRGIENEYKIKATEYLKENKLAQELGITNYDEYADKVNNIHKKHYESENDMDKKINQLYDDIMFVNKVDAYWNLQGIEGFIMRVRGKKITDNMESLSKSQINRLNEIINSESYNDVLPELVFSNYNEFIINSAILILISVVFFIAPIFTKDKHNKLEYIQYSTKRGRKLYKDKILTSLIATFIIATVELGGLFYLYLTRENTVEMFYNSSINSIFRYKMNWFDVNFKEYIILCVVLVYIFAFAISLITCYISRKSDRYITLTGICILLAILLTSILRSNYMVYSGLGDLYIPRFFIEGILLIILLVGVTLINLRYRKEKRINI
>CP034358.1|QAS61936.1|3201612_3201981_-|hypothetical-protein
MSIKEYLILMIILFYLCIFIFIFIAFVIGRFIKNSYIAFVACCILNGVSLIIPSLSPGNSKIIIYSTFTPFNLVYNPICRFMNSGALTMFKYYEGITIIVWSVLMVGFMYYSIKTFKKECIS
>CP034358.1|QAS61937.1|3202060_3202888_-|hypothetical-protein
MNNKREILFHEIKKVFKSPIVLVVFAIFLGVDLFIVFKNYGFRDDLKVLNTIIDEVGYEINDKMMDNFKVYYENRFKDTMDMIKKVEGKSYSSMGEHLRAIEYNLYDVRYTKEEKRIIKDTSIIESYYLSIPELKKSYESLEFKEMAEQSIESLKLSGDVAKIVRYGFNSFNVRFNELKENREHLELFFNGKSYRMHEFLFGDIFGALYFQIMILIALISTSILNYEFESGTSLITYSSKRGRKLIYDKLKSIIISIVALSTALLTIVLGVFFNL
>CP034358.1|QAS61938.1|3202888_3203752_-|ATP-binding-cassette-domain-containing-protein
MLIVNNLSKSFGNFTVLEDINLEFKNGVYGLLAPNGAGKTTLIKLLTTLIFPTKGEILYDGVDIISLDEEYREILGYLPQNFGYYKNYSPKQFLMYLSALKGVNKKESSKKIDELLEMVALNDVSNKKMKKFSGGMIQRVGIAQALLNDPKILILDEPTAGLDPKERVRFRNILTELSRDRIVIISTHIVSDIEFIANEVIMIKDKKVLHKDSVENICRTLEGKVYETEIDFSMAKDFRNNHLSLSEKQEDGKMKIRFIDKEKKNNLWKSVSPNLEDVFLYEYNEGI
>CP034358.1|QAS61939.1|3203753_3204554_-|hypothetical-protein
MNYKDKKLSENEKFNIDIDFDNMVIPDLQGNIDEILDKGLKGKRNFFSFFKEVKNELGFKNIFHDKSELIFIGLILSIAVIMFGLYFNERENSNLDFTYKLKSYTFITAPIIYFFICSYNFINSRLNGTYEIQATCKYNFYTLTAIRMFIFSIISMVINTAIILIMFLVKRNFNVVEVVIVSITSLFIFSVIYILALVKLKERTYKYLVLIVWIGVSSIIMYGVNSKLAKYFLDSPIYINIGITCIVAVFYIKNLKKLIKVRRGEV
>CP034358.1|QAS62235.1|3204543_3205104_-|sigma-70-family-RNA-polymerase-sigma-factor
MDHELRLIENIQKKGHRESANMLIKVYYREIYGYVFKQLSCNELSADITQEIFISMIKSIDNYNKEKCSFRTWLYKISSNKIIDYYRSKSYKQRIKSQTIDDLDIKCEGSIEDDFIIEETVNEVLNIVNSFEANIQQIFRMKIFSDMTFKEIGKVLDLSESTVKTKYYRLIKRIKVMLEECKSNEL
>CP034358.1|QAS61940.1|3205364_3206129_-|hypothetical-protein
MYYNKIYDFIKKLDSTNIEEYKPQLTKYIIELMLSFKDYNNSISLEDLQFMLDTALLREEFQCELKNELEEEGFKLGLLTGAFIDIYKEFTSNIAENGYINDAISLTRSVIKALDCISIPFYLIKKNGGFNEENLKYMESIDYLNDLQEELGKYLNQYVTNTSKEYFNVLGLVEYIKKELEENINNIGHIIMSQLSNKSLEDFNKEEHMNEYKAIFKKEYIEELKRRKYQWSILTSKLKENYFRDELYKDLDRI
>CP034358.1|QAS61941.1|3206175_3207408_-|serine/threonine-transporter-SstT
MKTIMEKWNNISLVKRIIVGLILGIVIALTIPKIGAPLSLLGSLFVGALKAIAPVLVFFLVMAALCQYKEGKKTNMKSIIVLYLLGTLAAGIIGVIGSFLFPVKLVFTSSVENLTPPSGVGEVLHNLLMSIVANPVNALANANYIGILFWAIILGLAFKNASEGSKEIILNISDAMSEVVRWIINLAPFGIMGLVYESISKQGIESLVKYGQLILVLVGCMAFFALVINPIITFIAIRKNPYPLVIKCLRDSGITAFFTRSSAANIPVNMALCKELGLNEDTYSISIPLGSTINMGGAAITISVLALAATHTLGINVDLGTTIILTILSAISACGTSGVAGGSILLVPLACSLFGIPNDVAMQVVGVGFVIGVIQDSCETALNSSTDVLYTAVAEFAKARRSKQKLVSSK

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP034358_5	5.6\|2546193\|36\|CP034358\|PILER-CR,CRISPRCasFinder,CRT	2546193-2546228	36	MN038178	Bacillus phage Beyonphe, complete genome	154890-154925	7	0.806
CP034358_5	5.6\|2546193\|36\|CP034358\|PILER-CR,CRISPRCasFinder,CRT	2546193-2546228	36	NC_031100	Bacillus phage Phrodo, complete genome	155434-155469	7	0.806
CP034358_5	5.6\|2546193\|36\|CP034358\|PILER-CR,CRISPRCasFinder,CRT	2546193-2546228	36	KF669647	Bacillus phage BigBertha, complete genome	155454-155489	7	0.806
CP034358_5	5.8\|2546320\|37\|CP034358\|PILER-CR,CRISPRCasFinder,CRT	2546320-2546356	37	AP017994	Planktothrix agardhii NIES-204 plasmid plasmid3 DNA, complete sequence	44887-44923	8	0.784
CP034358_5	5.32\|2547872\|37\|CP034358\|PILER-CR,CRISPRCasFinder,CRT	2547872-2547908	37	NZ_CP021643	Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence	629-665	8	0.784
CP034358_5	5.36\|2548130\|37\|CP034358\|PILER-CR,CRISPRCasFinder,CRT	2548130-2548166	37	NZ_CP039728	Bacillus sp. S3 plasmid unnamed, complete sequence	69503-69539	9	0.757
CP034358_5	5.57\|2549491\|37\|CP034358\|PILER-CR,CRISPRCasFinder,CRT	2549491-2549527	37	NZ_CP039728	Bacillus sp. S3 plasmid unnamed, complete sequence	69503-69539	9	0.757
CP034358_5	5.73\|2550525\|37\|CP034358\|CRISPRCasFinder,CRT	2550525-2550561	37	NZ_CP013040	Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence	15500-15536	9	0.757
CP034358_5	5.73\|2550525\|37\|CP034358\|CRISPRCasFinder,CRT	2550525-2550561	37	NC_011412	Clostridium perfringens plasmid pCP8533etx, complete sequence	1198-1234	9	0.757
CP034358_5	5.73\|2550525\|37\|CP034358\|CRISPRCasFinder,CRT	2550525-2550561	37	LN835295	Clostridium perfringens plasmid pJIR4150, complete sequence, strain JIR12708	14813-14849	9	0.757
CP034358_5	5.73\|2550525\|37\|CP034358\|CRISPRCasFinder,CRT	2550525-2550561	37	NC_010937	Clostridium perfringens plasmid pCW3, complete sequence	23993-24029	10	0.73
CP034358_5	5.73\|2550525\|37\|CP034358\|CRISPRCasFinder,CRT	2550525-2550561	37	NC_019688	Clostridium perfringens plasmid pNetB-NE10, complete sequence	14331-14367	10	0.73
CP034358_5	5.73\|2550525\|37\|CP034358\|CRISPRCasFinder,CRT	2550525-2550561	37	NZ_CP025502	Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence	7108-7144	10	0.73
CP034358_5	5.73\|2550525\|37\|CP034358\|CRISPRCasFinder,CRT	2550525-2550561	37	NZ_CP025503	Clostridium perfringens strain EHE-NE18 plasmid pJIR3844, complete sequence	13723-13759	10	0.73
CP034358_5	5.73\|2550525\|37\|CP034358\|CRISPRCasFinder,CRT	2550525-2550561	37	NZ_CP025504	Clostridium perfringens strain EHE-NE18 plasmid pJIR3537, complete sequence	45759-45795	10	0.73
CP034358_5	5.73\|2550525\|37\|CP034358\|CRISPRCasFinder,CRT	2550525-2550561	37	NC_019259	Clostridium perfringens plasmid pJIR3537, complete sequence	14702-14738	10	0.73
CP034358_5	5.78\|2550848\|36\|CP034358\|CRISPRCasFinder,CRT,PILER-CR	2550848-2550883	36	MK250021	Prevotella phage Lak-B2, complete genome	139517-139552	11	0.694
CP034358_5	5.78\|2550848\|36\|CP034358\|CRISPRCasFinder,CRT,PILER-CR	2550848-2550883	36	MK250023	Prevotella phage Lak-B4, complete genome	139420-139455	11	0.694

1. spacer 5.6|2546193|36|CP034358|PILER-CR,CRISPRCasFinder,CRT matches to MN038178 (Bacillus phage Beyonphe, complete genome) position: , mismatch: 7, identity: 0.806

ggaatataaaatgggaataagagaaaattattttaa	CRISPR spacer
ggaatataaaatggaaatcagagaaattaactggaa	Protospacer
**************.*** ******* * *.*  **

2. spacer 5.6|2546193|36|CP034358|PILER-CR,CRISPRCasFinder,CRT matches to NC_031100 (Bacillus phage Phrodo, complete genome) position: , mismatch: 7, identity: 0.806

ggaatataaaatgggaataagagaaaattattttaa	CRISPR spacer
ggaatataaaatggaaatcagagaaattaactggaa	Protospacer
**************.*** ******* * *.*  **

3. spacer 5.6|2546193|36|CP034358|PILER-CR,CRISPRCasFinder,CRT matches to KF669647 (Bacillus phage BigBertha, complete genome) position: , mismatch: 7, identity: 0.806

ggaatataaaatgggaataagagaaaattattttaa	CRISPR spacer
ggaatataaaatggaaatcagagaaattaactggaa	Protospacer
**************.*** ******* * *.*  **

4. spacer 5.8|2546320|37|CP034358|PILER-CR,CRISPRCasFinder,CRT matches to AP017994 (Planktothrix agardhii NIES-204 plasmid plasmid3 DNA, complete sequence) position: , mismatch: 8, identity: 0.784

gatttaatggaagaaattattgttgattcattgaata	CRISPR spacer
gaaactttagaagaaaatattgttgattcattcaata	Protospacer
**  .  *.******* *************** ****

5. spacer 5.32|2547872|37|CP034358|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021643 (Campylobacter concisus strain P2CDO4 plasmid pICON, complete sequence) position: , mismatch: 8, identity: 0.784

gctcctcttcaaatttaggtgttttattgtaaccaca	CRISPR spacer
gctcctcttcaaatttatgttttttaacatatacaaa	Protospacer
***************** ** ***** ..**  ** *

6. spacer 5.36|2548130|37|CP034358|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039728 (Bacillus sp. S3 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.757

agacaacgttgttgttctgaacaatgtgataagtaaa	CRISPR spacer
acatgctgttgttgtcttgaacaatgtgataaggaca	Protospacer
* *.. .********..**************** * *

7. spacer 5.57|2549491|37|CP034358|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP039728 (Bacillus sp. S3 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.757

agacaacgttgttgttctgaacaatgtgataagtaaa	CRISPR spacer
acatgctgttgttgtcttgaacaatgtgataaggaca	Protospacer
* *.. .********..**************** * *

8. spacer 5.73|2550525|37|CP034358|CRISPRCasFinder,CRT matches to NZ_CP013040 (Clostridium perfringens strain JP838 plasmid pJFP838C, complete sequence) position: , mismatch: 9, identity: 0.757

aatataaagagttaataataacaaactactaatttac	CRISPR spacer
gaaacaaagaattaataataacaaactactaaaaagt	Protospacer
.* *.*****.*********************   ..

9. spacer 5.73|2550525|37|CP034358|CRISPRCasFinder,CRT matches to NC_011412 (Clostridium perfringens plasmid pCP8533etx, complete sequence) position: , mismatch: 9, identity: 0.757

aatataaagagttaataataacaaactactaatttac	CRISPR spacer
gaaataaagaattgataataacaaactactaaaaagt	Protospacer
.* *******.**.******************   ..

10. spacer 5.73|2550525|37|CP034358|CRISPRCasFinder,CRT matches to LN835295 (Clostridium perfringens plasmid pJIR4150, complete sequence, strain JIR12708) position: , mismatch: 9, identity: 0.757

aatataaagagttaataataacaaactactaatttac	CRISPR spacer
gaaataaagaattgataataacaaactactaaaaagt	Protospacer
.* *******.**.******************   ..

11. spacer 5.73|2550525|37|CP034358|CRISPRCasFinder,CRT matches to NC_010937 (Clostridium perfringens plasmid pCW3, complete sequence) position: , mismatch: 10, identity: 0.73

aatataaagagttaataataacaaactactaatttac	CRISPR spacer
gaaacaaagagttgataattacaaactactaaaaagt	Protospacer
.* *.********.***** ************   ..

12. spacer 5.73|2550525|37|CP034358|CRISPRCasFinder,CRT matches to NC_019688 (Clostridium perfringens plasmid pNetB-NE10, complete sequence) position: , mismatch: 10, identity: 0.73

aatataaagagttaataataacaaactactaatttac	CRISPR spacer
gaaacaaagagttgataattacaaactactaaaaagt	Protospacer
.* *.********.***** ************   ..

13. spacer 5.73|2550525|37|CP034358|CRISPRCasFinder,CRT matches to NZ_CP025502 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3535, complete sequence) position: , mismatch: 10, identity: 0.73

aatataaagagttaataataacaaactactaatttac	CRISPR spacer
gaaacaaagagttgataattacaaactactaaaaagt	Protospacer
.* *.********.***** ************   ..

14. spacer 5.73|2550525|37|CP034358|CRISPRCasFinder,CRT matches to NZ_CP025503 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3844, complete sequence) position: , mismatch: 10, identity: 0.73

aatataaagagttaataataacaaactactaatttac	CRISPR spacer
gaaacaaagagttgataattacaaactactaaaaagt	Protospacer
.* *.********.***** ************   ..

15. spacer 5.73|2550525|37|CP034358|CRISPRCasFinder,CRT matches to NZ_CP025504 (Clostridium perfringens strain EHE-NE18 plasmid pJIR3537, complete sequence) position: , mismatch: 10, identity: 0.73

aatataaagagttaataataacaaactactaatttac	CRISPR spacer
gaaacaaagagttgataattacaaactactaaaaagt	Protospacer
.* *.********.***** ************   ..

16. spacer 5.73|2550525|37|CP034358|CRISPRCasFinder,CRT matches to NC_019259 (Clostridium perfringens plasmid pJIR3537, complete sequence) position: , mismatch: 10, identity: 0.73

aatataaagagttaataataacaaactactaatttac	CRISPR spacer
gaaacaaagagttgataattacaaactactaaaaagt	Protospacer
.* *.********.***** ************   ..

17. spacer 5.78|2550848|36|CP034358|CRISPRCasFinder,CRT,PILER-CR matches to MK250021 (Prevotella phage Lak-B2, complete genome) position: , mismatch: 11, identity: 0.694

agtttttttattttttatgtttataggattagtcac	CRISPR spacer
gtaatttttattttttatttttaaaggatttataca	Protospacer
.   ************** **** ****** .*

18. spacer 5.78|2550848|36|CP034358|CRISPRCasFinder,CRT,PILER-CR matches to MK250023 (Prevotella phage Lak-B4, complete genome) position: , mismatch: 11, identity: 0.694

agtttttttattttttatgtttataggattagtcac	CRISPR spacer
gtaatttttattttttatttttaaaggatttataca	Protospacer
.   ************** **** ****** .*

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

821865 : 830583

Bacillus_phage(66.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAS59985.1\|821865_822561_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-42	37.3
QAS59986.1\|822544_824320_+	HAMP domain-containing histidine kinase	W8CYF6	Bacillus_phage	2.3e-26	29.0
QAS59987.1\|824377_824728_+	arsenate reductase family protein	M1PLC0	Streptococcus_phage	1.8e-23	48.1
QAS59988.1\|824938_827170_+	ribonucleoside-diphosphate reductase subunit alpha	A0A127AW21	Bacillus_phage	1.0e-191	47.1
QAS59989.1\|827205_828240_+	ribonucleotide-diphosphate reductase subunit beta	A0A127AVZ3	Bacillus_phage	2.4e-71	40.7
QAS59990.1\|828308_828608_-	hypothetical protein	NA	NA	NA	NA
QAS59991.1\|828963_830583_+	phosphoenolpyruvate--protein phosphotransferase	A0A1V0SGR7	Hokovirus	5.6e-19	33.0

DBSCAN-SWA_2

1660641 : 1673122

Clostridium_phage(45.45%)

integrase

attL 1650620:1650635|attR 1671414:1671429

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1650620:1650635	attL	NA	NA	NA	NA
QAS60666.1\|1660641_1661631_+	lactate dehydrogenase	M1I4S0	Paramecium_bursaria_Chlorella_virus	3.4e-59	40.4
QAS60667.1\|1661630_1662632_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	5.7e-22	27.8
QAS60668.1\|1662646_1663300_+	TIGR00266 family protein	NA	NA	NA	NA
QAS60669.1\|1663344_1664424_-\|integrase	site-specific integrase	Q8SBN2	Clostridium_phage	3.3e-23	29.4
QAS60670.1\|1664470_1664929_-	ImmA/IrrE family metallo-endopeptidase	A0A0A7RTX7	Clostridium_phage	3.6e-40	54.6
QAS60671.1\|1665947_1666235_+	transcription factor	NA	NA	NA	NA
QAS60672.1\|1666296_1666494_+	hypothetical protein	NA	NA	NA	NA
QAS60673.1\|1666728_1666983_+	hypothetical protein	A0A0A7S062	Clostridium_phage	5.0e-15	48.1
QAS60674.1\|1667133_1669056_+	hypothetical protein	D7RWF8	Brochothrix_phage	7.0e-77	32.5
QAS60675.1\|1669057_1669525_+	hypothetical protein	NA	NA	NA	NA
QAS60676.1\|1669536_1669809_+	hypothetical protein	NA	NA	NA	NA
QAS60677.1\|1669826_1670720_+	recombinase RecT	S0A2Z5	Cellulophaga_phage	2.1e-52	44.7
QAS60678.1\|1670719_1671418_+	MBL fold metallo-hydrolase	A0A0A0RVF5	Bacillus_phage	9.4e-56	49.1
QAS60679.1\|1671443_1672022_+	HD domain-containing protein	A0A2H4J8L1	uncultured_Caudovirales_phage	7.8e-48	48.7
1671414:1671429	attR	NA	NA	NA	NA
QAS60680.1\|1672023_1672428_+	single-stranded DNA-binding protein	Q8SBL5	Clostridium_phage	1.4e-40	61.6
QAS60681.1\|1672477_1673122_+	ERCC4-type nuclease	F8UBF1	Clostridium_phage	8.5e-43	43.3

DBSCAN-SWA_3

1678036 : 1684714

Clostridioides_phage(33.33%)

portal

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAS60688.1\|1678036_1678471_+	RNA polymerase subunit sigma	A0A0A8WIL5	Clostridium_phage	3.0e-12	33.3
QAS60689.1\|1678626_1679076_+	helix-turn-helix domain-containing protein	A0A2H4J863	uncultured_Caudovirales_phage	1.8e-31	57.1
QAS60690.1\|1679316_1681083_+	hypothetical protein	A0A1V0DZW7	Clostridioides_phage	1.7e-226	66.7
QAS60691.1\|1681094_1682426_+\|portal	phage portal protein	A0A1V0DZW8	Clostridioides_phage	1.8e-100	48.4
QAS60692.1\|1683858_1684062_+	hypothetical protein	NA	NA	NA	NA
QAS60693.1\|1684127_1684436_+	hypothetical protein	A0A2K9V384	Faecalibacterium_phage	6.9e-11	43.4
QAS60694.1\|1684450_1684714_+	hypothetical protein	A0A0S2MYE7	Enterococcus_phage	4.4e-30	70.9

DBSCAN-SWA_4

1690925 : 1698013

Clostridium_phage(25.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAS60701.1\|1690925_1691522_+	hypothetical protein	F6K8R8	Clostridium_phage	3.1e-63	59.7
QAS60702.1\|1691825_1692104_+	hypothetical protein	A0A0K2CP90	Brevibacillus_phage	6.7e-05	45.9
QAS60703.1\|1692082_1692229_+	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
QAS60704.1\|1693143_1693383_+\|tail	phage tail tape measure protein	H7BV48	unidentified_phage	9.2e-11	52.9
QAS60705.1\|1693506_1693893_+	hypothetical protein	A0A075KJK1	Lactobacillus_phage	1.4e-13	50.0
QAS60706.1\|1694281_1694824_+	hypothetical protein	A0A0A8WET6	Clostridium_phage	4.1e-22	37.4
QAS60707.1\|1694823_1695522_+\|tail	phage tail protein	A0A1B2APY0	Phage_Wrath	4.7e-39	38.4
QAS60708.1\|1695524_1696934_+	lysin	A0A1B2APX2	Phage_Wrath	4.2e-87	47.4
QAS60709.1\|1696935_1697214_+	hypothetical protein	NA	NA	NA	NA
QAS60710.1\|1697215_1698013_+	hypothetical protein	A0A1S5S9Z9	Streptococcus_phage	3.9e-13	40.5

DBSCAN-SWA_5

1889594 : 1897729

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAS60871.1\|1889594_1890737_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.3e-88	45.3
QAS60872.1\|1890832_1891111_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	5.1e-05	40.2
QAS60873.1\|1891162_1891531_+	TIGR04086 family membrane protein	NA	NA	NA	NA
QAS60874.1\|1891698_1892967_+	protein translocase subunit SecD	NA	NA	NA	NA
QAS60875.1\|1892959_1893832_+	protein translocase subunit SecF	A0A1B1IVP7	uncultured_Mediterranean_phage	3.7e-33	36.9
QAS60876.1\|1893971_1894826_+	phosphoesterase	A7KV88	Bacillus_phage	1.1e-13	24.4
QAS60877.1\|1894914_1895433_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	7.3e-29	45.1
QAS60878.1\|1895545_1897729_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A2I2L310	Orpheovirus	8.2e-13	35.0

DBSCAN-SWA_6

2101094 : 2108732

uncultured_Mediterranean_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAS61045.1\|2101094_2101613_+	NUDIX hydrolase	A0A2K9VCP4	Lactobacillus_phage	5.1e-14	32.6
QAS61046.1\|2101770_2102406_+	stage II sporulation protein M	NA	NA	NA	NA
QAS61047.1\|2102475_2103354_+	tyrosine recombinase XerD	A0A142F1N9	Bacillus_phage	7.8e-23	26.7
QAS61048.1\|2103400_2104567_+	phosphopentomutase	NA	NA	NA	NA
QAS61049.1\|2104611_2105916_+	pyrimidine-nucleoside phosphorylase	A0A0H3UZD4	Geobacillus_virus	1.3e-130	57.8
QAS62201.1\|2106136_2107270_+	D-alanyl-D-alanine carboxypeptidase	B6DZZ7	Stx2-converting_phage	3.1e-32	29.9
QAS61050.1\|2107384_2108128_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	6.0e-08	23.5
QAS61051.1\|2108120_2108732_+	segregation/condensation protein B	A0A1B1IVT7	uncultured_Mediterranean_phage	6.2e-19	32.8

DBSCAN-SWA_7

2591333 : 2604599

Prochlorococcus_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAS61447.1\|2591333_2592836_-	bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase PurH	Q58MG4	Prochlorococcus_phage	2.4e-64	46.2
QAS61448.1\|2592853_2593465_-	phosphoribosylglycinamide formyltransferase	R9S626	Prochlorococcus_phage	2.3e-21	36.2
QAS61449.1\|2593452_2594454_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A1D7SQF5	Cyanophage	1.4e-65	44.4
QAS61450.1\|2594463_2595891_-	amidophosphoribosyltransferase	A0A1B1ISH6	uncultured_Mediterranean_phage	1.7e-56	33.6
QAS61451.1\|2595942_2596647_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4SM18	Cyanophage	3.8e-44	42.5
QAS61452.1\|2596646_2597126_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	4.0e-29	48.4
QAS61453.1\|2597138_2600885_-	phosphoribosylformylglycinamidine synthase	A6N228	Microbacterium_phage	3.8e-26	24.6
QAS61454.1\|2601533_2602043_-	DedA family protein	NA	NA	NA	NA
QAS61455.1\|2602299_2602455_-	cytochrome C551	NA	NA	NA	NA
QAS61456.1\|2602743_2602899_-	cytochrome C551	NA	NA	NA	NA
QAS61457.1\|2603198_2603603_-	hypothetical protein	NA	NA	NA	NA
QAS61458.1\|2603660_2604599_-	SPFH/Band 7/PHB domain protein	A0A2K9KZA2	Tupanvirus	3.7e-23	34.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034358

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection