CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP033388	Akkermansia muciniphila strain CBA5201 chromosome, complete genome	4 crisprs	DEDDh,csa3,DinG,cas3,cas4,cas2,cas1,cas9	1	10	0	0

Cas Category Instructions

Results visualization

1. CP033388

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CRISPR-Cas detection and classification

Crispr_ID: CP033388_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033388_1

327350-327452

Orphan

Consensus_repeat	Method
CCCTGCCGCTCCCGGAAAAAAACAGGAACCGAACAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP033388_1

>merge|CP033388|1|327350-327452|CRISPRCasFinder
CCCTGCCGCTCCCGGAAAAAAACAGGAACCGAACAGAGAAGGGAGGCCAGCAGGGAGAAAGCAAGTACCCTGCCGCTCCCGGAAAAAAACAGGAACCGAACAG

>CP033388|1|1|327350-327452|CRISPRCasFinder
CCCTGCCGCTCCCGGAAAAAAACAGGAACCGAACAG	AGAAGGGAGGCCAGCAGGGAGAAAGCAAGTA
CCCTGCCGCTCCCGGAAAAAAACAGGAACCGAACAG

Protein	Signature genes	Signature genes Name	Protein_function
CP033388.1\|QAT90714.1\|323691_324174_+\|rhodanese-like-domain-containing-protein	unknown	unknown	gnl\|CDD\|366179
CP033388.1\|QAT90720.1\|330239_331808_-\|TIGR03790-family-protein	unknown	unknown	gnl\|CDD\|274784
CP033388.1\|QAT90712.1\|322230_323004_+\|signal-peptidase-II	unknown	unknown	gnl\|CDD\|376504
CP033388.1\|QAT90708.1\|317276_317783_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|349893
CP033388.1\|QAT90718.1\|329445_329667_+\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT90722.1\|333984_334431_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|377277
CP033388.1\|QAT90707.1\|314895_317262_+\|glycoside-hydrolase-family-95-protein	unknown	unknown	gnl\|CDD\|379625
CP033388.1\|QAT90719.1\|329782_330130_-\|50S-ribosomal-protein-L19	unknown	unknown	gnl\|CDD\|235418
CP033388.1\|QAT92684.1\|331943_332366_+\|methylmalonyl-CoA-epimerase	unknown	unknown	gnl\|CDD\|319912
CP033388.1\|QAT90723.1\|334502_334913_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	unknown	unknown	gnl\|CDD\|223585
CP033388.1\|QAT90709.1\|317710_318367_+\|M28-family-peptidase	unknown	unknown	gnl\|CDD\|349893
CP033388.1\|QAT90716.1\|325440_327174_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|224001
CP033388.1\|QAT90710.1\|318363_319398_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223730
CP033388.1\|QAT90711.1\|319470_322200_+\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
CP033388.1\|QAT90721.1\|332397_333963_+\|acyl-CoA-carboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|130187
CP033388.1\|QAT90715.1\|324176_325403_+\|SufS-family-cysteine-desulfurase	unknown	unknown	gnl\|CDD\|99746
CP033388.1\|QAT90725.1\|336693_337473_+\|biotin--[acetyl-CoA-carboxylase]-ligase	unknown	unknown	gnl\|CDD\|223417
CP033388.1\|QAT90713.1\|323011_323674_+\|DUF1573-domain-containing-protein	unknown	unknown	gnl\|CDD\|377880
CP033388.1\|QAT90724.1\|334991_336656_+\|sodium-ion-translocating-decarboxylase-subunit-beta	unknown	unknown	gnl\|CDD\|377182
CP033388.1\|QAT90717.1\|327715_329359_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|270916

Protein	Function_ID	Function_description	E-value
CP033388.1\|QAT90714.1\|323691_324174_+\|rhodanese-like-domain-containing-protein	gnl\|CDD\|366179	pfam00581, Rhodanese, Rhodanese-like domain. Rhodanese has an internal duplication. This Pfam represents a single copy of this duplicated domain. The domain is found as a single copy in other proteins, including phosphatases and ubiquitin C-terminal hydrolases.	5.88433e-05
CP033388.1\|QAT90720.1\|330239_331808_-\|TIGR03790-family-protein	gnl\|CDD\|274784	TIGR03790, conserved_hypothetical_protein, TIGR03790 family protein. Despite a broad and sporadic distribution (Cyanobacteria, Verrucomicrobia, Acidobacteria, beta and delta Proteobacteria, and Planctomycetes), this uncharacterized protein family occurs only among the roughly 8 percent of prokarotyic species that carry homologs of the integral membrane protein exosortase (see TIGR02602), a proposed protein-sorting system transpeptidase.	2.64029e-146
CP033388.1\|QAT90712.1\|322230_323004_+\|signal-peptidase-II	gnl\|CDD\|376504	pfam01252, Peptidase_A8, Signal peptidase (SPase) II.	2.26353e-33
CP033388.1\|QAT90708.1\|317276_317783_+\|hypothetical-protein	gnl\|CDD\|349893	cd05640, M28_like, M28 Zn-peptidase; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	2.47037e-10
CP033388.1\|QAT90719.1\|329782_330130_-\|50S-ribosomal-protein-L19	gnl\|CDD\|235418	PRK05338, rplS, 50S ribosomal protein L19; Provisional.	1.12306e-62
CP033388.1\|QAT90722.1\|333984_334431_+\|hypothetical-protein	gnl\|CDD\|377277	pfam04277, OAD_gamma, Oxaloacetate decarboxylase, gamma chain.	0.00203676
CP033388.1\|QAT90707.1\|314895_317262_+\|glycoside-hydrolase-family-95-protein	gnl\|CDD\|379625	pfam14498, Glyco_hyd_65N_2, Glycosyl hydrolase family 65, N-terminal domain. This domain represents a domain found to the N-terminus of the glycosyl hydrolase 65 family catalytic domain.	1.38852e-38
CP033388.1\|QAT92684.1\|331943_332366_+\|methylmalonyl-CoA-epimerase	gnl\|CDD\|319912	cd07249, MMCE, Methylmalonyl-CoA epimerase (MMCE). MMCE, also called methylmalonyl-CoA racemase (EC 5.1.99.1) interconverts (2R)-methylmalonyl-CoA and (2S)-methylmalonyl-CoA. MMCE has been found in bacteria, archaea, and in animals. In eukaryotes, MMCE is an essential enzyme in a pathway that converts propionyl-CoA to succinyl-CoA, and is important in the breakdown of odd-chain length fatty acids, branched-chain amino acids, and other metabolites. In bacteria, MMCE participates in the reverse pathway for propionate fermentation, glyoxylate regeneration, and the biosynthesis of polyketide antibiotics. MMCE is closely related to glyoxalase I and type I extradiol dioxygenases.	1.79473e-51
CP033388.1\|QAT90723.1\|334502_334913_+\|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit	gnl\|CDD\|223585	COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism].	2.17431e-27
CP033388.1\|QAT90709.1\|317710_318367_+\|M28-family-peptidase	gnl\|CDD\|349893	cd05640, M28_like, M28 Zn-peptidase; uncharacterized subfamily. Peptidase family M28 (also called aminopeptidase Y family), uncharacterized subfamily. The M28 family contains aminopeptidases as well as carboxypeptidases. They have co-catalytic zinc ions; each zinc ion is tetrahedrally co-ordinated, with three amino acid ligands plus activated water; one aspartate residue binds both metal ions.	1.00619e-43
CP033388.1\|QAT90716.1\|325440_327174_+\|alpha/beta-hydrolase	gnl\|CDD\|224001	COG1075, LipA, Predicted acetyltransferases and hydrolases with the alpha/beta hydrolase fold [General function prediction only].	0.000723666
CP033388.1\|QAT90710.1\|318363_319398_+\|alpha/beta-hydrolase	gnl\|CDD\|223730	COG0657, Aes, Esterase/lipase [Lipid metabolism].	5.18722e-25
CP033388.1\|QAT90711.1\|319470_322200_+\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
CP033388.1\|QAT90721.1\|332397_333963_+\|acyl-CoA-carboxylase-subunit-beta	gnl\|CDD\|130187	TIGR01117, methylmalonyl-CoA_decarboxylase_alpha-subunit, methylmalonyl-CoA decarboxylase alpha subunit. This model describes methymalonyl-CoA decarboxylase aplha subunit in archaea and bacteria. Metylmalonyl-CoA decarboxylase Na+ pump is a representative of a class of Na+ transport decarboxylases that couples the energy derived by decarboxylation of carboxylic acid substrates to drive the extrusion of Na+ ion across the membrane. [Energy metabolism, ATP-proton motive force interconversion, Energy metabolism, Fermentation, Transport and binding proteins, Cations and iron carrying compounds].	0
CP033388.1\|QAT90715.1\|324176_325403_+\|SufS-family-cysteine-desulfurase	gnl\|CDD\|99746	cd06453, SufS_like, Cysteine desulfurase (SufS)-like. This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.	0
CP033388.1\|QAT90725.1\|336693_337473_+\|biotin--[acetyl-CoA-carboxylase]-ligase	gnl\|CDD\|223417	COG0340, BirA, Biotin-(acetyl-CoA carboxylase) ligase [Coenzyme metabolism].	7.81894e-42
CP033388.1\|QAT90713.1\|323011_323674_+\|DUF1573-domain-containing-protein	gnl\|CDD\|377880	pfam07610, DUF1573, Protein of unknown function (DUF1573). These hypothetical proteins, from bacteria such as Rhodopirellula baltica, Bacteroides thetaiotaomicron, and Porphyromonas gingivalis, share a region of conserved sequence towards their N-termini.	7.44539e-20
CP033388.1\|QAT90724.1\|334991_336656_+\|sodium-ion-translocating-decarboxylase-subunit-beta	gnl\|CDD\|377182	pfam03977, OAD_beta, Na+-transporting oxaloacetate decarboxylase beta subunit. Members of this family are integral membrane proteins. The decarboxylation reactions they catalyze are coupled to the vectorial transport of Na+ across the cytoplasmic membrane, thereby creating a sodium ion motive force that is used for ATP synthesis.	0
CP033388.1\|QAT90717.1\|327715_329359_+\|hypothetical-protein	gnl\|CDD\|270916	cd14014, STKc_PknB_like, Catalytic domain of bacterial Serine/Threonine kinases, PknB and similar proteins. STKs catalyze the transfer of the gamma-phosphoryl group from ATP to serine/threonine residues on protein substrates. This subfamily includes many bacterial eukaryotic-type STKs including Staphylococcus aureus PknB (also called PrkC or Stk1), Bacillus subtilis PrkC, and Mycobacterium tuberculosis Pkn proteins (PknB, PknD, PknE, PknF, PknL, and PknH), among others. S. aureus PknB is the only eukaryotic-type STK present in this species, although many microorganisms encode for several such proteins. It is important for the survival and pathogenesis of S. aureus as it is involved in the regulation of purine and pyrimidine biosynthesis, cell wall metabolism, autolysis, virulence, and antibiotic resistance. M. tuberculosis PknB is essential for growth and it acts on diverse substrates including proteins involved in peptidoglycan synthesis, cell division, transcription, stress responses, and metabolic regulation. B. subtilis PrkC is located at the inner membrane of endospores and functions to trigger spore germination. Bacterial STKs in this subfamily show varied domain architectures. The well-characterized members such as S. aureus and M. tuberculosis PknB, and B. subtilis PrkC, contain an N-terminal cytosolic kinase domain, a transmembrane (TM) segment, and mutliple C-terminal extracellular PASTA domains. The PknB subfamily is part of a larger superfamily that includes the catalytic domains of other protein STKs, protein tyrosine kinases, RIO kinases, aminoglycoside phosphotransferase, choline kinase, and phosphoinositide 3-kinase.	1.72913e-15

>CP033388.1|QAT90716.1|325440_327174_+|alpha/beta-hydrolase
MKTVSILLLGLAIGLSGCSLHQRQEMEYAHYQDDAAAIREAHAAWLILSSPSRSREWPEARKKYNACIRELAAHLKEAKRKGGMDEEKRLSLPFVIEKSPYAKDSNPWFYEAIFMSDEVDPTFRLRESVTVEGMGIPLAGLAPRGGSRPHANVLKDNGNVHTLTAILDFDRMVDGKPTLRTIPRLMNEHIFIGKNKVRQPLAANFSVPIALFWKLSDADGTELLGAFRPKKAINTMGLYFSEPYDPRKIPVVFTHGLMSGPATFANLTNRLLVDPVIRENYQFWFFGYPSGLAWTIPASRQRQALKELMQEYNPRGTSREMNNIVMVGHSMGGLITRFNNSTKPWTLMKGVFELSPETFEGMTLENWKKGMAPLHYDEQTLERLQNNFIFSPPQGVTRIVYMATPHRGSTFADNWIGRLGQRLIDLPSDMLEEVTRIATLSRGMFLLNPLQLKDELTSIRQLSPNSSLVKYMSELRGSPNVPVHSIIGDRGRNDTPNSSDGVVKYHSSHLDWSASEKIVPSGHSVQDDPASAVELRRILREHLVKVKGRKTLEEADAKAATPVWQANPSPPIILKRP
>CP033388.1|QAT90715.1|324176_325403_+|SufS-family-cysteine-desulfurase
MLDTATIRPQFPILETSVHGKPLIYLDNAATTQKPLAVLDAIRHYYDTENANVHRGSHYLSQLATEAHEESRETVARFINAPETAEVLFTSGCTMGINLAADTIAASGMVKPGDEVIVTASEHHSNIVPWQMLCGRTGAVLKAVPLMPGQTLDMEAYRNMLSPRTRIVAVGHVSNTLGTVNPVREMASLAKANRQETIVLIDGAQAVSHMNVDVQELGCDLYAFSGHKLYAPTGIGALWGKRELLEKLPPWMGGGEMIKEVTFEKTIYNDIPFKYEAGTPNIGGAVGLAAAIRYVSGLGLNNIAAHEQKLTDMAVEGLKAMPRLTVLAPDAPHSAVVSVLAEGIHHYDLGTLLDQMGIAVRTGHHCCQPLMCSLGTTGTTRASFALYNTEEEVQAFLKSMNRALDMLS
>CP033388.1|QAT90714.1|323691_324174_+|rhodanese-like-domain-containing-protein
MRDAFSTALKLLLAVFLLAVGVAALDLRVIQPFRTPPCNPETLEEGHVCLSQVLKEWPGKILWIDARKQDDFERHTVTQAPVYPIRPADANYQELLANAMEALMTAEDKGFCIVIFCSRDCTSSAAVANELKKPEYGIRAPIFILEGGWDELRKEPSLVP
>CP033388.1|QAT90713.1|323011_323674_+|DUF1573-domain-containing-protein
MTTRLVILSGLLLCGSLASGKNELYFKETVVPVKVAPDQDSITASFPFTNTSGTPVTISKIHVSCDCTTAGAKDNKLTYAPGESGVISAVMKTGNFSGTVDKDMTVHANGSAYKLVIRAQIPDIIRMEPRKLEWARGEAAAPKTIKITISKELPVNLTTVDLTGDAFDYEPVTVKKGREYKIIVTPKSTARPAFNTIWVRTDSAVPRYKRQMGFLAIKEN
>CP033388.1|QAT90712.1|322230_323004_+|signal-peptidase-II
MDPQTEKEPAPHKKTPPGWLWWSLLGAGLYVLDQASKLWIIRRFPLNYLNEKLHKYAYLPDFPGFSHINADGTLDFATNGHMPEAELARLPDLNPNTVDALNKLRELEPISFLDGTMNITRVHNTGVAFGLGNGTVWSSYLFLAVPVLAIVVLVVLYRKNLFHTAWLKLAYVLLLAGVAGNLTDRLIQGFLIPYEQQHGFFTKLMNGYVVDFIDVTIPLFNYRWPAFNVADSCIFVAAIIFFIASIFSAKNKEEKTS
>CP033388.1|QAT90711.1|319470_322200_+|isoleucine--tRNA-ligase
MSAPEKNYKDTILLPETGFPMRGDLTKNEPVRLKKWEDTGLYERILSRRMAQGAPRFLLHDGPPFANGDVHMGTALNKILKDLVLKSKTMAGYAAPYVPGWDCHGLPIEFKVVQKARDLDAAEIRRRCAEFAKGFIDIQRTSFRRLGVFGDWENPYLTMKPAYEANILRVFAKLVEDGAVYQSRKPVQWSYGAYTALAEAEIDYKEKVSTSVFVRFPLLDNPLGLKASMVIWTTTPWTLPANVGLALHPRFTYVAGRFMKNGQTENLVIVKELLDAFAQKTGWALAETIREFKGAELENCEARHPFLSRTSTIILADFVTTDTGTGIVHIAPGHGADDYNVGRQYGLPVLSPVDDDGKYTEEVGVPSLVGKHVFDANKDIISMLEQGNNLFGVEEYRHQYPHCWRSKTPIIFRAVEQFFISMDKLRPQALEEIDKVQWLPSWGRNRIYGTVEARPDWCISRQRTWGVPLPVFFDENGKAVLDAALVRKIADMVEKHGSNIWFELSDEDLCERLGLPKTWKKGKDTLDVWIDSGSSHMAVMDNRPGLDAPADLYLEATDQHRGWFQSSLMLSVAWRGKAPYKAVMTHGFVVDKDTGKKTSKSDAKSGKPIDAAYYYDKYGADIVRLWAASVDWQNEVPFGEDLFKQVTEPYRRLRNTLRILLGNISGFDFAAQAVAPEHMPLLDRWILERLNAVIRETLKAYEAYDFRKAFSAINQFCTSDLSALYVDTTKDRLYCDSSSSVRRRATQTAMTIIFKALCRLLAPILAFTADEAWEYAGYEGSVHEQDFPAPMPEYDTQEATSVISRLQEIRSVIQVAIEEQVKAKVFSKNNEASITLTVPVNESEDVVALLEDRAFATEFFIIADLDVKTGPELAASAAKTEHAMCPRCRRYEPAAEGGDVCERCAEVLS
>CP033388.1|QAT90710.1|318363_319398_+|alpha/beta-hydrolase
MNMNPVFFSAFFPAFACAAAVPPEPSALEAICPPSEGKAFHSGWISLGLKAADLKEKQVSAGHITDVGEAQVLLHFPAGWKPQDRRTALCIFPGGGYSIQAIEKEGSRIAGWAAEHGMVGVVVKYRVSGTSNALGKFPGPLLDARQALRTVRENASSLGIDPLRIGVMGFSAGGHLAAMTSTLWNRTLPEEAENPLKNISARPDFSMFIYPVITMAPHTTHGGTRNKILGPHPSPALEEMCSAERQVTKQTPPVFLVHALDDGVSCANSRLMEQACRNKGVPVSLNLYPTGGHGYGMEKRGHPTDQWPDAAEQWLKEQGFLPSPASARGGAPSGAVPSSGTRRE
>CP033388.1|QAT90709.1|317710_318367_+|M28-family-peptidase
MARPGPARPSRTGTPGANDNASGVAALLETARALAATSTLHDVCLVAYANEEPPFYQTPAMGSAVHAKSVSHHPGRKKIIGMIALETLGCYSPRVNKKRQSAVVAGLAGLPDRCDYVAFLSTNTGRKLARSCAEEFSALSRFPVRSAVFPYYARGVSWSDDWGYMKEGIPSFAVTDTAFLRCDDYHETSDTAEKLDYPQFAEVVQGLSKLIISLANKP
>CP033388.1|QAT90708.1|317276_317783_+|hypothetical-protein
MTFPTSGMHFYSMTFRLSLLMAVVCIALSSCSKLFSPRGSGKIPDTDQTETLLKAHVFHLSDSIGERNVYHPGSMERSARYIEQKLEGMGYAVTRQAVRIPPSGKFGSVKDWTAYNLIAIKRGTSPRPKMFIVGAHYDTKVGMDNWHDQVLPGLPAPERREPMTTLPA
>CP033388.1|QAT90707.1|314895_317262_+|glycoside-hydrolase-family-95-protein
MNVPATLKHSFLLCLFAAAVPLWAIPAPMQVTAATPARVWTEGYGTGNGRLGILSFGVFPKETVVLNEGSIFAKKNFQMREGAAEALDKARELCKEGKYRSADQLFRKNILPPGNIAGDYQQGGRLQVEFQGLPSPSSYQRTLDMRRGKATTRAQFGTGELTTEILAAPSSDCAAYHIACTMPSGCRVSLNLEHPDPASRIVAQPNGWALEGQGSNGGTRFENTVAILAPGASITRKGSTIILDSAREVLVLSSISTDYNIRKPETPLTHSLTAKNERILAKAQKAGWKKLAAETEDYFSRLMTRCQVDLGDSPAGVSAMTTAQRLERVKQGKKDPDLLEQLFQFGRFCTIAHTRPGQLPCGLQGLWNPELRAAWMGCYFLNINSQMNQWPSHVTGLGEFQSSYLDFVRSLRPHGEEFARFIKRDGFCFGHYTDCWKRTYFSGNNPEWGASLMNGAWACAHLVDSYRFTGDREDLKKSLPILESNARFIMSWFEDDGEGRYLSGPGVSPETGFYAPDGTGPNVLSYVSNGASHDQLLGRESLRNYIYACGELGVQTPTLLKAVQFLRKIPQPAIGPDGRVQEWRQPFEEMQKGHRHISHLYGLFPGTEWDILNTPEYAEAVRKSADFRRKYADMGNNGIRTGWSTAWLINLYAALGDGNAAEDRMYTMLRHYINSNLFDIHPPFQIDGNFGFSSGVAECLIQSRIMQDGFQVILLAPALADGWKKGSATGLRTRGGLKVDLSWQNGRVQATATATRPGKFRFMHQGRKKDLSMNKGETARLDFPPLSH
>CP033388.1|QAT90717.1|327715_329359_+|hypothetical-protein
MSADDSFPMDQISSLFPQLENIQLVGAKGPQQIFTATLKSNFAPVMLRVVPTEEAGIFGWDPEFIVRSLTIVEQSHQGLLRVYEVGQAEPFTFIISEHPPYPRMADMETLPQISPQAALNLVRNMAEGLLTLHRKNIFHGGITPKLICLREDGGDALLLPINIYPAQPPVDMGDFASPEWVTGAETTFTPGMDIYALGLALYILLTRKTPMEAGFAMPSSLIKCSDAVDSAVSRAINPDTRERYRDLGDFITDLDKAIANPAGRNAASIPPPPSSPAIPALNMQKGQSNIYYYLIPALIVGIVLTYTCILYKKDVVRMRNDYNEQVQKENNAKAEAARQANRDARRHAPATAQNAAAAIPSPVPAARPAQAPAVPKVSAEPGKVNWSLQPGVKVRQSSNRNMLGAYGPEKAVDGNTSSKISDVSISSTGVVEGKTAWFGIDFGRETNRTIEKVVIYTPANLTLLGTMEKFKVILYGNDKNVLAEKTFSTTPSEKSTNVTSWKLDAPVKARALRVESANPSQPLALTEVEAYGPEDAEDTPAPAPAEK
>CP033388.1|QAT90718.1|329445_329667_+|hypothetical-protein
MGQGLMECHTLSSWFGFAYEIFRFLLHSPEAIQARTEENPKNVFAPDRKQPPLSTFPTPEKRSHPHMAPGEIS
>CP033388.1|QAT90719.1|329782_330130_-|50S-ribosomal-protein-L19
MNIINKIEQEQLKADVTPFNVGDTIKVHTRVIEGGKERIQIFQGIVIAKRGSGINEAFTVRKISYGEGVERVFPLHTPRIAKIEVVNRGKVRRAKLHYLRGRIGKDAMIVKSANR
>CP033388.1|QAT90720.1|330239_331808_-|TIGR03790-family-protein
MPRKMRYGRGMFKSGLAVLFLLASWFSASCAYELLPAHVAVVYNGKSELSRRMAREYARVRGVPEGNLVSLDCPTTSEISRKEYEDTIRVPLLEAARKQRWWVPSGIASSPLMNRKIFVLVLMADLPMKIRHETPAPLPGKGVNQMQTDRAAVDSELALLAVGGYERKSWQVNPYFNKREDFVGSGLPSFLVCRLDGLTPDTCMRLVAEPANVEKKGLWGWAVVDRGGPYAQGDRWLDDVFERVREAGIPAYLDDWPQTLPEKFPLSRDTALYCGWYAGNANGPFSDPSFRFRPGAIAMHLHSFSAADFKVPGRGWSSALLEKGAAVTVGNVYEPFLGACHRFDIFVDRLLDGYTVAEASWMSMPVLSWQGLVFGDPLYRPYARMKDMDVEPTEEDRYFQGWWASSVQFGDRWKDRSARLMESARKAPFSCLYEALALECLYRKEPARAGELLSSALDGAADARTRARLLLEILMAERARGGNKAFLQRADGIRGLMSSSAFLPALEEWLARVAPPPDPPEK
>CP033388.1|QAT92684.1|331943_332366_+|methylmalonyl-CoA-epimerase
MIQQIDHIGIAVKSLDATVPYYRDALGLGEPHIEEVPTQKVRVAMFDVAGVHIELLEPTSPESAIAKAIEKKGEGIHHIAFKTNDIAGNISQAKEAGLTVLNDPPVPGAHNTQVTFLHPKCTFGVLTEFCQHPGGCECGK
>CP033388.1|QAT90721.1|332397_333963_+|acyl-CoA-carboxylase-subunit-beta
MAIDPKLIDDLNSRRKKVILSGGQEKIDKRHEKGEMTARDRMGYLFEEGTFSEIGMHVRHNCHNFGMGKKEIPGDGVVSGFGLVDGRPVACAASDFLAQGGSLGYMHAMKIADAQKYALKAGIPMVTVNDSGGARLQEGVAALSGYAQVFYNNVLASGVVPQISMILGPCAGGAAYSPALTDFIIMRNSGNAGMYITGPKVIEQVTYEKCTMDDIGSAAIHATVSGNVHFVADSDAHAMDILKRLLSFLPSNNTEEPPHKLDTPLDLSADEGMSDLIPGDNRTPLDVQPIISRLVDNGDFLEVHKDFAKNVVVGFGRICGVVVGIIANQPNVKAGCLDIDSSDKAARFIRFCNAFNIPLVNLVDVPGFLPGKNQERGGIIRHGAKLIFAYSQATVPKVTLIMRKAYGGAYIAMCCKDLGADAVFAWPGAEIAVMGAEGAVPVLYGRELKAVEDPAEKAKRQGELLEEYREAFYNPYVAAGMGQITEVINPEETRAKIAFALRTLLNKKEVRPAKKHGNIPL
>CP033388.1|QAT90722.1|333984_334431_+|hypothetical-protein
MLLTTLAFAQGIANVMNNLNYQIVGIMVVMMCLGGLAVILTISGSIAAAIQNRAKAKTAAPVAAPAAAPAAAGKPGMTPEMLAILSAAVDSAMTELTPEMVAVISAAVDAGLDGMSHRIVEIKQSPGSGYAAAGRAEIFASHRIRPSR
>CP033388.1|QAT90723.1|334502_334913_+|acetyl-CoA-carboxylase-biotin-carboxyl-carrier-protein-subunit
MMKKLRITVDGKVFDVSVELLDQVSSTTAAPAPAPVAAPAPAASAPVATPAPAPAPAPAPAPAAAGAGDVPSPLAGKVVSLDVAAGAPVKAGDQILTLEAMKMNTIIYAPASGTLTAFCVNPGDTVQEGQALAKIG
>CP033388.1|QAT90724.1|334991_336656_+|sodium-ion-translocating-decarboxylase-subunit-beta
MSLFDSLITFLQGMGVFSLSWQMVGMWGIAILLLYLGVAKQYEPLLMVPIAFGALIANIPDNGMLITQLNQQVISSNEQGEVTSTSLNNVGYLRVHVAPLQQTPAKVPANLTTPEARAQYLETMQQPMQVYPGSQLTVSKIKSVRESQEKAKADAARLGDDSLTVDPNLKDFQNVTEDNGNEPVFLLTNGEGTTVVRQQGVNYFDTSGNRVPVDLKTQKLEPLVVSAAGKYVAVGQHTQELLVTSIHGGLYDWIGLGIKAEIFPPIIFLGVGALTDFGPLLAAPRTLLLGAAAQVGVAATFFMALFMGFNPNEAASIGIIGGADGPTSIFLTMKLAPHLLGAVAVAAYTYMSLVPLIQPPIMALLTTKKERLIRMKSLRTVSKSEKLFFAVLVTIVTILLIPDASPLIGMLMLGNFLRECKVTERLVQASQNEIINIVTIFLGTSVGLTMQGDRFLQAETLLIILLGIVAFGVATAGGVIAAKLMNLIWRKNPVNPLIGSAGVSAVPMAARVSHNVGQKYDPSNYLLMHAMGPNVAGVIGTAVIAGYYIATLAK
>CP033388.1|QAT90725.1|336693_337473_+|biotin--[acetyl-CoA-carboxylase]-ligase
MNSAASFSTPPEEEGPCGDWTYHEWAEAFSTNDLARSLPPGHIAVCRVQTGGRGRFNRKWIGEEGGLWASFTVPLSAPADTAAGVHWGHLPLVAGLALFNMLRGMGLDSVRLRWPNDLLAGKSKLAGILVERPAENMAVIGIGINVFNDVASIAGEIKDPPARLADLVRDCPSLHAVMASLGSHLNQVLSVFSHGGVSALQEGLSRAWAGERPVSILTDDETVRGIFTGIDDQGNPVLSLPAGAVRTIPAHLINRLLEE

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Crispr_ID: CP033388_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033388_2

2637936-2638762

orTypeII

Consensus_repeat	Method
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CRISPRCasFinder
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CRT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	PILER-CR

12 spacers

cas2,cas1,cas9

The CRISPR arrays of CP033388_2

>merge|CP033388|2|2637936-2638762|CRISPRCasFinder,CRT,PILER-CR
ATTTTGTCTTGAATCCAAAATAAGGCACAGTACAATGTTCTTTCCGAACAGGGCGACGGGGGAACAGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATAGTTATTGGCAAACGCCGTAGCGTTCGTTTGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATCCAGCGCTTTGCTCGCTGCTACAGCCCCTAGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATAGCCAAAAGCGATCCTTACCTATAGTTTTGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATTTGAATAATTACACCACTCTACAAAAGTATGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATCAGGCGAGTTAATGGCCTGACGCTCGCATTGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATATGCAGGTTACTCTCATTTTGGAACGGTAGGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATCCGCCAAGCACCTTAAGTCTATATATGACTGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATACGGCCTAATATGGAAGGGCAATCGGCTTTGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATCAGGCGAGTTAATGGCCTGACGCTCGCATTGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATCAAAATGCAACGACCGCATGAAGGCTATCGGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAATCGAGGGACTTAACTATGACGCCGCCGATATGTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT

>CP033388|2|2|2637936-2638762|CRISPRCasFinder
ATTTTGTCTTGAATCCAAAATAAGGCACAGTACAAT	GTTCTTTCCGAACAGGGCGACGGGGGAACA
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	AGTTATTGGCAAACGCCGTAGCGTTCGTTT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CCAGCGCTTTGCTCGCTGCTACAGCCCCTA
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	AGCCAAAAGCGATCCTTACCTATAGTTTT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	TTGAATAATTACACCACTCTACAAAAGTAT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CAGGCGAGTTAATGGCCTGACGCTCGCATT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	ATGCAGGTTACTCTCATTTTGGAACGGTAG
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CCGCCAAGCACCTTAAGTCTATATATGACT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	ACGGCCTAATATGGAAGGGCAATCGGCTTT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CAGGCGAGTTAATGGCCTGACGCTCGCATT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CAAAATGCAACGACCGCATGAAGGCTATCG
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CGAGGGACTTAACTATGACGCCGCCGATAT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT

>CP033388|2|1|2637936-2638762|CRT
ATTTTGTCTTGAATCCAAAATAAGGCACAGTACAAT	GTTCTTTCCGAACAGGGCGACGGGGGAACA
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	AGTTATTGGCAAACGCCGTAGCGTTCGTTT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CCAGCGCTTTGCTCGCTGCTACAGCCCCTA
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	AGCCAAAAGCGATCCTTACCTATAGTTTT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	TTGAATAATTACACCACTCTACAAAAGTAT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CAGGCGAGTTAATGGCCTGACGCTCGCATT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	ATGCAGGTTACTCTCATTTTGGAACGGTAG
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CCGCCAAGCACCTTAAGTCTATATATGACT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	ACGGCCTAATATGGAAGGGCAATCGGCTTT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CAGGCGAGTTAATGGCCTGACGCTCGCATT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CAAAATGCAACGACCGCATGAAGGCTATCG
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CGAGGGACTTAACTATGACGCCGCCGATAT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT

>CP033388|2|1|2638068-2638498|PILER-CR
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CCAGCGCTTTGCTCGCTGCTACAGCCCCTA
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	AGCCAAAAGCGATCCTTACCTATAGTTTT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	TTGAATAATTACACCACTCTACAAAAGTAT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CAGGCGAGTTAATGGCCTGACGCTCGCATT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	ATGCAGGTTACTCTCATTTTGGAACGGTAG
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT	CCGCCAAGCACCTTAAGTCTATATATGACT
GTTTTGCCTTGAATCCAAAATAAGGCACAGTACAAT

Protein	Signature genes	Signature genes Name	Protein_function
CP033388.1\|QAT92842.1\|2644961_2645402_+\|Rrf2-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|273242
CP033388.1\|QAT92505.1\|2628546_2629572_-\|phenylalanine--tRNA-ligase-subunit-alpha	unknown	unknown	gnl\|CDD\|234780
CP033388.1\|QAT92508.1\|2633163_2635005_+\|molecular-chaperone-HtpG	unknown	unknown	gnl\|CDD\|235366
CP033388.1\|QAT92503.1\|2624923_2625946_-\|DUF4105-domain-containing-protein	unknown	unknown	gnl\|CDD\|379156
CP033388.1\|QAT92506.1\|2629738_2630923_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|225365
CP033388.1\|QAT92510.1\|2635970_2636600_-\|PEP-CTERM-sorting-domain-containing-protein	unknown	unknown	gnl\|CDD\|131644
CP033388.1\|QAT92515.1\|2643762_2644869_+\|alanine-racemase	unknown	unknown	gnl\|CDD\|143481
CP033388.1\|QAT92516.1\|2645536_2646823_+\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	unknown	unknown	gnl\|CDD\|225428
CP033388.1\|QAT92504.1\|2626006_2628526_-\|phenylalanine--tRNA-ligase-subunit-beta	unknown	unknown	gnl\|CDD\|234804
CP033388.1\|QAT92511.1\|2636793_2637864_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271177
CP033388.1\|QAT92509.1\|2635089_2635917_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369572
CP033388.1\|QAT92513.1\|2639122_2640058_-\|type-II-CRISPR-associated-endonuclease-Cas1	cas1	cd09720_cas1_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|274694
CP033388.1\|QAT92518.1\|2647807_2648422_+\|thiamine-phosphate-synthase	unknown	unknown	gnl\|CDD\|234590
CP033388.1\|QAT92512.1\|2638823_2639135_-\|CRISPR-associated-endonuclease-Cas2	cas2	COG3512_cas2_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|226043
CP033388.1\|QAT92502.1\|2624340_2624934_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379247
CP033388.1\|QAT92519.1\|2649572_2650058_+\|DUF4065-domain-containing-protein	unknown	unknown	gnl\|CDD\|226128
CP033388.1\|QAT92843.1\|2648469_2649285_+\|hydroxyethylthiazole-kinase	unknown	unknown	gnl\|CDD\|236477
CP033388.1\|QAT92517.1\|2646859_2647789_+\|cysteine-synthase-A	unknown	unknown	gnl\|CDD\|273463
CP033388.1\|QAT92507.1\|2631120_2632992_-\|PRTRC-system-protein-C	unknown	unknown	gnl\|CDD\|379166
CP033388.1\|QAT92514.1\|2640068_2643398_-\|hypothetical-protein	cas9	cd09643_cas9_CAS-II-A:CAS-II-B:CAS-II-C	gnl\|CDD\|379160

Protein	Function_ID	Function_description	E-value
CP033388.1\|QAT92842.1\|2644961_2645402_+\|Rrf2-family-transcriptional-regulator	gnl\|CDD\|273242	TIGR00738, Putative_HTH-type_transcriptional_regulator, Rrf2 family protein. This model represents a superfamily of probable transcriptional regulators. One member, RRF2 of Desulfovibrio vulgaris is an apparent regulatory protein experimentally (MEDLINE:97293189). The N-terminal region appears related to the DNA-binding biotin repressor region of the BirA bifunctional according to results after three rounds of PSI-BLAST with a fairly high stringency. [Unknown function, General].	2.99251e-42
CP033388.1\|QAT92505.1\|2628546_2629572_-\|phenylalanine--tRNA-ligase-subunit-alpha	gnl\|CDD\|234780	PRK00488, pheS, phenylalanyl-tRNA synthetase subunit alpha; Validated.	0
CP033388.1\|QAT92508.1\|2633163_2635005_+\|molecular-chaperone-HtpG	gnl\|CDD\|235366	PRK05218, PRK05218, heat shock protein 90; Provisional.	0
CP033388.1\|QAT92503.1\|2624923_2625946_-\|DUF4105-domain-containing-protein	gnl\|CDD\|379156	pfam13387, DUF4105, Domain of unknown function (DUF4105). This is a family of uncharacterized bacterial proteins. There is a highly conserved histidine residue and a well-conserved NCT motif.	1.71804e-25
CP033388.1\|QAT92506.1\|2629738_2630923_-\|MFS-transporter	gnl\|CDD\|225365	COG2807, CynX, Cyanate permease [Inorganic ion transport and metabolism].	6.39163e-70
CP033388.1\|QAT92510.1\|2635970_2636600_-\|PEP-CTERM-sorting-domain-containing-protein	gnl\|CDD\|131644	TIGR02595, conserved_hypothetical_protein, PEP-CTERM protein-sorting domain. This model describes a 25-residue domain that includes a near-invariant Pro-Glu-Pro (PEP) motif, a thirteen residue strongly hydrophobic sequence likely to span the membrane, and a five-residue strongly basic motif that often contains four Arg residues. In nearly every case, this motif is found within nine residues, and usually within five residues, of the extreme C-terminus of the protein. Proteins with this motif typically have signal sequences at the N-terminus. This region appears many times per genome or not at all, and co-occurs in genomes with a proposed protein-sorting integral membrane protein we designate exosortase (see TIGR02602). PEP-CTERM proteins frequently are poorly conserved, Ser/Thr-rich proteins and may become extensively modified proteinaceous constituents of extracellular material in bacterial biofilms. [Cell envelope, Surface structures].	0.0024809
CP033388.1\|QAT92515.1\|2643762_2644869_+\|alanine-racemase	gnl\|CDD\|143481	cd00430, PLPDE_III_AR, Type III Pyridoxal 5-phosphate (PLP)-Dependent Enzyme Alanine Racemase. This family includes predominantly bacterial alanine racemases (AR), some serine racemases (SerRac), and putative bifunctional enzymes containing N-terminal UDP-N-acetylmuramoyl-tripeptide:D-alanyl-D-alanine ligase (murF) and C-terminal AR domains. These proteins are fold type III PLP-dependent enzymes that play essential roles in peptidoglycan biosynthesis. AR catalyzes the interconversion between L- and D-alanine, which is an essential component of the peptidoglycan layer of bacterial cell walls. SerRac converts L-serine into its D-enantiomer (D-serine) for peptidoglycan synthesis. murF catalyzes the addition of D-Ala-D-Ala to UDPMurNAc-tripeptide, the final step in the synthesis of the cytoplasmic precursor of bacterial cell wall peptidoglycan. Members of this family contain an N-terminal PLP-binding TIM-barrel domain and a C-terminal beta-sandwich domain. They exist as homodimers with active sites that lie at the interface between the TIM barrel domain of one subunit and the beta-sandwich domain of the other subunit. AR and other members of this family require dimer formation and the presence of the PLP cofactor for catalytic activity. Fungal ARs and eukaryotic serine racemases, which are fold types I and II PLP-dependent enzymes respectively, are excluded from this family.	2.8397e-157
CP033388.1\|QAT92516.1\|2645536_2646823_+\|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase	gnl\|CDD\|225428	COG2873, MET17, O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism].	0
CP033388.1\|QAT92504.1\|2626006_2628526_-\|phenylalanine--tRNA-ligase-subunit-beta	gnl\|CDD\|234804	PRK00629, pheT, phenylalanyl-tRNA synthetase subunit beta; Reviewed.	0
CP033388.1\|QAT92511.1\|2636793_2637864_+\|hypothetical-protein	gnl\|CDD\|271177	cd00796, INT_Rci_Hp1_C, Shufflon-specific DNA recombinase Rci and Bacteriophage Hp1_like integrase, C-terminal catalytic domain. Rci protein is a tyrosine recombinase specifically involved in Shufflon type of DNA rearrangement in bacteria. The shufflon of plasmid R64 consists of four invertible DNA segments which are separated and flanked by seven 19-bp repeat sequences. RCI recombinase facilitates the site-specific recombination between any inverted repeats results in an inversion of the DNA segment(s) either independently or in groups. HP1 integrase promotes site-specific recombination of the HP1 genome into that of Haemophilus influenza. Bacteriophage Hp1_like integrases are tyrosine based site specific recombinases. They belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism is essentially identical and involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.40815e-17
CP033388.1\|QAT92509.1\|2635089_2635917_+\|hypothetical-protein	gnl\|CDD\|369572	pfam07885, Ion_trans_2, Ion channel. This family includes the two membrane helix type ion channels found in bacteria.	7.54772e-13
CP033388.1\|QAT92513.1\|2639122_2640058_-\|type-II-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274694	TIGR03639, cas1_NMENI, CRISPR-associated endonuclease Cas1, subtype II/NMENI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is a prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 variant of the NMENI subtype of CRISPR/Cas system.	3.42435e-46
CP033388.1\|QAT92518.1\|2647807_2648422_+\|thiamine-phosphate-synthase	gnl\|CDD\|234590	PRK00043, thiE, thiamine phosphate synthase.	3.31757e-79
CP033388.1\|QAT92512.1\|2638823_2639135_-\|CRISPR-associated-endonuclease-Cas2	gnl\|CDD\|226043	COG3512, COG3512, CRISPR-associated protein, Cas2 homolog [Defense mechanisms].	2.52546e-27
CP033388.1\|QAT92502.1\|2624340_2624934_+\|hypothetical-protein	gnl\|CDD\|379247	pfam13539, Peptidase_M15_4, D-alanyl-D-alanine carboxypeptidase. This family resembles VanY, pfam02557, which is part of the peptidase M15 family.	0.00444159
CP033388.1\|QAT92519.1\|2649572_2650058_+\|DUF4065-domain-containing-protein	gnl\|CDD\|226128	COG3600, GepA, Uncharacterized phage-associated protein [Function unknown].	4.3812e-19
CP033388.1\|QAT92843.1\|2648469_2649285_+\|hydroxyethylthiazole-kinase	gnl\|CDD\|236477	PRK09355, PRK09355, hydroxyethylthiazole kinase; Validated.	2.92118e-101
CP033388.1\|QAT92517.1\|2646859_2647789_+\|cysteine-synthase-A	gnl\|CDD\|273463	TIGR01136, Cysteine_synthase, cysteine synthase. This model discriminates cysteine synthases (EC 2.5.1.47) (both CysK and CysM) from cystathionine beta-synthase, a protein found primarily in eukaryotes and carrying a C-terminal CBS domain lacking from this protein. Bacterial proteins lacking the CBS domain but otherwise showing resemblamnce to cystathionine beta-synthases and considerable phylogenetic distance from known cysteine synthases were excluded from the seed and score below the trusted cutoff. [Amino acid biosynthesis, Serine family].	3.01928e-168
CP033388.1\|QAT92507.1\|2631120_2632992_-\|PRTRC-system-protein-C	gnl\|CDD\|379166	pfam13402, Peptidase_M60, Peptidase M60, enhancin and enhancin-like. This family of peptidases contains a zinc metallopeptidase motif (HEXXHX(8,28)E) and possesses mucinase activity. It includes the viral enhancins as well as enhancin-like peptidases from bacterial species. Enhancins are a class of metalloproteases found in some baculoviruses that enhance viral infection by degrading the peritrophic membrane (PM) of the insect midgut. Bacterial enhancins are found to be cytotoxic when compared to viral enhancin, however, suggesting that the bacterial enhancins do not enhance infection in the same way as viral enhancin. Bacterial enhancins may have evolved a distinct biochemical function. These bacterial domains are peptidases targetting host glycoproteins and thus probably play an important role in successful colonisation of both vertebrate mucosal surfaces and the invertebrate digestive tract by both mutualistic and pathogenic microbes. This family has been augmented by a merge with the sequences in the Enhancin Pfam family.	2.62364e-91
CP033388.1\|QAT92514.1\|2640068_2643398_-\|hypothetical-protein	gnl\|CDD\|379160	pfam13395, HNH_4, HNH endonuclease. This HNH nuclease domain is found in CRISPR-related proteins.	8.85706e-15

>CP033388.1|QAT92511.1|2636793_2637864_+|hypothetical-protein
MNIPTSSFLTDTDQTGILLIRSLGIPPMDAFLLLKDLLDTSRGRGDRITRAKRCIRLGGEALADRETSVPFSQAVRASLEARKHRRPRTLQEIRYMAARMMKKCPELTRKQVRSITPEDCERYLRKSFSTPRQRHKGRLILSGILNFSLKRGWCRRNAAFLVPPPILREKRIRALSLYEAKRLLHTAEQLFHGACLPACALMLYAGIRPHEVKRLTWKNINLKSGLVSLAPSHTKTGGSRHVSILPVLGAILSRTSSAGSPSRPVCPPNWEKKWREVRRRSGILKKSGWVQDVLRHTYASYHLAHFCNQNLLQKEMGHSSPSLLLARYLNMDGITSATGAMFWTYSFIPPAPLKKD
>CP033388.1|QAT92510.1|2635970_2636600_-|PEP-CTERM-sorting-domain-containing-protein
MEQYFKNLLGKMAKTALLSVFLHFGFLGGVCRASEIYIEKSIWNDDQAVYEDIDGTVMNNDSDWYLKGCNTIYLGNHYNGTSGYHPRLSLVNLTLHAELGERNLSEAVLSFNFFGQYTVLMEWQEIKWDITASADLKPGRYLLFTTTKSTVVSVLHVVNWKNPHVEAEEYGNGMVSIYYNHLGSLVPEPGAAGLSLLGITAALWRRRRE
>CP033388.1|QAT92509.1|2635089_2635917_+|hypothetical-protein
MNALRRMPRHILFLRLAYQAGMCLLALVAVTLTAIDLTTEAAEWEVTADRVIYWIFVLDYVVRFSISRSKWLFIKEHPWDLLAIIPFDALFRLFRFASLGEILRLARYLDLFSYAMRFTTRIRRFFNTNGFKYICIAALVIILLGAVGIHLAEGMSLPNGIWWSFVTATTVGYGDTYPVTTSGKFLAVFLMLTGIGFVGTLTSTITSFFLSPHGGEALPYREEEIEDIKKKLDDLSSMTDEDIDTMAALLKTLRDAPHSPTEAEKKTSPPGSSTT
>CP033388.1|QAT92508.1|2633163_2635005_+|molecular-chaperone-HtpG
MNTETHQFQAEVRQLLDIVINALYSDREIFVRELVSNASDALEKLRLKQLTDSNIYQPDKPLEITVTTDKENKTITIADTGIGMTEADLVENLGTIAHSGTKKFMEALKQKQEGGADLIGQFGVGFYSSFMVADRVEVFTHSYEPEAASLRWSSDGREGYSIETLAEPLDRGTRIVIRLKDEYEEFSQEYRVKELLRRYSNFVGFPLNFNGEHVNTVQAIWSKSKSDVKPEEYDEFYQFIAHTDEKPLSYMHFSADAPIALNALLFIPRRNPEMFGFGRVDANVALYCKRVLIDAKPEGLLPEWLRFLNGVVDSEDLPLNISREMLQDNSLVRKISDIITKRFIKHLEKLAKDDQETYREFYAQFSRYLKEGVVTSWPNKESLGKLLRFESTATEPGETTSFEDYVTRMKEGQTAIYALTGPSRSHLENSPYLEAFKARGYEVAFFTDHGDEFVLDSLSSVDGKPVTMIDRADVELPALEEEQKDALPQEEAAALEEWLKGLYPDKFSKVTLGKRLVSGAAVALQSGNDMGPEMRAYMKAMGQEVPESHPQLELNPSNPLVKKLSALRTENPELAQMVADQIANTALLRAGMLDDPAVLAQSSQALMEQLLLK
>CP033388.1|QAT92507.1|2631120_2632992_-|PRTRC-system-protein-C
MIFSPLLKKGILLLALCGVLGGGVLSAQETGGAPITEEGLKALDSNVFANEYMLALKPNVTRDRIARIKDPFVRGLAEQMAEKKFDRKARALTAEPYEPVKDLAERLRTSQYSKFENPTGIFFEEGEDVLLVMGDSKGEKLNLVIHNFGRDGGHSSYPLKEGVNIIRAKNKGLGYIEYFTPNYKKAPKVHLSILSGKVNGVFVGGVSKNSDWKRMLENSPTEVVDIVGNRVHLVYPVEELKQFCPDKGEELIALYDRIIGMEQRIMGLYKYRMLPKNRMFGRVIWNGFMHADGTGAAFHNGTMKEVGNPDKIPGSAWGIAHEFGHVNQVRPAMKWVSTGEVTNNIYSAYVNYMLNPSSMRLEHERINGGDGNMIGGRFNAYLNNGILKGENWLVQSGPDKRSGGDNRPMVHDHFVKLAPLWQLELYFKVAGKGNPDFYPDIFYKAIKMDTRGKKDGELQLAFMKNACDAARQDLTDFFRKTGMLKPIDQELDDYTCARMTITEADCKNLIAYARKYKKPESPVIYYISVNSAETYKNRLPVRGVYNQGVTEQGNRRIISHDVWKNAVVFETYKDREMVRITMAGTDSRDNSSTTVPYPEGSTRIEAVSWDGRRTLVYGKRPSK
>CP033388.1|QAT92506.1|2629738_2630923_-|MFS-transporter
MDKAGTSGGIRGKMLLFAAFLIVCFNLRTGFDSPDPLLGTIERDMGLSLENSGLFALLPVFVLGVAAPISPRVARRMTPWKIIFWFQLLAVAGILWRSWDGVAGLYGGMVLMGLGMGIAGAAIPGLIKHQFPDRASVMMGVYSAMIGVGSAAASGLSVPLSNMLGGWRFGLGIWIIPILLGMLVWGAYFLRHPDGVFQNDPAASGRSLLRSGKAWQVTVFYLSRVGAAYFFYTWIPIFLRQRGMSYEDAGFILSVAMFAQLPATLSAHVLEKAMGGRGLLIVMAMALAALSCWGILYLPLDWAVWMAVLFGLATGTVFSRGMALMVERARTPSESIRLSGMSQGIGFTMGALLSLLFTSFLHQGGSFLPFCLVYTFFCVLGMVSGRMSARPGYV
>CP033388.1|QAT92505.1|2628546_2629572_-|phenylalanine--tRNA-ligase-subunit-alpha
MKEEIVRIQRDALERIAQASDRRGVEDARVAILGKKGELTLAQTGMKDVPREEKPAVGQLLNEARKAITEALDAKLEEVQALADKAAVAGVDLTLPARSLPSGGLHPLTIVRDEAVRILRHMGFALADGPEIEDEFHCFDALNTPEDHPARNEKDTFYFDSGKLLRTHTSSVQIRSMEKQMPPVRVIAPGSAYRRDEIDATHLSAFNQLEGLYVDTDVSVGDLKGTLEYFLRALFGSGTEVRFRPHFFPFTEPSFEIDVKLKVDGQAPRWVEIAGCGMVDPNVFEAVDRELGLDPRSQARYTGLTGFAFGIGLDRLAMIRWGIRDIRALIENDVRFLAQFQ
>CP033388.1|QAT92504.1|2626006_2628526_-|phenylalanine--tRNA-ligase-subunit-beta
MKISLNWLSQYIDLSGLSVDEMSDMLTFAGIEVEDIRQQGVDSPYVVVARVAAAEQHPQADRLKVCQVDVGDGTLHQIVCGAQNYKVGDKVPCALPGAVLPGNFEIKVGKLRGVESRGMLCSASELGLPDKEHGLWILPQELEPGTPISQVVKADTLVEVEVTPNRPDLLSHNGMAYELAAISGREYRPVSIDDAGVELEPAGDFVRLDQPELNPYYTAVKISGVNVQESPEWLKERLVAVGLRPINNIVDITNFVLHELGTPLHAFDAAKVQGGIVTRTAYEGETFKALDGQEYTLNCTDLVVADQSGKALAIGGVMGGEESGVTDATTDIILESAWFKPSSVRATSRRLALSSDSSYRFERGTSAWNVLRGSVRAVELILQLAGGTASPTYVAGSPVPNPAHASMPSCGGADGPVSVPASLKQGKGATVTNELGFVKLPWKALDQMSGGSISHEEGARILTALGLKQVPESPECWLIPPHRLDLTRPCDLLEEIVRVFGLDGIPSRFSGPFVAESPVDAAYNFQMELRRKLAALGFYETQTIKLIASESADGAIAQVKDALPLRPLQDGDLIRVSLPLSEDHSVLRPAHTPGLIAAAVRNSNQGVSGLRFFELGRVFRNTGGGKGRDIETDTLGILVSGDRTARSWADPKPEQASFEDLLAVMAALAPGHRFTLTPAKPREQAALGADVQLDGKACGYFARLSLARCRELGLGQPVYVAELDLRKMQEILTAPVKAAELPQFPGSSRDAAMELPLSTPNADIVKAVESAREKLLVSYSCFDVFTDPSGEKLPADRKSIAYTFLYRDPAKTLTAAEVDAAHQRVLKALTDKVKGLSFR
>CP033388.1|QAT92503.1|2624923_2625946_-|DUF4105-domain-containing-protein
MHLTFLRHAGLAAARILMMAAWFGLSVWAAGVVFYNVWGGPVLVWLYVAAMACAFALRRKRPVLWRASWGVPALLLAYYLCIPATNDKEWQPSWSRLPSVEINGNEIVVKDVRSFIYRTERDFDARYVTRRFDLDKLATLDFAVSHWDGMEFVAHTMLSFGFEDGKHLALSVETRLPEGVEQGSVPGLYKQFNVIYILADEEDLFALRTNYRKEDMYLYRINIDRENLKKAFLGFAEKINSLHERPRYYHTVTANCTTELVDTFKNYLGVRRWQWTPVFNGMCDQNAYDRGELLHLPGESFRELKKRSFMGHGGNGEDWPALRRRWEEGWRTFASAPVKE
>CP033388.1|QAT92502.1|2624340_2624934_+|hypothetical-protein
MKKYWKLIQQHLGVDADGIPGPKTALALLEKLDIRQPEHSWPSQEEVRSGKSVFGRAGDESNMTSIKLPYVMRLAWETNTTVSTMRCHKLVAEPLVRIFQAALDHYGMEKIRELGLDLYGGCFNNRSIIGGKATSMHAWGIAVDMDPDRNGLNVSAPKAVLSGPEYTAFWQFVEAEGAVSLGRSRDYDWMHFQFATL
>CP033388.1|QAT92512.1|2638823_2639135_-|CRISPR-associated-endonuclease-Cas2
MGWLVVFFDLPTTTPEDKKNYQYFRKALLEDGYTMIQYSVYARACVTQERIATHSRRIQKMIPPDGSVRCLFVTNIQWDKMFVFHGRSCPRQEVSLPQQMLLW
>CP033388.1|QAT92513.1|2639122_2640058_-|type-II-CRISPR-associated-endonuclease-Cas1
MSYHILSIDAYTCHLSCDKGQLRCADGENSPRTIPLEDVGAVVLSSFKATLTSNLLIELARKRIGFVLCESYRPAVLLLPADRSTDTGLLRHLADMPARLRNRLWQKTLDAKCGNQTALAQAWNPHHPAIAELKRMAVTEKTAREAECARLFWSVFADTWANSDFRRGRHEEGFNNLFNYAYAILLSCILQYLFALGLDPCFGIFHQSREHAAPLAYDLMEPFRPAFDANVARWIHLCLQEGKTEERAGEITREFRQHITATLQASVMHQNKQMPLKAAVEAVCRSFRKAVLAGQSGPYEPWHMTTIKWAG
>CP033388.1|QAT92514.1|2640068_2643398_-|hypothetical-protein
MSRSLTFSFDIGYASIGWAVIESASHDDADPSVCGCGAVVFPKDDCQAFKRREYRRLRRNIRSRRVRIERIGRLLVQAQIITQEMKETPGHPAPFYLASEALKGHRNLAPIELWHVLRWYAHNRGYDNNVSWSGGFSEDGGNKEDTERVQHAKDLMDKHGTATMAETICRELKLEEGKADAPMNVSTPAYKNLNTAFPRLTVEKEVRRILELSAPLIPGLTSEIMELIAQHHPLTTKQRGVLIHYGIKLARRYRGSLLFGQLIPRFDNRIISRCPVSWAQVYEAELKKGNSEQNARERAEKLSKVPTANCPEFYEYRMARILCNIRADGEPLSAEIRRELMNQARQEGKLTKASLEKAISSRLGETETNVANYFTLHPDSEEALYLDPAVEVLKRSGIGETLSPSVCRLAANRLRRGKSVTPNYLLNLLKSRGESVEALEKKIEKERHQQANRKKAKKTDPDYAATPLKPRYATGRAPYARPVLKKVVEETLDGEDPTRPARGEAHPDGELKAHDGCLYCLLDTDSSVNQHQKERRLDTMTNNHLVRHRMLILDRLLKDLIQDFAGGQKDRISRICVEVGKELTAFSGMDSKKIQTELNLRQKSHTEAVNRLKRDLPGKALSANLIRKCRIAMDMNWTCPFTGATYGTHELENLELEHIVPHSFRQSNALSSLVLTWPGVNRMKGQRTGYDFVEQEQENPVPDKPNLHICSLNNYRELVEKLDDKKGHEDDRRRKKKRKALLMVRGLSHKHQSQNHEAMKEIGMTEGMMTQSSHLMKLACKSIKTSLPDAHIDMIPGAVTAEVRKAWDVFGVFKELCPEAADPDSGKILKENLRSLTHLHHALDACVLGLIPDIIPAHHNGLLRRVLAMRRIPEKLIPQVRPVANQRHYVLNDDGRMMLRDLSASLKENIREQLMEQRVIQHVPADMGGALLKETMQRVLSVDGSGEDAMVSLSKKKDGKKEKNQVKASKLVGVFPEGPSKLKALKAAIEIDGNYGVALDPKPVVIRHIKVFKRIMALKEQNGGKPVRILKKGMLIHLTSSKDPKHAGVWRIESIQDSKGGVKLDLQRAHCAVPKNKTHECNWREVDLISLLKKYQMKRYPTSYTGTPR
>CP033388.1|QAT92515.1|2643762_2644869_+|alanine-racemase
MPATSPPRAWAEIDLGAIRHNLNVVKQAAKGEYYMPVVKAGAYGHGLEQVCRTLDSEGIAFFGVANVGEARRISQAGCRTRPYILGPAFPEEREEIVLNGWRSFISTMEEAEHYNSLARLYGKTLPIHLSVDTGMGRGGFLPDQLEELLSRLGELDSLHPEGLGAHLPCADEDREITLRQIALFERMAARIREKLPLKYCHLANSAASLDYEIPSNNMCRPGLVLYGFSPIDSPWASQLRPAMALFSRLTVVRTLPEGHGISYGGTYVTDHPTRVATVGIGYADGYLRSLAHKGARVMVDGVSCPLLGRVTMDQIIVDVSRAPHAEPGMTAEIMGPNIPVTELAEKAGTISWEIFTGIGPRVPRHYNY
>CP033388.1|QAT92842.1|2644961_2645402_+|Rrf2-family-transcriptional-regulator
MKVSTRGRYALRLMIDLAHHRNEGYVSLKEISARQDITVRYLEQIIAILLKAGFVQSFRGKAGGYRLSRHPREYTTEEILKLTEGSLLPISCTAPHENPCPRAAGCATLPFWRGLQQVIENYLRRVTLEDLAEQQKEIGCDYGAGI
>CP033388.1|QAT92516.1|2645536_2646823_+|O-acetylhomoserine-aminocarboxypropyltransferase/cysteine-synthase
MSKNHRFETRQIHVGQESPDPATDARAVPIYATTSYVFKDSEQAAARFALAEPGNIYNRLMNPTADVFEQRIASLEGGAAALAVSTGAAAVTYAIQNIARAGDHIVSSSTVYGGTYNLFANTLADAGIETTFVDARDVQNFSRAIRNNTKALYVESLGNPNCDIVDMEALAEVAHAHGIPLIVDSTFATPFLFRPLEHGADIVVHSATKFIGGHGTVMGGVIVDGGKFDWTQNDKFPGISKPNPNYHGAVFAEVCGNLAYIVKIRATLLRDTGATISPFNSFLLLQGLETLSLRVERHVQNALRVADYLSSHPQVEKVNHPSLPDHPNHDLYKRYYPNGGGSIFTFEIKGGAEKARKFCESLELFSLLANVADVKSLVIHPASTTHSQMTEEELKAGGITPSTVRLSIGTEHIDDILEDLEQGFRAIL
>CP033388.1|QAT92517.1|2646859_2647789_+|cysteine-synthase-A
MRIYKNITELIGGTPLLELTNYERRNGLNATILAKLEYLNPAGSVKDRIAQAMIDAAEAAGKLKPDSVIIEPTSGNTGIGLAAVAASRGYRIILTMPETMSVERRNLLKAYGAELVLTDGALGMKGAIAKAEELAAGLPNSFIPGQFANPANPEAHFRTTGPEIWNDTEGKADIFVAGVGTGGTITGVGKYLKSRNPGIRVVAVEPFSSPVLTQGTAGPHKIQGIGAGFVPETLDTSVYDEVITVTNEDAFSTGKELARTDGVLTGISSGAALWAATQVARRPENEGKTIVVLLPDTGDRYLSTPLFTD
>CP033388.1|QAT92518.1|2647807_2648422_+|thiamine-phosphate-synthase
MKKFNLHLYLVTDEASKCRYSLLETVRKAADGGVTMVQYRSTNPDAGTCYREALPIRDFLASRGIPFIVNNRIDLALALEADGVHIGQRDLPVPSVRAMIGPDKILGLSVSNKEQLRAVDASLVDYLGMGPVFPTISKLNAPPVLSVEGFAALASQSPLPVVAIGGLDAERARQVRATGTASGIAVVSAICGAENPEAAARALA
>CP033388.1|QAT92843.1|2648469_2649285_+|hydroxyethylthiazole-kinase
MLSPTDLVQAVAADLEKIRETAPLVLSLTNSVVQPLTANLLLAIGAVPAMLNDAEEAADMLRSGTGALLVNLGTVTREQGAAMQTAVREANRLNIPWVLDPVAVGALSLRTRLAGQLKEQSPRIIRGNASEIMALAGYSSVTKGPESTSSSADALHAARELALHTGAAVLVTGRTDYSTDGRQVTATENGHAMMSRVTGVGCSMGALSAACAAVSPTPLQAAVSTAVLMGIAGEMAFEQSPFPGSFAVSLLDSLYALSPEDVVRRARFLSL
>CP033388.1|QAT92519.1|2649572_2650058_+|DUF4065-domain-containing-protein
MEATHFSMANSTTTQKLCNWFIQQANAKGLVLTPVKLNHLVILADWWHLHRTGGFLINERVEAWPSGPVLPSIYHEYKDQPPYSSIEHPSRRQPPLEEETDIIPFLEHIWNVYGKYTAQQLGRINTAPSSPWKQSQGRHEQAHRQQITEEHVQAYFKSLAG

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Crispr_ID: CP033388_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033388_3

2706861-2707095

Orphan

Consensus_repeat	Method
TGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACATAC	PILER-CR
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CRISPRCasFinder
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CRT

3 spacers

The CRISPR arrays of CP033388_3

>merge|CP033388|3|2706861-2707095|PILER-CR,CRISPRCasFinder,CRT
TTTTCAATCCACGCACTCCTTGCGGAGTGCGACAAACGGGAGGGGAAATAACATGGACGCGTTGCTGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACATTTACGGTGTAATCGGAATCCCCGGAATCCGTTGTTTCAATCCACGCACTCCTTGCGGAGTGCGACCTACTTTTTAGTTGGTCCGGAAAGTGAGGAACCGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACT

>CP033388|3|2|2706861-2707031|PILER-CR
TTTTCAATCCACGCACTCCTTGCGGAGTGCGACAAACGG	GAGGGGAAATAACATGGACGCGTTGCTG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGACATTTAC	GGTGTAATCGGAATCCCCGGAATCCGTT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGACCTAC

>CP033388|3|3|2706861-2707095|CRISPRCasFinder
TTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AAACGGGAGGGGAAATAACATGGACGCGTTGCTG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	ATTTACGGTGTAATCGGAATCCCCGGAATCCGTT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CTACTTTTTAGTTGGTCCGGAAAGTGAGGAACCG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGACT

>CP033388|3|2|2706861-2707094|CRT
TTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	AAACGGGAGGGGAAATAACATGGACGCGTTGCTG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	ATTTACGGTGTAATCGGAATCCCCGGAATCCGTT
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CTACTTTTTAGTTGGTCCGGAAAGTGAGGAACCG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC

Protein	Signature genes	Signature genes Name	Protein_function
CP033388.1\|QAT92569.1\|2709896_2713520_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143443
CP033388.1\|QAT92567.1\|2706538_2706796_+\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92571.1\|2714673_2715123_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224760
CP033388.1\|QAT92564.1\|2705046_2705262_-\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92577.1\|2721801_2722023_+\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92562.1\|2703125_2703407_-\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92576.1\|2721141_2721717_-\|rubrerythrin-family-protein	unknown	unknown	gnl\|CDD\|153100
CP033388.1\|QAT92558.1\|2699928_2700273_-\|rubrerythrin	unknown	unknown	gnl\|CDD\|275328
CP033388.1\|QAT92563.1\|2703403_2705038_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378829
CP033388.1\|QAT92570.1\|2713678_2714674_-\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92561.1\|2702251_2703133_-\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92566.1\|2706248_2706542_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367747
CP033388.1\|QAT92565.1\|2705577_2706198_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222807
CP033388.1\|QAT92568.1\|2709550_2709748_-\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92575.1\|2718399_2721099_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274447
CP033388.1\|QAT92573.1\|2715647_2717903_+\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
CP033388.1\|QAT92559.1\|2700554_2700899_-\|rubrerythrin	unknown	unknown	gnl\|CDD\|275328
CP033388.1\|QAT92572.1\|2715243_2715513_+\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92560.1\|2701079_2701583_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379034
CP033388.1\|QAT92574.1\|2718203_2718407_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP033388.1\|QAT92569.1\|2709896_2713520_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143443	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.	0
CP033388.1\|QAT92566.1\|2706248_2706542_+\|hypothetical-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.33159e-06
CP033388.1\|QAT92571.1\|2714673_2715123_-\|KH-domain-containing-protein	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	4.02466e-30
CP033388.1\|QAT92565.1\|2705577_2706198_+\|hypothetical-protein	gnl\|CDD\|222807	PHA00662, PHA00662, hypothetical protein.	9.5243e-22
CP033388.1\|QAT92558.1\|2699928_2700273_-\|rubrerythrin	gnl\|CDD\|275328	TIGR04535, conserved_hypothetical_protein, ferritin-like protein. Two families of proteins are known to be encoded, with some regularity, next to the gene for encapsulin (pfam04454), with surrounds the target protein to form a prokaryotic proteinaceous organelle. One is the family of enzymes that includes Dyp-type peroxidases. The other is this family, with a resemblance to bacterioferritins. Encapsulin-associated forms of the proteins in these two families have a necessary C-terminal motif that resembles DGSL[SGN]IGSL[KR]. Members of this family that include the last columns of the model in the hit region (and are encoded next to the encapsulin gene) should be designated encapsulin-associated ferritin-like protein.	1.76902e-18
CP033388.1\|QAT92573.1\|2715647_2717903_+\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
CP033388.1\|QAT92559.1\|2700554_2700899_-\|rubrerythrin	gnl\|CDD\|275328	TIGR04535, conserved_hypothetical_protein, ferritin-like protein. Two families of proteins are known to be encoded, with some regularity, next to the gene for encapsulin (pfam04454), with surrounds the target protein to form a prokaryotic proteinaceous organelle. One is the family of enzymes that includes Dyp-type peroxidases. The other is this family, with a resemblance to bacterioferritins. Encapsulin-associated forms of the proteins in these two families have a necessary C-terminal motif that resembles DGSL[SGN]IGSL[KR]. Members of this family that include the last columns of the model in the hit region (and are encoded next to the encapsulin gene) should be designated encapsulin-associated ferritin-like protein.	5.35331e-17
CP033388.1\|QAT92575.1\|2718399_2721099_-\|hypothetical-protein	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	1.0358e-35
CP033388.1\|QAT92576.1\|2721141_2721717_-\|rubrerythrin-family-protein	gnl\|CDD\|153100	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.	9.03876e-56
CP033388.1\|QAT92560.1\|2701079_2701583_-\|thioredoxin-family-protein	gnl\|CDD\|379034	pfam13098, Thioredoxin_2, Thioredoxin-like domain.	1.41074e-13
CP033388.1\|QAT92563.1\|2703403_2705038_-\|hypothetical-protein	gnl\|CDD\|378829	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein. This family of head-tail connector proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. This protein is found in Phage T7 and T3 among others.	1.02856e-155

>CP033388.1|QAT92567.1|2706538_2706796_+|hypothetical-protein
MKNPLLSTEEKRRWLARVFRDEDGEYSQADKFKALVEDTKLAALQQEEEEFKRQREMGAAPQDPILALLQSLPPAELNLNNHPSS
>CP033388.1|QAT92566.1|2706248_2706542_+|hypothetical-protein
MKALDFIQIFASNVRRLDFRLSSAQVILAVIAGYRRHSTITEATRLHPNTVTNILQDLIAQGYVNRIGDGRPYVYRPTADGEQLAGNLLDKNTFPGT
>CP033388.1|QAT92565.1|2705577_2706198_+|hypothetical-protein
MINESLLQPDTPSALDICNAALSKIGEAPLDALIANESTASRLCVLHYHPARRETLCMARWTFAATQTTLDSVSAQAPNSLTPYQFTLPADCLRVLDVECSEWKMQGRRIHASCAPLPLSYIADIENADQFDPLFMDALATRLAEKLAMPLTGNQSLRQNLNQEFHKIILPQAATVNAVQCFSNDSHPLLDLLRKIKSPSCPEECE
>CP033388.1|QAT92564.1|2705046_2705262_-|hypothetical-protein
MGFMKPSTPSASAPEQTIPVKAESVEQEVGEDYQARERQRQGMISTILARRHSSAGQGEVNPRTLLRKTLG
>CP033388.1|QAT92563.1|2703403_2705038_-|hypothetical-protein
MEERTAELNSVYKSLAAQRAPWETWWDRLRDYVLPRRLNREGDVSLPNRDAMDRMTDTTAVEACQKLASGHMSYITPSHDVWFKWSAPDDRGGDEAEAWYNQCSEIALKELSVSNFYTEIHECFLDRVALGTGSLFTGISSDGRLLFTNIPCGQFACAENAEGRVDTYVREFTYTAHQARSMFGVKALGPKAREVLERGGNPYATTLRFLHVVRPRTRRSRRREQASHMPFESVYLSLDDQVIVEEGGYMEFPYLVTRFLKWGSGPYGLAPGRLVFPAIQQVQFLNRILDTLGEVAAFPRILELANQIGEVDLRAGGRTVITPEAASLHLPREWATQGRYDVGMDRLAQKQDAIRRAYYLPMLELWSGHRGNMTATEVMARENERVLMFSPSFTLFVSDLYSTMTRIFSLLFRMGKFPRPPRAVLRVGRDGSVAVGEPRVVYQSKIALVLRRLQSEGMDRSLQRLNMMMQAAPDLADHVDWDHCFRLSARVDGAPESMLRPWADVRAMRKERADLQQGASLAPAEEDPYASLNPLLDQLTAIQK
>CP033388.1|QAT92562.1|2703125_2703407_-|hypothetical-protein
MNQDTTLQQEASVREARFKRRQLLRVFDTPDGRETLSFLEARFQTDLPVFQGSPGNYDPLDAMRRDAYREIFLYIRRQLQLAIKETTEEEKND
>CP033388.1|QAT92561.1|2702251_2703133_-|hypothetical-protein
MIDSIDNSMAAPIRDAEGSGAVSPETDALSETAVQTEPFPPLLGEDGGFAPDWYARFDELKGMEKSLSKFKTPEALAKSYAELERLRRYPGVENEEQMARFRRLAGLPESEEEYRLERPESTPESEWNAGLAERMARTAYRYGVPPEAMNALQETMAQAYNEAREHMEDARMEMEMQAEQSLQQEWGSNYERNMGRAAAVLRRLASETGVDADALLDNPGLGSNPDAIRLLYQASRLLDEAPLHHTGNAAPSPAEEAMRMESDPSHPLYEAYMNVNHPNHRYANELYDRLTTR
>CP033388.1|QAT92560.1|2701079_2701583_-|thioredoxin-family-protein
MMNRHFIFALCTVLGFSVSGISMAQSVPTDKEAAAKAAKAAKVKFRWGKSLKSAQKQAAETGLPIVLLFTGTSWCGFCVKLEKEILSKKDFKQGMDGVAIGVKFEFGSSDFSKSKEAKTYNITGVPAMVVVDADGKELGRTGYVPGRTPAQYVEFFKKYAPKTAEGK
>CP033388.1|QAT92559.1|2700554_2700899_-|rubrerythrin
MPEFTNAFSGLKEDRKLTHDELVRAIRFMIAAEYESIQLYTQLAASIDDKLAQEVLWDISNEEKEHAGEFFRLLQVLAPDEQGFYDEGMGETNEKIDKLKASCPDGACSSSAAH
>CP033388.1|QAT92558.1|2699928_2700273_-|rubrerythrin
MPEFTNAFSGLKENRKLTHDELVRAIRFMIAAEYEAIQLYTQLAESIDHKLAQEVLLDISNEEKEHAGEFLRLLQVLAPDEQGFYDEGMGETNEKIDKLKASCPDGACSSSASH
>CP033388.1|QAT92568.1|2709550_2709748_-|hypothetical-protein
MKYELRRMRKFSPGLTVNNSGGAGKGSMILMEEEAWKSAGSAGFPEELSPVAGGGIGCFLLLFSI
>CP033388.1|QAT92569.1|2709896_2713520_-|aldehyde-dehydrogenase-family-protein
MTDSSIPDMMAEARRGQWTDQQLAAKAVELAESILKQSNAGMRGKEKRQAQQMERMMNDPAGKAFTLALADRVFRPSSPARGAELFRYLLDGYGVPRYLSAADRFAMKMGGRFSAQFPGVVIPVITSQLRKESSNVILPAEDGKLRPHLRRRRKGGIRMNINQLGEAILGESEAHHRLQQVVDRLTDKDCDYISVKISAIFSQIHLVAFEETVKLIQERLRILYRAAITNAVTLPDGSRKPKFVNLDMEEYRDLHLTAEAFKRTLMEDEFMHLEAGIVLQAYLPDSWEEQMKLCAWAKERVEQGGARIKIRLVKGANLAMEKVEASMHGWAQAPYGTKAQVDANYKRMLHYGCMPDNARYVQFGVASHNLFDLCYAMLLREREGVRDQVEFEMLEGMANHQARVIRQAADGLLLYAPVVLKEDFHSAIAYLVRRLDENTSEENFLHDLFGMTPGSRSWEVQKKRFLKACQEKDEVKYGPNRTQNRAADPIQPSHYRDAFANERDTDWSLRQNAEWINGMIAAEKEKSGEEIPLVIDGEEITTNLWGVGRDPSRHNEVSYKFAYADFDQVEHALVTADRARSSWASKSIGERAEILHRAAQELSRIRGEAIAAMVRDAGKAPTEADVEVSEAIDFCRYYAEGLDRDGMNDGVEMSPLGTICVMSPWNFPFAIPTGGVAAALMAGNAVVFKPSELAVYTAWQIVQAFWRAGVPKNVLQFVPMPRNEISRKFLMDPRLNGVIMTGSFRTGKMLRELRPDLHVLAETSGKDAMIITTTADPDQAVKDLVKSAFGHSGQKCSAASVAIVEASVYDNPAFLRQLKDAAASLKVGGSWEVNSVVTPLIREPEGNLLRALTQLEPGEEWLLKPEPSEDNPCLWSPGIRLGVKPGSWFHQTECFGPVLGIIRAENLEEAIDIQNDSEFGLTGGLQSLDEREIALWKTKVQVGNAYINRVITGAIVRRQPFGGWNHSSMGPGAKAGGPNYLTMLGSWEEKALPQKLRTPGERISGLVEKLCSELPDCAKRIRSAAGSQAKWWMEEFGVEHDPSRVYGENNTFRYIPVKGILARVENMSDDNVAILLLGAKLCGVLLHLSIGTSRPWIQKMHGYYASLTVETEAELIGRMPEALPGIRFLRGTDISETLANAARARDVEVLDRPVLANGRLELLGYFREQAVSETVHRYGNLIPPPGSFKTGQRVKGREGLNPGFRVS
>CP033388.1|QAT92570.1|2713678_2714674_-|hypothetical-protein
MDGSLFMRALAVIAFLALAFPGRAEMDALSVSCSAAPSLPSPVLVVYGSEEPGSAEARWLKALQPGTEERRALDEYVRDVQFVTVPRHPSVKDWEEDGSLSRAAMHGVRMLPSVVFLDSKGRVFDLVERGASAASLREKVSLLAEKAQRVRPVTRVNDIPKGGDPAAEASSICRELEQVPPEAWFRDYPGTMKRLEKLNCTVPAFLNAREAALRLEKNRKTAELLGESFRASKASSIRTCLEAWRTCADDPSLSVEERQLILLSMVHPLWVRLEKVLYREAHTPESEDAFNQAVAVLEEVRDMNRSSVCGRRAHQLREELRRARLAAARYD
>CP033388.1|QAT92571.1|2714673_2715123_-|KH-domain-containing-protein
MTVQEIAEQSLKSLLASLGFSADIEVTETDGIVCLNISSPDSQYIIGGDGDRLDDLQYLVNRMIQRKMEDAPRVKVDCDHYRERNEARLLEKARSLAERVQESGKPMKMPPLNAYHRRLVHNALQSMDGIVTESEEGDSRYKRITIRKG
>CP033388.1|QAT92572.1|2715243_2715513_+|hypothetical-protein
MKICGSSVPYHVRNAVPALPSGNTVPFHLRNQMQETPLRKEATVFCLPADVPRLSPLLPAANETWNTGIHSHANQKGISAQPVFYYIKS
>CP033388.1|QAT92573.1|2715647_2717903_+|catalase-HPII
MKKKKPPMEDSAAPFPNGKEAAPHYTDTIDPELITPTPKPTPPNAEPSAPGSMKMPDNATEKIRELDAMRSNGMGQALTSNLGVKISDDQNTLKAGSRGPSLLEDFHFLEKMAHFDQERIPERVVHARGSGAHGYFQVYKSLSKYTKAAFLQDPGEKTPVFVRFSTVQGFRGSPDTVRDIRGWATKFYTKEGNYDLVGNNTPVFFIQDAIKFPDFVHAVKPEPHNEMPQGQTAHDSFWDYVSLQPETLHNVMWAMSDRGIPRSFRTMEGFGIHTYKLVNEEGKSTFVRFHWKPVYGKKSLVWDEAQVLTGRDPDFHRKDLWQSIEAGDYPEYELGLQLIPEEDADQFDFDILDPTKLIPEALVPVEIVGKMVLNRNPDNFFAETEQAAFCPANIVPGIDFSDDPLLQGRIFSYSDTQRHRLGGANFTEIPINRPICPFHNNQRDGFHRMQIDASPANYDPNSIGNNWPRETPPEKGGFTTSPQTVSGVKERLRSPSFAEYYSHPRLFWMSQTPVEQEHIINAFSFELGKVTRPYIRERVVDLLTRIDPDLASGVARNLGIELTREQLGRELPRPVCGLEKDPSLSLYAHTDGNLKGLRVSLLAADGVSLKSVKEICDALHEEGIHPQIIAPHMGSVTTEEGESLPVNGTLSGTPSVLFDSVIVPEGEQSIAALLKDGDAKYHLRQAYRHLKAIGLPGNAKAMLEAASLPQDMDDAGLLMPKDTKSLMLPFITAMKQHRVWSREPKTLDFGA
>CP033388.1|QAT92574.1|2718203_2718407_+|hypothetical-protein
MRWKEYIPGKQARQGENEKKCVLISLFSMTVKSGHHKFQKMERRQTRISCPFPGICFRIISGTCSPT
>CP033388.1|QAT92575.1|2718399_2721099_-|hypothetical-protein
MIVQSALFLDYGRLTLMDRERTDAVWKKYGRSLWNFAGSYGLGIALMLILLVLTFAGTLHQVRLSSAMGSEAAIESFFGAAYVLIPLGGENSLISLPLPGMGITCVLLFANLLIGGVFRIRWTWRHAGVLVAHGGILLLLAGIMLGNKMTVAVEQVELPQGDRVHEYSLPFDLRLNRFVPEFYPGTSKPKSYESQITVFPESGGQYDAVIRMNEPLRLSGWTLYQMSWGQDSLHPGRLISILRASHNPLEQMPKWSSYIIAVGLLWHFACVFGRYLRRKPGLASAGTAATDELQAVSAPGGKKRLRLAGICLLVAAIFGVGMLAARPDVHPVLVEHYVPWSPFLVERAGAMAVQDGGRLKPVSTYAGFHLLRTLGKRSFVVDTPEGKRKLSPVEWMLDCMFRPELAEQYPVFLVNREEVVRRLHLPDQKDKRKKYSYAQLAERWEEMTRAVREIRLLGETNLTEAQKEILSLSRNFDVMRGWMLVSRIMLENPAAMERMEFPRWFPSADRDGERLWTAAPDKAAGAFLAMASLLERKAIGMEGAEASALRMKAEGLLLEKLAQPNEAASAGERHSLEREIFYYRLDPLYISLAVFVAAFVCLLLCALFRPAANAPLWRRFLRPGGFSLAWLTGAGGTVVLAAALVIRMLITMRSPVGNTYETIAFIACMGVLCALVVELFSKKGIVLAAGLLLGAFSCQMGILYEASQAVDHMDPLVAILRSNFLLSTHVITIVLGYAAGLLAAVLSHIYLLASPLRLIGGKTEQSLDRMAYGILCFSLVFTLVGTVFGGIWGNESWGRFWGWDPKENGALMIVLWQLTVLHARKAGWLSSWLLHFSNVVGGVIIAFAWWGVNMLGVGLHSYGFTSGRDALDMFYWSEAVLCVLFIILHYRALRRVDVR
>CP033388.1|QAT92576.1|2721141_2721717_-|rubrerythrin-family-protein
MKSIKGTETEKNLLKAFAGESEARNRYTYFAGVAKKAGYEQIAAIFLETADNEKEHAKVFFKLLKDACIEVTHAVCTAPLESTEDCLLAAAAGEHDEWSDMYPAFAEVADREGFPAIAETFRKIASVEQHHEARYLKLAENVREGRVFAKEKEIQWKCRNCGYVHTGSTAPKVCPACAHPQAFFEELADNF
>CP033388.1|QAT92577.1|2721801_2722023_+|hypothetical-protein
MCISGKTYGSFLIWENYRHTRFCCPPIRAGSKTASRETGRNPYRSIRPKHEPDHLTPPVQTVKLNEKNLKLHP

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Crispr_ID: CP033388_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP033388_4

2707429-2707924

Orphan

Consensus_repeat	Method
CCAGGTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	PILER-CR
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CRISPRCasFinder
GTTTCAATCCACGCACTCNTNNNNGNGNG	CRT
GTTTCAATCCACGCACTCGT--GAGAGTGCGAC	PILER-CR
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	CRISPRCasFinder

7 spacers

The CRISPR arrays of CP033388_4

>merge|CP033388|4|2707429-2707924|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,CRISPRCasFinder
CCGGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACTAAAACACCATGCTCAAGTTTCCGGCACCATCCTCGTTTCAATCCACGCACTCCTTGCGGAGTGCGACGGTCCGCGGCGTCATCTTTAATAACAGTTCCAAGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACAGCGCAGCAGGCCATCCGCGAAACCCTGCGCCAGTTTCAATCCACGCACTCGTGAGAGTGCGACCGCAGTAATGAGTTGCGCCTTTTGTCATACAACTGTTTCAATCCACGCACTCGTGAGAGTGCGACGCCTTTATCTCTGACCCGCTTTGCCTTGCCCTTGTTTCAATCCACGCACTCGTGAGAGTGCGACGAAGATGTCTGGGAACTATGTCATTTTACAAAAGTTTCAATCCACGCACTCGTGAGAGTGCGACGCTTGCCGACGGAGGCGTCCGCCCCGAGAAGACCGTTTCAATCCACGCACTCGTGAGAGTGCGACTC

>CP033388|4|3|2707429-2707600|PILER-CR
CCGGGTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	TAAAACACCATGCTCAAGTTTCCGGCACCAT
CCTCGTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GGTCCGCGGCGTCATCTTTAATAACAGTTC
CAAGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACAGCGCAGCAGGCCATCCGCGAAACCCTGCGCCAGTTTCAATCCACGCACTCGTGAGAGTGCGAC	CGCAGTAATGAGTTGCGCCTTTTGTCATACAACT
GTTTCAATCCACGCACTCGTGAGAGTGCGAC	GCCTTTATCTCTGACCCGCTTTGCCTTGCCCTT
GTTTCAATCCACGCACTCGTGAGAGTGCGAC	GAAGATGTCTGGGAACTATGTCATTTTACAAAA
GTTTCAATCCACGCACTCGTGAGAGTGCGAC	GCTTGCCGACGGAGGCGTCCGCCCCGAGAAGACC


>CP033388|4|4|2707433-2707601|CRISPRCasFinder
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	TAAAACACCATGCTCAAGTTTCCGGCACCATCCTC
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GGTCCGCGGCGTCATCTTTAATAACAGTTCCAAG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGACAGCGCAGCAGGCCATCCGCGAAACCCTGCGCCAGTTTCAATCCACGCACTCGTGAGAGTGCGACCGCAGTAATGAGTTGCGCCTTTTGTCATACAACTGTTTCAATCCACGCACTCGTGAGAGTGCGACGCCTTTATCTCTGACCCGCTTTGCCTTGCCCTTGTTTCAATCCACGCACTCGTGAGAGTGCGACGAAGATGTCTGGGAACTATGTCATTTTACAAAAGTTTCAATCCACGCACTCGTGAGAGTGCGACGC	TTGCCGACGGAGGCGTCCGCCCCGAGAAGACC


>CP033388|4|3|2707433-2707920|CRT
GTTTCAATCCACGCACTCCTTGCGGAGTG	CGACTAAAACACCATGCTCAAGTTTCCGGCACCATCCTC
GTTTCAATCCACGCACTCCTTGCGGAGTG	CGACGGTCCGCGGCGTCATCTTTAATAACAGTTCCAAG
GTTTCAATCCACGCACTCCTTGCGGAGTG	CGACAGCGCAGCAGGCCATCCGCGAAACCCTGCGCCA
GTTTCAATCCACGCACTCGTGAGAGTGCG	ACCGCAGTAATGAGTTGCGCCTTTTGTCATACAACT
GTTTCAATCCACGCACTCGTGAGAGTGCG	ACGCCTTTATCTCTGACCCGCTTTGCCTTGCCCTT
GTTTCAATCCACGCACTCGTGAGAGTGCG	ACGAAGATGTCTGGGAACTATGTCATTTTACAAAA
GTTTCAATCCACGCACTCGTGAGAGTGCG	ACGCTTGCCGACGGAGGCGTCCGCCCCGAGAAGACC
GTTTCAATCCACGCACTCGTGAGAGTGCG

>CP033388|4|4|2707634-2707922|PILER-CR
	TAAAACACCATGCTCAAGTTTCCGGCACCAT
CCTCGTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GGTCCGCGGCGTCATCTTTAATAACAGTTC
CAAGGTTTCAATCCACGCACTCCTTGCGGAGTGCGACAGCGCAGCAGGCCATCCGCGAAACCCTGCGCCAGTTTCAATCCACGCACTCGTGAGAGTGCGAC	CGCAGTAATGAGTTGCGCCTTTTGTCATACAACT
GTTTCAATCCACGCACTCGTGAGAGTGCGAC	GCCTTTATCTCTGACCCGCTTTGCCTTGCCCTT
GTTTCAATCCACGCACTCGTGAGAGTGCGAC	GAAGATGTCTGGGAACTATGTCATTTTACAAAA
GTTTCAATCCACGCACTCGTGAGAGTGCGAC	GCTTGCCGACGGAGGCGTCCGCCCCGAGAAGACC
GTTTCAATCCACGCACTCGTGAGAGTGCGAC

>CP033388|4|5|2707827-2707924|CRISPRCasFinder
	TAAAACACCATGCTCAAGTTTCCGGCACCATCCTC
GTTTCAATCCACGCACTCCTTGCGGAGTGCGAC	GGTCCGCGGCGTCATCTTTAATAACAGTTCCAAG
GTTTCAATCCACGCACTCCTTGCGGAGTGCGACAGCGCAGCAGGCCATCCGCGAAACCCTGCGCCAGTTTCAATCCACGCACTCGTGAGAGTGCGACCGCAGTAATGAGTTGCGCCTTTTGTCATACAACTGTTTCAATCCACGCACTCGTGAGAGTGCGACGCCTTTATCTCTGACCCGCTTTGCCTTGCCCTTGTTTCAATCCACGCACTCGTGAGAGTGCGACGAAGATGTCTGGGAACTATGTCATTTTACAAAAGTTTCAATCCACGCACTCGTGAGAGTGCGACGC	TTGCCGACGGAGGCGTCCGCCCCGAGAAGACC
GTTTCAATCCACGCACTCGTGAGAGTGCGACTC

Protein	Signature genes	Signature genes Name	Protein_function
CP033388.1\|QAT92569.1\|2709896_2713520_-\|aldehyde-dehydrogenase-family-protein	unknown	unknown	gnl\|CDD\|143443
CP033388.1\|QAT92567.1\|2706538_2706796_+\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92571.1\|2714673_2715123_-\|KH-domain-containing-protein	unknown	unknown	gnl\|CDD\|224760
CP033388.1\|QAT92564.1\|2705046_2705262_-\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92577.1\|2721801_2722023_+\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92562.1\|2703125_2703407_-\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92576.1\|2721141_2721717_-\|rubrerythrin-family-protein	unknown	unknown	gnl\|CDD\|153100
CP033388.1\|QAT92558.1\|2699928_2700273_-\|rubrerythrin	unknown	unknown	gnl\|CDD\|275328
CP033388.1\|QAT92563.1\|2703403_2705038_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378829
CP033388.1\|QAT92570.1\|2713678_2714674_-\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92561.1\|2702251_2703133_-\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92566.1\|2706248_2706542_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|367747
CP033388.1\|QAT92565.1\|2705577_2706198_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|222807
CP033388.1\|QAT92568.1\|2709550_2709748_-\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92575.1\|2718399_2721099_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274447
CP033388.1\|QAT92573.1\|2715647_2717903_+\|catalase-HPII	unknown	unknown	gnl\|CDD\|236886
CP033388.1\|QAT92559.1\|2700554_2700899_-\|rubrerythrin	unknown	unknown	gnl\|CDD\|275328
CP033388.1\|QAT92572.1\|2715243_2715513_+\|hypothetical-protein	unknown	unknown	unknown
CP033388.1\|QAT92560.1\|2701079_2701583_-\|thioredoxin-family-protein	unknown	unknown	gnl\|CDD\|379034
CP033388.1\|QAT92574.1\|2718203_2718407_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP033388.1\|QAT92569.1\|2709896_2713520_-\|aldehyde-dehydrogenase-family-protein	gnl\|CDD\|143443	cd07125, ALDH_PutA-P5CDH, Delta(1)-pyrroline-5-carboxylate dehydrogenase, PutA. The proline catabolic enzymes of the aldehyde dehydrogenase (ALDH) protein superfamily, proline dehydrogenase and Delta(1)-pyrroline-5-carboxylate dehydrogenase (P5CDH, (EC=1.5.1.12 )), catalyze the two-step oxidation of proline to glutamate; P5CDH catalyzes the oxidation of glutamate semialdehyde, utilizing NAD+ as the electron acceptor. In some bacteria, the two enzymes are fused into the bifunctional flavoenzyme, proline utilization A (PutA) These enzymes play important roles in cellular redox control, superoxide generation, and apoptosis. In certain prokaryotes such as Escherichia coli, PutA is also a transcriptional repressor of the proline utilization genes.	0
CP033388.1\|QAT92566.1\|2706248_2706542_+\|hypothetical-protein	gnl\|CDD\|367747	pfam03965, Penicillinase_R, Penicillinase repressor. The penicillinase repressor negatively regulates expression of the penicillinase gene. The N-terminal region of this protein is involved in operator recognition, while the C-terminal is responsible for dimerization of the protein.	1.33159e-06
CP033388.1\|QAT92571.1\|2714673_2715123_-\|KH-domain-containing-protein	gnl\|CDD\|224760	COG1847, Jag, Predicted RNA-binding protein [General function prediction only].	4.02466e-30
CP033388.1\|QAT92565.1\|2705577_2706198_+\|hypothetical-protein	gnl\|CDD\|222807	PHA00662, PHA00662, hypothetical protein.	9.5243e-22
CP033388.1\|QAT92558.1\|2699928_2700273_-\|rubrerythrin	gnl\|CDD\|275328	TIGR04535, conserved_hypothetical_protein, ferritin-like protein. Two families of proteins are known to be encoded, with some regularity, next to the gene for encapsulin (pfam04454), with surrounds the target protein to form a prokaryotic proteinaceous organelle. One is the family of enzymes that includes Dyp-type peroxidases. The other is this family, with a resemblance to bacterioferritins. Encapsulin-associated forms of the proteins in these two families have a necessary C-terminal motif that resembles DGSL[SGN]IGSL[KR]. Members of this family that include the last columns of the model in the hit region (and are encoded next to the encapsulin gene) should be designated encapsulin-associated ferritin-like protein.	1.76902e-18
CP033388.1\|QAT92573.1\|2715647_2717903_+\|catalase-HPII	gnl\|CDD\|236886	PRK11249, katE, hydroperoxidase II; Provisional.	0
CP033388.1\|QAT92559.1\|2700554_2700899_-\|rubrerythrin	gnl\|CDD\|275328	TIGR04535, conserved_hypothetical_protein, ferritin-like protein. Two families of proteins are known to be encoded, with some regularity, next to the gene for encapsulin (pfam04454), with surrounds the target protein to form a prokaryotic proteinaceous organelle. One is the family of enzymes that includes Dyp-type peroxidases. The other is this family, with a resemblance to bacterioferritins. Encapsulin-associated forms of the proteins in these two families have a necessary C-terminal motif that resembles DGSL[SGN]IGSL[KR]. Members of this family that include the last columns of the model in the hit region (and are encoded next to the encapsulin gene) should be designated encapsulin-associated ferritin-like protein.	5.35331e-17
CP033388.1\|QAT92575.1\|2718399_2721099_-\|hypothetical-protein	gnl\|CDD\|274447	TIGR03144, cytochrome_c_biogenesis_protein_chloroplast, cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction. [Energy metabolism, Electron transport, Protein fate, Protein modification and repair].	1.0358e-35
CP033388.1\|QAT92576.1\|2721141_2721717_-\|rubrerythrin-family-protein	gnl\|CDD\|153100	cd01041, Rubrerythrin, Rubrerythrin, ferritin-like diiron-binding domain. Rubrerythrin domain is a nonheme iron binding domain found in many air-sensitive bacteria and archaea and member of a broad superfamily of ferritin-like diiron-carboxylate proteins. The homodimeric rubrerythrin protein contains a binuclear metal center located within a four helix bundle. Many, but not all, rubrerythrin proteins have a second domain with a rubredoxin-like hexacoordinated iron center. Rubrerythrin is thought to reduce hydrogen peroxide as part of an oxidative stress protection system but its function is still poorly understood.	9.03876e-56
CP033388.1\|QAT92560.1\|2701079_2701583_-\|thioredoxin-family-protein	gnl\|CDD\|379034	pfam13098, Thioredoxin_2, Thioredoxin-like domain.	1.41074e-13
CP033388.1\|QAT92563.1\|2703403_2705038_-\|hypothetical-protein	gnl\|CDD\|378829	pfam12236, Head-tail_con, Bacteriophage head to tail connecting protein. This family of head-tail connector proteins is found in bacteria and viruses. Proteins in this family are typically between 516 and 555 amino acids in length. This protein is found in Phage T7 and T3 among others.	1.02856e-155

>CP033388.1|QAT92567.1|2706538_2706796_+|hypothetical-protein
MKNPLLSTEEKRRWLARVFRDEDGEYSQADKFKALVEDTKLAALQQEEEEFKRQREMGAAPQDPILALLQSLPPAELNLNNHPSS
>CP033388.1|QAT92566.1|2706248_2706542_+|hypothetical-protein
MKALDFIQIFASNVRRLDFRLSSAQVILAVIAGYRRHSTITEATRLHPNTVTNILQDLIAQGYVNRIGDGRPYVYRPTADGEQLAGNLLDKNTFPGT
>CP033388.1|QAT92565.1|2705577_2706198_+|hypothetical-protein
MINESLLQPDTPSALDICNAALSKIGEAPLDALIANESTASRLCVLHYHPARRETLCMARWTFAATQTTLDSVSAQAPNSLTPYQFTLPADCLRVLDVECSEWKMQGRRIHASCAPLPLSYIADIENADQFDPLFMDALATRLAEKLAMPLTGNQSLRQNLNQEFHKIILPQAATVNAVQCFSNDSHPLLDLLRKIKSPSCPEECE
>CP033388.1|QAT92564.1|2705046_2705262_-|hypothetical-protein
MGFMKPSTPSASAPEQTIPVKAESVEQEVGEDYQARERQRQGMISTILARRHSSAGQGEVNPRTLLRKTLG
>CP033388.1|QAT92563.1|2703403_2705038_-|hypothetical-protein
MEERTAELNSVYKSLAAQRAPWETWWDRLRDYVLPRRLNREGDVSLPNRDAMDRMTDTTAVEACQKLASGHMSYITPSHDVWFKWSAPDDRGGDEAEAWYNQCSEIALKELSVSNFYTEIHECFLDRVALGTGSLFTGISSDGRLLFTNIPCGQFACAENAEGRVDTYVREFTYTAHQARSMFGVKALGPKAREVLERGGNPYATTLRFLHVVRPRTRRSRRREQASHMPFESVYLSLDDQVIVEEGGYMEFPYLVTRFLKWGSGPYGLAPGRLVFPAIQQVQFLNRILDTLGEVAAFPRILELANQIGEVDLRAGGRTVITPEAASLHLPREWATQGRYDVGMDRLAQKQDAIRRAYYLPMLELWSGHRGNMTATEVMARENERVLMFSPSFTLFVSDLYSTMTRIFSLLFRMGKFPRPPRAVLRVGRDGSVAVGEPRVVYQSKIALVLRRLQSEGMDRSLQRLNMMMQAAPDLADHVDWDHCFRLSARVDGAPESMLRPWADVRAMRKERADLQQGASLAPAEEDPYASLNPLLDQLTAIQK
>CP033388.1|QAT92562.1|2703125_2703407_-|hypothetical-protein
MNQDTTLQQEASVREARFKRRQLLRVFDTPDGRETLSFLEARFQTDLPVFQGSPGNYDPLDAMRRDAYREIFLYIRRQLQLAIKETTEEEKND
>CP033388.1|QAT92561.1|2702251_2703133_-|hypothetical-protein
MIDSIDNSMAAPIRDAEGSGAVSPETDALSETAVQTEPFPPLLGEDGGFAPDWYARFDELKGMEKSLSKFKTPEALAKSYAELERLRRYPGVENEEQMARFRRLAGLPESEEEYRLERPESTPESEWNAGLAERMARTAYRYGVPPEAMNALQETMAQAYNEAREHMEDARMEMEMQAEQSLQQEWGSNYERNMGRAAAVLRRLASETGVDADALLDNPGLGSNPDAIRLLYQASRLLDEAPLHHTGNAAPSPAEEAMRMESDPSHPLYEAYMNVNHPNHRYANELYDRLTTR
>CP033388.1|QAT92560.1|2701079_2701583_-|thioredoxin-family-protein
MMNRHFIFALCTVLGFSVSGISMAQSVPTDKEAAAKAAKAAKVKFRWGKSLKSAQKQAAETGLPIVLLFTGTSWCGFCVKLEKEILSKKDFKQGMDGVAIGVKFEFGSSDFSKSKEAKTYNITGVPAMVVVDADGKELGRTGYVPGRTPAQYVEFFKKYAPKTAEGK
>CP033388.1|QAT92559.1|2700554_2700899_-|rubrerythrin
MPEFTNAFSGLKEDRKLTHDELVRAIRFMIAAEYESIQLYTQLAASIDDKLAQEVLWDISNEEKEHAGEFFRLLQVLAPDEQGFYDEGMGETNEKIDKLKASCPDGACSSSAAH
>CP033388.1|QAT92558.1|2699928_2700273_-|rubrerythrin
MPEFTNAFSGLKENRKLTHDELVRAIRFMIAAEYEAIQLYTQLAESIDHKLAQEVLLDISNEEKEHAGEFLRLLQVLAPDEQGFYDEGMGETNEKIDKLKASCPDGACSSSASH
>CP033388.1|QAT92568.1|2709550_2709748_-|hypothetical-protein
MKYELRRMRKFSPGLTVNNSGGAGKGSMILMEEEAWKSAGSAGFPEELSPVAGGGIGCFLLLFSI
>CP033388.1|QAT92569.1|2709896_2713520_-|aldehyde-dehydrogenase-family-protein
MTDSSIPDMMAEARRGQWTDQQLAAKAVELAESILKQSNAGMRGKEKRQAQQMERMMNDPAGKAFTLALADRVFRPSSPARGAELFRYLLDGYGVPRYLSAADRFAMKMGGRFSAQFPGVVIPVITSQLRKESSNVILPAEDGKLRPHLRRRRKGGIRMNINQLGEAILGESEAHHRLQQVVDRLTDKDCDYISVKISAIFSQIHLVAFEETVKLIQERLRILYRAAITNAVTLPDGSRKPKFVNLDMEEYRDLHLTAEAFKRTLMEDEFMHLEAGIVLQAYLPDSWEEQMKLCAWAKERVEQGGARIKIRLVKGANLAMEKVEASMHGWAQAPYGTKAQVDANYKRMLHYGCMPDNARYVQFGVASHNLFDLCYAMLLREREGVRDQVEFEMLEGMANHQARVIRQAADGLLLYAPVVLKEDFHSAIAYLVRRLDENTSEENFLHDLFGMTPGSRSWEVQKKRFLKACQEKDEVKYGPNRTQNRAADPIQPSHYRDAFANERDTDWSLRQNAEWINGMIAAEKEKSGEEIPLVIDGEEITTNLWGVGRDPSRHNEVSYKFAYADFDQVEHALVTADRARSSWASKSIGERAEILHRAAQELSRIRGEAIAAMVRDAGKAPTEADVEVSEAIDFCRYYAEGLDRDGMNDGVEMSPLGTICVMSPWNFPFAIPTGGVAAALMAGNAVVFKPSELAVYTAWQIVQAFWRAGVPKNVLQFVPMPRNEISRKFLMDPRLNGVIMTGSFRTGKMLRELRPDLHVLAETSGKDAMIITTTADPDQAVKDLVKSAFGHSGQKCSAASVAIVEASVYDNPAFLRQLKDAAASLKVGGSWEVNSVVTPLIREPEGNLLRALTQLEPGEEWLLKPEPSEDNPCLWSPGIRLGVKPGSWFHQTECFGPVLGIIRAENLEEAIDIQNDSEFGLTGGLQSLDEREIALWKTKVQVGNAYINRVITGAIVRRQPFGGWNHSSMGPGAKAGGPNYLTMLGSWEEKALPQKLRTPGERISGLVEKLCSELPDCAKRIRSAAGSQAKWWMEEFGVEHDPSRVYGENNTFRYIPVKGILARVENMSDDNVAILLLGAKLCGVLLHLSIGTSRPWIQKMHGYYASLTVETEAELIGRMPEALPGIRFLRGTDISETLANAARARDVEVLDRPVLANGRLELLGYFREQAVSETVHRYGNLIPPPGSFKTGQRVKGREGLNPGFRVS
>CP033388.1|QAT92570.1|2713678_2714674_-|hypothetical-protein
MDGSLFMRALAVIAFLALAFPGRAEMDALSVSCSAAPSLPSPVLVVYGSEEPGSAEARWLKALQPGTEERRALDEYVRDVQFVTVPRHPSVKDWEEDGSLSRAAMHGVRMLPSVVFLDSKGRVFDLVERGASAASLREKVSLLAEKAQRVRPVTRVNDIPKGGDPAAEASSICRELEQVPPEAWFRDYPGTMKRLEKLNCTVPAFLNAREAALRLEKNRKTAELLGESFRASKASSIRTCLEAWRTCADDPSLSVEERQLILLSMVHPLWVRLEKVLYREAHTPESEDAFNQAVAVLEEVRDMNRSSVCGRRAHQLREELRRARLAAARYD
>CP033388.1|QAT92571.1|2714673_2715123_-|KH-domain-containing-protein
MTVQEIAEQSLKSLLASLGFSADIEVTETDGIVCLNISSPDSQYIIGGDGDRLDDLQYLVNRMIQRKMEDAPRVKVDCDHYRERNEARLLEKARSLAERVQESGKPMKMPPLNAYHRRLVHNALQSMDGIVTESEEGDSRYKRITIRKG
>CP033388.1|QAT92572.1|2715243_2715513_+|hypothetical-protein
MKICGSSVPYHVRNAVPALPSGNTVPFHLRNQMQETPLRKEATVFCLPADVPRLSPLLPAANETWNTGIHSHANQKGISAQPVFYYIKS
>CP033388.1|QAT92573.1|2715647_2717903_+|catalase-HPII
MKKKKPPMEDSAAPFPNGKEAAPHYTDTIDPELITPTPKPTPPNAEPSAPGSMKMPDNATEKIRELDAMRSNGMGQALTSNLGVKISDDQNTLKAGSRGPSLLEDFHFLEKMAHFDQERIPERVVHARGSGAHGYFQVYKSLSKYTKAAFLQDPGEKTPVFVRFSTVQGFRGSPDTVRDIRGWATKFYTKEGNYDLVGNNTPVFFIQDAIKFPDFVHAVKPEPHNEMPQGQTAHDSFWDYVSLQPETLHNVMWAMSDRGIPRSFRTMEGFGIHTYKLVNEEGKSTFVRFHWKPVYGKKSLVWDEAQVLTGRDPDFHRKDLWQSIEAGDYPEYELGLQLIPEEDADQFDFDILDPTKLIPEALVPVEIVGKMVLNRNPDNFFAETEQAAFCPANIVPGIDFSDDPLLQGRIFSYSDTQRHRLGGANFTEIPINRPICPFHNNQRDGFHRMQIDASPANYDPNSIGNNWPRETPPEKGGFTTSPQTVSGVKERLRSPSFAEYYSHPRLFWMSQTPVEQEHIINAFSFELGKVTRPYIRERVVDLLTRIDPDLASGVARNLGIELTREQLGRELPRPVCGLEKDPSLSLYAHTDGNLKGLRVSLLAADGVSLKSVKEICDALHEEGIHPQIIAPHMGSVTTEEGESLPVNGTLSGTPSVLFDSVIVPEGEQSIAALLKDGDAKYHLRQAYRHLKAIGLPGNAKAMLEAASLPQDMDDAGLLMPKDTKSLMLPFITAMKQHRVWSREPKTLDFGA
>CP033388.1|QAT92574.1|2718203_2718407_+|hypothetical-protein
MRWKEYIPGKQARQGENEKKCVLISLFSMTVKSGHHKFQKMERRQTRISCPFPGICFRIISGTCSPT
>CP033388.1|QAT92575.1|2718399_2721099_-|hypothetical-protein
MIVQSALFLDYGRLTLMDRERTDAVWKKYGRSLWNFAGSYGLGIALMLILLVLTFAGTLHQVRLSSAMGSEAAIESFFGAAYVLIPLGGENSLISLPLPGMGITCVLLFANLLIGGVFRIRWTWRHAGVLVAHGGILLLLAGIMLGNKMTVAVEQVELPQGDRVHEYSLPFDLRLNRFVPEFYPGTSKPKSYESQITVFPESGGQYDAVIRMNEPLRLSGWTLYQMSWGQDSLHPGRLISILRASHNPLEQMPKWSSYIIAVGLLWHFACVFGRYLRRKPGLASAGTAATDELQAVSAPGGKKRLRLAGICLLVAAIFGVGMLAARPDVHPVLVEHYVPWSPFLVERAGAMAVQDGGRLKPVSTYAGFHLLRTLGKRSFVVDTPEGKRKLSPVEWMLDCMFRPELAEQYPVFLVNREEVVRRLHLPDQKDKRKKYSYAQLAERWEEMTRAVREIRLLGETNLTEAQKEILSLSRNFDVMRGWMLVSRIMLENPAAMERMEFPRWFPSADRDGERLWTAAPDKAAGAFLAMASLLERKAIGMEGAEASALRMKAEGLLLEKLAQPNEAASAGERHSLEREIFYYRLDPLYISLAVFVAAFVCLLLCALFRPAANAPLWRRFLRPGGFSLAWLTGAGGTVVLAAALVIRMLITMRSPVGNTYETIAFIACMGVLCALVVELFSKKGIVLAAGLLLGAFSCQMGILYEASQAVDHMDPLVAILRSNFLLSTHVITIVLGYAAGLLAAVLSHIYLLASPLRLIGGKTEQSLDRMAYGILCFSLVFTLVGTVFGGIWGNESWGRFWGWDPKENGALMIVLWQLTVLHARKAGWLSSWLLHFSNVVGGVIIAFAWWGVNMLGVGLHSYGFTSGRDALDMFYWSEAVLCVLFIILHYRALRRVDVR
>CP033388.1|QAT92576.1|2721141_2721717_-|rubrerythrin-family-protein
MKSIKGTETEKNLLKAFAGESEARNRYTYFAGVAKKAGYEQIAAIFLETADNEKEHAKVFFKLLKDACIEVTHAVCTAPLESTEDCLLAAAAGEHDEWSDMYPAFAEVADREGFPAIAETFRKIASVEQHHEARYLKLAENVREGRVFAKEKEIQWKCRNCGYVHTGSTAPKVCPACAHPQAFFEELADNF
>CP033388.1|QAT92577.1|2721801_2722023_+|hypothetical-protein
MCISGKTYGSFLIWENYRHTRFCCPPIRAGSKTASRETGRNPYRSIRPKHEPDHLTPPVQTVKLNEKNLKLHP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP033388_1	1.1\|327386\|31\|CP033388\|CRISPRCasFinder	327386-327416	31	CP033388.1	26472-26502	1	0.968

1. spacer 1.1|327386|31|CP033388|CRISPRCasFinder matches to position: 26472-26502, mismatch: 1, identity: 0.968

agaagggaggccagcagggagaaagcaagta	CRISPR spacer
agaagagaggccagcagggagaaagcaagta	Protospacer
*****.*************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP033388_4	4.7\|2707597\|37\|CP033388\|CRT	2707597-2707633	37	NZ_AP021899	Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence	21419-21455	5	0.865
CP033388_2	2.5\|2638235\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638235-2638264	30	NZ_CP013038	Clostridium perfringens strain JP838 plasmid pJFP838E, complete sequence	13557-13586	6	0.8
CP033388_2	2.5\|2638235\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638235-2638264	30	NZ_CP013045	Clostridium perfringens strain JP55 plasmid pJFP55K, complete sequence	12960-12989	6	0.8
CP033388_2	2.6\|2638301\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638301-2638330	30	MK967385	Gordonia phage SheckWes, complete genome	31881-31910	6	0.8
CP033388_2	2.10\|2638565\|30\|CP033388\|CRISPRCasFinder,CRT	2638565-2638594	30	MK967385	Gordonia phage SheckWes, complete genome	31881-31910	6	0.8
CP033388_2	2.11\|2638631\|30\|CP033388\|CRISPRCasFinder,CRT	2638631-2638660	30	MN131137	Aeromonas phage D6, complete genome	174099-174128	6	0.8
CP033388_2	2.11\|2638631\|30\|CP033388\|CRISPRCasFinder,CRT	2638631-2638660	30	MK838116	Aeromonas phage LAh10, complete genome	120376-120405	6	0.8
CP033388_2	2.5\|2638235\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638235-2638264	30	KY065495	Streptococcus phage IPP58, complete genome	9006-9035	7	0.767
CP033388_2	2.5\|2638235\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638235-2638264	30	KY065485	Streptococcus phage IPP45, complete genome	8110-8139	7	0.767
CP033388_2	2.5\|2638235\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638235-2638264	30	KY065499	Streptococcus phage IPP63, complete genome	9761-9790	7	0.767
CP033388_2	2.5\|2638235\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638235-2638264	30	KY065498	Streptococcus phage IPP62, complete genome	8276-8305	7	0.767
CP033388_2	2.5\|2638235\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638235-2638264	30	KY065494	Streptococcus phage IPP57, complete genome	9006-9035	7	0.767
CP033388_2	2.6\|2638301\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638301-2638330	30	MT776810	Gordonia phage BigChungus, complete genome	31822-31851	7	0.767
CP033388_2	2.6\|2638301\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638301-2638330	30	MN586015	Gordonia phage Lauer, complete genome	33223-33252	7	0.767
CP033388_2	2.6\|2638301\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638301-2638330	30	MT776808	Gordonia phage Feastonyeet, complete genome	31822-31851	7	0.767
CP033388_2	2.6\|2638301\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638301-2638330	30	MN062716	Gordonia phage Mayweather, complete genome	33291-33320	7	0.767
CP033388_2	2.10\|2638565\|30\|CP033388\|CRISPRCasFinder,CRT	2638565-2638594	30	MT776810	Gordonia phage BigChungus, complete genome	31822-31851	7	0.767
CP033388_2	2.10\|2638565\|30\|CP033388\|CRISPRCasFinder,CRT	2638565-2638594	30	MN586015	Gordonia phage Lauer, complete genome	33223-33252	7	0.767
CP033388_2	2.10\|2638565\|30\|CP033388\|CRISPRCasFinder,CRT	2638565-2638594	30	MT776808	Gordonia phage Feastonyeet, complete genome	31822-31851	7	0.767
CP033388_2	2.10\|2638565\|30\|CP033388\|CRISPRCasFinder,CRT	2638565-2638594	30	MN062716	Gordonia phage Mayweather, complete genome	33291-33320	7	0.767
CP033388_3	3.1\|2706900\|28\|CP033388\|PILER-CR	2706900-2706927	28	NZ_CP014310	Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence	421743-421770	7	0.75
CP033388_2	2.6\|2638301\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638301-2638330	30	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	584116-584145	8	0.733
CP033388_2	2.10\|2638565\|30\|CP033388\|CRISPRCasFinder,CRT	2638565-2638594	30	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	584116-584145	8	0.733
CP033388_2	2.2\|2638038\|30\|CP033388\|CRISPRCasFinder,CRT	2638038-2638067	30	NZ_CP024314	Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence	1498720-1498749	9	0.7
CP033388_2	2.8\|2638433\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638433-2638462	30	NZ_CP047143	Lactobacillus sp. C25 plasmid unnamed, complete sequence	124199-124228	9	0.7
CP033388_2	2.8\|2638433\|30\|CP033388\|CRISPRCasFinder,CRT,PILER-CR	2638433-2638462	30	NZ_CP014235	Moraxella osloensis strain CCUG 350 plasmid unnamed4, complete sequence	16468-16497	9	0.7
CP033388_4	4.16\|2707860\|32\|CP033388\|CRISPRCasFinder	2707860-2707891	32	NC_011892	Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence	118881-118912	9	0.719
CP033388_4	4.15\|2707858\|34\|CP033388\|PILER-CR	2707858-2707891	34	NC_011892	Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence	118879-118912	10	0.706
CP033388_4	4.16\|2707860\|32\|CP033388\|CRISPRCasFinder	2707860-2707891	32	NC_013859	Azospirillum sp. B510 plasmid pAB510e, complete sequence	136565-136596	10	0.688
CP033388_4	4.16\|2707860\|32\|CP033388\|CRISPRCasFinder	2707860-2707891	32	NC_013857	Azospirillum sp. B510 plasmid pAB510c, complete sequence	248360-248391	11	0.656

1. spacer 4.7|2707597|37|CP033388|CRT matches to NZ_AP021899 (Akkermansia muciniphila strain JCM 30893 plasmid pJ30893, complete sequence) position: , mismatch: 5, identity: 0.865

cgacagcgcagcaggccatccgcgaaaccctgcgcca	CRISPR spacer
aggaagcgcagcgggccatccgcgaagccctgcgcca	Protospacer
 *. ********.*************.**********

2. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013038 (Clostridium perfringens strain JP838 plasmid pJFP838E, complete sequence) position: , mismatch: 6, identity: 0.8

ttgaataattacaccactctacaaaagtat	CRISPR spacer
ctggataatttcaccactctacaaaataac	Protospacer
.**.****** ***************  *.

3. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP013045 (Clostridium perfringens strain JP55 plasmid pJFP55K, complete sequence) position: , mismatch: 6, identity: 0.8

ttgaataattacaccactctacaaaagtat	CRISPR spacer
ctggataatttcaccactctacaaaataac	Protospacer
.**.****** ***************  *.

4. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to MK967385 (Gordonia phage SheckWes, complete genome) position: , mismatch: 6, identity: 0.8

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgctt	Protospacer
*.********.** ***********   **

5. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to MK967385 (Gordonia phage SheckWes, complete genome) position: , mismatch: 6, identity: 0.8

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgctt	Protospacer
*.********.** ***********   **

6. spacer 2.11|2638631|30|CP033388|CRISPRCasFinder,CRT matches to MN131137 (Aeromonas phage D6, complete genome) position: , mismatch: 6, identity: 0.8

-caaaatgcaacgaccgcatgaaggctatcg	CRISPR spacer
acatcac-caacatccgcatgaaggctatcg	Protospacer
 **  *. ****. *****************

7. spacer 2.11|2638631|30|CP033388|CRISPRCasFinder,CRT matches to MK838116 (Aeromonas phage LAh10, complete genome) position: , mismatch: 6, identity: 0.8

-caaaatgcaacgaccgcatgaaggctatcg	CRISPR spacer
acatcac-caacatccgcatgaaggctatcg	Protospacer
 **  *. ****. *****************

8. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to KY065495 (Streptococcus phage IPP58, complete genome) position: , mismatch: 7, identity: 0.767

ttgaataattacaccactctacaaaagtat	CRISPR spacer
aaaaataattacatcactctacataaatct	Protospacer
  .**********.********* **.* *

9. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to KY065485 (Streptococcus phage IPP45, complete genome) position: , mismatch: 7, identity: 0.767

ttgaataattacaccactctacaaaagtat	CRISPR spacer
agaaataattacatcactctacataaatct	Protospacer
  .**********.********* **.* *

10. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to KY065499 (Streptococcus phage IPP63, complete genome) position: , mismatch: 7, identity: 0.767

ttgaataattacaccactctacaaaagtat	CRISPR spacer
aaaaataattacatcactctacataaatct	Protospacer
  .**********.********* **.* *

11. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to KY065498 (Streptococcus phage IPP62, complete genome) position: , mismatch: 7, identity: 0.767

ttgaataattacaccactctacaaaagtat	CRISPR spacer
agaaataattacatcactctacataaatct	Protospacer
  .**********.********* **.* *

12. spacer 2.5|2638235|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to KY065494 (Streptococcus phage IPP57, complete genome) position: , mismatch: 7, identity: 0.767

ttgaataattacaccactctacaaaagtat	CRISPR spacer
aaaaataattacatcactctacataaatct	Protospacer
  .**********.********* **.* *

13. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to MT776810 (Gordonia phage BigChungus, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

14. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to MN586015 (Gordonia phage Lauer, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

15. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to MT776808 (Gordonia phage Feastonyeet, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

16. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to MN062716 (Gordonia phage Mayweather, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

17. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to MT776810 (Gordonia phage BigChungus, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

18. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to MN586015 (Gordonia phage Lauer, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

19. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to MT776808 (Gordonia phage Feastonyeet, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

20. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to MN062716 (Gordonia phage Mayweather, complete genome) position: , mismatch: 7, identity: 0.767

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
cgggcgagttgatcgcctgacgctccgcct	Protospacer
*.********.** ***********   .*

21. spacer 3.1|2706900|28|CP033388|PILER-CR matches to NZ_CP014310 (Burkholderia sp. PAMC 26561 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.75

gggaggggaaataacatggacg-cgttgc	CRISPR spacer
tggagggcaaataacatggacgatacta-	Protospacer
 ****** ************** ...*.

22. spacer 2.6|2638301|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 8, identity: 0.733

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
tcggcgcgttgatggcctgacgctcggcga	Protospacer
. **** ***.***************

23. spacer 2.10|2638565|30|CP033388|CRISPRCasFinder,CRT matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 8, identity: 0.733

caggcgagttaatggcctgacgctcgcatt	CRISPR spacer
tcggcgcgttgatggcctgacgctcggcga	Protospacer
. **** ***.***************

24. spacer 2.2|2638038|30|CP033388|CRISPRCasFinder,CRT matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 9, identity: 0.7

agttattggcaaacgccgtagcgttcgttt	CRISPR spacer
gcagactgtcaaacgccgtagcgttcgcgc	Protospacer
.   *.** ******************. .

25. spacer 2.8|2638433|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP047143 (Lactobacillus sp. C25 plasmid unnamed, complete sequence) position: , mismatch: 9, identity: 0.7

ccgccaagcaccttaagtctatatatgact	CRISPR spacer
tcataggcgaccttaagtctatatatgtct	Protospacer
.*.. ..  ****************** **

26. spacer 2.8|2638433|30|CP033388|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP014235 (Moraxella osloensis strain CCUG 350 plasmid unnamed4, complete sequence) position: , mismatch: 9, identity: 0.7

ccgccaagcaccttaagtctatatatgact	CRISPR spacer
gcgccaagcaccttaactctattaccagca	Protospacer
 *************** *****   ...*

27. spacer 4.16|2707860|32|CP033388|CRISPRCasFinder matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 9, identity: 0.719

ttgccgacggaggcgtccgccccgagaagacc	CRISPR spacer
ggcaggacggcggcgtccgccccgagcagcgc	Protospacer
     ***** *************** **  *

28. spacer 4.15|2707858|34|CP033388|PILER-CR matches to NC_011892 (Methylobacterium nodulans ORS 2060 plasmid pMNOD01, complete sequence) position: , mismatch: 10, identity: 0.706

gcttgccgacggaggcgtccgccccgagaagacc	CRISPR spacer
ggggcaggacggcggcgtccgccccgagcagcgc	Protospacer
*      ***** *************** **  *

29. spacer 4.16|2707860|32|CP033388|CRISPRCasFinder matches to NC_013859 (Azospirillum sp. B510 plasmid pAB510e, complete sequence) position: , mismatch: 10, identity: 0.688

ttgccgacggaggcgtccgccccgagaagacc	CRISPR spacer
gtggcggcggaggcgtccgccccggcgctggc	Protospacer
 ** **.*****************. .  . *

30. spacer 4.16|2707860|32|CP033388|CRISPRCasFinder matches to NC_013857 (Azospirillum sp. B510 plasmid pAB510c, complete sequence) position: , mismatch: 11, identity: 0.656

ttgccgacggaggcgtccgccccgagaagacc	CRISPR spacer
gggcagacggaggcgtccggcccgatgccggt	Protospacer
  ** ************** ***** .  . .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage