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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP033388 Akkermansia muciniphila strain CBA5201 chromosome, complete genome 4 crisprs DEDDh,csa3,DinG,cas3,cas4,cas2,cas1,cas9 1 10 0 0

Results visualization

1. CP033388
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033388_1 327350-327452 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033388_2 2637936-2638762 TypeII NA
12 spacers
cas2,cas1,cas9

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033388_3 2706861-2707095 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP033388_4 2707429-2707924 Orphan NA
7 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP033388_1 1.1|327386|31|CP033388|CRISPRCasFinder 327386-327416 31 CP033388.1 26472-26502 1 0.968

1. spacer 1.1|327386|31|CP033388|CRISPRCasFinder matches to position: 26472-26502, mismatch: 1, identity: 0.968

agaagggaggccagcagggagaaagcaagta	CRISPR spacer
agaagagaggccagcagggagaaagcaagta	Protospacer
*****.*************************

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP033388_4 4.7|2707597|37|CP033388|CRT 2707597-2707633 37 NZ_AP021899 Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence 21419-21455 5 0.865
CP033388_2 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638235-2638264 30 NZ_CP013038 Clostridium perfringens strain JP838 plasmid pJFP838E, complete sequence 13557-13586 6 0.8
CP033388_2 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638235-2638264 30 NZ_CP013045 Clostridium perfringens strain JP55 plasmid pJFP55K, complete sequence 12960-12989 6 0.8
CP033388_2 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638301-2638330 30 MK967385 Gordonia phage SheckWes, complete genome 31881-31910 6 0.8
CP033388_2 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT 2638565-2638594 30 MK967385 Gordonia phage SheckWes, complete genome 31881-31910 6 0.8
CP033388_2 2.11|2638631|30|CP033388|CRISPRCasFinder,CRT 2638631-2638660 30 MN131137 Aeromonas phage D6, complete genome 174099-174128 6 0.8
CP033388_2 2.11|2638631|30|CP033388|CRISPRCasFinder,CRT 2638631-2638660 30 MK838116 Aeromonas phage LAh10, complete genome 120376-120405 6 0.8
CP033388_2 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638235-2638264 30 KY065495 Streptococcus phage IPP58, complete genome 9006-9035 7 0.767
CP033388_2 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638235-2638264 30 KY065485 Streptococcus phage IPP45, complete genome 8110-8139 7 0.767
CP033388_2 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638235-2638264 30 KY065499 Streptococcus phage IPP63, complete genome 9761-9790 7 0.767
CP033388_2 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638235-2638264 30 KY065498 Streptococcus phage IPP62, complete genome 8276-8305 7 0.767
CP033388_2 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638235-2638264 30 KY065494 Streptococcus phage IPP57, complete genome 9006-9035 7 0.767
CP033388_2 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638301-2638330 30 MT776810 Gordonia phage BigChungus, complete genome 31822-31851 7 0.767
CP033388_2 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638301-2638330 30 MN586015 Gordonia phage Lauer, complete genome 33223-33252 7 0.767
CP033388_2 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638301-2638330 30 MT776808 Gordonia phage Feastonyeet, complete genome 31822-31851 7 0.767
CP033388_2 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638301-2638330 30 MN062716 Gordonia phage Mayweather, complete genome 33291-33320 7 0.767
CP033388_2 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT 2638565-2638594 30 MT776810 Gordonia phage BigChungus, complete genome 31822-31851 7 0.767
CP033388_2 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT 2638565-2638594 30 MN586015 Gordonia phage Lauer, complete genome 33223-33252 7 0.767
CP033388_2 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT 2638565-2638594 30 MT776808 Gordonia phage Feastonyeet, complete genome 31822-31851 7 0.767
CP033388_2 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT 2638565-2638594 30 MN062716 Gordonia phage Mayweather, complete genome 33291-33320 7 0.767
CP033388_3 3.1|2706900|28|CP033388|PILER-CR 2706900-2706927 28 NZ_CP014310 Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence 421743-421770 7 0.75
CP033388_2 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638301-2638330 30 NC_013857 Azospirillum sp. B510 plasmid pAB510c, complete sequence 584116-584145 8 0.733
CP033388_2 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT 2638565-2638594 30 NC_013857 Azospirillum sp. B510 plasmid pAB510c, complete sequence 584116-584145 8 0.733
CP033388_2 2.2|2638038|30|CP033388|CRISPRCasFinder,CRT 2638038-2638067 30 NZ_CP024314 Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence 1498720-1498749 9 0.7
CP033388_2 2.8|2638433|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638433-2638462 30 NZ_CP047143 Lactobacillus sp. C25 plasmid unnamed, complete sequence 124199-124228 9 0.7
CP033388_2 2.8|2638433|30|CP033388|CRISPRCasFinder,CRT,PILER-CR 2638433-2638462 30 NZ_CP014235 Moraxella osloensis strain CCUG 350 plasmid unnamed4, complete sequence 16468-16497 9 0.7
CP033388_4 4.16|2707860|32|CP033388|CRISPRCasFinder 2707860-2707891 32 NC_011892 Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence 118881-118912 9 0.719
CP033388_4 4.15|2707858|34|CP033388|PILER-CR 2707858-2707891 34 NC_011892 Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence 118879-118912 10 0.706
CP033388_4 4.16|2707860|32|CP033388|CRISPRCasFinder 2707860-2707891 32 NC_013859 Azospirillum sp. B510 plasmid pAB510e, complete sequence 136565-136596 10 0.688
CP033388_4 4.16|2707860|32|CP033388|CRISPRCasFinder 2707860-2707891 32 NC_013857 Azospirillum sp. B510 plasmid pAB510c, complete sequence 248360-248391 11 0.656

1. spacer 4.7|2707597|37|CP033388|CRT matches to NZ_AP021899 (Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence) position: , mismatch: 5, identity: 0.865

cgacagcgcagcaggccatccgcgaaaccctgcgcca	CRISPR spacer
aggaagcgcagcgggccatccgcgaagccctgcgcca	Protospacer
 *. ********.*************.**********

2. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013038 (Clostridium perfringens strain JP838 plasmid pJFP838E, complete sequence) position: , mismatch: 6, identity: 0.8

ttgaataattacaccactctacaaaagtat	CRISPR spacer
ctggataatttcaccactctacaaaataac	Protospacer
.**.****** ***************  *.

3. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013045 (Clostridium perfringens strain JP55 plasmid pJFP55K, complete sequence) position: , mismatch: 6, identity: 0.8

ttgaataattacaccactctacaaaagtat	CRISPR spacer
ctggataatttcaccactctacaaaataac	Protospacer
.**.****** ***************  *.

4. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to MK967385 (Gordonia phage SheckWes, complete genome) position: , mismatch: 6, identity: 0.8

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgctt	Protospacer
*.********.** ***********   **

5. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to MK967385 (Gordonia phage SheckWes, complete genome) position: , mismatch: 6, identity: 0.8

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgctt	Protospacer
*.********.** ***********   **

6. spacer 2.11|2638631|30|CP033388|CRISPRCasFinder,CRT matches to MN131137 (Aeromonas phage D6, complete genome) position: , mismatch: 6, identity: 0.8

-caaaatgcaacgaccgcatgaaggctatcg	CRISPR spacer
acatcac-caacatccgcatgaaggctatcg	Protospacer
 **  *. ****. *****************

7. spacer 2.11|2638631|30|CP033388|CRISPRCasFinder,CRT matches to MK838116 (Aeromonas phage LAh10, complete genome) position: , mismatch: 6, identity: 0.8

-caaaatgcaacgaccgcatgaaggctatcg	CRISPR spacer
acatcac-caacatccgcatgaaggctatcg	Protospacer
 **  *. ****. *****************

8. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to KY065495 (Streptococcus phage IPP58, complete genome) position: , mismatch: 7, identity: 0.767

ttgaataattacaccactctacaaaagtat	CRISPR spacer
aaaaataattacatcactctacataaatct	Protospacer
  .**********.********* **.* *

9. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to KY065485 (Streptococcus phage IPP45, complete genome) position: , mismatch: 7, identity: 0.767

ttgaataattacaccactctacaaaagtat	CRISPR spacer
agaaataattacatcactctacataaatct	Protospacer
  .**********.********* **.* *

10. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to KY065499 (Streptococcus phage IPP63, complete genome) position: , mismatch: 7, identity: 0.767

ttgaataattacaccactctacaaaagtat	CRISPR spacer
aaaaataattacatcactctacataaatct	Protospacer
  .**********.********* **.* *

11. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to KY065498 (Streptococcus phage IPP62, complete genome) position: , mismatch: 7, identity: 0.767

ttgaataattacaccactctacaaaagtat	CRISPR spacer
agaaataattacatcactctacataaatct	Protospacer
  .**********.********* **.* *

12. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to KY065494 (Streptococcus phage IPP57, complete genome) position: , mismatch: 7, identity: 0.767

ttgaataattacaccactctacaaaagtat	CRISPR spacer
aaaaataattacatcactctacataaatct	Protospacer
  .**********.********* **.* *

13. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to MT776810 (Gordonia phage BigChungus, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

14. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to MN586015 (Gordonia phage Lauer, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

15. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to MT776808 (Gordonia phage Feastonyeet, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

16. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to MN062716 (Gordonia phage Mayweather, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

17. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to MT776810 (Gordonia phage BigChungus, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

18. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to MN586015 (Gordonia phage Lauer, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

19. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to MT776808 (Gordonia phage Feastonyeet, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

20. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to MN062716 (Gordonia phage Mayweather, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

21. spacer 3.1|2706900|28|CP033388|PILER-CR matches to NZ_CP014310 (Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.75

gggaggggaaataacatggacg-cgttgc	CRISPR spacer
tggagggcaaataacatggacgatacta-	Protospacer
 ****** ************** ...*. 

22. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 8, identity: 0.733

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
tcggcgcgttgatggcctgacgctcggcga	Protospacer
. **** ***.***************    

23. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 8, identity: 0.733

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
tcggcgcgttgatggcctgacgctcggcga	Protospacer
. **** ***.***************    

24. spacer 2.2|2638038|30|CP033388|CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 9, identity: 0.7

agttattggcaaacgccgtagcgttcgttt	CRISPR spacer
gcagactgtcaaacgccgtagcgttcgcgc	Protospacer
.   *.** ******************. .

25. spacer 2.8|2638433|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047143 (Lactobacillus sp. C25 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ccgccaagcaccttaagtctatatatgact	CRISPR spacer
tcataggcgaccttaagtctatatatgtct	Protospacer
.*.. ..  ****************** **

26. spacer 2.8|2638433|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014235 (Moraxella osloensis strain CCUG 350 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.7

ccgccaagcaccttaagtctatatatgact	CRISPR spacer
gcgccaagcaccttaactctattaccagca	Protospacer
 *************** *****   ...* 

27. spacer 4.16|2707860|32|CP033388|CRISPRCasFinder matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 9, identity: 0.719

ttgccgacggaggcgtccgccccgagaagacc	CRISPR spacer
ggcaggacggcggcgtccgccccgagcagcgc	Protospacer
     ***** *************** **  *

28. spacer 4.15|2707858|34|CP033388|PILER-CR matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 10, identity: 0.706

gcttgccgacggaggcgtccgccccgagaagacc	CRISPR spacer
ggggcaggacggcggcgtccgccccgagcagcgc	Protospacer
*      ***** *************** **  *

29. spacer 4.16|2707860|32|CP033388|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 10, identity: 0.688

ttgccgacggaggcgtccgccccgagaagacc	CRISPR spacer
gtggcggcggaggcgtccgccccggcgctggc	Protospacer
 ** **.*****************. .  . *

30. spacer 4.16|2707860|32|CP033388|CRISPRCasFinder matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 11, identity: 0.656

ttgccgacggaggcgtccgccccgagaagacc	CRISPR spacer
gggcagacggaggcgtccggcccgatgccggt	Protospacer
  ** ************** ***** .  . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage