CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035368	Haemophilus parainfluenzae strain LC_1315_18 chromosome, complete genome	1 crisprs	DEDDh,cas14j,DinG,cas3	0	1	3	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP035368_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035368_1

722203-722372

TypeV

Consensus_repeat	Method
GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAATCC	PILER-CR

2 spacers

cas14j

The CRISPR arrays of CP035368_1

>merge|CP035368|1|722203-722372|PILER-CR
GTAATAACACCCTTTTTCATTTCGCAGTGCTATAATCCGCACTTTTAGCGGTAGCAGATATGCCGCGTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAATCACATTCTTCTACCTTGCAACGGTGTTCTGGTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAATCC

>CP035368|1|1|722203-722372|PILER-CR
GTAATAACACCCTTTTTCATTTCGCAGTGCTATAATCC	GCACTTTTAGCGGTAGCAGATATGCCGC
GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAATCA	CATTCTTCTACCTTGCAACGGTGTTCTG
GTTGTAGCTCCCTTTTTCATTTCGCAGTGCTATAATCC

Protein	Signature genes	Signature genes Name	Protein_function
CP035368.1\|QAT95084.1\|718300_719776_+\|ribonuclease-G	unknown	unknown	gnl\|CDD\|183285
CP035368.1\|QAT95096.1\|732311_733106_+\|tRNA-pseudouridine(38-40)-synthase-TruA	unknown	unknown	gnl\|CDD\|234577
CP035368.1\|QAT95078.1\|708631_712081_+\|acyl-[ACP]--phospholipid-O-acyltransferase	unknown	unknown	gnl\|CDD\|236315
CP035368.1\|QAT95082.1\|715703_716669_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	unknown	unknown	gnl\|CDD\|237898
CP035368.1\|QAT95088.1\|726153_726759_-\|DedA-family-protein	unknown	unknown	gnl\|CDD\|223659
CP035368.1\|QAT95097.1\|733171_734062_+\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	unknown	unknown	gnl\|CDD\|235547
CP035368.1\|QAT95085.1\|719823_721221_-\|MATE-family-efflux-transporter	unknown	unknown	gnl\|CDD\|234981
CP035368.1\|QAT95092.1\|728383_728812_-\|CopG-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|374224
CP035368.1\|QAT95083.1\|716668_718183_-\|sodium/proline-symporter-PutP	unknown	unknown	gnl\|CDD\|273981
CP035368.1\|QAT95091.1\|727930_728383_+\|DUF1367-family-protein	unknown	unknown	gnl\|CDD\|369209
CP035368.1\|QAT95094.1\|729454_730201_+\|hypothetical-protein	unknown	unknown	unknown
CP035368.1\|QAT95080.1\|713669_714563_+\|transcriptional-regulator-GcvA	unknown	unknown	gnl\|CDD\|182990
CP035368.1\|QAT95089.1\|726985_727273_+\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|180318
CP035368.1\|QAT95095.1\|730779_731916_+\|transposase	cas14j	-	gnl\|CDD\|223747
CP035368.1\|QAT95086.1\|721266_721881_+\|riboflavin-synthase-subunit-alpha	unknown	unknown	gnl\|CDD\|183846
CP035368.1\|QAT95079.1\|712148_713180_-\|branched-chain-amino-acid-aminotransferase	unknown	unknown	gnl\|CDD\|237363
CP035368.1\|QAT95090.1\|727421_727778_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|271181
CP035368.1\|QAT95081.1\|714555_715644_+\|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM	unknown	unknown	gnl\|CDD\|236971
CP035368.1\|QAT95093.1\|728842_729028_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	unknown	unknown	gnl\|CDD\|377942
CP035368.1\|QAT95087.1\|721909_722185_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP035368.1\|QAT95084.1\|718300_719776_+\|ribonuclease-G	gnl\|CDD\|183285	PRK11712, PRK11712, ribonuclease G; Provisional.	0
CP035368.1\|QAT95096.1\|732311_733106_+\|tRNA-pseudouridine(38-40)-synthase-TruA	gnl\|CDD\|234577	PRK00021, truA, tRNA pseudouridine(38-40) synthase TruA.	2.18437e-147
CP035368.1\|QAT95078.1\|708631_712081_+\|acyl-[ACP]--phospholipid-O-acyltransferase	gnl\|CDD\|236315	PRK08633, PRK08633, 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated.	0
CP035368.1\|QAT95082.1\|715703_716669_-\|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB	gnl\|CDD\|237898	PRK15068, PRK15068, tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB.	0
CP035368.1\|QAT95088.1\|726153_726759_-\|DedA-family-protein	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	7.06472e-44
CP035368.1\|QAT95097.1\|733171_734062_+\|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta	gnl\|CDD\|235547	PRK05654, PRK05654, acetyl-CoA carboxylase carboxyltransferase subunit beta.	0
CP035368.1\|QAT95085.1\|719823_721221_-\|MATE-family-efflux-transporter	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
CP035368.1\|QAT95092.1\|728383_728812_-\|CopG-family-transcriptional-regulator	gnl\|CDD\|374224	pfam15919, HicB_lk_antitox, HicB_like antitoxin of bacterial toxin-antitoxin system. This is a family of HicB-like antitoxins.	1.18482e-28
CP035368.1\|QAT95083.1\|716668_718183_-\|sodium/proline-symporter-PutP	gnl\|CDD\|273981	TIGR02121, Osmoregulated_proline_transporter, sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores. [Transport and binding proteins, Amino acids, peptides and amines].	0
CP035368.1\|QAT95091.1\|727930_728383_+\|DUF1367-family-protein	gnl\|CDD\|369209	pfam07105, DUF1367, Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical phage proteins of around 200 residues in length. The function of this family is unknown. Some proteins are annotated as IrsA (intracellular response to stress).	2.34997e-18
CP035368.1\|QAT95080.1\|713669_714563_+\|transcriptional-regulator-GcvA	gnl\|CDD\|182990	PRK11139, PRK11139, DNA-binding transcriptional activator GcvA; Provisional.	1.20646e-176
CP035368.1\|QAT95089.1\|726985_727273_+\|50S-ribosomal-protein-L25	gnl\|CDD\|180318	PRK05943, PRK05943, 50S ribosomal protein L25; Reviewed.	8.06345e-54
CP035368.1\|QAT95095.1\|730779_731916_+\|transposase	gnl\|CDD\|223747	COG0675, COG0675, Transposase and inactivated derivatives [DNA replication, recombination, and repair].	7.55058e-50
CP035368.1\|QAT95086.1\|721266_721881_+\|riboflavin-synthase-subunit-alpha	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	3.1842e-115
CP035368.1\|QAT95079.1\|712148_713180_-\|branched-chain-amino-acid-aminotransferase	gnl\|CDD\|237363	PRK13357, PRK13357, branched-chain amino acid aminotransferase; Provisional.	0
CP035368.1\|QAT95090.1\|727421_727778_-\|hypothetical-protein	gnl\|CDD\|271181	cd00800, INT_Lambda_C, C-terminal catalytic domain of Lambda integrase, a tyrosine-based site-specific recombinase. Lambda-type integrases catalyze site-specific integration and excision of temperate bacteriophages and other mobile genetic elements to and from the bacterial host chromosome. They are tyrosine-based site-specific recombinase and belong to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The phage lambda integrase can bridge two different and well-separated DNA sequences called arm- and core-sites. The C-terminal domain binds, cleaves and re-ligates DNA strands at the core-sites, while the N-terminal domain is largely responsible for high-affinity binding to the arm-type sites.	1.36078e-12
CP035368.1\|QAT95081.1\|714555_715644_+\|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM	gnl\|CDD\|236971	PRK11760, PRK11760, putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional.	0
CP035368.1\|QAT95093.1\|728842_729028_-\|type-II-toxin-antitoxin-system-HicA-family-toxin	gnl\|CDD\|377942	pfam07927, HicA_toxin, HicA toxin of bacterial toxin-antitoxin,. HicA_toxin is a bacterial family of toxins that act as mRNA interferases. The antitoxin that neutralizes this is family HicB, pfam15919.	2.18541e-12

>CP035368.1|QAT95087.1|721909_722185_+|hypothetical-protein
MFKDEIALIRFLGREFIVVFNVFFLFPLSIILVLIGVIHGVIWNVLLGIVFTYLVFLVLFRILIYFLYKKWEREHQKKMQEENKVKYIIIK
>CP035368.1|QAT95086.1|721266_721881_+|riboflavin-synthase-subunit-alpha
MFTGIVQGIAQIHAIKDSDNFRTQIVKLPAEMRKGLEIGASVANNGVCLTVTEIHDELVSFDLMQETLRITNLGNLKAGDFVNIERAMQMGAEIGGHILSGHVYCTASVSQIIESENNRQVWFKLPTKDVMKYILTKGFIAIDGISLTIGEVKGDEFCVNLIPETLHRTLIGKRQIGDLVNIEIDPQTQAIVDTVENYLKARGI
>CP035368.1|QAT95085.1|719823_721221_-|MATE-family-efflux-transporter
MNSRLFSQYRIDIQKLIRIATPIGLAQLAQTGMGTVDVIMAGRVSSVDVGGVGIGASIWLPLVLFGQGLLLALPPTISYLNGSGQRHRIAHQVRQGLWISFLVMIPLVLIIYHNDFILQFMNMDTHMADVTMNYLRAMVWGLPAYLLLINFRCLNDGIAKTKPAMVITFMGLMLNIPLNYMFIYGKFGAPALGGVGCGVATAIVNWAMAILMITYSAKNYNERSLKVFEKIIEKPDIKTLKKLTALGLPIAIALCSEVSLFALSSLLLSPLGADVVASHQIALNTSAVAFMFPMSIAMAATILVAQELGNHAPQKAKIMAHAAIILGLIAASVLALVIWVFSAEIAALIVGDNATVIALSGSLLAMAAIYQFSDSVQVVVSGILRGYKDTKIILYITLLAYWGVGIPVGYILSRTDWIVPSIGAKGFWVAFIIALTIAATLLFIRMRKIQSQPDEAIIQQLERLK
>CP035368.1|QAT95084.1|718300_719776_+|ribonuclease-G
MNSVELLMNVTPNETRVALVETGVLKEVHIERQAKRGIVGNIYKGRVTRVLPGMQSAFVDIGLEKAAFLHASDIVSHTECVDVNEQKQFRAKSISELVREGQDIVVQVVKDPLGTKGARLTTDITLPSRYLVFMPENSHVGVSQRIESEEERARLKALVEPFCDELGGFIIRTATEGATEEELRQDAEFLKRLWRKVLERKGKYPTRSKIYGEPALPQRILRDFIGANLEKIHIDSKLCFNEVKEFTDEFMPELSEKLMLYTGSQPIFDIYGVERGIQNALEKRVNLKSGGYLIIEQTEAMTTIDINTGAFVGHRNLDETIFNTNIEATKAIAQQLQLRNLGGIIIIDFIDMQTDEHRNRVIESLEDALSKDRVKTNVNGFTQLGLVEMTRKRTRESLEHVLCDECPTCQGRGRVKTVETVCYEIMREIIRVNHLFSSEQFVVYASPAVADYLIKEESHGLLPEVEMFISKQVQVKTEQYYNQEQFDVVVM
>CP035368.1|QAT95083.1|716668_718183_-|sodium/proline-symporter-PutP
MFGLDPTLITFSIYIFGMILIGVLAYYYTNNLSDYILGGRKLGSFVTAMSAGASDMSGWLLMGLPGAVYVSGLVEGWIAIGLILGAYFNWLLVAGRLRIYTEFNNNALTLPEYFYHRFGTKHHLLKIVSASIILVFFTIYCASGVVAGAKLFQNLFSVDYSTAIWYGALATIIYTFIGGFLAVSWTDTIQATLMIFALILTPLFIFLSLGDASQFTESLHQAEIAASKDFTDLFSSTTPLGLLSLAAWGLGYFGQPHILARFMAAYSVKSLIKARRISMTWMVICLAGAIGIGFFGIPYFFANPDVAGIVNNEPEQVFIELSKLLFNPWIAGILLSAILAAVMSTLSAQLLISSSSITEDFYKGFIRPKAAEKELVWLGRAMVLVIAGIAIWIAQDENSKVLKLVEFAWAGFGSAFGPVVLFSLFWKRMTSSAALIGMIVGATVVFSWKYVIPKTSEWFNVYEMIPGFTLASLAIIVVSLLSAEPENEVKETFEKAEKAYKEAK
>CP035368.1|QAT95082.1|715703_716669_-|tRNA-5-methoxyuridine(34)/uridine-5-oxyacetic-acid(34)-synthase-CmoB
MIDFRPFYQQIATTNLSAWLETLPLQLKEWEKQTHGDYAKWSKIVDFLPDLQADTIDLKNAVKSDRTSPLLEGEKQRIIHHLKQLMPWRKGPYHLFDIHVDCEWRSDFKWDRVLPHLAPLKDRTILDVGCGSGYHMWRMVGEDAKMVVGIDPTELFLCQFEAVRKLLNNDRRANLIPLGIEEMQPLAAFDTVFSMGVLYHRKSPLDHLTQLKNQLVKGGELVLETLVVDGDVNTVLVPSDRYAKMKNVYFIPSVAALINWLEKVGFTNVRCVDVATTTLEEQRKTDWLENESLIDFLDPNDHSKTIEGYQAPTRAVILANK
>CP035368.1|QAT95081.1|714555_715644_+|23S-rRNA-(cytidine(2498)-2'-O)-methyltransferase-RlmM
MNKLALYCRIGFEKEVAAEITDRASERGVFGFARVVENSGYVIFECYQPGDADRLAREIPFNRLIFARQMIVVSDFLENLDPQDRISPILAQYKRIAEDINLKQAVELFVETADTNEAKALSTFCRKFTVPLRQALKKQGWLQGKPNAKRGQILHCFFTQPNCCYVGYSYLGNNSTHFMGIPRLKFPADAPSRSTLKLEEAILTFIPRHEESKRLNENMVGVDLGACPGGWTYQLVKRGLFVYAVDHGKMVASLHDTGRIEHCPEDGFKFQPPKRKHIDWLVCDMVEQPSRIANLIGKWLINGWCRETIFNLKLPMKKRYQEVMLCLENLAVMLAEKELEFDIQAKHLYHDREEITVHIALK
>CP035368.1|QAT95080.1|713669_714563_+|transcriptional-regulator-GcvA
MYKRLPPLNSLKSFESAARHLSFTKAADELCVTQAAVSHQIKLLEDFLGVELFIRKNRSLELTEFGKAYFIDINKILRKLNEATERLLTLKAEPHLTISVPQTFGIQWLVPHLSDFNKQHPEIEVRLKGVDQDEGLLNKEIDIAIYYGKGDWENLQVDRLVEENLVILAAPSLLEKTAVHTPDDLKKHTLIHTHTRDNWQAMADYLKLDDLNIQQGPLFSHTFMALQAAVHGQGIALSNRILAQQEIENGHLQIVLPTELRDPKSFYVVNHLDHLDDEQIQAFRTWIKDSIKLGKHE
>CP035368.1|QAT95079.1|712148_713180_-|branched-chain-amino-acid-aminotransferase
MKDLDWNNLGFSYIKTDYRFIAHWKDGKWDEGKLTTDNMLHIHEGSTAIHYGQQCFEGLKAYRCKDGSINLFRPDQNAKRMQHTSDRLLMPQVPTELFIRACKEVVKANQEWLGPYGSGATLYLRPFLFGTGANIGVKTAPEFIFSVFCCPVGAYFKGGLAPSNFITTDYDRAAPMGTGGVKVGGNYAASLLPHELAAEAGTPERKFADAIYLDPKTHTKIEEVGAANFFGITKDNKFITPASDSILPSITKYSLLHIAKERLGMKAIEGDVYIDQLDQFAEAGACGTAAVITPVGGIQHKGKFHVFYSETEVGPVTRKLYNELTGIQFGDVEAPEGWIVKVE
>CP035368.1|QAT95078.1|708631_712081_+|acyl-[ACP]--phospholipid-O-acyltransferase
MKLLKYAGFVPYLAIAFINASVDLAHKITIQNVLLKSFSGESLVVLTALINAMILLPFIFLFSPSAFINDKFSRTNVIRYSSLAAVVISAGILLSYMTGMFAISFVLTLILAAQSAVYSPAKYSIIKSIVGTENIGMANGVIQALTIVAILFSSFAFSFFFEAHYVASDDPNEVLQSVWVIGVALVLLSALEAYFAFKIPFFKQEAENTDGQFDMRKYLSLGYLKDNVRTLKADQNIWLSVIGLSLFWGVSQIIVAAFPAHYKAMFNEDNAIVIQAILAVSGIGLALGSYLAGRASRLHIELGIVPLGALGICASLFFLTFAQSGVVLALCSFVFGFSGGLLIVPLNATIQYFAPEKISGKIMAGNNFVQNVFMVVFLLLSIVFVQLNVSTQSLFLVTSATCFAASLYTMSKVPHLFTRLFLLFALKASYRFHVDGLKNLPQSGGVLLLGNHISWIDWLVLQAASPRAIKFVMYRPIYNKWYLTWFFRIFKVIPIGGGSSRESIETIREYLARGEVVVLFPEGHISYNGQINEFQKGFEHVLKDLENVTTVPFYLRGLWGSSFSRADSFYKNLTKRQGKREILVAFGKPIHGFIDATAMKQKVLELSFSVWEKVMSKRKPLMHHWLNSAKSNLFKEATVDAQGTKLNNLKFIAAVLMFVKTLKSALGNEKNVGVLLPSSSIGAIINMTLMVMGKVPVNLNYTLSPEVMEKALKKANISQVITSEKFLDKLNAKGFDFSQVVADKALFMENLGKSITKANKVRSFLTAFLAPQWWIKLRYFADVSLEDNATILFSSGSEGDPKGIELSHKNLLTNIKQIGELLNFHKDDVILNSLPIFHSFGLTVTTLLPLCEGIKMVSVADPTDGATVGKMCARHRVSILFGTSTFFRLYVRNKKFHPLMLQNVRMVIAGAEKLKADVKEAFKLKFGLDIYEGYGATETAPVASVNMPNLLDPETLQEFTFNQAGTVGMPLPGTIIKIVDPESLQELPVGEDGLILIGGGQVMKGYLNAPEKTAEVIVEIDGVRYYKTGDKGHIDHNGFITIVDRYSRFAKVGGEMISLGSVEEKLSQVFDEENQFVAVALSDDKKGESIVLLIKSALSLDEINERIKGLNVPPIMLPSQVFLVDEIPMLGSGKVDFKGAKNLAMSLVK
>CP035368.1|QAT95088.1|726153_726759_-|DedA-family-protein
MEFLISFFTDYGYWAVLFVLIICGFGVPIPEDITLVSGGVIAGLYPESVNSHLMLLVSMIGVLAGDSCMYWLGRIYGTRILRFRPMRKVITLQRLKMVREKFAQYGNRVLFVARFLPGLRAPIYMVSGITRRVSYTRFVLIDFCAAIISVPIWVYLGEFGARNLDWLHEQIQKGQIVIYILVGALAVFLFWKWKKAKKQAK
>CP035368.1|QAT95089.1|726985_727273_+|50S-ribosomal-protein-L25
MAFKFNAEVRQAQGKGASRRLRHNGQIPAIIYGGSEAPVSIILNHDELNNAQVHDSFYSDVITLVVEGKEVAVKVQAMQRHPFKPKLVHIDFKRA
>CP035368.1|QAT95090.1|727421_727778_-|hypothetical-protein
MPSTLKRVAIKVIGKLKEIIDKRITEENQFLFTNKWGRKLERRSLTDYFKDTRNAASIKYKELAEEINQVQLRDLRAKAATDLSLMIDDERARKQLGHTSARTTQHYIRKEKPLNPTK
>CP035368.1|QAT95091.1|727930_728383_+|DUF1367-family-protein
MQLEMLKIEGGMLAPLDDMQAEVLMKFKTGEQYQVEIKKARNPAFHRKVFAFFKFCFDHWAADKTEWEHFDERKQFDTFRKHLTVLAGFYESTYNIKGNLRIEAQSLSYGNMEQAEFESCYKALISAAIKHIFNDTTDENTLNQLYAFFR
>CP035368.1|QAT95092.1|728383_728812_-|CopG-family-transcriptional-regulator
MLFTIGIETPTNENEAYGITVPALFTEEYSCFSAADTLEEIPTQVTDAIHSILEMMFEDGIDINALQDKGYRHYQTQEDFNYCDTWLLLDVDISAYQGKRHRINISLPEYLIKRIDSRVASNPIYKDRSHFLAIASQKELRQ
>CP035368.1|QAT95093.1|728842_729028_-|type-II-toxin-antitoxin-system-HicA-family-toxin
MRSSDLIKELKNAGCTFVRHGKGDHQIWQSPITGKTFPIPHPKQHVPIGTLRSIKKSAGLL
>CP035368.1|QAT95094.1|729454_730201_+|hypothetical-protein
MFDQLLYLSRVPQKAQKKTSPIVANRGADVILDNADEDAPDNRLALYQEQVVAIEALNYFTEWCETKEDELEDGEGFGDRLLGLMVAVADDNQDGELDDDEQELVTIGLNAVYDYMISKGVSEENAASLLDDFDNDLARNIHQFILGKLPQGEDEMQDEMDALIFSTEENEPMLDSAISMEIITDAAYRKVFAIRNGKKLRINKRISGKVRLSAKQRQAIRKAQRRANTGAAKMRRLKSFRMRRRAGL
>CP035368.1|QAT95095.1|730779_731916_+|transposase
MQLRKAFKFEIMPNGEQIRIIKQFCGCSRFVFNRALACQNEQYEQDNSVKFSYTKIANLLPHWKKELLWLKDCHSQVLQQSLKDLESAFKNFFQKRSDFPKFKKKGLKESFRFPQGCKLEQQNNRLYLPKIGWIRYRNSRDVIGEIKNVTVSQKCGRFFASIQTEFEYEIPTHQGGEIGIDMGVARFATLSSGKYFEPLNAFKTHKGKLAKLQRRLKNKVKFSQNWQKLKAKIAKLHHKIANCRKDFLHQTSSKISKNHAMIYVEDLQVLNMSKSAKGTAKEHGKNVKQKSGLNRAILDQSWFEFRRQLDYKTQWLGGFLVAVPPQNTSRTCPCCGNTAKENRQTQADFECVECGYTENADVVGALNILEHGRAIVQA
>CP035368.1|QAT95096.1|732311_733106_+|tRNA-pseudouridine(38-40)-synthase-TruA
MKIALGIEYNGKQYCGWQRQEKVRSVQEELEKALSFVANEKIEVFCAGRTDSGVHGTGQVVHFETKAVRPEKAWAFGTNANLPDDISVSWAKVVDDEFHARFSATARRYRYILYCNKLRSAILPEGITHCHLELDEEKMHQAGQFLLGENDFSSFRAAQCQSNTPWRNVHHLNVMRKGQYIIVDIQANAFVHHMVRNIVGSLIEVGAGNQPVEWMKWLLEQKDRKLAAPTAKPEGLYLVNVIYPEKFAIPQKNLGPLFLEDNLI
>CP035368.1|QAT95097.1|733171_734062_+|acetyl-CoA-carboxylase,-carboxyltransferase-subunit-beta
MSWIDKIFSKGTSSSTSRKANVPEGVWTKCTSCEQVLYGEEVKRNLYVCPKCGHHMRIDARERLLALLDEGSSQELSADLEPKDILKFKDLKKYKDRITAAQKETGEKDALITMTGTLYNMPVVVAASNFSFMGGSMGSVVGSKFVKAAEKAIELNCPFVCFSASGGARMQEALFSLMQMAKTSAVLAKMREKGVPFISVLTDPTLGGVSASFAMLGDVNIAEPKALIGFAGPRVIEQTVREKLPEGFQRSEFLLEKGAIDMIVKRSEMRSTLGNLLSKLTNQPSPFVEVEVVEHE

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035368_1	1.1\|722241\|28\|CP035368\|PILER-CR	722241-722268	28	CP031730	Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence	37208-37235	6	0.786

1. spacer 1.1|722241|28|CP035368|PILER-CR matches to CP031730 (Stenotrophomonas rhizophila strain GA1 plasmid unnamed1, complete sequence) position: , mismatch: 6, identity: 0.786

gcacttttagcggtagcagatatgccgc	CRISPR spacer
gaactttgagcggtagaagatatgcaat	Protospacer
* ***** ******** ******** ..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

780822 : 834750

Mannheimia_phage(48.57%)

transposase,head,terminase,capsid,plate,tail,tRNA,lysis,portal

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT96340.1\|780822_781473_+	transcriptional regulator	A0A0M3LPF9	Mannheimia_phage	3.3e-26	37.6
QAT96341.1\|781585_782305_+	WYL domain-containing protein	NA	NA	NA	NA
QAT95140.1\|782301_782532_+	excalibur calcium-binding domain-containing protein	Q19UP2	Mannheimia_phage	8.3e-09	43.4
QAT95141.1\|782534_783203_+	hypothetical protein	NA	NA	NA	NA
QAT95142.1\|783236_783509_+	hypothetical protein	NA	NA	NA	NA
QAT95143.1\|783531_784725_-	phage late control D family protein	R9QBT3	Mannheimia_phage	2.2e-105	52.5
QAT95144.1\|784724_785162_-\|tail	phage tail protein	A0A0M3LQ18	Mannheimia_phage	2.0e-40	57.4
QAT95145.1\|785490_785637_-\|tail	GpE family phage tail protein	E5E3Q0	Burkholderia_phage	2.2e-07	65.0
QAT95146.1\|785636_785936_-\|tail	phage tail assembly protein	A0A0F7LBN9	Escherichia_phage	2.6e-10	41.8
QAT95147.1\|786021_786528_-\|tail	phage major tail tube protein	Q19UP8	Mannheimia_phage	3.2e-53	60.1
QAT95148.1\|786531_787716_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	7.3e-101	47.9
QAT95149.1\|788164_788383_-	hypothetical protein	NA	NA	NA	NA
QAT95150.1\|788433_789279_-	hypothetical protein	F6MIM2	Haemophilus_phage	1.4e-117	72.4
QAT95151.1\|789335_789455_-	Com family DNA-binding transcriptional regulator	NA	NA	NA	NA
QAT95152.1\|789629_790118_-	enoyl-CoA hydratase	F6MIM0	Haemophilus_phage	2.5e-47	57.4
QAT95153.1\|790110_790866_-	hypothetical protein	Q94MX9	Haemophilus_virus	8.7e-31	53.2
QAT95154.1\|790876_791788_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	5.0e-41	54.4
QAT95155.1\|791788_792355_-\|tail	phage tail protein I	A0A218M4J3	Erwinia_phage	3.7e-26	37.5
QAT95156.1\|792347_793262_-\|plate	baseplate assembly protein	Q19UQ5	Mannheimia_phage	7.7e-74	49.3
QAT95157.1\|793258_793594_-\|plate	baseplate assembly protein W	Q19UQ6	Mannheimia_phage	2.6e-19	56.6
QAT95158.1\|793593_794139_-\|plate	phage baseplate assembly protein V	A0A0M3LPY9	Mannheimia_phage	1.5e-40	61.0
QAT95159.1\|797339_797687_+	hypothetical protein	NA	NA	NA	NA
QAT95160.1\|797687_798149_-	phage virion morphogenesis protein	Q19UR2	Mannheimia_phage	2.2e-21	42.0
QAT95161.1\|798148_798619_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	4.3e-28	47.1
QAT95162.1\|798584_798848_-	hypothetical protein	NA	NA	NA	NA
QAT95163.1\|798844_799060_-	TraR/DksA family transcriptional regulator	A0A0M3LS11	Mannheimia_phage	1.4e-10	47.9
QAT96342.1\|799056_799272_-	hypothetical protein	NA	NA	NA	NA
QAT95164.1\|799234_799585_-	chemotaxis protein	NA	NA	NA	NA
QAT95165.1\|799569_800088_-	lysozyme	A0A0M3LPQ1	Mannheimia_phage	7.3e-37	46.9
QAT95166.1\|800080_800302_-\|lysis	lysis protein	NA	NA	NA	NA
QAT95167.1\|800303_800513_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	7.8e-06	39.1
QAT95168.1\|800512_801019_-\|head	head completion/stabilization protein	A0A0M3LPQ0	Mannheimia_phage	1.3e-33	45.6
QAT95169.1\|801143_801806_-\|terminase	terminase	Q19US0	Mannheimia_phage	5.4e-45	45.9
QAT95170.1\|801805_802837_-\|capsid	phage major capsid protein, P2 family	Q19UT3	Mannheimia_phage	9.9e-102	56.1
QAT95171.1\|802847_803666_-\|capsid	GPO family capsid scaffolding protein	Q19UT4	Mannheimia_phage	1.3e-67	51.1
QAT95172.1\|803830_805606_+\|terminase	terminase	A0A0M3LRV4	Mannheimia_phage	1.9e-217	65.1
QAT95173.1\|805615_806626_+\|portal	phage portal protein	Q19UT6	Mannheimia_phage	9.6e-118	60.7
QAT95174.1\|807308_807887_+	flavodoxin family protein	NA	NA	NA	NA
QAT95175.1\|808194_808404_+	rod shape-determining protein MreD	NA	NA	NA	NA
QAT95176.1\|808425_809715_+	DUF2931 family protein	NA	NA	NA	NA
QAT95177.1\|810762_811389_+	CadD family cadmium resistance transporter	NA	NA	NA	NA
QAT95178.1\|811497_811716_-	hypothetical protein	NA	NA	NA	NA
QAT95179.1\|812895_813432_+	elongation factor P hydroxylase	NA	NA	NA	NA
QAT95180.1\|813529_814612_+	peptide chain release factor 1	W8EDB3	Pseudomonas_phage	1.3e-08	42.2
QAT95181.1\|814634_815105_+	RDD family protein	NA	NA	NA	NA
QAT95182.1\|815104_815983_+	peptide chain release factor N(5)-glutamine methyltransferase	NA	NA	NA	NA
QAT95183.1\|815982_816786_+	tetratricopeptide repeat protein	NA	NA	NA	NA
QAT95184.1\|816798_817653_+	3-deoxy-8-phosphooctulonate synthase	E3T537	Cafeteria_roenbergensis_virus	2.4e-37	35.6
QAT95185.1\|817719_818667_+	2-hydroxyacid dehydrogenase	M1H9J0	Paramecium_bursaria_Chlorella_virus	2.0e-24	30.8
QAT95186.1\|818666_819848_+	lipoprotein-releasing ABC transporter permease subunit	NA	NA	NA	NA
QAT95187.1\|819851_820535_+	lipoprotein-releasing ABC transporter ATP-binding protein LolD	G9BWD6	Planktothrix_phage	1.3e-38	41.0
QAT95188.1\|820534_821785_+	lipoprotein-releasing ABC transporter permease subunit LolE	NA	NA	NA	NA
QAT95189.1\|821844_822255_-	DUF1043 family protein	NA	NA	NA	NA
QAT95190.1\|822344_822695_-	RidA family protein	NA	NA	NA	NA
QAT95191.1\|822806_823523_+	hypothetical protein	NA	NA	NA	NA
QAT95192.1\|823524_824199_+	sel1 repeat family protein	NA	NA	NA	NA
QAT95193.1\|824274_824898_+	hypothetical protein	NA	NA	NA	NA
QAT95194.1\|824839_825430_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	7.2e-57	62.8
QAT95195.1\|825474_827484_-\|tRNA	bifunctional tRNA (5-methylaminomethyl-2-thiouridine)(34)-methyltransferase MnmD/FAD-dependent 5-carboxymethylaminomethyl-2-thiouridine(34) oxidoreductase MnmC	NA	NA	NA	NA
QAT95196.1\|827666_828887_+	beta-ketoacyl-ACP synthase I	NA	NA	NA	NA
QAT95197.1\|829257_830982_+	acetolactate synthase 3 large subunit	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	3.6e-56	29.4
QAT95198.1\|830981_831473_+	acetolactate synthase small subunit	NA	NA	NA	NA
QAT95199.1\|831702_832368_-	DUF484 family protein	NA	NA	NA	NA
QAT95200.1\|832432_833731_-	adenylosuccinate synthase	W5S5V7	Pithovirus	4.8e-69	36.1
QAT95201.1\|833862_834333_-\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	5.8e-49	61.9
QAT95202.1\|834393_834750_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1267392 : 1275673

Bacillus_virus(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT95571.1\|1267392_1268040_+	GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.7e-43	44.8
QAT95572.1\|1268085_1268229_-	hypothetical protein	NA	NA	NA	NA
QAT95573.1\|1268397_1269084_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	6.0e-55	50.2
QAT95574.1\|1269076_1269502_+	6-carboxytetrahydropterin synthase QueD	A0A1U9WRB3	Streptococcus_virus	3.0e-20	41.8
QAT95575.1\|1269507_1270137_+	7-carboxy-7-deazaguanine synthase QueE	A0A1V0DYC7	Dinoroseobacter_phage	4.1e-10	33.6
QAT95576.1\|1270297_1272196_+	DNA topoisomerase IV subunit B	G3M9Z3	Bacillus_virus	5.1e-96	35.9
QAT95577.1\|1272212_1273406_+	nitrite reductase, copper-containing	NA	NA	NA	NA
QAT95578.1\|1273417_1275673_+	DNA topoisomerase IV subunit A	G3M9Z5	Bacillus_virus	5.7e-86	36.6

DBSCAN-SWA_3

1563690 : 1579012

Vibrio_phage(37.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAT95834.1\|1563690_1564707_+	nucleoid-associated protein YejK	A0A1V0E8C0	Vibrio_phage	7.3e-65	41.3
QAT95835.1\|1564776_1565190_+	outer membrane protein assembly factor BamE	NA	NA	NA	NA
QAT95836.1\|1565253_1565955_+	response regulator	W8CYM9	Bacillus_phage	2.4e-30	36.2
QAT95837.1\|1565954_1567358_+	envelope stress sensor histidine kinase CpxA	NA	NA	NA	NA
QAT95838.1\|1567395_1569564_-	heavy metal translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.7e-189	52.5
QAT95839.1\|1569550_1569760_-	copper chaperone	A0A218MNH0	uncultured_virus	6.1e-11	49.3
QAT95840.1\|1569840_1570227_+	Cu(I)-responsive transcriptional regulator	NA	NA	NA	NA
QAT95841.1\|1570229_1570547_-	met regulon transcriptional regulator MetJ	NA	NA	NA	NA
QAT95842.1\|1570678_1571566_-	UTP--glucose-1-phosphate uridylyltransferase GalU	A0A127AW70	Bacillus_phage	6.2e-60	46.9
QAT95843.1\|1571788_1571980_-	carbon storage regulator	A0A2I7RT00	Vibrio_phage	1.9e-11	60.8
QAT95844.1\|1572058_1574683_-\|tRNA	alanine--tRNA ligase	A0A1V0SK38	Klosneuvirus	7.9e-79	38.0
QAT95845.1\|1574870_1575296_-	universal stress protein UspA	NA	NA	NA	NA
QAT95846.1\|1575400_1576693_-	Xaa-Pro aminopeptidase	NA	NA	NA	NA
QAT95847.1\|1576705_1577254_-	YecA family protein	NA	NA	NA	NA
QAT95848.1\|1577365_1579012_-	chaperonin GroEL	A0A2I7SAK5	Vibrio_phage	1.4e-190	68.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage