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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035231 Bacillus subtilis strain SRCM103571 chromosome, complete genome 1 crisprs csa3,cas3,DEDDh,WYL,DinG 0 1 11 0

Results visualization

1. CP035231
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035231_2 3054747-3054854 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035231_2 2.1|3054771|60|CP035231|CRISPRCasFinder 3054771-3054830 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
CP035231_2 2.1|3054771|60|CP035231|CRISPRCasFinder 3054771-3054830 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
CP035231_2 2.1|3054771|60|CP035231|CRISPRCasFinder 3054771-3054830 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
CP035231_2 2.1|3054771|60|CP035231|CRISPRCasFinder 3054771-3054830 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
CP035231_2 2.1|3054771|60|CP035231|CRISPRCasFinder 3054771-3054830 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
CP035231_2 2.1|3054771|60|CP035231|CRISPRCasFinder 3054771-3054830 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
CP035231_2 2.1|3054771|60|CP035231|CRISPRCasFinder 3054771-3054830 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
CP035231_2 2.1|3054771|60|CP035231|CRISPRCasFinder 3054771-3054830 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
CP035231_2 2.1|3054771|60|CP035231|CRISPRCasFinder 3054771-3054830 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|3054771|60|CP035231|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|3054771|60|CP035231|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|3054771|60|CP035231|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|3054771|60|CP035231|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|3054771|60|CP035231|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|3054771|60|CP035231|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|3054771|60|CP035231|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|3054771|60|CP035231|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|3054771|60|CP035231|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 152393 : 188736 39 Bacillus_phage(55.56%) tRNA,integrase,portal,capsid,terminase,tail attL 165319:165366|attR 195806:195853
DBSCAN-SWA_2 664507 : 711221 66 uncultured_Caudovirales_phage(40.0%) tRNA,integrase,portal,capsid,head,terminase,protease,tail attL 664536:664552|attR 682367:682383
DBSCAN-SWA_3 757908 : 766274 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 1257392 : 1291507 41 Planktothrix_phage(20.0%) tRNA,coat NA
DBSCAN-SWA_5 1316866 : 1399995 96 Bacillus_phage(27.5%) holin,tRNA,portal,coat,terminase,protease,plate,tail NA
DBSCAN-SWA_6 1906834 : 1913389 7 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_7 2320500 : 2326596 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_8 2713591 : 2767060 56 uncultured_Mediterranean_phage(12.5%) protease,tRNA,coat NA
DBSCAN-SWA_9 3240663 : 3298591 76 Bacillus_phage(39.02%) holin,integrase,portal,coat,capsid,head,terminase,protease,tail attL 3239331:3239351|attR 3279791:3279811
DBSCAN-SWA_10 3753821 : 3773854 22 Staphylococcus_phage(50.0%) tRNA,bacteriocin,protease NA
DBSCAN-SWA_11 3803453 : 3853368 52 Enterobacteria_phage(25.0%) holin,coat NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage