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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035226 Bacillus subtilis strain SRCM103517 chromosome, complete genome 1 crisprs csa3,DEDDh,WYL,DinG,cas3,RT 1 1 13 0
CP035227 Bacillus subtilis strain SRCM103517 plasmid unnamed1 0 crisprs csa3 0 0 0 0

Results visualization

1. CP035226
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035226_3 3134837-3134944 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP035226_1 1.1|749197|49|CP035226|CRISPRCasFinder 749197-749245 49 CP035226.1 749245-749293 2 0.959

1. spacer 1.1|749197|49|CP035226|CRISPRCasFinder matches to position: 749245-749293, mismatch: 2, identity: 0.959

gcctggaacagcgccaccgccaataccagggccggagccgccgccaaag	CRISPR spacer
gcctggaacagcaccaccgccaatgccagggccggagccgccgccaaag	Protospacer
************.***********.************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035226_3 3.1|3134861|60|CP035226|CRISPRCasFinder 3134861-3134920 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
CP035226_3 3.1|3134861|60|CP035226|CRISPRCasFinder 3134861-3134920 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
CP035226_3 3.1|3134861|60|CP035226|CRISPRCasFinder 3134861-3134920 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
CP035226_3 3.1|3134861|60|CP035226|CRISPRCasFinder 3134861-3134920 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
CP035226_3 3.1|3134861|60|CP035226|CRISPRCasFinder 3134861-3134920 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
CP035226_3 3.1|3134861|60|CP035226|CRISPRCasFinder 3134861-3134920 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
CP035226_3 3.1|3134861|60|CP035226|CRISPRCasFinder 3134861-3134920 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
CP035226_3 3.1|3134861|60|CP035226|CRISPRCasFinder 3134861-3134920 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
CP035226_3 3.1|3134861|60|CP035226|CRISPRCasFinder 3134861-3134920 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 3.1|3134861|60|CP035226|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 3.1|3134861|60|CP035226|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 3.1|3134861|60|CP035226|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 3.1|3134861|60|CP035226|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 3.1|3134861|60|CP035226|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 3.1|3134861|60|CP035226|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 3.1|3134861|60|CP035226|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 3.1|3134861|60|CP035226|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 3.1|3134861|60|CP035226|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 667682 : 676047 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 1204259 : 1238165 41 Planktothrix_phage(20.0%) coat,tRNA NA
DBSCAN-SWA_3 1249126 : 1284336 51 uncultured_Caudovirales_phage(39.29%) integrase,tail,capsid,terminase,portal,head attL 1245306:1245319|attR 1253262:1253275
DBSCAN-SWA_4 1344133 : 1376459 45 Bacillus_phage(30.3%) plate,tail,terminase,portal,holin NA
DBSCAN-SWA_5 1895078 : 1901643 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_6 2177608 : 2226429 81 Bacillus_phage(95.08%) integrase attL 2220915:2220930|attR 2226439:2226454
DBSCAN-SWA_7 2232560 : 2250509 33 Bacillus_phage(95.65%) NA NA
DBSCAN-SWA_8 2254800 : 2272400 22 Bacillus_phage(95.0%) integrase attL 2259186:2259202|attR 2279293:2279309
DBSCAN-SWA_9 2280925 : 2304266 25 Bacillus_phage(88.24%) bacteriocin,holin NA
DBSCAN-SWA_10 2447188 : 2453284 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_11 2806287 : 2859757 56 uncultured_Mediterranean_phage(12.5%) protease,coat,tRNA NA
DBSCAN-SWA_12 3817397 : 3841214 26 Staphylococcus_phage(66.67%) bacteriocin,protease,tRNA NA
DBSCAN-SWA_13 3870814 : 3921431 54 Enterobacteria_phage(25.0%) coat,holin NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage