CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP035270	Weissella cibaria strain SRCM103448 plasmid unnamed3, complete sequence	0 crisprs	NA	0	0
CP035269	Weissella cibaria strain SRCM103448 plasmid unnamed2, complete sequence	0 crisprs	csa3	0	0
CP035267	Weissella cibaria strain SRCM103448 chromosome, complete genome	1 crisprs	csa3,DEDDh,cas14j,DinG,csn2,cas2,cas1,cas9,cas3	6	4
CP035268	Weissella cibaria strain SRCM103448 plasmid unnamed1, complete sequence	0 crisprs	NA	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP035267_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035267_2

1370251-1370682

TypeII

Consensus_repeat	Method
GTTTGAGAAGCATTCTATTCAACGTGACACTAAAAC	CRISPRCasFinder
GTTTGAGAAGCATTCTATTCAAC	CRT
GTTTGAGAAGCATTCTATTCAACGTGACACTAAAAC	PILER-CR

6 spacers

csn2,cas2,cas1,cas9

The CRISPR arrays of CP035267_2

>merge|CP035267|2|1370251-1370682|CRISPRCasFinder,CRT,PILER-CR
ATTTGGAAAGTATTCTATTCAACATGACACTAAAACGTTGATCATTGCAATTGCCAACGCCGTCTTGTTTGAGAAGCATTCTATTCAACATGACACTAAAACATTGAAACGCCAGAAGGCTCACTTATTCATGTTTGAGAAGCATTCTATTCAACATGACACTAAAACACAGTCTGGCGTTACTACAATTCATATGACGTTTGAGAAGCATTCTATTCAACGTGACACTAAAACATGCCATTAAACATGCCCTTCAAAAACTCGGTTTGAGAAGCATTCTATTCAACGTGACACTAAAACAACTGGGGGTTGCCCCAGGTACATATCGAAGTTTGAGAAGCATTCTATTCAACGTGACACTAAAACTGGCTTAGCGCCAATCGGCCACACAGTGACGTTTGAGAAGCATTCTATTGAACGTGACACTAAAAC

>CP035267|2|2|1370251-1370682|CRISPRCasFinder
ATTTGGAAAGTATTCTATTCAACATGACACTAAAAC	GTTGATCATTGCAATTGCCAACGCCGTCTT
GTTTGAGAAGCATTCTATTCAACATGACACTAAAAC	ATTGAAACGCCAGAAGGCTCACTTATTCAT
GTTTGAGAAGCATTCTATTCAACATGACACTAAAAC	ACAGTCTGGCGTTACTACAATTCATATGAC
GTTTGAGAAGCATTCTATTCAACGTGACACTAAAAC	ATGCCATTAAACATGCCCTTCAAAAACTCG
GTTTGAGAAGCATTCTATTCAACGTGACACTAAAAC	AACTGGGGGTTGCCCCAGGTACATATCGAA
GTTTGAGAAGCATTCTATTCAACGTGACACTAAAAC	TGGCTTAGCGCCAATCGGCCACACAGTGAC
GTTTGAGAAGCATTCTATTGAACGTGACACTAAAAC

>CP035267|2|1|1370251-1370669|CRT
ATTTGGAAAGTATTCTATTCAAC	ATGACACTAAAACGTTGATCATTGCAATTGCCAACGCCGTCTT
GTTTGAGAAGCATTCTATTCAAC	ATGACACTAAAACATTGAAACGCCAGAAGGCTCACTTATTCAT
GTTTGAGAAGCATTCTATTCAAC	ATGACACTAAAACACAGTCTGGCGTTACTACAATTCATATGAC
GTTTGAGAAGCATTCTATTCAAC	GTGACACTAAAACATGCCATTAAACATGCCCTTCAAAAACTCG
GTTTGAGAAGCATTCTATTCAAC	GTGACACTAAAACAACTGGGGGTTGCCCCAGGTACATATCGAA
GTTTGAGAAGCATTCTATTCAAC	GTGACACTAAAACTGGCTTAGCGCCAATCGGCCACACAGTGAC
GTTTGAGAAGCATTCTATTGAAC

>CP035267|2|1|1370252-1370682|PILER-CR
TTTGGAAAGTATTCTATTCAACATGACACTAAAACG	TTGATCATTGCAATTGCCAACGCCGTCTTG
TTTGAGAAGCATTCTATTCAACATGACACTAAAACA	TTGAAACGCCAGAAGGCTCACTTATTCATG
TTTGAGAAGCATTCTATTCAACATGACACTAAAACA	CAGTCTGGCGTTACTACAATTCATATGACG
TTTGAGAAGCATTCTATTCAACGTGACACTAAAACA	TGCCATTAAACATGCCCTTCAAAAACTCGG
TTTGAGAAGCATTCTATTCAACGTGACACTAAAACA	ACTGGGGGTTGCCCCAGGTACATATCGAAG
TTTGAGAAGCATTCTATTCAACGTGACACTAAAACT	GGCTTAGCGCCAATCGGCCACACAGTGACG
TTTGAGAAGCATTCTATTGAACGTGACACTAAAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP035267.1\|QAT25625.1\|1368527_1369130_-\|GTP-pyrophosphokinase-family-protein	unknown	unknown	gnl\|CDD\|225232
CP035267.1\|QAT25633.1\|1378708_1379554_-\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
CP035267.1\|QAT25619.1\|1362165_1363158_-\|glyoxalase	unknown	unknown	gnl\|CDD\|319934
CP035267.1\|QAT25620.1\|1363350_1364064_+\|TIGR00266-family-protein	unknown	unknown	gnl\|CDD\|224924
CP035267.1\|QAT25630.1\|1372910_1377377_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	cas9	mkCas0193_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|374653
CP035267.1\|QAT25618.1\|1359712_1361095_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223562
CP035267.1\|QAT25623.1\|1366773_1367685_-\|RluA-family-pseudouridine-synthase	unknown	unknown	gnl\|CDD\|223638
CP035267.1\|QAT25635.1\|1380397_1380709_-\|hypothetical-protein	unknown	unknown	unknown
CP035267.1\|QAT25636.1\|1380781_1382218_-\|hypothetical-protein	unknown	unknown	unknown
CP035267.1\|QAT25627.1\|1370830_1371508_-\|type-II-A-CRISPR-associated-protein-Csn2	csn2	cd09758_csn2_CAS-II-A	gnl\|CDD\|213408
CP035267.1\|QAT25622.1\|1365362_1366748_-\|magnesium-transporter	unknown	unknown	gnl\|CDD\|225148
CP035267.1\|QAT25629.1\|1371826_1372699_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|187851
CP035267.1\|QAT25624.1\|1367684_1368500_-\|NAD-kinase	unknown	unknown	gnl\|CDD\|235317
CP035267.1\|QAT25634.1\|1379713_1380334_-\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|372595
CP035267.1\|QAT25632.1\|1378093_1378690_-\|XTP/dITP-diphosphatase	unknown	unknown	gnl\|CDD\|234648
CP035267.1\|QAT25631.1\|1377571_1378090_-\|YfcE-family-phosphodiesterase	unknown	unknown	gnl\|CDD\|223695
CP035267.1\|QAT25626.1\|1369417_1370029_+\|dithiol-disulfide-isomerase	unknown	unknown	gnl\|CDD\|372699
CP035267.1\|QAT25621.1\|1364102_1365278_-\|Bcr/CflA-family-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|340878
CP035267.1\|QAT25617.1\|1359297_1359573_-\|DUF2089-family-protein	unknown	unknown	gnl\|CDD\|378280
CP035267.1\|QAT25628.1\|1371494_1371830_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043

Protein	Function_ID	Function_description	E-value
CP035267.1\|QAT25625.1\|1368527_1369130_-\|GTP-pyrophosphokinase-family-protein	gnl\|CDD\|225232	COG2357, COG2357, PpGpp synthetase catalytic domain [General function prediction only].	1.4962e-68
CP035267.1\|QAT25633.1\|1378708_1379554_-\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	5.46899e-108
CP035267.1\|QAT25619.1\|1362165_1363158_-\|glyoxalase	gnl\|CDD\|319934	cd08346, PcpA_N_like, N-terminal domain of Sphingobium chlorophenolicum 2,6-dichloro-p-hydroquinone 1,2-dioxygenase (PcpA), and similar proteins. The N-terminal domain of Sphingobium chlorophenolicum (formerly Sphingomonas chlorophenolica) 2,6-dichloro-p-hydroquinone1,2-dioxygenase (PcpA), and similar proteins. PcpA is a key enzyme in the pentachlorophenol (PCP) degradation pathway, catalyzing the conversion of 2,6-dichloro-p-hydroquinone to 2-chloromaleylacetate. This domain belongs to a conserved domain superfamily that is found in a variety of structurally related metalloproteins, including the bleomycin resistance protein, glyoxalase I, and type I ring-cleaving dioxygenases.	1.63898e-32
CP035267.1\|QAT25620.1\|1363350_1364064_+\|TIGR00266-family-protein	gnl\|CDD\|224924	COG2013, COG2013, Uncharacterized conserved protein [Function unknown].	1.09952e-60
CP035267.1\|QAT25630.1\|1372910_1377377_-\|type-II-CRISPR-RNA-guided-endonuclease-Cas9	gnl\|CDD\|374653	pfam16592, Cas9_REC, REC lobe of CRISPR-associated endonuclease Cas9. The REC lobe of Cas9 - the CRISPR-associated endonuclease Cas9 - includes the REC1 and REC2 domains. REC1 forms an elongated, alpha-helical structure consisting of 25 alpha helices and two beta-sheets, whereas REC2 inserted within REC1 adopts a six-helix bundle structure. The REC lobe and the NUC lobe of Cas9 fold to present a positively charged groove at their interface which accommodates the negatively charged sgRNA:target DNA heteroduplex. CRISPR (clustered regularly interspaced short palindromic repeat)-Cas system occurs naturally in bacteria as a defense against invasion by phages or other mobile genetic elements. Cas9 is targeted to specific genomic locations by sgRNAs or single guide RNAs, in order to complex with invading DNA in order to cleave it and render it inactive.	4.17189e-113
CP035267.1\|QAT25618.1\|1359712_1361095_-\|ABC-F-family-ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	1.40489e-89
CP035267.1\|QAT25623.1\|1366773_1367685_-\|RluA-family-pseudouridine-synthase	gnl\|CDD\|223638	COG0564, RluA, Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis].	1.26791e-86
CP035267.1\|QAT25627.1\|1370830_1371508_-\|type-II-A-CRISPR-associated-protein-Csn2	gnl\|CDD\|213408	cd09758, Csn2, CRISPR/Cas system-associated protein Csn2. Csn2 is a Nmeni subtype-specific Cas protein, which may function in the adaptation process which mediates the incorporation of foreign nucleic acids into the microbial host genome. Csn 2 may interact directly with double-stranded DNA. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA. Csn2 has been predicted to be a functional analog of Cas4 based on anti-correlated phyletic patterns; also known as SPy1049 family.	5.11855e-70
CP035267.1\|QAT25622.1\|1365362_1366748_-\|magnesium-transporter	gnl\|CDD\|225148	COG2239, MgtE, Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism].	3.05705e-127
CP035267.1\|QAT25629.1\|1371826_1372699_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|187851	cd09720, Cas1_II, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer intergration. Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	1.75584e-108
CP035267.1\|QAT25624.1\|1367684_1368500_-\|NAD-kinase	gnl\|CDD\|235317	PRK04885, ppnK, inorganic polyphosphate/ATP-NAD kinase; Provisional.	5.53057e-153
CP035267.1\|QAT25634.1\|1379713_1380334_-\|HAD-family-hydrolase	gnl\|CDD\|372595	pfam13419, HAD_2, Haloacid dehalogenase-like hydrolase.	6.54099e-49
CP035267.1\|QAT25632.1\|1378093_1378690_-\|XTP/dITP-diphosphatase	gnl\|CDD\|234648	PRK00120, PRK00120, dITP/XTP pyrophosphatase; Reviewed.	1.09398e-95
CP035267.1\|QAT25631.1\|1377571_1378090_-\|YfcE-family-phosphodiesterase	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	1.91713e-31
CP035267.1\|QAT25626.1\|1369417_1370029_+\|dithiol-disulfide-isomerase	gnl\|CDD\|372699	pfam13743, Thioredoxin_5, Thioredoxin.	1.10366e-32
CP035267.1\|QAT25621.1\|1364102_1365278_-\|Bcr/CflA-family-efflux-MFS-transporter	gnl\|CDD\|340878	cd17320, MFS_MdfA_MDR_like, Multidrug transporter MdfA and similar multidrug resistance (MDR) transporters of the Major Facilitator Superfamily. This family is composed of bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as MdfA (also called chloramphenicol resistance pump Cmr), EmrD, MdtM, MdtL, bicyclomycin resistance protein (also called sulfonamide resistance protein), and the uncharacterized inner membrane transport protein YdhC. EmrD is a proton-dependent secondary transporter, first identified as an efflux pump for uncouplers of oxidative phosphorylation. It expels a range of drug molecules and amphipathic compounds across the inner membrane of E. coli. Similarly, MdfA is a secondary multidrug transporter that exports a broad spectrum of structurally and electrically dissimilar toxic compounds. These MDR transporters are drug/H+ antiporters (DHA) belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	7.04255e-85
CP035267.1\|QAT25617.1\|1359297_1359573_-\|DUF2089-family-protein	gnl\|CDD\|378280	pfam09862, DUF2089, Protein of unknown function (DUF2089). This domain, found in various hypothetical prokaryotic proteins, has no known function. This domain is a zinc-ribbon.	5.20798e-14
CP035267.1\|QAT25628.1\|1371494_1371830_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	1.45641e-38

>CP035267.1|QAT25626.1|1369417_1370029_+|dithiol-disulfide-isomerase
MLEVYHFVNPLSGDSLETEKKLASYVTTATEKIALQVVPVMTMQSVHETAVALGHPEQEQVLSQTMYRFILDVKALQFQGKKVARRFLEAAQTAIFSGQPYTDEFVMGLVADIAADSTLFLEDRNSGLTIQAYRADHNMAAEMGVTQFPTLVVYNTNGANHASRTTDFSDESLRSLITPSASQQLNTYDGYLHNGHVTEIEEG
>CP035267.1|QAT25625.1|1368527_1369130_-|GTP-pyrophosphokinase-family-protein
MTHNEWDKLLQPYVQAVDELKVKLRGMRTEFELAGIKTPVEFVTGRVKAIPAIEEKLVRRHIDMERLEQDMEDLAGVRIMTQFTEDIFKIVDLLRQRKDMVILEERDYVSNAKPSGYRSYHIVIEYPVQLITGEKKILAEIQVRTMQMNVWATIEHAINYKYDGDYTPEMTEKLREVAELSIRVDELFSELHNGLDKPTD
>CP035267.1|QAT25624.1|1367684_1368500_-|NAD-kinase
MKLAIYSNNGAQSKAVVALFKEKLAARNTDKIVFDDEHPDVVISVGGDGTLLGAFHHYADQLAFVRFIGVHTGHLGFYADWQHFEIDELIDSLVNDEDARTVKYPLLEAHVRYTDGREERVLALNEAAIKRPLGTLVADVYIQGELFERFRGDGLTASTPTGSTAYNKAIGGAVMHPSLDAIQLAEIASINSRVFRTLGSPLIIGNHEVIRVQLENDGAAVTLSFDHLSKIASNIDWIEFRVSKTKIQFAEYRHMHFWHRVQSSFIGTEVK
>CP035267.1|QAT25623.1|1366773_1367685_-|RluA-family-pseudouridine-synthase
MAQFSWINQGDETLKIKTFLAQRGVSHRMFSIVKRGGGAVLLAGKQVRTVDEVKPGDKVTIVMPPEESNDVVAMSDLPITVLYEDENWLVVEKEAGVTSVPGKADRETTMVNRVKGYLARSGAEDLVPHVVTRLDRFTSGVALLAKHRFAHGLLDKQLQTHSVDKRYYAIVDGDLPDDYGFIDAPIGRMDDDFIRREVREDGRPSQTEYWVVKRFGNQTLVRVQLHTGRTHQIRVHFKYLGHPLIGDEIYGGPMDRGITRQALHAYWLRFYDPFAQVERTTQSALPQDIVAVLDGYQVEPDEN
>CP035267.1|QAT25622.1|1365362_1366748_-|magnesium-transporter
MNDMLDEITDEMRDELSEQAHHLVNYLEHGEKEAFLDGFDELHGYDKAVFYVTLPSQLRHQIIEWLTPTELAEVFDEIEPEDVDINDLLEEMSPRYAAQMLNQMYTDNSVDLFEDMDQRELGMYLALMPKEDAAQIRRLLNYEDDTAGSLMGTEFVAINQKLTIGQAMTAVKKAAQEAEQITYIYVVDDDEKLVGVISLRSLIVWPDEAKVADVMDTNLITVTPSDDQEDVARLMADYNFVSIPVVVKDHLVGTITVDDIVDVIDEEAAEDYSRLAGVDVVTLEENPFKSAAKRLPWLVGLIFLGMGTASVINNFEGLVSQASILAVFISLITGTAGNAGTQSLAVSVRRLALKETSSLIKMLMTEVLIGAMIGATAGLTIFLVVWIWKANMLLGVAVGLAMGVAILVANVAGSFIPLVMDKIGVDPAVASGPFISTLSDLTSVIIYFNIAGLFISHFVSA
>CP035267.1|QAT25621.1|1364102_1365278_-|Bcr/CflA-family-efflux-MFS-transporter
MKKKIGIFQLFLLGVLSAFSPLAMDLYLPGLPELQQDLHTSTSLAQLTITASLLGLALGQVIIGPLSDRIGRRTPLLWGTVLFGLSSATIVFAPNIWVLIILRLIQGLAGSTGIVLSLAVITDLFTGKTLTKQIAINQTINGVFPVLAPVFGGVIIAIADWQMTFWVLAVLGLILFVSVLLALPETLPAEKAQVADRPSVVGGFAQLFKQREFVLYALTQAFMTAALFAYISGSSFVLQKIFGMSVTTFGIVYAINGAGIALMSSLAGRWAVKFGEYRALRWFIRAGFLGGILLLVTAFLPKSLWLILPPLFLVVATVGGIISLTTALGMQGQQQNAGSASALLGLARYALGGLMSPIVGLFGQHTYMPMAILIVGVQLVGFIIFSQVKKQ
>CP035267.1|QAT25620.1|1363350_1364064_+|TIGR00266-family-protein
MDYNIEANMQFPLVTYNLLPNETVRIQSGAMVYHTGDTQLKGRLNANGGSGIGKLLRAAGRAMVSGESVFITEVSAGAKGGDLALAPAVLGTIQALEVTPGRNYYLNDSAFLAMDGTVQYSMERQSVGRAILGGQGGLFVMKTSGEGTLLVAAFGSIKEIDLQDAHDFTIDNAHVVAWETSLTYDIHLEGGGLIGSIGTGEGVVNTFNGTGKVLVQSLNLENFANMLKPFMPQPSSN
>CP035267.1|QAT25619.1|1362165_1363158_-|glyoxalase
MQTHHISLLTGDAKLNADYYVGVLGMRFIKNSVNQANPRNRHVYYGDFMGTPGTVITFFPIDDLRDRTDGKMFFSGIHYSIPEGSTQYWLDRFAEKGLKAEVDAMGRIRTADFEDLPIRMQETEGKNFDWHINYMSDVPAEFQITGVIGAELHVPDVAATGRFFEELLEIPVKGNIIDLDGVEAIELVQTAEDAPNSRFGKGSTDHYALGVESEEDLKYYWERAKALGFKREVFIDRGYFRSAYFIEPGGNRIELATTNPGFTLDESLFDLGTTFALPPRFEASRQELLDHYAKKGVFFDEVKPYTGTGHLENGGKIRAIHDENGNTRND
>CP035267.1|QAT25618.1|1359712_1361095_-|ABC-F-family-ATP-binding-cassette-domain-containing-protein
MLQGQIQNLTKQINGDTLFEIDHITIPQTGIVAIVGENGAGKTTLLNILRGVDTDYSGTVTLPGFMAFVPQINTVDGESGGEMTRRLISEALVSRPDVLILDEPTSHLDTAHQAWLIKSLRHFKGLVILVTHNRAFLREVAMTVWSFENGTVTAFNGNFEGYLAEVAAKRGAQMQAYKAYVSEKSRLSQRAREAGERSARTKKINPHKHSRAEVESIKSNSNGIEKGFAQQRKAFNSRLNRLNKVEKPLSETKLTLQNPVMVRPGKPVITALDVTVSQGERELIQHVTLKVETGHRLAIMGKNGSGKTTLINRLLQGGLGITHADNLRISYANQDLRQLDASKTALANIMQTTDESEQIARNFLGAMGIRLEQVNELVGDMSGGERVRVALVKALLQASDLLILDEPTNYLDIPALEALTAYLQTTKQAVVFVSHDAQFVRDVATEVFEISEGSLFKHTN
>CP035267.1|QAT25617.1|1359297_1359573_-|DUF2089-family-protein
MEWFLELSTEDQEFVKQLVLSSGSLKQLAKIYDVSYPTVRTRLNMVIQTINLIDSKQANSFEGRIMKMVIAEKISLDVAKEIISDYQEANK
>CP035267.1|QAT25627.1|1370830_1371508_-|type-II-A-CRISPR-associated-protein-Csn2
MRMFSLNFDFLDEPIKLEGFTELVIENRTVFTKVVQALYEYSDDENYIQIFNEDYQVLKTNELMLVNDVLGFDINSPTTIKLVYQDIIRQINDKPEVKSKIESYLNQAIQIIKDELVEFEIDLVSDEILLTEALKSLGVKIEILSDTIFERFFEIIQVFKYLKAKELLVVINAGVYFSKSEIAAIAEYTELQNMNMLMINSAKYEGVKSRYVLDEDFVIMHEHMV
>CP035267.1|QAT25628.1|1371494_1371830_-|CRISPR-associated-endonuclease-Cas2
MSYRFMRMILMFDMPMQSPEDKRTYRQFRKYLLSEGFLMHQFSIYSKLLLNDTANKAMLRRLEKNNPKVGNISLLTVTEKQFARMIYLNGEKSDSVANTDDRIVILGDEDV
>CP035267.1|QAT25629.1|1371826_1372699_-|type-II-CRISPR-associated-endonuclease-Cas1
MGFRTLIINVHSKLSYKNNHLVFKTAEQTEMIHLSEIDTLLCETTDIVITTMLLDRLVNEGVLVIFCDSKRLPSSMLMPYYVRHDSSLQVRRQTEWTPAIKSVVSTKIIAQKLANQASVLGGVDLIDKQVAVEKVAADLILDDPANIEGHVARTYFNALFGNDFVRDEPTEINKALDYGYALIMGLFAREVAKCGCITQIGIKHANQFNQFNLASDLMEPFRVLIDQIVYENRRETFPRIKRQLFNLFSNTYVYDDKEMYLNNIVSDYVRKIIDCLHEEREDIPEFKVNG
>CP035267.1|QAT25630.1|1372910_1377377_-|type-II-CRISPR-RNA-guided-endonuclease-Cas9
MAKQKYTVGLDIGTNSVGWAVINQDFKLVSGKKHINDNGKQKRSRTNLWGVRLFDAAETAADRRLKRGMRRRIARRKERLNYLRGIFQADILAFDDSFFIRMDESFLQDDDKQATAFSYRDQSGAMQTRVVTEKEAVKYPLFNGKSGSGETYTDESAYYNQYPTIYHLRQRLIDNPAQADLRLVYLAMHHILKYRGHFVNQGQTFDLGNINIAGNLTSALYKLDEASSFKFGLADVDADQANAILKNKQWSASKKAYELNALFEIIQDTVYRRENETQAVTYDSLTVKQQEKWLAEKQKQVKAFLTGIVGNTISPKDIFANKDYDKKQNEDFPEKIKYSNENFEEQIGELEKYLDETEVAAIVAGKDVYESLVLSNILTKSTLSGSMIEKYNVHGTQLKNLKSFSRKVSAEFYNKLFNVVKDEKGKPQIGVYAQYIDGVGNPAKRLAREDFYDALKKVFESEFKGLTFPAGEKGIDFTKTDLSADRVAFIREMNEAINLENYLPKQRQADNGAIPYQVHEHELIRIIENQKQYYPFLGDKVQVTYEDESGQTQVRSEYKIQVLFKFRIPYYVGTLAKNSGWVNEDGKKLVARNVAAKNSWVVRNSDERVTPWNFEQVINKEASSINFIERMTNFDTYLPNEKVLPKNSLLYQEFIVNNELISSGYYLNGRKEYFLPEQRQRIITRLFKRYRKVSAKQMLDFLKSEYQIKLDDDPKKLFGLDTFVKVPSYNGSLSTVVDLTKKMGISEDLIANYPERFEEIIKWQTIFEDKKILKKTIREVNHNKWSGMLTAEQVNKLSKRHYTGWGRLSQKLLDGVKTSQGRTIIESLREGICDNFMRLIEDEKIAEFIANAQVAGAKDGVLAYDLVDQLPGSPAIKKGIWQSLRVLQELEHYLGRDAIGKVVIEMSRDDESSRRTKARKQQLEEFYKKFKESTGSDVTAELKRELSEKDAKEIDDEKVFLYFLQNGKSMYSGDQLYLSRLADYQVDHIVPQTYIKDDSLDNKVLVTQRDNQNKGGDTPSHTVVTRMNSYWDMLAKNGQVSPRKLANLKKGTITLKQREGFINRQLVENRQIIKHVANILTNYYTGTDTLVLTPKSGLTSQLRSGLIYELNPAFDEAKALDRGKAYQVERYTTIKLHDRFVKNRKLNDYHHAHDAYLNAFVAQYVYQDHPEWKNAWVYGKYPRNGQADFGKWATQRKQKSLQLLSSMANDVWNLEDPDTMEKTILNRDETFEQMRQTLRYRNINIVKKLETQTGKFGDESVYKKGNKADHYSLGLKRKYPPQKYGGTKGAISAVTALVKDTSGRVIPVSISASDYDSYQNASDKLAWLLMRKKNIAEILVASLPKYTKYELPSGALRLLASYQEAQSAVELPMLNLGLMDDEAKVLNLYDQLAQFIADNKLFTDKKIALLKGEMRVAFEELEEFKDKQKVIDELLGVTNGSNQGLQALNSIGLGTSNQRLKSGNTLSNGVTLINESVTGLYSTRTTYN
>CP035267.1|QAT25631.1|1377571_1378090_-|YfcE-family-phosphodiesterase
MDYLIISDAHGDRQILVDVVDHYRGKVKAMFYNGDSELSRSDELFNDLMPVIGNMDTDPMFPDDRDYADDNFTLYQTHGHLVHTEVSLNQLREVASAKGVDVVTSGHTHVLGAEEIDGRLFINPGSIALPKGQYAYLGGTYAILTVEPTQFIVQFYTRDMQPVDGLRFTFKR
>CP035267.1|QAT25632.1|1378093_1378690_-|XTP/dITP-diphosphatase
MAKLIFASKNEGKVREFREFLTPLGVEVVSLNELENVPTIIEDGNTFQENATIKAETIAKAFNVPVVAEDAGLTVDALDGAPGVHSARYAGDHDDAANNAKLLRELADVADADRTASFHAVIVAIKPDGKRLVASGKVDGRILRAAQGSDGFGYDPLFFYEPFGKSFGELTPAEKNEISHRGAALQQFMSDFNAWWED
>CP035267.1|QAT25633.1|1378708_1379554_-|glutamate-racemase
MDNRAIGYIDSGIGGLTVVKQALKQIPDEQVYYVGDTARMPYGPRPQEEVLGFTWQMVRYLLKKDIKMLVVACNTATAAALPDLQAKLDIPVVGVIQPGVDAALRKSADGEIGVIATAGTVKSLAYYNGLLQGNRAANVVQLAAPEFVDVAENHDYTSEFARQVVKEKLSYFKNHQVDTLILGCTHFPLMENFIQEAMGPQVTLVNSGAETISTVVEFLDKFDLRRASANPADHNDDEYFTTGSVKRFATIGGRWLDDKEMTVKHLDIIDDTLVLNEHVTD
>CP035267.1|QAT25634.1|1379713_1380334_-|HAD-family-hydrolase
MKSFIFDVDGTLLSTESMYMKSLQQTLEENGIHKAYEELYAIFGLPSLDALIKFGIENPEEMQRQWQDHYHDFWDEVQLFAGVTDMLADLKATGVQLGIVTSNTPEEFADHADAFGINGYFDDFVFAGQTPKMKPAADPILKSMADLKATPETSIYIGDSVHDMHAAHNAGIKFGMAAWGVRDRAVFNDEAEFIFETPADILKLVD
>CP035267.1|QAT25635.1|1380397_1380709_-|hypothetical-protein
MTKILFILIFIGDVLATPLFDSHPIFLIGTAVLAAATLYALYDMQSNRVNYAMTAVLLLLAVSLFVLHGESDYLTVLNRVMMAQVAVSAILAVTYAGVRSQTA
>CP035267.1|QAT25636.1|1380781_1382218_-|hypothetical-protein
MNEPQQPFDDDQFIPVEYTELIRQSYAEQGGYSMPAIDKTALMVNRALAVSVSDDLVKEYHDDNTVDDNFVRIFVRQTIDYGYILTDEAPREWTADNLFQAMGMTLGYLEVAPEFAGMLINLLESITKNLVARGLMPADFFTPDVRAWLMETVPQYLEDLDESMDEPMDETEIEVMERLMDDLGLEISPEDLMETNVDLAQDTSVDDDDLRVKFFFEVLNASGIPDLYQQHRSIKPAVKKHLAYLGTHQGLLVLTVMYASAMREWLETQIEMGDWSHTDFVVRDFFDDVNGMFLQDVITIENDAEVIHYTAELKALISGVLAQEPEPMAYVAEQVSSELPAAENLQRGFITALRDRDQLTGEGLEVAESILKIVLDTIAVKTDADIATLPVEAATQVLIEKFHTFDLFGLDGFEFVDDVIIEFVRWLAERGLVSNAVVDRWGNAIEAAQLPRYMYALVADVQDYLHLNEVGQTVSPIY

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035267_2	2.1\|1370287\|30\|CP035267\|CRISPRCasFinder	1370287-1370316	30	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	2133308-2133337	6	0.8
CP035267_2	2.13\|1370288\|30\|CP035267\|PILER-CR	1370288-1370317	30	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	2133308-2133337	6	0.8
CP035267_2	2.1\|1370287\|30\|CP035267\|CRISPRCasFinder	1370287-1370316	30	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1410076-1410105	7	0.767
CP035267_2	2.4\|1370485\|30\|CP035267\|CRISPRCasFinder	1370485-1370514	30	NZ_CP018938	Bacteroides fragilis strain Q1F2 plasmid Q1F2-p1, complete sequence	14069-14098	7	0.767
CP035267_2	2.13\|1370288\|30\|CP035267\|PILER-CR	1370288-1370317	30	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	1410076-1410105	7	0.767
CP035267_2	2.16\|1370486\|30\|CP035267\|PILER-CR	1370486-1370515	30	NZ_CP018938	Bacteroides fragilis strain Q1F2 plasmid Q1F2-p1, complete sequence	14069-14098	7	0.767
CP035267_2	2.1\|1370287\|30\|CP035267\|CRISPRCasFinder	1370287-1370316	30	NZ_CP013412	Burkholderia thailandensis strain 2002721643 plasmid p2002721643, complete sequence	77451-77480	8	0.733
CP035267_2	2.1\|1370287\|30\|CP035267\|CRISPRCasFinder	1370287-1370316	30	NZ_CP010016	Burkholderia thailandensis 34 plasmid unnamed, complete sequence	294961-294990	8	0.733
CP035267_2	2.6\|1370617\|30\|CP035267\|CRISPRCasFinder	1370617-1370646	30	NZ_CP049906	Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence	593575-593604	8	0.733
CP035267_2	2.13\|1370288\|30\|CP035267\|PILER-CR	1370288-1370317	30	NZ_CP013412	Burkholderia thailandensis strain 2002721643 plasmid p2002721643, complete sequence	77451-77480	8	0.733
CP035267_2	2.13\|1370288\|30\|CP035267\|PILER-CR	1370288-1370317	30	NZ_CP010016	Burkholderia thailandensis 34 plasmid unnamed, complete sequence	294961-294990	8	0.733
CP035267_2	2.18\|1370618\|30\|CP035267\|PILER-CR	1370618-1370647	30	NZ_CP049906	Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence	593575-593604	8	0.733

1. spacer 2.1|1370287|30|CP035267|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 6, identity: 0.8

gttgatcattgcaattgccaacgccgtctt	CRISPR spacer
cataatcattgcaattgcctgcgccgtcgt	Protospacer
  *.*************** .******* *

2. spacer 2.13|1370288|30|CP035267|PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 6, identity: 0.8

gttgatcattgcaattgccaacgccgtctt	CRISPR spacer
cataatcattgcaattgcctgcgccgtcgt	Protospacer
  *.*************** .******* *

3. spacer 2.1|1370287|30|CP035267|CRISPRCasFinder matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 7, identity: 0.767

gttgatcattgcaattgccaacgccgtctt	CRISPR spacer
gatcttcagtgcatttgccaacgccgtcgg	Protospacer
* *  *** **** **************

4. spacer 2.4|1370485|30|CP035267|CRISPRCasFinder matches to NZ_CP018938 (Bacteroides fragilis strain Q1F2 plasmid Q1F2-p1, complete sequence) position: , mismatch: 7, identity: 0.767

atgccattaaacatgcccttcaaaaactcg	CRISPR spacer
tcgtaattaaacatgcccttcacaaacttc	Protospacer
 .*. ***************** *****.

5. spacer 2.13|1370288|30|CP035267|PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 7, identity: 0.767

gttgatcattgcaattgccaacgccgtctt	CRISPR spacer
gatcttcagtgcatttgccaacgccgtcgg	Protospacer
* *  *** **** **************

6. spacer 2.16|1370486|30|CP035267|PILER-CR matches to NZ_CP018938 (Bacteroides fragilis strain Q1F2 plasmid Q1F2-p1, complete sequence) position: , mismatch: 7, identity: 0.767

atgccattaaacatgcccttcaaaaactcg	CRISPR spacer
tcgtaattaaacatgcccttcacaaacttc	Protospacer
 .*. ***************** *****.

7. spacer 2.1|1370287|30|CP035267|CRISPRCasFinder matches to NZ_CP013412 (Burkholderia thailandensis strain 2002721643 plasmid p2002721643, complete sequence) position: , mismatch: 8, identity: 0.733

gttgatcattgcaattgccaacgccgtctt	CRISPR spacer
cgaagtcattgcaatcgccaacggcgtcat	Protospacer
   ..**********.******* **** *

8. spacer 2.1|1370287|30|CP035267|CRISPRCasFinder matches to NZ_CP010016 (Burkholderia thailandensis 34 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gttgatcattgcaattgccaacgccgtctt	CRISPR spacer
cgaagtcattgcaatcgccaacggcgtcat	Protospacer
   ..**********.******* **** *

9. spacer 2.6|1370617|30|CP035267|CRISPRCasFinder matches to NZ_CP049906 (Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tggcttagcgccaatcggccacacagtgac	CRISPR spacer
cgaagtagcgccaatcggccagaaagtgca	Protospacer
.*.  **************** * ****

10. spacer 2.13|1370288|30|CP035267|PILER-CR matches to NZ_CP013412 (Burkholderia thailandensis strain 2002721643 plasmid p2002721643, complete sequence) position: , mismatch: 8, identity: 0.733

gttgatcattgcaattgccaacgccgtctt	CRISPR spacer
cgaagtcattgcaatcgccaacggcgtcat	Protospacer
   ..**********.******* **** *

11. spacer 2.13|1370288|30|CP035267|PILER-CR matches to NZ_CP010016 (Burkholderia thailandensis 34 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.733

gttgatcattgcaattgccaacgccgtctt	CRISPR spacer
cgaagtcattgcaatcgccaacggcgtcat	Protospacer
   ..**********.******* **** *

12. spacer 2.18|1370618|30|CP035267|PILER-CR matches to NZ_CP049906 (Diaphorobacter sp. HDW4B plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.733

tggcttagcgccaatcggccacacagtgac	CRISPR spacer
cgaagtagcgccaatcggccagaaagtgca	Protospacer
.*.  **************** * ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

424899 : 477475

Staphylococcus_phage(25.0%)

protease,transposase,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT24805.1\|424899_425796_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-45	39.8
QAT24806.1\|425750_426257_-\|transposase	transposase	NA	NA	NA	NA
QAT24807.1\|426328_426748_-	hypothetical protein	NA	NA	NA	NA
QAT24808.1\|426740_427556_-	hypothetical protein	NA	NA	NA	NA
QAT24809.1\|427692_428595_+	NADP-dependent oxidoreductase	NA	NA	NA	NA
QAT24810.1\|428895_430518_+	peptide ABC transporter substrate-binding protein	NA	NA	NA	NA
QAT24811.1\|430529_431696_+	amidohydrolase family protein	NA	NA	NA	NA
QAT24812.1\|431771_433628_+	hypothetical protein	NA	NA	NA	NA
QAT24813.1\|433677_434277_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QAT24814.1\|434458_435853_+	DHA2 family efflux MFS transporter permease subunit	NA	NA	NA	NA
QAT24815.1\|436008_438501_+	ATP-binding cassette domain-containing protein	A0A1B1IVR3	uncultured_Mediterranean_phage	5.1e-120	30.1
QAT24816.1\|438591_439434_+	aldo/keto reductase	A0A1V0SDE7	Indivirus	1.7e-22	29.6
QAT24817.1\|439642_440491_+	DegV family protein	NA	NA	NA	NA
QAT24818.1\|440706_441468_+\|protease	matrixin family metalloprotease	NA	NA	NA	NA
QAT24819.1\|441523_441955_+	DUF1810 family protein	A0A2H4UVK5	Bodo_saltans_virus	2.6e-16	41.2
QAT24820.1\|442213_442810_+	thymidine kinase	A0A249XZX5	Enterococcus_phage	4.7e-40	48.1
QAT24821.1\|443067_443394_+	QacE family quaternary ammonium compound efflux SMR transporter	NA	NA	NA	NA
QAT24822.1\|443393_443717_+	multidrug efflux SMR transporter	NA	NA	NA	NA
QAT24823.1\|444179_445205_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	NA	NA	NA	NA
QAT24824.1\|445204_445792_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	7.0e-28	43.2
QAT24825.1\|445797_446991_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	2.9e-89	45.0
QAT24826.1\|447006_447471_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	3.6e-27	46.0
QAT24827.1\|447577_448384_+	hypothetical protein	NA	NA	NA	NA
QAT24828.1\|448435_448873_-	peptide-methionine (R)-S-oxide reductase	NA	NA	NA	NA
QAT24829.1\|449042_449951_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.9e-28	40.5
QAT24830.1\|449957_451481_+	ABC transporter permease/substrate-binding protein	NA	NA	NA	NA
QAT24831.1\|451533_452709_-	MFS transporter	NA	NA	NA	NA
QAT24832.1\|452932_454117_+	iron-containing alcohol dehydrogenase	NA	NA	NA	NA
QAT24833.1\|454230_454953_+	DUF554 domain-containing protein	NA	NA	NA	NA
QAT24834.1\|454979_455342_+	hypothetical protein	NA	NA	NA	NA
QAT24835.1\|455533_455938_+	hypothetical protein	NA	NA	NA	NA
QAT24836.1\|456265_456574_+	hypothetical protein	NA	NA	NA	NA
QAT24837.1\|456610_456823_+	hypothetical protein	NA	NA	NA	NA
QAT24838.1\|456937_457786_-	hypothetical protein	NA	NA	NA	NA
QAT24839.1\|457957_458383_+	GtrA family protein	NA	NA	NA	NA
QAT24840.1\|458379_459225_+	HAD family hydrolase	NA	NA	NA	NA
QAT24841.1\|459346_460135_+	isoprenyl transferase	R9W0U9	Flavobacterium_phage	5.0e-21	45.1
QAT24842.1\|460145_460937_+	phosphatidate cytidylyltransferase	NA	NA	NA	NA
QAT24843.1\|461029_462289_+\|protease	RIP metalloprotease RseP	NA	NA	NA	NA
QAT24844.1\|462455_464177_+\|tRNA	proline--tRNA ligase	NA	NA	NA	NA
QAT24845.1\|464699_469022_+	PolC-type DNA polymerase III	A0A0A7RWA3	Clostridium_phage	2.3e-19	34.4
QAT24846.1\|474817_475432_+	TrmH family RNA methyltransferase	NA	NA	NA	NA
QAT24847.1\|475575_476049_+	ASCH domain-containing protein	NA	NA	NA	NA
QAT24848.1\|476117_476624_+\|transposase	transposase	NA	NA	NA	NA
QAT24849.1\|476578_477475_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-45	39.8

DBSCAN-SWA_2

812537 : 828398

Bacillus_phage(40.0%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT25126.1\|812537_813434_+\|protease	zinc metalloprotease HtpX	NA	NA	NA	NA
QAT25127.1\|813506_814013_+\|transposase	transposase	NA	NA	NA	NA
QAT25128.1\|813967_814864_+\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-45	39.8
QAT25129.1\|814932_816468_-	hypothetical protein	NA	NA	NA	NA
QAT25130.1\|816856_817651_+\|transposase	IS3 family transposase	Q6J1X2	Lactobacillus_phage	4.7e-27	35.1
QAT26513.1\|818155_819523_+	23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD	A0A2K5B251	Erysipelothrix_phage	4.9e-125	50.3
QAT26514.1\|819666_820659_+	Gfo/Idh/MocA family oxidoreductase	NA	NA	NA	NA
QAT25131.1\|820764_822072_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	7.5e-30	28.7
QAT25132.1\|822296_822938_+	redox-sensing transcriptional repressor Rex	NA	NA	NA	NA
QAT25133.1\|823144_824062_+	hypothetical protein	NA	NA	NA	NA
QAT25134.1\|824054_824936_+	hypothetical protein	NA	NA	NA	NA
QAT25135.1\|825036_825762_+	class A sortase	NA	NA	NA	NA
QAT25136.1\|825807_826464_-	metal-dependent transcriptional regulator	NA	NA	NA	NA
QAT25137.1\|826647_826962_+	hypothetical protein	NA	NA	NA	NA
QAT25138.1\|827040_827937_-\|transposase	IS3 family transposase	A0A1B1P773	Bacillus_phage	1.9e-45	39.8
QAT25139.1\|827891_828398_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_3

843558 : 876419

Enterococcus_phage(33.33%)

portal,head,integrase,tail,capsid,terminase

attL 843528:843552|attR 878840:878864

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
843528:843552	attL	NA	NA	NA	NA
QAT25154.1\|843558_844650_-\|integrase	site-specific integrase	E3W8I1	Leuconostoc_phage	6.9e-37	31.7
QAT25155.1\|845218_845731_-	hypothetical protein	A0A0A1ERB0	Lactobacillus_phage	7.5e-10	62.5
QAT25156.1\|845843_846140_-	hypothetical protein	Q6SEG0	Lactobacillus_prophage	9.0e-24	52.0
QAT25157.1\|846209_846575_-	hypothetical protein	NA	NA	NA	NA
QAT25158.1\|846795_847203_-	ImmA/IrrE family metallo-endopeptidase	E3W8B8	Leuconostoc_phage	3.5e-10	35.2
QAT25159.1\|847199_847544_-	XRE family transcriptional regulator	A0A141DZM2	Streptococcus_phage	9.8e-14	40.7
QAT25160.1\|848046_848799_+	oxidoreductase	E3W8C2	Leuconostoc_phage	8.8e-84	67.6
QAT25161.1\|848801_849035_+	hypothetical protein	NA	NA	NA	NA
QAT25162.1\|849084_849309_+	hypothetical protein	NA	NA	NA	NA
QAT25163.1\|849298_849487_+	hypothetical protein	NA	NA	NA	NA
QAT25164.1\|849476_850004_+	hypothetical protein	NA	NA	NA	NA
QAT25165.1\|850312_851239_+	DUF1351 domain-containing protein	A0A0P0IV40	Lactobacillus_phage	2.6e-13	27.8
QAT25166.1\|851249_852095_+	hypothetical protein	NA	NA	NA	NA
QAT25167.1\|852108_852819_+	hypothetical protein	D7RWH3	Brochothrix_phage	1.4e-35	40.1
QAT25168.1\|852781_853582_+	DnaD domain protein	A0A0S2MYA8	Enterococcus_phage	8.3e-40	63.2
QAT25169.1\|853581_854307_+	ATP-binding protein	Q6J1V5	Lactobacillus_phage	4.6e-21	33.2
QAT25170.1\|854309_854678_+	hypothetical protein	NA	NA	NA	NA
QAT25171.1\|854733_854940_+	XRE family transcriptional regulator	NA	NA	NA	NA
QAT25172.1\|854939_855506_+	hypothetical protein	NA	NA	NA	NA
QAT25173.1\|855505_855778_+	hypothetical protein	NA	NA	NA	NA
QAT25174.1\|855777_856026_+	hypothetical protein	NA	NA	NA	NA
QAT25175.1\|856022_856370_+	hypothetical protein	NA	NA	NA	NA
QAT25176.1\|856373_856562_+	hypothetical protein	NA	NA	NA	NA
QAT26515.1\|856574_856775_+	hypothetical protein	NA	NA	NA	NA
QAT25177.1\|856856_857270_+	ArpU family transcriptional regulator	NA	NA	NA	NA
QAT25178.1\|858368_858791_+\|terminase	terminase small subunit	A0A1Q1PVS8	Bacillus_phage	7.3e-11	34.8
QAT25179.1\|858783_860064_+\|terminase	PBSX family phage terminase large subunit	Q8SDU9	Staphylococcus_phage	1.3e-140	59.5
QAT25180.1\|860072_861620_+\|portal	phage portal protein	D2IZF6	Enterococcus_phage	3.7e-161	58.2
QAT25181.1\|861606_862542_+\|head	phage head morphogenesis protein	D2IYW4	Enterococcus_phage	2.0e-61	42.1
QAT25182.1\|862659_863235_+	DUF4355 domain-containing protein	A7J296	Streptococcus_phage	5.3e-12	42.6
QAT25183.1\|863252_864155_+\|capsid	phage capsid protein	D2IYW7	Enterococcus_phage	9.9e-82	55.4
QAT25184.1\|864169_864454_+	hypothetical protein	NA	NA	NA	NA
QAT25185.1\|864464_864806_+	hypothetical protein	G8FUY6	Pediococcus_virus	3.4e-19	42.1
QAT25186.1\|864805_865090_+	hypothetical protein	NA	NA	NA	NA
QAT25187.1\|865092_865455_+	hypothetical protein	A7J2A0	Streptococcus_phage	8.2e-11	35.2
QAT25188.1\|865451_865820_+	hypothetical protein	NA	NA	NA	NA
QAT25189.1\|865828_866443_+\|tail	phage major tail protein, TP901-1 family	D2IYX2	Enterococcus_phage	1.5e-57	55.4
QAT25190.1\|866528_866969_+	hypothetical protein	D2IZN3	Enterococcus_phage	4.9e-10	30.2
QAT25191.1\|867061_867268_+	hypothetical protein	D2IYX5	Enterococcus_phage	2.0e-06	45.5
QAT25192.1\|867284_870419_+\|tail	phage tail tape measure protein	A0A1B1SDY9	Weissella_phage	4.8e-99	65.8
QAT25193.1\|870428_871325_+\|tail	phage tail protein	D2IYX7	Enterococcus_phage	9.0e-51	40.3
QAT25194.1\|871334_876419_+	hypothetical protein	A0A1B1SDS2	Weissella_phage	6.3e-141	57.5
878840:878864	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1663960 : 1672605

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT25866.1\|1663960_1664554_-	phosphoribosylglycinamide formyltransferase	E3SNR5	Prochlorococcus_phage	1.8e-23	38.9
QAT25867.1\|1664544_1665585_-	phosphoribosylformylglycinamidine cyclo-ligase	A0A0E3F0L1	Synechococcus_phage	4.1e-55	40.5
QAT25868.1\|1665599_1667135_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	6.1e-47	33.1
QAT25869.1\|1667119_1669342_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.9e-138	39.8
QAT25870.1\|1669338_1670022_-	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
QAT25871.1\|1670023_1670281_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
QAT25872.1\|1670283_1671009_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	A0A0E3HWF9	Synechococcus_phage	2.1e-29	34.2
QAT25873.1\|1671005_1672124_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
QAT25874.1\|1672116_1672605_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	2.9e-19	40.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage