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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035233 Bacillus glycinifermentans strain SRCM103574 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0
CP035232 Bacillus glycinifermentans strain SRCM103574 chromosome, complete genome 1 crisprs csa3,WYL,DinG,DEDDh,cas3 0 1 19 0

Results visualization

1. CP035232
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035232_1 3539248-3539355 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NZ_CP015439 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence 255884-255939 6 0.893
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10424-10479 7 0.875
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70771-70826 7 0.875
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 835-890 7 0.875
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75822-75877 7 0.875
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1967-2022 7 0.875
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64780-64835 7 0.875
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1325-1380 7 0.875
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483788-483843 8 0.857
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NC_004604 Bacillus megaterium QM B1551 plasmid pBM400, complete sequence 46417-46472 9 0.839
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 CP031730 Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence 5220-5275 11 0.804
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NZ_CP041068 Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence 36188-36243 11 0.804
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NZ_CP032535 Bacillus megaterium NCT-2 plasmid pNCT2_7, complete sequence 36096-36151 11 0.804
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 CP041516 Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence 17877-17932 11 0.804
CP035232_1 1.1|3539274|56|CP035232|CRISPRCasFinder 3539274-3539329 56 NC_048753 Lactobacillus phage 3-521, complete genome 13552-13607 11 0.804

1. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 6, identity: 0.893

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccactaaactacacccgcatattatatacg	Protospacer
********************************************** *...**. *

2. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.875

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccactaaactacacccgcatattttaaagt	Protospacer
********************************************** *. .* .* 

3. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.875

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccactaaactacacccgcatattttaaagt	Protospacer
********************************************** *. .* .* 

4. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.875

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccactaaactacacccgcatattttaaagt	Protospacer
********************************************** *. .* .* 

5. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.875

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccactaaactacacccgcatattttaaagt	Protospacer
********************************************** *. .* .* 

6. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 7, identity: 0.875

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccactaaactacacccgcattttagttatg	Protospacer
**********************************************.*..  *. *

7. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 7, identity: 0.875

catcagcttggaaggctgaggttttaccactaaactacacccgcat-ctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccactaaactacacccgcataataatatat-	Protospacer
**********************************************  * ..**.  

8. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.875

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccactaaactacacccgcatattttaaagt	Protospacer
********************************************** *. .* .* 

9. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.857

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagt	Protospacer
**********************************************  .  * .* 

10. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NC_004604 (Bacillus megaterium QM B1551 plasmid pBM400, complete sequence) position: , mismatch: 9, identity: 0.839

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccattaaactacacccgcatgttttcttaa	Protospacer
*****************************.**************** *. . * ..

11. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.804

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccattaaactacacccgctttatttttaaa	Protospacer
*****************************.************** *. . . *...

12. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NZ_CP041068 (Bacillus megaterium strain KNU-01 plasmid pKNU_01_4, complete sequence) position: , mismatch: 11, identity: 0.804

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccattaaactacacccgcttatttttaaaa	Protospacer
*****************************.************** * *. .  ...

13. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NZ_CP032535 (Bacillus megaterium NCT-2 plasmid pNCT2_7, complete sequence) position: , mismatch: 11, identity: 0.804

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccattaaactacacccgcttatttttaaaa	Protospacer
*****************************.************** * *. .  ...

14. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to CP041516 (Bacillus aryabhattai strain KNU10 plasmid unnamed, complete sequence) position: , mismatch: 11, identity: 0.804

catcagcttggaaggctgaggttttaccactaaactacacccgcatctcgcatggg	CRISPR spacer
catcagcttggaaggctgaggttttaccattaaactacacccgcttatttttaaaa	Protospacer
*****************************.************** * *. .  ...

15. spacer 1.1|3539274|56|CP035232|CRISPRCasFinder matches to NC_048753 (Lactobacillus phage 3-521, complete genome) position: , mismatch: 11, identity: 0.804

catcagcttggaaggctgaggttttaccactaaactacacccgcat------ctcgcatg	CRISPR spacer
ctacagcttggaaggctgtggttttaccactaaactatacccgcgtgaactactcg----	Protospacer
*  *************** ******************.******.*      ****    

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 354020 : 360425 7 Caulobacter_phage(50.0%) NA NA
DBSCAN-SWA_2 655596 : 749802 100 Bacillus_phage(53.19%) protease,holin,integrase,transposase,head,portal,tail,capsid,plate,terminase,tRNA attL 655589:655622|attR 749777:749810
DBSCAN-SWA_3 792714 : 802639 9 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 1321252 : 1353654 36 Planktothrix_phage(40.0%) coat,tRNA NA
DBSCAN-SWA_5 1367268 : 1433250 90 Bacillus_phage(50.0%) holin,integrase,portal,tail,capsid,plate attL 1360376:1360390|attR 1410601:1410613
DBSCAN-SWA_6 1458061 : 1468878 13 uncultured_Caudovirales_phage(55.56%) portal,holin NA
DBSCAN-SWA_7 1522152 : 1575632 51 Bacillus_phage(45.45%) protease,transposase NA
DBSCAN-SWA_8 1877239 : 1938597 49 Bacillus_phage(66.67%) protease,holin,tail,tRNA NA
DBSCAN-SWA_9 1945126 : 1981716 40 Bacillus_phage(73.33%) integrase attL 1943470:1943484|attR 1949325:1949339
DBSCAN-SWA_10 1997642 : 2009503 21 Bacillus_phage(76.92%) integrase attL 1990620:1990635|attR 2001462:2001477
DBSCAN-SWA_11 2013723 : 2023548 9 Bacillus_phage(100.0%) NA NA
DBSCAN-SWA_12 2031682 : 2049088 25 Bacillus_phage(82.35%) tRNA NA
DBSCAN-SWA_13 2650586 : 2662845 15 Staphylococcus_phage(50.0%) transposase NA
DBSCAN-SWA_14 3184470 : 3270111 95 uncultured_Caudovirales_phage(35.0%) protease,holin,head,coat,portal,tail,capsid,tRNA,terminase NA
DBSCAN-SWA_15 3397512 : 3410930 13 Bacillus_phage(81.82%) holin,tail,transposase NA
DBSCAN-SWA_16 3691137 : 3778741 99 Bacillus_phage(60.0%) protease,holin,head,coat,integrase,portal,tail,capsid,plate,transposase,terminase attL 3726978:3726994|attR 3778295:3778311
DBSCAN-SWA_17 3910743 : 3960847 63 Bacillus_phage(38.46%) protease,holin,head,integrase,transposase,portal,tail,capsid,terminase attL 3908675:3908694|attR 3945668:3945687
DBSCAN-SWA_18 3980221 : 4052449 71 Bacillus_phage(28.12%) holin,integrase,portal,tail,capsid,plate,transposase attL 3999147:3999162|attR 4057031:4057046
DBSCAN-SWA_19 4057452 : 4089801 45 Bacillus_phage(42.86%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage