CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP034928	Candidatus Bipolaricaulis sp. Ch78 chromosome, complete genome	1 crisprs	csa3,cas3,DEDDh,DinG,cas4,cas5,cas8c,cas7,cas1,cas2	0	9	1	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034928_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034928_1

930163-933516

TypeI

I-C

Consensus_repeat	Method
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	PILER-CR
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CRISPRCasFinder
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CRT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	PILER-CR

50 spacers

cas2,cas1,cas4,cas7,cas8c,cas5,cas3

The CRISPR arrays of CP034928_1

>merge|CP034928|1|930163-933516|PILER-CR,CRISPRCasFinder,CRT,PILER-CR
GTCGCCCCCCGCACGGGGGCGTGGATTGAAACGAGCTCGTACCCGTACTGACGGGCGAGCTGGACCTGTCGCCCCCCGCACGGGGGCGTGGATTGAAACAGGCGGGAGGACGCTCCACCCAGGGCGGGGAGGTCGTCGCCCCCCGCACGGGGGCGTGGATTGAAACGTAGAGGCTCGGGCCTGGTGGGAGGAAAGCTGGGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTTGCCGACTTTGTGAATGGGTTCAAGGACAACAAGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTCGGGAAGATCTAGGAGGGCTGAATGGCAACCTGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTCCCACGGGCGGGCTGCCACACCCGAGGCCGGGGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTAGGAGGGGCCGTGGCCGGGATGAATGAAGCGTAGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCCATAGAGCACCGGTCTTCGCCACAGCAGCGCACCGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCTCCCGCCTGACCTCCTCCCCTGGGTGGGGCGTGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCGGCAGGCCGCTCGCGAGCGGCTGCTGGCCCGGAGTCGCCCCCCGCACGGGGGCGTGGATTGAAACAGGCATCCTAGCTCACCTCCGCTGCGAGCTGGCGGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCCCTTGACACACGGCTAGCCCTGCCTATAATGGCGTCGCCCCCCGCACGGGGGCGTGGATTGAAACATCTTCCCCGCCCATGATTTCTTGGGCGGAGGAGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTCTGCCCCAGGGGCTCAGGGAGAGCAGCCGAGAGTGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCGTAACCCGCGGCCCATTCCGGCCAGAAGATCGCGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTCCCGCGACCTCATCTTCCCCGCCCATGATCTCGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCTTGCTCGCAGTCGCAACGTGACCGTCCACGCTTAGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTGGTTATACCACCACTTGCCCTGCTCATCTGCCTTGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTCCGGCTGCTGGGTATTCTTGCGCGCCTTGGCCAAGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCTCGGGCGGGACGGACTACGGCGGGGTGGCCCTGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTCCATCCCGTGGGGAACGTTCAACTTCGGGATGTGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACAATATACTTTGACACCTGCTTTTCAACCGTCCGGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACAGCTAGGATGCCTTGTGAAGCCGGTAAGGCCCGAGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTTTGAGACGGAGCGGGTGCGGGATGAGCATGACAGGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACGACTTTCTTGGCTACGTGGACGTGCGGACCGATGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACGCGGCTTCCGCCGCGACCCCTCAAGAAACCGATGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCCACACAAAGGAGCGGTGCAGACTACGGAGCAAGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCATCCTAAGTGGATCTTCCTCGGTTTTAGTCTAGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTCACCCTCTCCGCAAACGTGATCACGTGCACCCCGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCGGGATGAGCTTCGGTTATTCCTGCAAGATCTGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACAGCGTTCTTCGATGAGGCGGACCAGTGGCGGCAGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCCGGGAGGGAAGTAGCTCCCCGCCGCCCCCGGACGTCGCCCCCCGCACGGGGGCGTGGATTGAAACGAGAAACCGCTGCTCGGAGCGCGTGAGTTGTAACGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACATTTGGCTTGACGAGCTTACAACGGACACAGTTGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTTTGACTCCCGGCTCCAGTAGCCTTTGACTTCGAGTCGCCCCCCGCACGGGGGCGTGGATTGAAACGCCGGAGCGGCTGAACCAGATGTATTGCCCGACGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCCTGACCCACTATCCCGAACTGCAGGGGTTCGTTGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACGTAGAGCGCTACACCGAAGGCACGAGCGCCGCCCGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCTCGTGCAGCCTGCGGAAGTAGGCCAGGAGGTCGCGTCGCCCCCCGCACGGGGGCGTGGATTGAAACGTTGAGCGTCCGCACATCTGCCAACAGCTCCCACAGTCGCCCCCCGCACGGGGGCGTGGATTGAAACCAACGCAGCCAAGTGGCCACGTAGGCTCTCGATCGTCGCCCCCCGCACGGGGGCGTGGATTGAAACACCTCCCCCTCGGTGGCTTGGGGTACTCGGCCGGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTACTCTAGTTGTGCCCGCTCCGTCGGTCGGGGCATGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTCGAAGGCCTGCAGGAGGCATCATGACAACTAGAGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTCAGGGCTTCTGGCAGAGCTTGGCGACGTTCCCGTGTCGCCCCCCGCACGGGGGCGTGGATTGAAACGGGTCGGGACTTATCGGCACTTGCGACCGTGCGGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTTATGCGTCCGATCCACCGTACAAGTACTCGCCAGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTACGAGGATCGCAGAGATCCTCGCAGAGGCCGTGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTCGAACGCGACCATCTCCGGCCACTCCTCATCACGGAGGTCGCCCCCCGCACGGGGGCGTGGATTGAAACTTCGGTCGGGGAGATTGAACTATGAAGGCGAGGTAGTCGCCCCCCGCACGGGGGCGTGGATTGAAAC

>CP034928|1|1|930163-932449|PILER-CR
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GAGCTCGTACCCGTACTGACGGGCGAGCTGGACCT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGGCGGGAGGACGCTCCACCCAGGGCGGGGAGGTC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTAGAGGCTCGGGCCTGGTGGGAGGAAAGCTGGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTGCCGACTTTGTGAATGGGTTCAAGGACAACAAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGGGAAGATCTAGGAGGGCTGAATGGCAACCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCCACGGGCGGGCTGCCACACCCGAGGCCGGGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TAGGAGGGGCCGTGGCCGGGATGAATGAAGCGTA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCATAGAGCACCGGTCTTCGCCACAGCAGCGCACCG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCCCGCCTGACCTCCTCCCCTGGGTGGGGCGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGGCAGGCCGCTCGCGAGCGGCTGCTGGCCCGGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGGCATCCTAGCTCACCTCCGCTGCGAGCTGGCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCCTTGACACACGGCTAGCCCTGCCTATAATGGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ATCTTCCCCGCCCATGATTTCTTGGGCGGAGGAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCTGCCCCAGGGGCTCAGGGAGAGCAGCCGAGAGT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGTAACCCGCGGCCCATTCCGGCCAGAAGATCGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCCGCGACCTCATCTTCCCCGCCCATGATCTC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTTGCTCGCAGTCGCAACGTGACCGTCCACGCTTAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TGGTTATACCACCACTTGCCCTGCTCATCTGCCTT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCGGCTGCTGGGTATTCTTGCGCGCCTTGGCCAAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCGGGCGGGACGGACTACGGCGGGGTGGCCCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCATCCCGTGGGGAACGTTCAACTTCGGGATGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AATATACTTTGACACCTGCTTTTCAACCGTCCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGCTAGGATGCCTTGTGAAGCCGGTAAGGCCCGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTTGAGACGGAGCGGGTGCGGGATGAGCATGACAGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GACTTTCTTGGCTACGTGGACGTGCGGACCGATG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GCGGCTTCCGCCGCGACCCCTCAAGAAACCGAT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCACACAAAGGAGCGGTGCAGACTACGGAGCAA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CATCCTAAGTGGATCTTCCTCGGTTTTAGTCTA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCACCCTCTCCGCAAACGTGATCACGTGCACCCC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGGGATGAGCTTCGGTTATTCCTGCAAGATCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGCGTTCTTCGATGAGGCGGACCAGTGGCGGCAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCGGGAGGGAAGTAGCTCCCCGCCGCCCCCGGAC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GAGAAACCGCTGCTCGGAGCGCGTGAGTTGTAACG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ATTTGGCTTGACGAGCTTACAACGGACACAGTTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAACTTTGACTCCCGGCTCCAGTAGCCTTTGACTTCGAGTCGCCCCCCGCACGGGGGCGTGGATTGAAACGCCGGAGCGGCTGAACCAGATGTATTGCCCGACGGTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCTGACCCACTATCCCGAACTGCAGGGGTTCGTTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTAGAGCGCTACACCGAAGGCACGAGCGCCGCCC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCGTGCAGCCTGCGGAAGTAGGCCAGGAGGTCGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTTGAGCGTCCGCACATCTGCCAACAGCTCCCACA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CAACGCAGCCAAGTGGCCACGTAGGCTCTCGATC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ACCTCCCCCTCGGTGGCTTGGGGTACTCGGCCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TACTCTAGTTGTGCCCGCTCCGTCGGTCGGGGCATG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGAAGGCCTGCAGGAGGCATCATGACAACTAGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCAGGGCTTCTGGCAGAGCTTGGCGACGTTCCCGT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GGGTCGGGACTTATCGGCACTTGCGACCGTGCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTATGCGTCCGATCCACCGTACAAGTACTCGCCA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TACGAGGATCGCAGAGATCCTCGCAGAGGCCGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGAACGCGACCATCTCCGGCCACTCCTCATCACGGAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTCGGTCGGGGAGATTGAACTATGAAGGCGAGGTA


>CP034928|1|1|930163-933516|CRISPRCasFinder
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GAGCTCGTACCCGTACTGACGGGCGAGCTGGACCT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGGCGGGAGGACGCTCCACCCAGGGCGGGGAGGTC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTAGAGGCTCGGGCCTGGTGGGAGGAAAGCTGGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTGCCGACTTTGTGAATGGGTTCAAGGACAACAAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGGGAAGATCTAGGAGGGCTGAATGGCAACCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCCACGGGCGGGCTGCCACACCCGAGGCCGGGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TAGGAGGGGCCGTGGCCGGGATGAATGAAGCGTA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCATAGAGCACCGGTCTTCGCCACAGCAGCGCACCG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCCCGCCTGACCTCCTCCCCTGGGTGGGGCGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGGCAGGCCGCTCGCGAGCGGCTGCTGGCCCGGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGGCATCCTAGCTCACCTCCGCTGCGAGCTGGCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCCTTGACACACGGCTAGCCCTGCCTATAATGGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ATCTTCCCCGCCCATGATTTCTTGGGCGGAGGAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCTGCCCCAGGGGCTCAGGGAGAGCAGCCGAGAGT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGTAACCCGCGGCCCATTCCGGCCAGAAGATCGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCCGCGACCTCATCTTCCCCGCCCATGATCTC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTTGCTCGCAGTCGCAACGTGACCGTCCACGCTTAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TGGTTATACCACCACTTGCCCTGCTCATCTGCCTT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCGGCTGCTGGGTATTCTTGCGCGCCTTGGCCAAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCGGGCGGGACGGACTACGGCGGGGTGGCCCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCATCCCGTGGGGAACGTTCAACTTCGGGATGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AATATACTTTGACACCTGCTTTTCAACCGTCCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGCTAGGATGCCTTGTGAAGCCGGTAAGGCCCGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTTGAGACGGAGCGGGTGCGGGATGAGCATGACAGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GACTTTCTTGGCTACGTGGACGTGCGGACCGATG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GCGGCTTCCGCCGCGACCCCTCAAGAAACCGAT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCACACAAAGGAGCGGTGCAGACTACGGAGCAA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CATCCTAAGTGGATCTTCCTCGGTTTTAGTCTA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCACCCTCTCCGCAAACGTGATCACGTGCACCCC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGGGATGAGCTTCGGTTATTCCTGCAAGATCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGCGTTCTTCGATGAGGCGGACCAGTGGCGGCAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCGGGAGGGAAGTAGCTCCCCGCCGCCCCCGGAC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GAGAAACCGCTGCTCGGAGCGCGTGAGTTGTAACG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ATTTGGCTTGACGAGCTTACAACGGACACAGTTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTTGACTCCCGGCTCCAGTAGCCTTTGACTTCGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GCCGGAGCGGCTGAACCAGATGTATTGCCCGACG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCTGACCCACTATCCCGAACTGCAGGGGTTCGTTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTAGAGCGCTACACCGAAGGCACGAGCGCCGCCC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCGTGCAGCCTGCGGAAGTAGGCCAGGAGGTCGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTTGAGCGTCCGCACATCTGCCAACAGCTCCCACA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CAACGCAGCCAAGTGGCCACGTAGGCTCTCGATC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ACCTCCCCCTCGGTGGCTTGGGGTACTCGGCCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TACTCTAGTTGTGCCCGCTCCGTCGGTCGGGGCATG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGAAGGCCTGCAGGAGGCATCATGACAACTAGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCAGGGCTTCTGGCAGAGCTTGGCGACGTTCCCGT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GGGTCGGGACTTATCGGCACTTGCGACCGTGCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTATGCGTCCGATCCACCGTACAAGTACTCGCCA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TACGAGGATCGCAGAGATCCTCGCAGAGGCCGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGAACGCGACCATCTCCGGCCACTCCTCATCACGGAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTCGGTCGGGGAGATTGAACTATGAAGGCGAGGTA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC

>CP034928|1|1|930163-933516|CRT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GAGCTCGTACCCGTACTGACGGGCGAGCTGGACCT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGGCGGGAGGACGCTCCACCCAGGGCGGGGAGGTC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTAGAGGCTCGGGCCTGGTGGGAGGAAAGCTGGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTGCCGACTTTGTGAATGGGTTCAAGGACAACAAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGGGAAGATCTAGGAGGGCTGAATGGCAACCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCCACGGGCGGGCTGCCACACCCGAGGCCGGGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TAGGAGGGGCCGTGGCCGGGATGAATGAAGCGTA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCATAGAGCACCGGTCTTCGCCACAGCAGCGCACCG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCCCGCCTGACCTCCTCCCCTGGGTGGGGCGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGGCAGGCCGCTCGCGAGCGGCTGCTGGCCCGGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGGCATCCTAGCTCACCTCCGCTGCGAGCTGGCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCCTTGACACACGGCTAGCCCTGCCTATAATGGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ATCTTCCCCGCCCATGATTTCTTGGGCGGAGGAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCTGCCCCAGGGGCTCAGGGAGAGCAGCCGAGAGT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGTAACCCGCGGCCCATTCCGGCCAGAAGATCGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCCGCGACCTCATCTTCCCCGCCCATGATCTC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTTGCTCGCAGTCGCAACGTGACCGTCCACGCTTAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TGGTTATACCACCACTTGCCCTGCTCATCTGCCTT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCGGCTGCTGGGTATTCTTGCGCGCCTTGGCCAAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCGGGCGGGACGGACTACGGCGGGGTGGCCCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCATCCCGTGGGGAACGTTCAACTTCGGGATGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AATATACTTTGACACCTGCTTTTCAACCGTCCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGCTAGGATGCCTTGTGAAGCCGGTAAGGCCCGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTTGAGACGGAGCGGGTGCGGGATGAGCATGACAGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GACTTTCTTGGCTACGTGGACGTGCGGACCGATG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GCGGCTTCCGCCGCGACCCCTCAAGAAACCGAT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCACACAAAGGAGCGGTGCAGACTACGGAGCAA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CATCCTAAGTGGATCTTCCTCGGTTTTAGTCTA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCACCCTCTCCGCAAACGTGATCACGTGCACCCC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGGGATGAGCTTCGGTTATTCCTGCAAGATCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGCGTTCTTCGATGAGGCGGACCAGTGGCGGCAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCGGGAGGGAAGTAGCTCCCCGCCGCCCCCGGAC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GAGAAACCGCTGCTCGGAGCGCGTGAGTTGTAACG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ATTTGGCTTGACGAGCTTACAACGGACACAGTTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTTGACTCCCGGCTCCAGTAGCCTTTGACTTCGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GCCGGAGCGGCTGAACCAGATGTATTGCCCGACG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCTGACCCACTATCCCGAACTGCAGGGGTTCGTTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTAGAGCGCTACACCGAAGGCACGAGCGCCGCCC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCGTGCAGCCTGCGGAAGTAGGCCAGGAGGTCGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTTGAGCGTCCGCACATCTGCCAACAGCTCCCACA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CAACGCAGCCAAGTGGCCACGTAGGCTCTCGATC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ACCTCCCCCTCGGTGGCTTGGGGTACTCGGCCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TACTCTAGTTGTGCCCGCTCCGTCGGTCGGGGCATG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGAAGGCCTGCAGGAGGCATCATGACAACTAGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCAGGGCTTCTGGCAGAGCTTGGCGACGTTCCCGT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GGGTCGGGACTTATCGGCACTTGCGACCGTGCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTATGCGTCCGATCCACCGTACAAGTACTCGCCA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TACGAGGATCGCAGAGATCCTCGCAGAGGCCGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGAACGCGACCATCTCCGGCCACTCCTCATCACGGAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTCGGTCGGGGAGATTGAACTATGAAGGCGAGGTA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC

>CP034928|1|2|932550-933516|PILER-CR
	GAGCTCGTACCCGTACTGACGGGCGAGCTGGACCT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGGCGGGAGGACGCTCCACCCAGGGCGGGGAGGTC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTAGAGGCTCGGGCCTGGTGGGAGGAAAGCTGGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTGCCGACTTTGTGAATGGGTTCAAGGACAACAAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGGGAAGATCTAGGAGGGCTGAATGGCAACCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCCACGGGCGGGCTGCCACACCCGAGGCCGGGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TAGGAGGGGCCGTGGCCGGGATGAATGAAGCGTA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCATAGAGCACCGGTCTTCGCCACAGCAGCGCACCG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCCCGCCTGACCTCCTCCCCTGGGTGGGGCGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGGCAGGCCGCTCGCGAGCGGCTGCTGGCCCGGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGGCATCCTAGCTCACCTCCGCTGCGAGCTGGCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCCTTGACACACGGCTAGCCCTGCCTATAATGGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ATCTTCCCCGCCCATGATTTCTTGGGCGGAGGAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCTGCCCCAGGGGCTCAGGGAGAGCAGCCGAGAGT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGTAACCCGCGGCCCATTCCGGCCAGAAGATCGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCCGCGACCTCATCTTCCCCGCCCATGATCTC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTTGCTCGCAGTCGCAACGTGACCGTCCACGCTTAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TGGTTATACCACCACTTGCCCTGCTCATCTGCCTT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCGGCTGCTGGGTATTCTTGCGCGCCTTGGCCAAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCGGGCGGGACGGACTACGGCGGGGTGGCCCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCCATCCCGTGGGGAACGTTCAACTTCGGGATGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AATATACTTTGACACCTGCTTTTCAACCGTCCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGCTAGGATGCCTTGTGAAGCCGGTAAGGCCCGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTTGAGACGGAGCGGGTGCGGGATGAGCATGACAGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GACTTTCTTGGCTACGTGGACGTGCGGACCGATG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GCGGCTTCCGCCGCGACCCCTCAAGAAACCGAT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCACACAAAGGAGCGGTGCAGACTACGGAGCAA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CATCCTAAGTGGATCTTCCTCGGTTTTAGTCTA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCACCCTCTCCGCAAACGTGATCACGTGCACCCC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CGGGATGAGCTTCGGTTATTCCTGCAAGATCTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	AGCGTTCTTCGATGAGGCGGACCAGTGGCGGCAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCGGGAGGGAAGTAGCTCCCCGCCGCCCCCGGAC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GAGAAACCGCTGCTCGGAGCGCGTGAGTTGTAACG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ATTTGGCTTGACGAGCTTACAACGGACACAGTTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAACTTTGACTCCCGGCTCCAGTAGCCTTTGACTTCGAGTCGCCCCCCGCACGGGGGCGTGGATTGAAACGCCGGAGCGGCTGAACCAGATGTATTGCCCGACGGTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CCTGACCCACTATCCCGAACTGCAGGGGTTCGTTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTAGAGCGCTACACCGAAGGCACGAGCGCCGCCC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CTCGTGCAGCCTGCGGAAGTAGGCCAGGAGGTCGC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GTTGAGCGTCCGCACATCTGCCAACAGCTCCCACA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	CAACGCAGCCAAGTGGCCACGTAGGCTCTCGATC
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	ACCTCCCCCTCGGTGGCTTGGGGTACTCGGCCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TACTCTAGTTGTGCCCGCTCCGTCGGTCGGGGCATG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGAAGGCCTGCAGGAGGCATCATGACAACTAGA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCAGGGCTTCTGGCAGAGCTTGGCGACGTTCCCGT
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	GGGTCGGGACTTATCGGCACTTGCGACCGTGCGG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTATGCGTCCGATCCACCGTACAAGTACTCGCCA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TACGAGGATCGCAGAGATCCTCGCAGAGGCCGTG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TCGAACGCGACCATCTCCGGCCACTCCTCATCACGGAG
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC	TTCGGTCGGGGAGATTGAACTATGAAGGCGAGGTA
GTCGCCCCCCGCACGGGGGCGTGGATTGAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP034928.1\|QAA76706.1\|941869_942778_+\|tRNA-dimethylallyltransferase	unknown	unknown	gnl\|CDD\|234626
CP034928.1\|QAA76689.1\|927937_928651_+\|CRISPR-associated-RecB-family-exonuclease-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
CP034928.1\|QAA76702.1\|937883_938516_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223970
CP034928.1\|QAA76685.1\|922111_924409_+\|CRISPR-associated-helicase-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|350688
CP034928.1\|QAA76699.1\|935328_936204_+\|Pyridoxal-5'-phosphate-synthase-(glutamine-hydrolyzing),-synthase-subunit	unknown	unknown	gnl\|CDD\|179769
CP034928.1\|QAA76682.1\|918736_919795_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|223618
CP034928.1\|QAA76700.1\|936200_936785_+\|Pyridoxal-5'-phosphate-synthase-(glutamine-hydrolyzing),-glutaminase-subunit	unknown	unknown	gnl\|CDD\|237411
CP034928.1\|QAA76698.1\|934418_935045_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|238084
CP034928.1\|QAA76701.1\|936769_937813_+\|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	unknown	unknown	gnl\|CDD\|273675
CP034928.1\|QAA76683.1\|919860_920526_-\|membrane-metalloprotease	unknown	unknown	gnl\|CDD\|100079
CP034928.1\|QAA76691.1\|929685_929976_+\|CRISPR-associated-protein-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP034928.1\|QAA76688.1\|926912_927887_+\|CRISPR-associated-protein,-Csd2/Csh2-family	cas7	cd09689_cas7_CAS-I-C	gnl\|CDD\|377458
CP034928.1\|QAA76704.1\|939105_940809_+\|DNA-primase	unknown	unknown	gnl\|CDD\|235551
CP034928.1\|QAA76697.1\|933832_934258_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225117
CP034928.1\|QAA76690.1\|928647_929679_+\|CRISPR-associated-protein-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl\|CDD\|188360
CP034928.1\|QAA76686.1\|924436_925201_+\|CRISPR-associated-protein-Cas5	cas5	cd09752_cas5_CAS-I-C	gnl\|CDD\|187534
CP034928.1\|QAA76684.1\|920522_921980_-\|Fibronectin/fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|224212
CP034928.1\|QAA76705.1\|940811_941873_+\|RNA-polymerase-sigma-factor-RpoD	unknown	unknown	gnl\|CDD\|235640
CP034928.1\|QAA76703.1\|938531_939119_+\|MBL-fold-metallo-hydrolase-superfamily	unknown	unknown	gnl\|CDD\|293877
CP034928.1\|QAA76687.1\|925193_926900_+\|CRISPR-associated-protein,-Csd1-family	cas8c	cd09757_cas8c_CAS-I-C	gnl\|CDD\|378245

Protein	Function_ID	Function_description	E-value
CP034928.1\|QAA76706.1\|941869_942778_+\|tRNA-dimethylallyltransferase	gnl\|CDD\|234626	PRK00091, miaA, tRNA delta(2)-isopentenylpyrophosphate transferase; Reviewed.	1.27046e-126
CP034928.1\|QAA76689.1\|927937_928651_+\|CRISPR-associated-RecB-family-exonuclease-Cas4	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	1.96767e-37
CP034928.1\|QAA76702.1\|937883_938516_+\|hypothetical-protein	gnl\|CDD\|223970	COG1040, ComFC, Predicted amidophosphoribosyltransferases [General function prediction only].	8.87704e-30
CP034928.1\|QAA76685.1\|922111_924409_+\|CRISPR-associated-helicase-Cas3	gnl\|CDD\|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	3.26761e-48
CP034928.1\|QAA76699.1\|935328_936204_+\|Pyridoxal-5'-phosphate-synthase-(glutamine-hydrolyzing),-synthase-subunit	gnl\|CDD\|179769	PRK04180, PRK04180, pyridoxal 5'-phosphate synthase lyase subunit PdxS.	0
CP034928.1\|QAA76682.1\|918736_919795_-\|hypothetical-protein	gnl\|CDD\|223618	COG0544, Tig, FKBP-type peptidyl-prolyl cis-trans isomerase (trigger factor) [Posttranslational modification, protein turnover, chaperones].	1.13984e-43
CP034928.1\|QAA76700.1\|936200_936785_+\|Pyridoxal-5'-phosphate-synthase-(glutamine-hydrolyzing),-glutaminase-subunit	gnl\|CDD\|237411	PRK13525, PRK13525, pyridoxal 5'-phosphate synthase glutaminase subunit PdxT.	2.72162e-96
CP034928.1\|QAA76698.1\|934418_935045_+\|hypothetical-protein	gnl\|CDD\|238084	cd00146, PKD, polycystic kidney disease I (PKD) domain; similar to other cell-surface modules, with an IG-like fold; domain probably functions as a ligand binding site in protein-protein or protein-carbohydrate interactions; a single instance of the repeat is presented here. The domain is also found in microbial collagenases and chitinases.	4.40533e-05
CP034928.1\|QAA76701.1\|936769_937813_+\|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase	gnl\|CDD\|273675	TIGR01534, Glyceraldehyde-3-phosphate_dehydrogenase, glyceraldehyde-3-phosphate dehydrogenase, type I. This model represents glyceraldehyde-3-phosphate dehydrogenase (GAPDH), the enzyme responsible for the interconversion of 1,3-diphosphoglycerate and glyceraldehyde-3-phosphate, a central step in glycolysis and gluconeogenesis. Forms exist which utilize NAD (EC 1.2.1.12), NADP (EC 1.2.1.13) or either (1.2.1.59). In some species, NAD- and NADP- utilizing forms exist, generally being responsible for reactions in the anabolic and catabolic directions respectively. Two Pfam models cover the two functional domains of this protein; pfam00044 represents the N-terminal NAD(P)-binding domain and pfam02800 represents the C-terminal catalytic domain. An additional form of gap gene is found in gamma proteobacteria and is responsible for the conversion of erythrose-4-phosphate (E4P) to 4-phospho-erythronate in the biosynthesis of pyridoxine. This pathway of pyridoxine biosynthesis appears to be limited, however, to a relatively small number of bacterial species although it is prevalent among the gamma-proteobacteria. This enzyme is described by TIGR001532. These sequences generally score between trusted and noise to this GAPDH model due to the close evolutionary relationship. There exists the possiblity that some forms of GAPDH may be bifunctional and act on E4P in species which make pyridoxine and via hydroxythreonine and lack a separate E4PDH enzyme (for instance, the GAPDH from Bacillus stearothermophilus has been shown to posess a limited E4PD activity as well as a robust GAPDH activity). There are a great number of sequences in the databases which score between trusted and noise to this model, nearly all of them due to fragmentary sequences. It seems that study of this gene has been carried out in many species utilizing PCR probes which exclude the extreme ends of the consenses used to define this model. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model. [Energy metabolism, Glycolysis/gluconeogenesis].	1.02367e-139
CP034928.1\|QAA76683.1\|919860_920526_-\|membrane-metalloprotease	gnl\|CDD\|100079	cd06158, S2P-M50_like_1, Uncharacterized homologs of Site-2 protease (S2P), zinc metalloproteases (MEROPS family M50) which cleave transmembrane domains of substrate proteins, regulating intramembrane proteolysis (RIP) of diverse signal transduction mechanisms. Members of the S2P/M50 family of RIP proteases use proteolytic activity within the membrane to transfer information across membranes to integrate gene expression with physiologic stresses occurring in another cellular compartment. In eukaryotic cells they regulate such processes as sterol and lipid metabolism, and endoplasmic reticulum stress responses. In prokaryotes they regulate such processes as sporulation, cell division, stress response, and cell differentiation. This group includes bacterial, eukaryotic, and Archaeal S2P/M50s homologs with a minimal core protein and no PDZ domains.	1.5828e-56
CP034928.1\|QAA76691.1\|929685_929976_+\|CRISPR-associated-protein-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	4.29166e-32
CP034928.1\|QAA76688.1\|926912_927887_+\|CRISPR-associated-protein,-Csd2/Csh2-family	gnl\|CDD\|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	4.80005e-133
CP034928.1\|QAA76704.1\|939105_940809_+\|DNA-primase	gnl\|CDD\|235551	PRK05667, dnaG, DNA primase; Validated.	1.34804e-171
CP034928.1\|QAA76697.1\|933832_934258_-\|hypothetical-protein	gnl\|CDD\|225117	COG2207, AraC, AraC-type DNA-binding domain-containing proteins [Transcription].	1.14514e-09
CP034928.1\|QAA76690.1\|928647_929679_+\|CRISPR-associated-protein-Cas1	gnl\|CDD\|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	0
CP034928.1\|QAA76686.1\|924436_925201_+\|CRISPR-associated-protein-Cas5	gnl\|CDD\|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	4.71519e-63
CP034928.1\|QAA76684.1\|920522_921980_-\|Fibronectin/fibrinogen-binding-protein	gnl\|CDD\|224212	COG1293, COG1293, Predicted RNA-binding protein homologous to eukaryotic snRNP [Transcription].	1.37699e-51
CP034928.1\|QAA76705.1\|940811_941873_+\|RNA-polymerase-sigma-factor-RpoD	gnl\|CDD\|235640	PRK05901, PRK05901, RNA polymerase sigma factor; Provisional.	1.35232e-117
CP034928.1\|QAA76703.1\|938531_939119_+\|MBL-fold-metallo-hydrolase-superfamily	gnl\|CDD\|293877	cd16322, TTHA1623-like_MBL-fold, uncharacterized Thermus thermophilus TTHA1623 and related proteins; MBL-fold metallo hydrolase domain. Includes the MBL-fold metallo hydrolase domain of uncharacterized Thermus thermophilus TTHA1623 and related proteins. Members of this subgroup belong to the MBL-fold metallo-hydrolase superfamily which is comprised mainly of hydrolytic enzymes which carry out a variety of biological functions. This family includes homologs present in a wide range of bacteria and archaea and some eukaryota. Members of the MBL-fold metallo-hydrolase superfamily exhibit a variety of active site metallo-chemistry, TTHA1623 exhibiting a uniquely shaped putative substrate-binding pocket with a glyoxalase II-type metal-coordination mode.	1.50265e-58
CP034928.1\|QAA76687.1\|925193_926900_+\|CRISPR-associated-protein,-Csd1-family	gnl\|CDD\|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	3.5456e-102

>CP034928.1|QAA76691.1|929685_929976_+|CRISPR-associated-protein-Cas2
MLVVVAYDVNTQTPQGRRRLRRVAKACQNYGQRVQFSVFECLVEPAQWANLKQTLTEEICGDEDSLRFYFLGKNWKRRVEHVGATAAYDPEGSLIA
>CP034928.1|QAA76690.1|928647_929679_+|CRISPR-associated-protein-Cas1
MKRLLNTLFVTTQGAYLCREGETVCVRVEKETKLRVPIHTLSGIVCFGQVSCSPPLIGLCGERNVLISFHSEHGRFLGRVQGPISGNVLLRREQYRRADDLQAAAAIARNIVTAKVANCRTVVLRAVRDHATTTDTQALTKAAAELGRIAGALQQAGSLASVRGQEGDAAQTYFSVFNHLIVAQKSDFQFRERSRRPPLSSMNALLSFLYALLAHDVTAALESVGLDPAVGFLHRDRPGRPSLALDLMEELRPILADRLALTLVNLRKVRASGFTKTETGAVVMDDKTRKQVLVSWQKRKTEEITHPFLGERVAVGLLPYAQALLLARHLRGDLDGYPPYIWR
>CP034928.1|QAA76689.1|927937_928651_+|CRISPR-associated-RecB-family-exonuclease-Cas4
MYNEEDLLPLSALQHFVFCVRRAALIHLEGMWDENVATVEGQNLHARTHDGRTESRGDTRITRGLLLRSSRLGLSGKADVVEFHRLQPGKSDGVQLDGLEECWQPYPVEYKRGRLRPERSYEIQLCAQALCLEEMLGVGVPAGALFYGKTARRQEVVFDEGLRRQTEEAAARLHELFKQGETPEAVYVKNKCQQCSLLDLCLPRQAASSRSVGAYLARMTSPDLLAPRVEDGEGEGK
>CP034928.1|QAA76688.1|926912_927887_+|CRISPR-associated-protein,-Csd2/Csh2-family
MKEPIKNRYEFLFLFDCENGNPNGDPDMGNAPRVDPQDMHGLVSDVALKRRVRNYVQIKRGQDAIFVQQATALNRLIAEAHEETGGLPGKKGANKEKVGKARAWLCSRYYDVRTFGAVLSTGPNAGQVRGPVQFSFARSVDPILPLDVSVTRVATTDDKLPKTSGTEDYAKWEAERPEDGLRTMGRKALIPYGLYVGKGFISAHLAEGTGFSDDDLALFWEALLNMYEHDRSASKGLMSTREVFVFKHVGTDTDLEQRRRQAKLGCAPAHRLFDLVEISRKPGVKTPRRFEDYDVRFDSENLPKGVEVSFLVAGAKGYPPPEGK
>CP034928.1|QAA76687.1|925193_926900_+|CRISPR-associated-protein,-Csd1-family
MLEVLAKRAGAVEPGFGPKDVRWAIVCDERGTFREVLELGDTDAKRNCGQAFPVCPVMDRSVKQSGGKSEFLIDTAANVVLLGVAPEDAKGRAKHDYFVQLLREAGQAMPELAGLVRLLESQAELERVRERFIALGARPTESVTFKLGNAFPIESDRWHDWWRGKLAELTADRRAQGAAAGHMVCFATGDRVVPLPTHPKIKGLARLGGQRSGDVLVGFDKPAFQSYGLDQSTNAAVSKEAATAYSTALNALICKSSYELAGALVVHWFHYRVKPEEDLFSWLQDPPEGEERHARQRARDLLDSIASGQRADLAGNRYYALTLSGARGRVMVRDWMEGEFKELAENIRRWFEDVSIISCDGRIARDPRFLDVIGATARDLNDVAPPFMAKMWRVAVRCEPIPLAALAHALARVKEAVIGNKPFNHARMGLMKAYHIRSSREDGGKMKPNLNEEHPAPAYHCGRMMAVLAKLQQAALGDVGAGIVQRYYAAASATPALVLGRLVRGGQFHLNKLEPGLAHWYEEKLASISARLGDGVPQTLSLEEQSLFALGYYQQWVDLRTKRSDGSN
>CP034928.1|QAA76686.1|924436_925201_+|CRISPR-associated-protein-Cas5
MRPKDQALDVWGEFACFTRPELKVERFSYPVPTPSAVRGIYDAIYCKRTEFRWQVTAIEVLAPVRYISLRRNEVKDKVSTTNVQQWMTGRSPPEPIWADGTDVELGTDMKGRTQRQTMALCNVHYRLHAEIRPWPGFEDRLQAMEEQFRRRAAGGKCIHQPYFGCREFPAYFDLVDIDAQPPQRQPLDLDIGLMLYDVFDLSRPHGSLDTSRREDPDGVRSISLFRASVRDGLLSIPPYESDAVIKAQQGDTDA
>CP034928.1|QAA76685.1|922111_924409_+|CRISPR-associated-helicase-Cas3
MTCSAGTAGSTGQGPFIAHSRNHAGRTDPLRAHLSAVAERAAEFAREFGAEEEAALAGLLHDLGKYGDLFQKRLRGEVQGIDHWSPGAWAALEKYKELGIASALAIQGHHVGLQRADRDNLASMNPDKWDPALHAQRQLSETRTDLLIERFRAEGLTLPPLRTSLYDHSEKAVSAMLDVRMLFSALVDADFLVTEAHFNEGEDTRRRPGPPLDPARALELLLTHTTQLAAGSDAAAAVSKLRSDLLSACLAAGEKPVGQFTLTAPTGSGKTLAMLAFALKHAAVHNLRRIVMVIPYLSIIDQTAAVFRSILERDLGPGYVLEHHSLAGTRGHDQGEGTGEDRERELSEDWDAPIVLTTSVQMLESLFANRPSACRKLHRLARSVILFDEVQTLPTNLAIPTLAALSRLSGRYGASVVFATATQPAFSHLDAHVRKWCSQGWQPTEIVPTNLRLFARLRRTKVEWPDPDTPVSWDKLADSLADDECRQALCVVNLKRHALLLFEKLCHCLGDDADLFHLSTNMCPAHRWAVLNEVRRRLEAGSSCRLISTQCVEAGVDVDFPIAFRAWGPLDAIVQVAGRCNRNGRHPIGRMRVFVPEDDRYPEGGYRQAASVARLVAASRTLDIDDPDLYAEYYRELYAFARLQDRNEELLDAITRRDFAQVAEHYHVIPDGTVNVLVPYDLRTYDELASAARREGISRRWIRQARPHTVGLYRAKSKEATWDWLEPVRSGRDREVDDWYVYLRPEHYNGKTGLCPPQSMDFLNG
>CP034928.1|QAA76684.1|920522_921980_-|Fibronectin/fibrinogen-binding-protein
MEGIELRKALEESRLFVGARLSKVHQVGEVFFLRFYGPSGALVLDPRGKAFHRTALRPLVPPSPPPFCMRLRSLAGQPLLSLDQAGFDRVVRLRFPQADLILDLRPRQGDLFFVPRDGETVSLRGGHLHAADFAASSDPSVGLGPALRRAAAAHLGRAPREEESASFAANLLDRTPTGFVYDENDRPVASFFPRPDLGEPRLTFPAFWQALDHLLDRRIGADLAHSQLAQVERAIGRRERALAALAAAEAEAQGWPEVQGMADLLLTRIADIPRGASAATVEGFDGQPVTLSLNPALSVAAQATALYAKAKKLRRRLEEIPVRRRALETELRRLRDLQGLLTRQPDLAGYVEDEAQTLTASSPGRATTVPRSRVLTMGGFSVEIGRSARENDRLVRSARACDLWLHARGVPGAHVVIHTGGRPVPREVLQRAAELAAWHSRARGERKVPISYTEARYVRRPRGAAPGMVTLQQEQVIVVPGDKGP
>CP034928.1|QAA76683.1|919860_920526_-|membrane-metalloprotease
MTDLIYGLLAVGALLACVIPHEVAHGYVAWKLGDPTAKAAGRLTLNPIQHLDPIGSLILPLGLLLLRRYAGFPIVFGWAKPVPINPYYFRDTWGGMLYVSLAGPGTNVAMGLLAAGIGRALVALGVTNAYVLAFFALVVLLSFVLALFNLVPVPPLDGSKILAYFLPVRWRIALLRWEQFGFVIVVALLLLGVLQGVFMGAEAITFRLVGIRWALLSRLWG
>CP034928.1|QAA76682.1|918736_919795_-|hypothetical-protein
MLSVEVPAEAIRKKEQDLLALARARLNVPGFRPGRAPEHLVRRQYGEDEFIHDLKDDLIQEWLTRALSELGLHPVSTPTVETTAFDSGRRLAFRARFAVLPEVTIPDELAVDVPEPPAASITDEEVEGVLAGLRRDVAVLEPRGGPAQEGDVVRLERAGRDWEGEATATRPIGKQLLGATAGARVVLTDESGQSEAFAVTGVYRVVLPTPDETARHYGHSSWDAFAAAVREELHRVAEARRKTAWRLAALDAAADALQVEVPPSLLAESVADEMRELRLGPGQKPQLEGAVRRKLRREIVAQRLAEAKGLRPDEDEVRRRTEGRDRDEAAVRASLLLEQAADWIIAHARRNG
>CP034928.1|QAA76697.1|933832_934258_-|hypothetical-protein
MGGPTEVHQVSRQEDERRVERVLPQPHDHLAGDLSLHTLARVANFSPYHFHRGFRAIVGEPVGTFVRRLRVLTAAHHLAEDRARPITANARACGVLRVPGLPPAPRSVDRRLRASHAEKFIRDACGPIRACDRRTVHPPIP
>CP034928.1|QAA76698.1|934418_935045_+|hypothetical-protein
MGGKRVAAAIGVVVGAGLLTGCCLFSGNPTVTIMGPSTATVGQSVTFMAQATGGGGTYTYVWMGAMGQGAMATATFTSPGSQVVMVTVTDNCGKTASAQWTVTVTGDSPSGNLSGMWSGTIYDNRGDSMQFSLQLTHVGTNVTGTAYGGGLSSSGSGSYAAGQFQFQFQWWRTTTVVTLVGTYNPGANELSGDWMIGGLRGGSWRVRR
>CP034928.1|QAA76699.1|935328_936204_+|Pyridoxal-5'-phosphate-synthase-(glutamine-hydrolyzing),-synthase-subunit
MDKGTYRVKTGFAEMFKGGVIMDVTTADQARIAEEAGAVAVMALERVPADIRAQGGVARMADPMRIKEIQAAVSIPVMAKARIGHFAEARILEALGVDFIDESEVLTPADPFHHIDKWLFKVPFVCGCRDLGEAARRIAEGAAMIRTKGEAGTGNVIEAVRHMRLLNDQIKRLAGMSRAELVSYGKELGAPAEILELVQAEGRLPVVNFAAGGIATPADAALMRMLGCDGVFVGSGIFKSADPEKRARAIVLACTHFDDPQVLAEVSAGLGEAMPGLPIEAIPDQELMQHR
>CP034928.1|QAA76700.1|936200_936785_+|Pyridoxal-5'-phosphate-synthase-(glutamine-hydrolyzing),-glutaminase-subunit
MTIGVLAVQGDVREHLRTVGRLAAEARPVLRPDHLVGLDGIILPGGESTAMWRLMTQTGLAASLREAVGRGLPAFGTCAGMILLAREITNWPQTFLGVLDIAVERNATGRQVDSFEARIATDGLGELPAVFIRAPMVRRMGPRVEALGKLGDVPVLVREGRLLAASFHPELTGDDRVHALFIRMCQKGEPCQHA
>CP034928.1|QAA76701.1|936769_937813_+|NAD-dependent-glyceraldehyde-3-phosphate-dehydrogenase
MSARVAINGFGRIGRIALRIIAQNGWPVEVVGINDPFLPAATAAHLLRYDSVYGRAPFSVRLAGGDLVADGRTIPFLAEKDPAQLPWGQHRVDVVIESSGVFTDPDKAEAHLKAGAKRIVLSAPPSGPRKGEVLQILWRVNEEQFAEKGKPAIVSAASCTTNSLGPVVKVLHDAFGIEHGFLTTVHGYTADQRLVDAPHKDLARARAAAVNIIPTSTGAARSIPAIFPDLKGKMDGIATRVPVPAGSISDFTATLRRAPGATAEAAVSAVNRAFEEAARGPLGEVMLVTGDPIVSSDVLGESHSCVVATAYTMALPQAPSVVKILAFYDNEWGYTARLVDVARFVTA
>CP034928.1|QAA76702.1|937883_938516_+|hypothetical-protein
MPVLAPVCERCLRTLPRWDGAVCIVCGTGIEEGLDLCRTCAVQGHPYAWAKTIGPYEGGLRRLIRGLKYEGERALAWPLGRLLAQQVDRPVAPVVTCVPPDPRRLQDRGYHAAELLGATVARGLGVQFRRLLIKRRSTPPQVGRARPERKRAMEGLFAARTRGAGEAALVVDDVITTGATIAEAARALIDAGFGEVGVLACAQAVVGREV
>CP034928.1|QAA76703.1|938531_939119_+|MBL-fold-metallo-hydrolase-superfamily
MVVGSLRTNAYVLAADGEAALVDPGDAAPHLDTAWDGHLLRYILLTHGHFDHADGAEIVHARTGAPVLYHPDEASTFWTMGRRPPPLGQALAEGARLPLGGDELVVWHLPGHSPGSVAFLWEKGKVAVVGDVLFARSVGRSDLPGGSWDVLRRSLSRLLGLDDEWRILPGHGPATSIGQERLHNPYLQDLDHARP
>CP034928.1|QAA76704.1|939105_940809_+|DNA-primase
MPGRELEEVKARVDIVELIGRYVALRPSGQRFKGRCPFHPDDTPSFIVSPDKGLWHCFGCHAGGDAIGFLMKVERLSFPEALARLAQELGVEIHASGGEGRARLLQVNQQAVEFFARELRKPSGRKARDYLLSRGLGEELWERHKLGYAPEGWDGLLRALGRVGTEILRELGLVIAGERGYYDRFRDRVMFTLCDDQGRPVAFAGRSFAGEPKYLNTPNTALFTKGTLLYGLDLARDAIRSTGRAVLVEGYTDVISFHAAGIGEAIGSMGTALTDAQARLIARHTDHVVIAYDRDAAGEASALRGLVILRAAGLQVGVAVLPPGEDPDSLVRRHGAEAAREVLAHALPFHRFFVEAMASRHEISTVEGKERVLIEAKTFWPEIRSVPLQHEVARELSSMLALREEEVWRYLQAEARSASLPEARARVGPEEIFVHFLIEGKLPDHALEQLDLEEFRPEHRPIVAKWLELWHEGQRPTAAALAADLSPEQVDILTRVALLEVPFSDEAQAVEDAVTRFLYLPRVNRRLSETRRQLAAAEAAGDTGRVQALNSELQALCQERMRILRRR
>CP034928.1|QAA76705.1|940811_941873_+|RNA-polymerase-sigma-factor-RpoD
MPDEIDIVPPEVREPGAAAEEEELSDLIPLIAELADSEPEEEPAERGRDPVRTYLREIGRVPLLTREEEAELAQKVEAGTAALEELNQGVVDPQRKAELEKVIQEGDAARERLAVSNLRLVVSIAKRYMHRGLSFLDLIQEGNIGLMRAVEKFDWRKGYKFSTYATWWIRQAITRAIGDQARTIRVPVHTMEAVQELGRLRREYIREHGAAPTYEQLAELLGTSVDRVKKIEQAAAFTTSLERPLSDDDDDTLGDFIADVSAQSPVREALRARLRDELRDALTELDPREREILELRYGLIDGHPRTLKEVASQFEITRERVRQLELKALEKLKYPARHRSLRSLRELLLSEEE
>CP034928.1|QAA76706.1|941869_942778_+|tRNA-dimethylallyltransferase
MTVLLLLGPTATGKSAVAGVVAEAVGAEVISADARAVYRGLEIGTDRPPPSVLARVPHHLVGVLDPVERYDAAAFRRDCERIVAEIHARGRRAVIVGGSTLYVRALTRGLFPGPAAQPHLREELARRPLAELHAELARVDPASAARIHPSDRVRIVRALEVHRLTGRPLSGCWGQERTFPFPLVKVALTVERGELHRRIEARVARMFDRGLVEEARRLWKSGVPHDAPAARTIGYQELFPFFAGEYDLDEARRRIVRNTKAYARRQLAFFRAESDVDWIDVTGRPVADVAGEVLARWRGAEG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP034928_1	1.20\|931460\|34\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	931460-931493	34	KF024733	Mycobacterium phage Medusa, complete genome	28012-28045	8	0.765
CP034928_1	1.20\|931460\|34\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	931460-931493	34	MT889382	Mycobacterium phage TroyPia, complete genome	28011-28044	8	0.765
CP034928_1	1.10\|930794\|34\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	930794-930827	34	NZ_CP007129	Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence	142755-142788	9	0.735
CP034928_1	1.15\|931126\|34\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	931126-931159	34	NZ_CP050138	Sphingomonas sp. CL5.1 plasmid pTSSC1, complete sequence	91542-91575	9	0.735
CP034928_1	1.16\|931192\|33\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	931192-931224	33	NC_015057	Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence	250073-250105	9	0.727
CP034928_1	1.30\|932120\|33\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	932120-932152	33	NZ_CP021798	Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence	168885-168917	9	0.727
CP034928_1	1.30\|932120\|33\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	932120-932152	33	NC_003037	Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence	548353-548385	9	0.727
CP034928_1	1.30\|932120\|33\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	932120-932152	33	NZ_CP021813	Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence	1081300-1081332	9	0.727
CP034928_1	1.30\|932120\|33\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	932120-932152	33	NZ_CP026526	Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence	900043-900075	9	0.727
CP034928_1	1.30\|932120\|33\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	932120-932152	33	NZ_CP019483	Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence	497070-497102	9	0.727
CP034928_1	1.30\|932120\|33\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	932120-932152	33	NZ_CP019486	Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence	470768-470800	9	0.727
CP034928_1	1.30\|932120\|33\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	932120-932152	33	NC_020527	Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence	548021-548053	9	0.727
CP034928_1	1.45\|933115\|35\|CP034928\|CRISPRCasFinder,CRT,PILER-CR	933115-933149	35	NZ_CP022994	Paraburkholderia aromaticivorans strain BN5 plasmid pBN4, complete sequence	124173-124207	9	0.743
CP034928_1	1.48\|933314\|34\|CP034928\|CRISPRCasFinder,CRT,PILER-CR	933314-933347	34	NZ_CP017300	Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence	85919-85952	9	0.735
CP034928_1	1.48\|933314\|34\|CP034928\|CRISPRCasFinder,CRT,PILER-CR	933314-933347	34	NZ_CP034154	Rhodococcus sp. NJ-530 plasmid unnamed2, complete sequence	195310-195343	9	0.735
CP034928_1	1.10\|930794\|34\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	930794-930827	34	NZ_AP014705	Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence	366310-366343	10	0.706
CP034928_1	1.10\|930794\|34\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	930794-930827	34	NZ_LR134466	Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence	44191-44224	10	0.706
CP034928_1	1.10\|930794\|34\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	930794-930827	34	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	1228598-1228631	10	0.706
CP034928_1	1.16\|931192\|33\|CP034928\|PILER-CR,CRISPRCasFinder,CRT	931192-931224	33	NC_034248	Rhizobium phage RHEph10, complete genome	81732-81764	10	0.697
CP034928_1	1.38\|932649\|34\|CP034928\|CRISPRCasFinder,CRT,PILER-CR	932649-932682	34	NZ_AP018921	Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence	39063-39096	10	0.706
CP034928_1	1.40\|932782\|35\|CP034928\|CRISPRCasFinder,CRT,PILER-CR	932782-932816	35	NZ_CP021767	Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence	183415-183449	10	0.714
CP034928_1	1.40\|932782\|35\|CP034928\|CRISPRCasFinder,CRT,PILER-CR	932782-932816	35	NZ_CP012944	Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence	22062-22096	10	0.714
CP034928_1	1.40\|932782\|35\|CP034928\|CRISPRCasFinder,CRT,PILER-CR	932782-932816	35	CP047137	Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence	1740364-1740398	10	0.714
CP034928_1	1.45\|933115\|35\|CP034928\|CRISPRCasFinder,CRT,PILER-CR	933115-933149	35	NZ_CP006990	Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence	616610-616644	11	0.686
CP034928_1	1.45\|933115\|35\|CP034928\|CRISPRCasFinder,CRT,PILER-CR	933115-933149	35	NZ_CP021127	Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence	539859-539893	11	0.686
CP034928_1	1.45\|933115\|35\|CP034928\|CRISPRCasFinder,CRT,PILER-CR	933115-933149	35	CP007644	Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence	599096-599130	11	0.686

1. spacer 1.20|931460|34|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to KF024733 (Mycobacterium phage Medusa, complete genome) position: , mismatch: 8, identity: 0.765

ctcgggcgggacggactacggcggg----gtggccctg	CRISPR spacer
ctcgggcgggtcggactacgacgggcccaacggc----	Protospacer
********** *********.****    ..***

2. spacer 1.20|931460|34|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to MT889382 (Mycobacterium phage TroyPia, complete genome) position: , mismatch: 8, identity: 0.765

ctcgggcgggacggactacggcggg----gtggccctg	CRISPR spacer
ctcgggcgggtcggactacgacgggcccaacggc----	Protospacer
********** *********.****    ..***

3. spacer 1.10|930794|34|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP007129 (Gemmatirosa kalamazoonesis strain KBS708 plasmid 1, complete sequence) position: , mismatch: 9, identity: 0.735

cggcaggccgctcgcgagcggctgctggcccgga	CRISPR spacer
ccgggggccgcgcgcgagcggctgctcgccgaac	Protospacer
* * .****** ************** *** ..

4. spacer 1.15|931126|34|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050138 (Sphingomonas sp. CL5.1 plasmid pTSSC1, complete sequence) position: , mismatch: 9, identity: 0.735

cgtaacccgcggcccattccggccagaagatcgc	CRISPR spacer
tgaggcacgcggcccattgcggcccgaagatcat	Protospacer
.* ..* *********** ***** *******..

5. spacer 1.16|931192|33|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NC_015057 (Granulicella tundricola MP5ACTX9 plasmid pACIX901, complete sequence) position: , mismatch: 9, identity: 0.727

tcccgcgacctcatcttccccgcccatgatctc	CRISPR spacer
tcccgcctcctcatcttccccgccgtcctcatc	Protospacer
******  ****************  .  . **

6. spacer 1.30|932120|33|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021798 (Sinorhizobium meliloti strain USDA1106 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.727

cgggatgagcttcggttattcctgcaagatctg	CRISPR spacer
tgggatgatcttcggttgttcctgcacgtcgct	Protospacer
.******* ********.******** * . .

7. spacer 1.30|932120|33|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NC_003037 (Sinorhizobium meliloti 1021 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.727

cgggatgagcttcggttattcctgcaagatctg	CRISPR spacer
tgggatgatcttcggttgttcctgcacgtcgct	Protospacer
.******* ********.******** * . .

8. spacer 1.30|932120|33|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021813 (Sinorhizobium meliloti strain M270 plasmid psymA, complete sequence) position: , mismatch: 9, identity: 0.727

cgggatgagcttcggttattcctgcaagatctg	CRISPR spacer
tgggatgatcttcggttgttcctgcacgtcgct	Protospacer
.******* ********.******** * . .

9. spacer 1.30|932120|33|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026526 (Sinorhizobium meliloti strain AK21 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.727

cgggatgagcttcggttattcctgcaagatctg	CRISPR spacer
tgggatgatcttcggttgttcctgcacgtcgct	Protospacer
.******* ********.******** * . .

10. spacer 1.30|932120|33|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019483 (Sinorhizobium meliloti strain B401 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.727

cgggatgagcttcggttattcctgcaagatctg	CRISPR spacer
tgggatgatcttcggttgttcctgcacgtcgct	Protospacer
.******* ********.******** * . .

11. spacer 1.30|932120|33|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019486 (Sinorhizobium meliloti strain B399 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.727

cgggatgagcttcggttattcctgcaagatctg	CRISPR spacer
tgggatgatcttcggttgttcctgcacgtcgct	Protospacer
.******* ********.******** * . .

12. spacer 1.30|932120|33|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NC_020527 (Sinorhizobium meliloti 2011 plasmid pSymA, complete sequence) position: , mismatch: 9, identity: 0.727

cgggatgagcttcggttattcctgcaagatctg	CRISPR spacer
tgggatgatcttcggttgttcctgcacgtcgct	Protospacer
.******* ********.******** * . .

13. spacer 1.45|933115|35|CP034928|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP022994 (Paraburkholderia aromaticivorans strain BN5 plasmid pBN4, complete sequence) position: , mismatch: 9, identity: 0.743

tcagggcttctggcagagcttggcgacgttcccgt	CRISPR spacer
gcgcagcttccggcagagcttggcgaggttgtcgg	Protospacer
 *. .*****.*************** *** .**

14. spacer 1.48|933314|34|CP034928|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP017300 (Rhodococcus sp. YL-1 plasmid pYLC1, complete sequence) position: , mismatch: 9, identity: 0.735

tacgaggatcgcagagatcctcgcagaggccgtg	CRISPR spacer
ggcgaggatcgcagcgatcctcgccgatgacaac	Protospacer
 .************ ********* ** * *.

15. spacer 1.48|933314|34|CP034928|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP034154 (Rhodococcus sp. NJ-530 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.735

tacgaggatcgcagagatcctcgcagaggccgtg	CRISPR spacer
ggcgaggatcgcagcgatcctcgccgatgacaac	Protospacer
 .************ ********* ** * *.

16. spacer 1.10|930794|34|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NZ_AP014705 (Methylobacterium aquaticum strain MA-22A plasmid pMaq22A_1p, complete sequence) position: , mismatch: 10, identity: 0.706

cggcaggccgctcgcgagcggctgctggcccgga	CRISPR spacer
gacccggccgcccgcgagcggctgctgaccttcg	Protospacer
 . * ******.***************.**.  .

17. spacer 1.10|930794|34|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR134466 (Tsukamurella tyrosinosolvens strain NCTC13231 plasmid 24, complete sequence) position: , mismatch: 10, identity: 0.706

cggcaggccgctcgcgagcggctgctggcccgga	CRISPR spacer
gacctcgccgcgcgcgagcggctgctgaccacgg	Protospacer
 . *  ***** ***************.**  *.

18. spacer 1.10|930794|34|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 10, identity: 0.706

cggcaggccgctcgcgagcggctgctggcccgga	CRISPR spacer
tggcaggcagctcgcgagctgctgcgaagccccg	Protospacer
.******* ********** ***** .. **  .

19. spacer 1.16|931192|33|CP034928|PILER-CR,CRISPRCasFinder,CRT matches to NC_034248 (Rhizobium phage RHEph10, complete genome) position: , mismatch: 10, identity: 0.697

tcccgcgacctcatcttccccgcccatgatctc	CRISPR spacer
acccgctacctcaacttccccgccctcctctac	Protospacer
 ***** ****** *********** .  .. *

20. spacer 1.38|932649|34|CP034928|CRISPRCasFinder,CRT,PILER-CR matches to NZ_AP018921 (Pseudonocardia autotrophica strain NBRC 12743 plasmid pPA12743CP, complete sequence) position: , mismatch: 10, identity: 0.706

gtagagcgctacaccgaaggcacgagcgccgccc	CRISPR spacer
accacgcgcaacaccgacggcacgagcgccagcg	Protospacer
.. . **** ******* ************. *

21. spacer 1.40|932782|35|CP034928|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021767 (Ralstonia solanacearum strain RS 489 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

gttgagcgtccgcacatctgccaacagctcccaca	CRISPR spacer
gttgagcgtcggcacatctgcaaacgttggcttcg	Protospacer
********** ********** ***. .  *. *.

22. spacer 1.40|932782|35|CP034928|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP012944 (Ralstonia solanacearum strain IBSBF1503 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

gttgagcgtccgcacatctgccaacagctcccaca	CRISPR spacer
gttgagcgtcggcacatctgcaaacgttggcttcg	Protospacer
********** ********** ***. .  *. *.

23. spacer 1.40|932782|35|CP034928|CRISPRCasFinder,CRT,PILER-CR matches to CP047137 (Ralstonia solanacearum strain CFBP 8697 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.714

gttgagcgtccgcacatctgccaacagctcccaca	CRISPR spacer
gttgagcgtcggcacatctgcaaacgttggcttcg	Protospacer
********** ********** ***. .  *. *.

24. spacer 1.45|933115|35|CP034928|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP006990 (Rhizobium sp. IE4771 plasmid pRetIE4771d, complete sequence) position: , mismatch: 11, identity: 0.686

tcagggcttctggcagagcttggcgacgttcccgt	CRISPR spacer
cgttagcgtctggccgagcttggcgacgttgatct	Protospacer
.   .** ****** ***************  . *

25. spacer 1.45|933115|35|CP034928|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021127 (Rhizobium sp. Kim5 plasmid pRetKim5c, complete sequence) position: , mismatch: 11, identity: 0.686

tcagggcttctggcagagcttggcgacgttcccgt	CRISPR spacer
cgttagcgtctggccgagcttggcgacgttgatct	Protospacer
.   .** ****** ***************  . *

26. spacer 1.45|933115|35|CP034928|CRISPRCasFinder,CRT,PILER-CR matches to CP007644 (Rhizobium etli bv. phaseoli str. IE4803 plasmid pRetIE4803c, complete sequence) position: , mismatch: 11, identity: 0.686

tcagggcttctggcagagcttggcgacgttcccgt	CRISPR spacer
cgttagcgtctggccgagcttggcgacgttgatct	Protospacer
.   .** ****** ***************  . *

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1533610 : 1540523

Acanthamoeba_polyphaga_mimivirus(16.67%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAA77273.1\|1533610_1534069_+	Methylated-DNA--protein-cysteine methyltransferase	A0A0G2Y1B6	Acanthamoeba_polyphaga_mimivirus	2.5e-17	46.4
QAA77274.1\|1534255_1534972_-	Branched-chain amino acid transport ATP-binding protein LivG	A0A2H4PQG7	Staphylococcus_phage	8.6e-20	29.4
QAA77275.1\|1534955_1535726_-	hypothetical protein	NA	NA	NA	NA
QAA77276.1\|1535850_1537440_-	CTP synthase	A0A1J0FA14	Only_Syngen_Nebraska_virus	1.5e-128	45.6
QAA77277.1\|1537534_1537765_+	hypothetical protein	NA	NA	NA	NA
QAA77278.1\|1537775_1538765_+	Oligopeptide transport ATP-binding protein OppD	G3M9Y6	Bacillus_virus	3.5e-11	26.8
QAA77279.1\|1538761_1539799_+	Oligopeptide transport ATP-binding protein OppF	G9BWD6	Planktothrix_phage	1.4e-15	29.7
QAA77280.1\|1539902_1540523_+	Nucleoside 5-triphosphatase RdgB (dHAPTP, dITP, XTP-specific)	A0A2H4V901	Ugandan_cassava_brown_streak_virus	2.9e-08	30.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage