CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number
CP034389	Escherichia coli strain RS571 chromosome, complete genome	5 crisprs	RT,csa3,PD-DExK,cas3,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,DEDDh,c2c9_V-U4,DinG	2	18	13
CP034390	Escherichia coli strain RS571 plasmid pRS571-MCR-1.1, complete sequence	0 crisprs	NA	0	0	2
CP034392	Escherichia coli strain RS571 plasmid punnamed4	0 crisprs	NA	0	0	0
CP034391	Escherichia coli strain RS571 plasmid punnamed3	0 crisprs	NA	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP034389_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034389_1

1115278-1116590

Unclear

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

21 spacers

The CRISPR arrays of CP034389_1

>merge|CP034389|1|1115278-1116590|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTCAGCGGCAAAAAATACGATCTCGCCGGTGTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAAACCGGCATCAGATATAAGCTGTTCTCTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTGACACAATCTCAACTTGCTGAATTAACAGTGTTCCCCGCGCCAGCGGGGATAAACCGAATGGCGCTGCCGATCGACAAATGGGACCTGGGTGTTCCCCGCGCCAGCGGGGATAAACCTATCGGGTTCCCTTTTAATGTGATTCCGAATTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTTTAACTCCATTTATCAAAGCGCAATTAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGATAGCTGATAGCTCTCTCAATAATTAACGGATGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCAGCCAGCGCCCGGCGCGCCTCTTTAACCTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCCTTAATTACAACGACACCACTGGAAAAATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGCTGGCATCAGATTTCTAAGGAATACGACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGATTTAGCCCTATCTCAACGTTCAGGTGTTTTGGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGGAGCCAGTGCTAACGATATCGCGGCCGCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGAAATGTGGCCACACCGTGTTAATGTATGGGTGTTCCCCGCGCCAGCGGGGATAAACCATTCCGGCTACTTTTGTTGCTCCCTGCTCATCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATATTTACTTGGATGCGTCGGACATTGAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCCGCGTACATCAACGCAGCAGCAAGCGCATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTAGTTCAGGATGCATAATGAAATACCCGACCGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAACGAAAACGCAGAGCGAGGAACGGATATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGCAACATTTACCGCCGGTCAAAAACAGGACGTGTTCCCCGCGCCAGCGGGGATGAACCA

>CP034389|1|1|1115278-1116589|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTCAGCGGCAAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	TATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCCTTAATTACAACGACACCACTGGAAAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGCTGGCATCAGATTTCTAAGGAATACGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTTAGCCCTATCTCAACGTTCAGGTGTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGGGAGCCAGTGCTAACGATATCGCGGCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTGAAATGTGGCCACACCGTGTTAATGTATGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	ATTCCGGCTACTTTTGTTGCTCCCTGCTCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAATATTTACTTGGATGCGTCGGACATTGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCCGCGTACATCAACGCAGCAGCAAGCGCATA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTAGTTCAGGATGCATAATGAAATACCCGACC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCAACGAAAACGCAGAGCGAGGAACGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACC

>CP034389|1|1|1115278-1116590|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCAGCGGCAAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCT	ATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTAATTACAACGACACCACTGGAAAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGGCATCAGATTTCTAAGGAATACGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAAATGTGGCCACACCGTGTTAATGTATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATTTACTTGGATGCGTCGGACATTGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCGCGTACATCAACGCAGCAGCAAGCGCATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAGTTCAGGATGCATAATGAAATACCCGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGAAAACGCAGAGCGAGGAACGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACCA

>CP034389|1|1|1115278-1116590|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCAGCGGCAAAAAATACGATCTCGCCGGTGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAAACCGGCATCAGATATAAGCTGTTCTCTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGACACAATCTCAACTTGCTGAATTAACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATGGCGCTGCCGATCGACAAATGGGACCTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCT	ATCGGGTTCCCTTTTAATGTGATTCCGAATTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTTTAACTCCATTTATCAAAGCGCAATTAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATAGCTGATAGCTCTCTCAATAATTAACGGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCAGCCAGCGCCCGGCGCGCCTCTTTAACCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCCTTAATTACAACGACACCACTGGAAAAATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCGCCAGGTGTTTTCTTTTCCCGGTCAGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGCTGGCATCAGATTTCTAAGGAATACGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTTAGCCCTATCTCAACGTTCAGGTGTTTTG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGGAGCCAGTGCTAACGATATCGCGGCCGCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGAAATGTGGCCACACCGTGTTAATGTATGG
GTGTTCCCCGCGCCAGCGGGGATAAACCA	TTCCGGCTACTTTTGTTGCTCCCTGCTCATCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATATTTACTTGGATGCGTCGGACATTGAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCCGGAGTCTTCCCGGTGTTCAGGTAGTTAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCCGCGTACATCAACGCAGCAGCAAGCGCATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTAGTTCAGGATGCATAATGAAATACCCGACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAACGAAAACGCAGAGCGAGGAACGGATATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGCAACATTTACCGCCGGTCAAAAACAGGAC
GTGTTCCCCGCGCCAGCGGGGATGAACCA

Protein	Signature genes	Signature genes Name	Protein_function
CP034389.1\|QAU19091.1\|1120328_1121114_+\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187605
CP034389.1\|QAU15564.1\|1126672_1127944_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182194
CP034389.1\|QAU15559.1\|1122731_1124069_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340929
CP034389.1\|QAU15558.1\|1121183_1122638_+\|FAD-binding-oxidoreductase	unknown	unknown	gnl\|CDD\|223354
CP034389.1\|QAU15555.1\|1114266_1114938_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP034389.1\|QAU15553.1\|1111742_1113041_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
CP034389.1\|QAU15547.1\|1104683_1105985_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP034389.1\|QAU15561.1\|1124822_1125683_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|224936
CP034389.1\|QAU15546.1\|1101870_1104627_-\|signal-transduction-histidine-kinase	unknown	unknown	gnl\|CDD\|236848
CP034389.1\|QAU15551.1\|1108999_1109791_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP034389.1\|QAU15549.1\|1108344_1108593_+\|MazF-MazE-toxin-antitoxin-system-antitoxin-MazE	unknown	unknown	gnl\|CDD\|182082
CP034389.1\|QAU15557.1\|1118732_1120010_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|349949
CP034389.1\|QAU15556.1\|1117227_1118706_-\|sugar-kinase	unknown	unknown	gnl\|CDD\|212662
CP034389.1\|QAU15560.1\|1124046_1124826_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	unknown	unknown	gnl\|CDD\|224997
CP034389.1\|QAU15563.1\|1126421_1126682_-\|ferredoxin-family-protein	unknown	unknown	gnl\|CDD\|225289
CP034389.1\|QAU15554.1\|1113100_1113973_-\|YgcG-family-protein	unknown	unknown	gnl\|CDD\|224429
CP034389.1\|QAU15552.1\|1110018_1111656_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP034389.1\|QAU15562.1\|1125829_1126405_-\|glycerol-3-phosphate-responsive-antiterminator	unknown	unknown	gnl\|CDD\|224865
CP034389.1\|QAU15548.1\|1106032_1108267_+\|GTP-pyrophosphokinase	unknown	unknown	gnl\|CDD\|182797
CP034389.1\|QAU15550.1\|1108592_1108928_+\|endoribonuclease-MazF	unknown	unknown	gnl\|CDD\|182138

Protein	Function_ID	Function_description	E-value
CP034389.1\|QAU19091.1\|1120328_1121114_+\|SDR-family-oxidoreductase	gnl\|CDD\|187605	cd05347, Ga5DH-like_SDR_c, gluconate 5-dehydrogenase (Ga5DH)-like, classical (c) SDRs. Ga5DH catalyzes the NADP-dependent conversion of carbon source D-gluconate and 5-keto-D-gluconate. This SDR subgroup has a classical Gly-rich NAD(P)-binding motif and a conserved active site tetrad pattern. However, it has been proposed that Arg104 (Streptococcus suis Ga5DH numbering), as well as an active site Ca2+, play a critical role in catalysis. In addition to Ga5DHs this subgroup contains Erwinia chrysanthemi KduD which is involved in pectin degradation, and is a putative 2,5-diketo-3-deoxygluconate dehydrogenase. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107,15-PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	8.62537e-140
CP034389.1\|QAU15564.1\|1126672_1127944_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182194	PRK10015, PRK10015, oxidoreductase; Provisional.	3.94463e-124
CP034389.1\|QAU15559.1\|1122731_1124069_+\|MFS-transporter	gnl\|CDD\|340929	cd17371, MFS_MucK, Cis,cis-muconate transport protein and similar proteins of the Major Facilitator Superfamily. This subfamily is composed of Acinetobacter sp. Cis,cis-muconate transport protein (MucK), Escherichia coli putative sialic acid transporter 1, and similar proteins. MucK functions in the uptake of muconate and allows Acinetobacter calcoaceticus ADP1 (BD413) to grow on exogenous cis,cis-muconate as the sole carbon source. The MucK subfamily belongs to the Metazoan Synaptic Vesicle Glycoprotein 2 (SV2) and related small molecule transporter family (SV2-like) of the Major Facilitator Superfamily (MFS) of membrane transport proteins. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.88688e-50
CP034389.1\|QAU15558.1\|1121183_1122638_+\|FAD-binding-oxidoreductase	gnl\|CDD\|223354	COG0277, GlcD, FAD/FMN-containing dehydrogenases [Energy production and conversion].	2.79726e-81
CP034389.1\|QAU15555.1\|1114266_1114938_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	3.98248e-155
CP034389.1\|QAU15553.1\|1111742_1113041_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP034389.1\|QAU15547.1\|1104683_1105985_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP034389.1\|QAU15561.1\|1124822_1125683_+\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|224936	COG2025, FixB, Electron transfer flavoprotein, alpha subunit [Energy production and conversion].	2.43837e-88
CP034389.1\|QAU15546.1\|1101870_1104627_-\|signal-transduction-histidine-kinase	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP034389.1\|QAU15551.1\|1108999_1109791_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	6.52379e-160
CP034389.1\|QAU15549.1\|1108344_1108593_+\|MazF-MazE-toxin-antitoxin-system-antitoxin-MazE	gnl\|CDD\|182082	PRK09798, PRK09798, MazF-MazE toxin-antitoxin system antitoxin MazE.	6.19513e-48
CP034389.1\|QAU15557.1\|1118732_1120010_-\|MFS-transporter	gnl\|CDD\|349949	cd06174, MFS, Major Facilitator Superfamily. The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters. MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3-phosphate transporter), LacY (lactose permease), and EmrD (multidrug transporter), MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement. Bacterial members function primarily for nutrient uptake, and as drug-efflux pumps to confer antibiotic resistance. Some MFS proteins have medical significance in humans such as the glucose transporter Glut4, which is impaired in type II diabetes, and glucose-6-phosphate transporter (G6PT), which causes glycogen storage disease when mutated.	1.87501e-29
CP034389.1\|QAU15556.1\|1117227_1118706_-\|sugar-kinase	gnl\|CDD\|212662	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins. This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain.	8.58462e-109
CP034389.1\|QAU15560.1\|1124046_1124826_+\|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein	gnl\|CDD\|224997	COG2086, FixA, Electron transfer flavoprotein, beta subunit [Energy production and conversion].	4.70543e-60
CP034389.1\|QAU15563.1\|1126421_1126682_-\|ferredoxin-family-protein	gnl\|CDD\|225289	COG2440, FixX, Ferredoxin-like protein [Energy production and conversion].	3.07968e-40
CP034389.1\|QAU15554.1\|1113100_1113973_-\|YgcG-family-protein	gnl\|CDD\|224429	COG1512, COG1512, Beta-propeller domains of methanol dehydrogenase type [General function prediction only].	2.57168e-95
CP034389.1\|QAU15552.1\|1110018_1111656_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP034389.1\|QAU15562.1\|1125829_1126405_-\|glycerol-3-phosphate-responsive-antiterminator	gnl\|CDD\|224865	COG1954, GlpP, Glycerol-3-phosphate responsive antiterminator (mRNA-binding) [Transcription].	1.33799e-87
CP034389.1\|QAU15548.1\|1106032_1108267_+\|GTP-pyrophosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP034389.1\|QAU15550.1\|1108592_1108928_+\|endoribonuclease-MazF	gnl\|CDD\|182138	PRK09907, PRK09907, endoribonuclease MazF.	1.22533e-74

>CP034389.1|QAU15555.1|1114266_1114938_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWEKLEDREVSLFSILAKTKESDKWGAASSEDLLAVIGRQGYTARHVVITGGEPCIHDLLPLTDLLEKNGFSCQIETSGTHEVRCTPNTWVTVSPKLNMRGGYEVLSQALERANEIKHPVGRVRDIEALDELLATLTDDKPRVIALQPISQKDDATRLCIETCIARNWRLSMQTHKYLNIA
>CP034389.1|QAU15554.1|1113100_1113973_-|YgcG-family-protein
MRYFILIFTFVCSFVAAQPTIVPQLQQQVTDLTSSLNSQEKKELTRKLESIFNNTQVQIAVLIIPTTKDETIEQYATRVFNNWRLGDAKRNDGILIIVAWSDRTVRIQVGYGLEEKVTDALAGDIIRSNMIPAFKQQKLAKGLELAIIALNNQLTSQHQYSANPSESESASSSDYYYFAIFWVFAVMFFPFWFFHQGSNFCRACKSSVCISAIYLLDLFLFSDKTFSIAVFFFFFTFTTIMVFTCLCVLQKKASGRSYHSDNSGSGGGSSGGGFSGGGGSSGGGGASGRW
>CP034389.1|QAU15553.1|1111742_1113041_+|phosphopyruvate-hydratase
MSKIVKIIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVAAVNGPIAQALIGKDAKDQAGIDKIMIDLDGTENKSKFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKAKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP034389.1|QAU15552.1|1110018_1111656_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQMAVEIGREHTLFMHLTLVPYMAASGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISLKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIFEEANPVSEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVSVNIKLIDSQDVETRGVEILKGLDAILVPGGFGYRGVEGMITTARFARENNIPYLGICLGMQVALIDYARHVANMENANSTEFVPDCKYPVVALITEWRDENGNVEVRSEKSDLGGTMRLGAQQCQLVDDSLVRQLYNAPTIVERHRHRYEVNNMLLKQIEDAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAASEFQKRQAK
>CP034389.1|QAU15551.1|1108999_1109791_+|nucleoside-triphosphate-pyrophosphohydrolase
MNQIDRLLTIMQRLRDPENGCPWDKEQTFATIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFADSSAENSSEVLARWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCANVGFDWTTLGPVVDKVYEEIDEVMYEAQQAVVDQAKLEEEMGDLLFATVNLARHLGTKAEIALQKANEKFERRFREVERIVAARGLEMTGVDLETMEEVWQQVKRQEIDL
>CP034389.1|QAU15550.1|1108592_1108928_+|endoribonuclease-MazF
MVSRYVPDTGDLIWVDFDPTKGSEQAGHRPAVVLSPFMYNNKTGMCLCVPCTTQSKGYPFEVVLSGQERDGVALADQVKSIAWRARGATKKGTVAPEELQLIKAKINVLIG
>CP034389.1|QAU15549.1|1108344_1108593_+|MazF-MazE-toxin-antitoxin-system-antitoxin-MazE
MIHSSVKRWGNSPAVRIPATLMQALNLNIDDEVKIDLVDGKLIIEPVRKEPVFTLAELVNDITPENLHENIDWGEPKDKEVW
>CP034389.1|QAU15548.1|1106032_1108267_+|GTP-pyrophosphokinase
MVAVRSAHINKAGEFDPEKWIASLGITSQKSCECLAETWAYCLQQTQGHPDASLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSVVNLIHGVRDMAAIRQLKATHTDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKDAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPTEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKAEGVKAEVYGRPKHIYSIWRKMQKKNLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAAAGGARSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNILAGRQILDDELEHLGISLKEAEKHLLPRYNFNDVDELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKSYTPQNRSKDNGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVDAVWGESYSAGYSLVVRVVANDRSGLLRDITTILANEKVNVLGVASRSDTKQQLATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGS
>CP034389.1|QAU15547.1|1104683_1105985_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRTTTRQIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEVTVTEDKKQYARAKVVRRLSDSPERETPRCPHFGVCGGCQQQHASVDLQQRSKSAALARLMKHEVSEVIADVPWGYRRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQAMRHLGHVELVQATSGTLMILRHTAPLSSADREKLECFSHSEGLDLYLAPDSEILETVSGEMPWYDSNGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLATQAASVVGVEGVPALVEKGQQNARLNGLHNVTFYHENLEEDVTKQPWAKNGFDKVLLDPARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHLESMVLFSRVK
>CP034389.1|QAU15546.1|1101870_1104627_-|signal-transduction-histidine-kinase
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSTEYGMSLQNRESIGQLISVLHRRHSDIVRAISVYDENNRLFVTSNFHLDPSSMQLGSNVPFPRQLTVTRDGDIMILRTPIISESYSPDESPSSDAKNSQNMLGYIALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELTPTQRDHLNTIERSANNLLAIINDVLDFSKLEAGKLILESIPFPLRSTLDEVVTLLAHSSHDKGLELTLNIKSDVPDNVIGDPLRLQQIITNLVGNAIKFTENGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNIIIEGPSTQCLAGKRLAYVEPNSAAAQCTLDILSETPLEVVYSPTFSALPPAHYDMMLLGIAVTFREPLTMQHERLAKAVSMTDFLMLALPCHAQVNAEKLKQDGIGACLLKPLTPTRLLPALTEFCHHKQNTLLPVTDESKLAMTVMAVDDNPANLKLIGALLEDMVQHVELCDSGHQAVERAKQMPFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLGAGMSDYLAKPIEEERLHNLLLRYKPGSGISSRVVTPEVNEIVVNPNATLDWQLALRQAAGKTDLARDMLQMLLDFLPEVRNKVEEQLVGENPEGLVDLIHKLHGSCGYSGVPRMKNLCQLIEQQLRSGTKEEDLEPELLELLDEMDNVAREASKILG
>CP034389.1|QAU15556.1|1117227_1118706_-|sugar-kinase
MSKKYIIGIDGGSQSTKVVMYDLEGNVVCEGKGLLQPMHTPDADTAEHPDDDLWASLCFAGHDLMSQFAGNKEDIVGIGLGSIRCCRALLKADGTPAAPLISWQDARVTRPYEHTNPDVAYVTSFSGYLTHRLTGEFKDNIANYFGQWPVDYKTWAWSEDAAVMEKFNIPRHMLFDVQMPGTVLGHITPQAALATHFPAGLPVVCTTSDKPVEALGAGLLDDETAVISLGTYIALMMNGKALPKDPVAYWPIMSSIPQTLLYEGYGIRKGMWTVSWLRDMLGESLIQDAKAQDLSPEDLLNKKASCVPPGCNGLMTVLDWLTNPWEPYKRGIMIGFDSSMDYAWIYRSILESVALTLKNNYDNMCNEMNHFAKHVIITGGGSNSDLFMQIFADVFNLPARRNAINGCASLGAAINTAVGLGLYPDYATAVDKMVRVKDIFMPVESNAKRYDAMNKGIFKDLTKHTDVILKKSYEVMHGELGNEDSIQSWSNA
>CP034389.1|QAU15557.1|1118732_1120010_-|MFS-transporter
MQHNSYRRWITLAIISFSGGVSFDLAYLRYIYQIPMAKFMGFSNTEIGLIMSTFGIAAIILYAPSGVIADKFSHRKMITSAMIITGLLGLLMATYPPLWVMLCIQVAFAITTILMLWSVSIKAASLLGDHSEQGKIMGWMEGLRGVGVMSLAVFTMWVFSRFAPDDSASLKTVIIIYSVVYILLGILCWFFVSDNNNLRSANNEEKQSFQLSDILAVLRISTTWYCSMVIFGVFTIYAILSYSTNYLTEMYGMSLVAASYMGIVINKIFRALCGPLGGIITTYSKVKSPTRVIQILSIIGLLALTALLVTNSNPQSVAMGIGLILLLGFTCYASRGLYWACPGEARTPSYIMGTTVGICSVIGFLPDVFVYPIIGHWQDTLPAAEAYRNMWLMGMAALAMVIIFTFLLFQKIRTADSAPAMASSK
>CP034389.1|QAU19091.1|1120328_1121114_+|SDR-family-oxidoreductase
MSIESLNAFSMDFFSLKGKTAIVTGGNSGLGQAFAMALAKAGANVFIPSFVKDNGETKEMIEKQGVEVDFMQVDITAEGAPQKIIAACCERFGTVDILVNNAGICKLNKVLDFGRADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLASPASNYVNGHLLVVDGGYLVR
>CP034389.1|QAU15558.1|1121183_1122638_+|FAD-binding-oxidoreductase
MSLSRAAIVDQLKEIVGADRVITDETVLKKNSIDRFRKFPDIHGIYTLPIPAAVVKLGSTEQVSRVLNFMNAHKINGVPRTGASATEGGLETVVENSVVLDGSAMNQIINIDIENMQATAQCGVPLEVLENALREKGYTTGHSPQSKPLAQMGGLVATRSIGQFSTLYGAIEDMVVGLEAVLADGTVTRIKNVPRRAAGPDIRHIIIGNEGALCYITEVTVKIFKFTPENNLFYGYILEDMKTGFNILREIMVEGYRPSIARLYDVEDGTQHFTHFADGKCVLIFMAEGNPRIAKATGEGIAEIVARYPQCQRVDSKLIETWFNHLNWGPDKVAAERVQILKTGNMGFTTEVSGCWSCIHEIYESVINRIRTEFPHADDITMLGGHSSHSYQNGTNMYFVYDYNVVDCKPEEEIDKYHNPLNKIICEETIRLGGSMVHHHGIGKHRVHWSKLEHGSAWTLLEGLKKQFDPNGIMNTGTIYPIEK
>CP034389.1|QAU15559.1|1122731_1124069_+|MFS-transporter
MNTSPVRMDDLPLNRFHCRIAALTFGAHLTDGYVLGVIGYAIIQLTPAMQLTPFMAGMIGGSALLGLFLGSLVLGWISDHIGRQKIFTFSFLLITLASFLQFFATTPEHLIGLRILIGIGLGGDYSVGHTLLAEFSPRRHRGILLGAFSVVWTVGYVLASIAGHHFISENPEAWRWLLASAALPALLITLLRWGTPESPRWLLRQGRFAEAHAIVHRYLGPHVLLGDEVAAATHKHIKTLFSSRYWRRTAFNSVFFVCLVIPWFVIYTWLPTIAQTIGLEDALTASLMLNALLIVGALLGLVLTHLLAHRKFLLGSFLLLAATLVVMACLPSGSSLTLLLFVLFSTTISAVSNLVGILPAESFPTDIRSLGVGFATAMSRLGAAVSTGLLPWVLAQWGMQATLLLLAAVLLVGFVVTWLWAPETKALPLVAAGNVGGANEHSVSV
>CP034389.1|QAU15560.1|1124046_1124826_+|electron-transfer-flavoprotein-subunit-beta/FixA-family-protein
MNILLAFKAEPDAGMLAEKEWQAAAQGNIGPDVSLLRSLLGADEQAAAALLLAQRKNGTPMSLTALSMGDERALHWLRYLMALGFEDAVLLETVADLRFAPEFVARHIAEWQRQNPLDLIITGCQSSEGQNGQTPFLLAEMLGWPCFTQVERFTLDAPFITLEQRTENGLRCCRVRLPAVIAVRQCGEVALPVPGMRQRMAAGKAAIIRKTVAVELPAMQCLHLARAEQRRGATLIDGQTVAEKAQKLWQNYLRQRMQP
>CP034389.1|QAU15561.1|1124822_1125683_+|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNIAIVTINQENAAIASWLAAQDFSGCTLAHWQIEPQPVVAEQVLDALVEQWQRTPADVVLFPPGTFGDELSTRLAWRLHGASICQVTSLDIPTVSVRKSHWGNALTATLQTDKRPLCLSLARQAGADKNATLPSGMQQLNIVPGALPDWLVSLENLKNVTRDPLAEARRVLVVGQGGEADNQEIAMLAEKLGAEVGYSRARVMNGGVDAEKVIGISGHLLAPEVCIVVGASGAAALMAGVCNSKFVVAINHDASAAVFSQADVGVVDDWKVVLEAMVTNIHADCQ
>CP034389.1|QAU15562.1|1125829_1126405_-|glycerol-3-phosphate-responsive-antiterminator
MPLLHLLRQNPVIAAVKDNASLQLAIDSECQFISVLYGNICTISHIVKKIKSAGKYAFIHVDLLEGASNKEVVIQFLKLVTEADGIISTKASMLKAARAEGFFCIHRLFIVDSISFHNIDKQVAQSNPDCIEILPGCMPKVLGWVTEKIRQPLIAGGLVCDEEDARNAINAGVVALSTTNTGVWTLAKKLL
>CP034389.1|QAU15563.1|1126421_1126682_-|ferredoxin-family-protein
MSVARNLWRVADAPHIVPADSVERQTVQWLINACPAGLFSLTPEGDLRIDYRSCLECGTCRLLCDEKTLQQWRYPPSGFGITYRFG
>CP034389.1|QAU15564.1|1126672_1127944_-|FAD-dependent-oxidoreductase
MEDDCDIIIIGAGIAGTACALRCARAGLSVLLLERAEIPGSKNLSGGRLYTQALAELLPQFHLTAPLERRITHESLSLLTPDGATTFSSLQPGGESWSVLRARFDPWLVAEAEKEGVECIPGATVDALYEENGRVCGVICGDDILRACYVVLAEGANSVLAERHGLVTRPAGEAMALGIKEVLSLETSAIEERFHLENNEGAALLFSGGICDDLPGGAFLYTNQQTLSLGIVCPLSSLTQSRVPASELLARFKTHPAVRPLIKNTESLEYGAHLVPEGGLHSMPVQYAGNGWLLLGDALRSCVNTGISVRGMDMALTGAQAAAQTLISACQHREPQNLFALYHHNVERSLLWDVLQRYQHVPALLQRPGWYRAWPALMQDISRDLWDQGDKPVPPLRQLFWRHLRRHGLWHLAGDVIRSLRCL

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Crispr_ID: CP034389_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034389_2

1142136-1142226

TypeI-E

I-E

Consensus_repeat	Method
AGAGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder

1 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP034389_2

>merge|CP034389|2|1142136-1142226|CRISPRCasFinder
AGAGTTCCCCGCGCCAGCGGGGATAAACCGCAAACGTCAGGCGGAAGTGTTCCGGTCATATAGAGTTCCCCGCGCCAGCGGGGATAAACCG

>CP034389|2|2|1142136-1142226|CRISPRCasFinder
AGAGTTCCCCGCGCCAGCGGGGATAAACCG	CAAACGTCAGGCGGAAGTGTTCCGGTCATAT
AGAGTTCCCCGCGCCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP034389.1\|QAU15570.1\|1136461_1137970_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|236613
CP034389.1\|QAU15580.1\|1145933_1146539_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP034389.1\|QAU15573.1\|1139551_1140226_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|273842
CP034389.1\|QAU15583.1\|1147435_1148146_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP034389.1\|QAU15567.1\|1130501_1132214_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP034389.1\|QAU15585.1\|1148621_1149671_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP034389.1\|QAU15586.1\|1149651_1150413_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP034389.1\|QAU15569.1\|1133380_1136047_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|182031
CP034389.1\|QAU15582.1\|1147105_1147417_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP034389.1\|QAU15572.1\|1138457_1139549_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	cd09646_cas7_CAS-I-E	gnl\|CDD\|273843
CP034389.1\|QAU15568.1\|1132287_1133022_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP034389.1\|QAU15581.1\|1146588_1146912_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP034389.1\|QAU15578.1\|1143596_1144505_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP034389.1\|QAU15574.1\|1140212_1140812_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP034389.1\|QAU15584.1\|1148145_1148625_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP034389.1\|QAU15579.1\|1144506_1145934_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP034389.1\|QAU15577.1\|1142307_1143345_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP034389.1\|QAU15576.1\|1141746_1142031_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP034389.1\|QAU15571.1\|1137962_1138445_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|187801
CP034389.1\|QAU15575.1\|1140827_1141745_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693

Protein	Function_ID	Function_description	E-value
CP034389.1\|QAU15570.1\|1136461_1137970_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|236613	PRK09693, PRK09693, Cascade antiviral complex protein; Validated.	0
CP034389.1\|QAU15580.1\|1145933_1146539_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	7.34447e-148
CP034389.1\|QAU15573.1\|1139551_1140226_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|273842	TIGR01868, hypothetical_protein, CRISPR-associated protein Cas5/CasD, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is part of the ECOLI subtype CRISPR/Cas locus, and now characterized as part of the CASCADE complex of that system. It shares a small N-terminal homology region with members of several other CRISPR/Cas subtypes, and we view the families that share this region as being Cas5.	8.37717e-102
CP034389.1\|QAU15583.1\|1147435_1148146_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	4.32778e-121
CP034389.1\|QAU15567.1\|1130501_1132214_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP034389.1\|QAU15585.1\|1148621_1149671_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP034389.1\|QAU15586.1\|1149651_1150413_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.92279e-150
CP034389.1\|QAU15569.1\|1133380_1136047_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|182031	PRK09694, PRK09694, CRISPR-associated helicase/endonuclease Cas3.	0
CP034389.1\|QAU15582.1\|1147105_1147417_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	5.55235e-62
CP034389.1\|QAU15572.1\|1138457_1139549_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	7.42279e-152
CP034389.1\|QAU15568.1\|1132287_1133022_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.62447e-137
CP034389.1\|QAU15581.1\|1146588_1146912_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	1.22003e-52
CP034389.1\|QAU15578.1\|1143596_1144505_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP034389.1\|QAU15574.1\|1140212_1140812_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	4.3792e-101
CP034389.1\|QAU15584.1\|1148145_1148625_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.56248e-104
CP034389.1\|QAU15579.1\|1144506_1145934_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP034389.1\|QAU15577.1\|1142307_1143345_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP034389.1\|QAU15576.1\|1141746_1142031_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.20986e-62
CP034389.1\|QAU15571.1\|1137962_1138445_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187801	cd09670, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	1.51297e-33
CP034389.1\|QAU15575.1\|1140827_1141745_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.75252e-159

>CP034389.1|QAU15576.1|1141746_1142031_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLAIWLLEVRAGVYVGDVSARIREMIWEQISGLAEEGNVVMAWATNTESGFEFQTFGVNRRTPVDLDGLRLVSFLPV
>CP034389.1|QAU15575.1|1140827_1141745_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLAAQVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPARRSVEQLRGIEGSRVRATYVLLAKQYGVKWNGRRYDPKDWEKGDTVNQCISAATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFDTVVPKAFEIARRNPGEPDREVRLACRDIFRSSKTLAKLIPLIEDVLAAGEIQPPAPPEDAQPVAIPLPVSLGDAGHRSS
>CP034389.1|QAU15574.1|1140212_1140812_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSKVIIARAWSRDLYQLHQGLWHLFPNRPDAARDFLFHVEKRNTPEGCHVLLQSAQMPVSTAVATVIKTKQVEFQLQVGVPLYFRLRANPIKTILDNQKRLDSKGNIKRCRVPLIKEAEQIAWLQRKLGNAARVEDVHPISERPQYFSGDGKSGKIQTVCFEGVITINDAPALIDLVQQGIGPAKSMGCGLLSLAPL
>CP034389.1|QAU15573.1|1139551_1140226_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MRSYLILRLAGPMQAWGQPTFEGTRPTGRFPTRSGLLGLLGACLGIQRDDTSSLQALSESVQFAVRCDELILDDRRVSVTGLRDYHTVLGAREDYRGLKSHETIQTWREYLCDASFTVALWLTPHATMVISELEKAVLKPRYTPYLGRRSCPLTHPLFLGTCKASDPQKALLNYEPVGGDIYSEESVTGHYLKFTARDEPMITLPRQFASREWYVIKGGMDVSQ
>CP034389.1|QAU15572.1|1138457_1139549_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MSNFINIHVLISHSPSCLNRDDMNMQKDAIFGGKRRVRISSQSLKRAMRKSDYYAQNIGESSLRTIHLAQLRDVLRQKLGERFDQKIIDKTLALLSGKLVDEAEKISADAVTPWVVGEIAWFCEQVAKAEADNLDDKKLLKVLKEDIAAIRVNLQQGVDIALSGRMATSGMMSELGKVDGAMSIAHAITTHQVDSDIDWFTAVDDLQEQGSAHLGTQEFSSGVFYRYANINLAQLQENLGGASREQALEIATHVVHMLATEVPGAKQRTYAAFNPADMVMVNFSDMPLSMANAFEKAVKAKDGFLQPSIQAFNQYWDRVANGYGLNGAAAQFSLSDVDPITAQVKQMPTLEQLKSWVRNNGEA
>CP034389.1|QAU15571.1|1137962_1138445_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MADEIDAMALYRAWQQLDNGACAQIRRVSEPDELRDIPAFYRLVQPFGWENPRHQQALLRMVFCLSAGKNVIRHQDKKPEQTTGISLGRALANSGRINERRIFQLIRADRTADMVQLRRLLTHAEPVLDWPLMARMLTWWGKRERQQLLEDFVLTTNKNA
>CP034389.1|QAU15570.1|1136461_1137970_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MNLLIDNWIPVRPRNGGEVQIINLQSLYCSRDQWRLSLPRDDMELAALALLVCIGQIIAPAKDDVEFRHRIMNPLTEDEFQQLIAPWIDMFYLNHAEHPFMQTKGVKANDVTPMEKLLAGVSGATNCAFVNQPGQGEALCGGCTAIALFNQANQAPGFGGGFKSGLRGGTPITTFVCGIDLRSTVLLNVLTIPRLQKQFPNELHTENQPTWVKPVKPNESVPASSIGFVRGLFWQPAHIELCDPIGIGKCSCCGQESNLRYTGFLKEKFTFTVNGLWPHPHSPCLVTVKKGEVEEKFLAFTTSAPSWTQISRVVVDKIIQNENGNRVAAVVNQFRNIAPQSPLELIMGGYRNNQASILERRHDVLMFNQGWQQYGNVINEIVTVGLGYKTALRKALYTFAEGFKNKDFKGAGVSVHETAERHFYRQSELLIPDVLANINFSQADEVIADLRDKLHQLCEMLFNQSEAPYAHHPKLISTLALARATLYKHLRELKPQGGPSNG
>CP034389.1|QAU15569.1|1133380_1136047_+|CRISPR-associated-helicase/endonuclease-Cas3
MEPFKYICHYWGKSSKSLTKGNDIHLLIYHCLDVAAVADCWWEQSVVLQNAFCQNEMLSKQMVKAWLLFFIALHDIGKFDIRFQYKSAESWLKLNPATPSLNGPSTQMCRKFNHGAAGLYWFNQDSLSEQSPGDFFSFFDAAPHPYESWFPWVEAVTGHHGFILHSQDQDKSRWEMPASLASYAAQDKQAREEWISVLEALFLTPAGLSINDIPPDCSSLLAGFCSLADWLGSWTTTNTFLFKEDAPSNINALRTYFQDRQQDASRVLELSGLVSNKRCYEGVHALLDNGYQPRQLQVLVDALPAAPGLTVIEAPTGSGKTETALAYAWKLIDQQLADSVIFALPTQATANAMLSRMEANASRLFTSPNLILAHGNSRFNHLFQSIKSRAFTEQGQEEAWVQCCQWLSQSNKKVFLGQIGVCTIDQVLISVLPVKHRFIRGLGIGRSVLIVDEVHAYDTYMNGLLEAVLKAQADVGGSVILLSATLPMKQKQKLLDTYGLHTDPEENNSAYPLINWRGVNGAQRFDLLAHSEQLPPRFSIRPEPIYLADMLPDLRMLERMIVAANAGAQVCLICNLVDVAQLCHQRLKELNNTQVDIDLFHARFTLNDRREKENRVISNFGKNGKRNVGRILVATQVVEQSLDVDFDWLITQHCPADLLFQRLGRLHRHHRKYRPAGFEVPLASVLLPDGEGYGRHEHIYSNVRVMWRTQQHIEELNGASLFFPDAYRQWLDSIYDDAEMDEPEWVIKGMDKYESAECEKRFKARKVLQWAEEYSLQDNDETILAVTRDGEMSLPLLPYLQTSSGKQLLDGQVYEDLSHEQQYEALALNRVNVPFTWKRNFSEVVDEDGVLWLEGKQNQDGWIWQGNNIVITYTRDEGMTRVIPANPK
>CP034389.1|QAU15568.1|1132287_1133022_+|phosphoadenosine-phosphosulfate-reductase
MSKLDLNALNELPKVDRILALAETNAELEKLDAEGRVAWALDNLPGEYVLSSSFGIQAAVSLHLVNQIHPDIPVILTDTGYLFPETYRFIDELTDKLKLNLKVYRATESAAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELNAQTWFAGLRREQSGSRANLPVLAIQRGVFKVLPIIDWNNRTIYQYLQKHGLKYHPLWDEGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP034389.1|QAU15567.1|1130501_1132214_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLTDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAEQKLEPRHAMLLRCRLPGGVITTKQWQAIDKFAGENTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDNWHLTLFIENGRILDYPGRPLKTGLLEIAKIHKGDFRITANQNLIIAGVPESEKAKIEKIAKESGLMNAVTPQRENSMACVSFPTCPLAMAEAERFLPSFIDNIDNLMAKHGVSDEHIVMRVTGCPNGCGRAMLAEVGLVGKAPGRYNLHLGGNRIGTRIPRMYKENITEPEILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDLWD
>CP034389.1|QAU15577.1|1142307_1143345_-|aminopeptidase
MFSALRHRTAALALGVCFILPVHASSPKPGDFANTQARHIATFFPGRMTGTPAEMLSADYIRQQFQQMGYRSDIRTFNSRYIYTARDNRKSWHNVTGSTVIAAHEGKAPQQIIIMAHLDTYAPLSDADADANLGGLTLQGMDDNAAGLGVMLELAERLKNTPTEYGIRFVATSGEEEGKLGAENLLKRMSDTEKKNTLLVINLDNLIVGDKLYFNSGVKTPEAVRKLTRDRALAIARSHGIAATTNPGLNKNYPKGTGCCNDAEVFDKAGIAVLSVEATNWNLGNKDGYQQRSKTPAFPAGNSWHDVRLDNQQHIDKALPGRIERRCRDVMRIILPLVKKLAKAS
>CP034389.1|QAU15578.1|1143596_1144505_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFSNPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYEFRDRTAKAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWHNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMIDDNRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESNAQTLPEIIEEMLVSTTSERQGRVIDRDQAGSMELKKRQGYF
>CP034389.1|QAU15579.1|1144506_1145934_+|sulfate-adenylyltransferase-subunit-CysN
MNTALAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTRQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCELAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYSEETFTRIREDYLTFAGQLPGNLDIRFVPLSALEGDNVASQSESMPWYSGPTLLEVLETVEIQRVVDAQPMRFPVQYVNRPNLDFRGYAGTLASGRVEVGQRVKVLPSGVESNVARIVTFDGDREEAFAGEAITLVLTDEIDISRGDLLLAADEALPAVQSASVDVVWMAEQPLSPGQSYDIKIAGKKTRARVDGIRYQVDINNLTQREVENLPLNGIGLVDLTFDEPLVLDRYQQNPVTGGLILIDRLSNVTVGAGMVHEPVSQATAAPSQFSVFELELNALVRRHFPHWGARDLLGDK
>CP034389.1|QAU15580.1|1145933_1146539_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVQQRELHHGHRGVVLWFTGLSGSGKSTVAGALEEALHKLGVSTYLLDGDNVRHGLCSDLGFSDADRKENIRRVGEVANLMVEAGLVVLTAFISPHRAERQMVRERVGEGRFIEVFVDTPLAICEARDPKGLYKKARAGELRNFTGIDSVYEAPESAEIHLNGEQLVTNLVQQLLDLLRQNDIIRS
>CP034389.1|QAU15581.1|1146588_1146912_+|DUF3561-family-protein
MRNSHNITLTNNDSLTEDEETTWSLPGAVVGFISWLFALAMPMLIYGSNTLFFFIYTWPFFLALMPVAVVVGIALHSLMDGKLRYSIVFTLVTVGIMFGALFMWLLG
>CP034389.1|QAU15582.1|1147105_1147417_+|cell-division-protein-FtsB
MGKLTLLLLAILVWLQYSLWFGKNGIHDYTRVNDDVAAQQATNAKLKARNDQLFAEIDDLNGGQEALEERARNELSMTRPGETFYRLVPDASKRAQSAGQNNR
>CP034389.1|QAU15583.1|1147435_1148146_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MATTHLDVCAVVPAAGFGRRMQTECPKQYLSIGNQTILEHSVHALLAHPRVKHVVIAISPGDSRFAQLPLANHPQITVVDGGDERADSVLAGLKAAGDAQWVLVHDAARPCLHQDDLARLLALSETSRTGGILAAPVRDTMKRAEPGKNAIAHTVDRNGLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPQLVEGRADNIKVTRPEDLALAEFYLTRTIHQENT
>CP034389.1|QAU15584.1|1148145_1148625_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLIKATK
>CP034389.1|QAU15585.1|1148621_1149671_+|tRNA-pseudouridine(13)-synthase-TruD
MIEFDNLTYLHGKPQGTGLLKANPEDFVVVEDLGFEPDGEGEHILVRILKNGCNTRFVADALAKFLKIHSREVSFAGQKDKHAVTEQWLCARVPGKEMPDLSAFQLEGCQVLEYARHKRKLRLGALKGNAFTLVLREVSNRDDVEQRLIDICVKGVPNYFGAQRFGIGGSNLQGALRWAQTNTPVRDRNKRSFWLSAARSALFNQIVAERLKKADVNQVVDGDALQLAGRGSWFVATTEELVELQRRVNDKELMITAALPGSGEWGTQREALAFEQAAVAAETELQALLVREKVEAARRAMLLYPQQLSWNWWDDVTVEIRFWLPAGSFATSVVRELINTTGDYAHIAE
>CP034389.1|QAU15586.1|1149651_1150413_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFENGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLDGHKHYDTAAAVTCSILRALCKEPLRTGRILNINVPDLPLDQIKGIRVTRCGTRHPADQVIPQQDPRGNTLYWIGPPGGKCDAGPGTDFAAVDEGYVSITPLHVDLTAHSAQDVVSDWLNSVGVGTQW

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Crispr_ID: CP034389_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034389_3

2348570-2348693

Orphan

Consensus_repeat	Method
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034389_3

>merge|CP034389|3|2348570-2348693|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTACGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAACGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

>CP034389|3|3|2348570-2348693|CRISPRCasFinder
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA	CGGACGCAGGATGGTGCGTTCAATTGGACTCGAACCAA
CGACCCCCACCATGTCAAGGTGGTGCTCTAACCAACTGAGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP034389.1\|QAU16639.1\|2340656_2341283_+\|ferredoxin-like-protein	unknown	unknown	gnl\|CDD\|182135
CP034389.1\|QAU16647.1\|2349007_2350264_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|137602
CP034389.1\|QAU16656.1\|2359159_2359741_-\|superoxide-dismutase-[Fe]	unknown	unknown	gnl\|CDD\|182534
CP034389.1\|QAU16653.1\|2356265_2357291_-\|PurR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236739
CP034389.1\|QAU16643.1\|2344785_2345571_+\|thiosulfate-reductase-cytochrome-B-subunit	unknown	unknown	gnl\|CDD\|184968
CP034389.1\|QAU16648.1\|2350304_2351678_-\|multidrug-efflux-MATE-transporter-MdtK	unknown	unknown	gnl\|CDD\|234981
CP034389.1\|QAU16651.1\|2354012_2355224_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	unknown	unknown	gnl\|CDD\|182924
CP034389.1\|QAU16642.1\|2344120_2344789_+\|thiosulfate-reductase-electron-transport-protein-PhsB	unknown	unknown	gnl\|CDD\|274451
CP034389.1\|QAU16637.1\|2338022_2339435_-\|pyruvate-kinase-I	unknown	unknown	gnl\|CDD\|181699
CP034389.1\|QAU16638.1\|2339991_2340201_+\|fumarate-hydratase-FumD	unknown	unknown	gnl\|CDD\|182359
CP034389.1\|QAU16645.1\|2346398_2348003_-\|FAD-NAD(P)-binding-protein	unknown	unknown	gnl\|CDD\|182134
CP034389.1\|QAU16641.1\|2343409_2344057_+\|YdhW-family-putative-oxidoreductase-system-protein	unknown	unknown	gnl\|CDD\|182160
CP034389.1\|QAU16646.1\|2348128_2348434_-\|monooxygenase	unknown	unknown	gnl\|CDD\|182975
CP034389.1\|QAU16649.1\|2351892_2352534_+\|riboflavin-synthase	unknown	unknown	gnl\|CDD\|183846
CP034389.1\|QAU16640.1\|2341303_2343406_+\|aldehyde-ferredoxin-oxidoreductase	unknown	unknown	gnl\|CDD\|236629
CP034389.1\|QAU16650.1\|2352573_2353722_-\|cyclopropane-fatty-acyl-phospholipid-synthase	unknown	unknown	gnl\|CDD\|183282
CP034389.1\|QAU16654.1\|2357589_2357679_+\|YnhF-family-membrane-protein	unknown	unknown	unknown
CP034389.1\|QAU16655.1\|2357844_2359014_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|225371
CP034389.1\|QAU16652.1\|2355336_2356269_+\|LysR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|182948
CP034389.1\|QAU16644.1\|2345574_2346387_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|182159

Protein	Function_ID	Function_description	E-value
CP034389.1\|QAU16639.1\|2340656_2341283_+\|ferredoxin-like-protein	gnl\|CDD\|182135	PRK09898, PRK09898, ferredoxin-like protein.	5.22783e-140
CP034389.1\|QAU16647.1\|2349007_2350264_+\|hypothetical-protein	gnl\|CDD\|137602	PRK09945, PRK09945, hypothetical protein; Provisional.	0
CP034389.1\|QAU16656.1\|2359159_2359741_-\|superoxide-dismutase-[Fe]	gnl\|CDD\|182534	PRK10543, PRK10543, superoxide dismutase [Fe].	3.77321e-138
CP034389.1\|QAU16653.1\|2356265_2357291_-\|PurR-family-transcriptional-regulator	gnl\|CDD\|236739	PRK10703, PRK10703, HTH-type transcriptional repressor PurR.	0
CP034389.1\|QAU16643.1\|2344785_2345571_+\|thiosulfate-reductase-cytochrome-B-subunit	gnl\|CDD\|184968	PRK15006, PRK15006, thiosulfate reductase cytochrome B subunit; Provisional.	2.24741e-162
CP034389.1\|QAU16648.1\|2350304_2351678_-\|multidrug-efflux-MATE-transporter-MdtK	gnl\|CDD\|234981	PRK01766, PRK01766, multidrug efflux protein; Reviewed.	0
CP034389.1\|QAU16651.1\|2354012_2355224_-\|Bcr/CflA-family-multidrug-efflux-MFS-transporter	gnl\|CDD\|182924	PRK11043, PRK11043, Bcr/CflA family multidrug efflux MFS transporter.	0
CP034389.1\|QAU16642.1\|2344120_2344789_+\|thiosulfate-reductase-electron-transport-protein-PhsB	gnl\|CDD\|274451	TIGR03149, cyt_nit_nrfC, cytochrome c nitrite reductase, Fe-S protein. Members of this protein family are the Fe-S protein, NrfC, of a cytochrome c nitrite reductase system for which the pentaheme cytochrome c protein, NrfB (family TIGR03146) is an unambiguous marker. Members of this protein family show similarity to other ferredoxin-like proteins, including a subunit of a polysulfide reductase. [Energy metabolism, Electron transport].	2.88774e-75
CP034389.1\|QAU16637.1\|2338022_2339435_-\|pyruvate-kinase-I	gnl\|CDD\|181699	PRK09206, PRK09206, pyruvate kinase PykF.	0
CP034389.1\|QAU16638.1\|2339991_2340201_+\|fumarate-hydratase-FumD	gnl\|CDD\|182359	PRK10292, PRK10292, fumarate hydratase FumD.	2.11502e-34
CP034389.1\|QAU16645.1\|2346398_2348003_-\|FAD-NAD(P)-binding-protein	gnl\|CDD\|182134	PRK09897, PRK09897, FAD-NAD(P)-binding protein.	0
CP034389.1\|QAU16641.1\|2343409_2344057_+\|YdhW-family-putative-oxidoreductase-system-protein	gnl\|CDD\|182160	PRK09947, PRK09947, YdhW family putative oxidoreductase system protein.	1.85598e-122
CP034389.1\|QAU16646.1\|2348128_2348434_-\|monooxygenase	gnl\|CDD\|182975	PRK11118, PRK11118, putative monooxygenase; Provisional.	1.20156e-64
CP034389.1\|QAU16649.1\|2351892_2352534_+\|riboflavin-synthase	gnl\|CDD\|183846	PRK13020, PRK13020, riboflavin synthase subunit alpha; Provisional.	2.24506e-123
CP034389.1\|QAU16640.1\|2341303_2343406_+\|aldehyde-ferredoxin-oxidoreductase	gnl\|CDD\|236629	PRK09849, PRK09849, putative oxidoreductase; Provisional.	0
CP034389.1\|QAU16650.1\|2352573_2353722_-\|cyclopropane-fatty-acyl-phospholipid-synthase	gnl\|CDD\|183282	PRK11705, PRK11705, cyclopropane fatty acyl phospholipid synthase.	0
CP034389.1\|QAU16655.1\|2357844_2359014_+\|MFS-transporter	gnl\|CDD\|225371	COG2814, AraJ, Arabinose efflux permease [Carbohydrate transport and metabolism].	1.62898e-98
CP034389.1\|QAU16652.1\|2355336_2356269_+\|LysR-family-transcriptional-regulator	gnl\|CDD\|182948	PRK11074, PRK11074, putative DNA-binding transcriptional regulator; Provisional.	0
CP034389.1\|QAU16644.1\|2345574_2346387_+\|hypothetical-protein	gnl\|CDD\|182159	PRK09946, PRK09946, hypothetical protein; Provisional.	6.83407e-174

>CP034389.1|QAU16646.1|2348128_2348434_-|monooxygenase
MATLLQLHFSFNGPFGDAMAEQLKPLAESINQEPGFLWKVWTESEKNHEAGGIYLFTDEKSALAYLEKHTARLKNLGVEEVVAKVFDVNEPLSQINQAKLA
>CP034389.1|QAU16645.1|2346398_2348003_-|FAD-NAD(P)-binding-protein
MKKIAIVGAGPTGIYTLFSLLQQQTPLSISIFEQADEAGVGMPYSDEENSKLMLANIASIEIPPIYCTYLEWLQKQEASHLQRYGVKKETLHDRQFLPRILLGEYFRDQFLRLVDQARQQKFAVAVYESCQVTDLQITNAGVMIATNQDLPSETFDLAVIATGHVWPDEEEATRTYFPSPWSGLMEAKVDACNVGIMGTSLSGLDAAMAVAIQHGSFIEDDKQHVVFHRDNASEKLNITLMSRTGILPEADFYCPIPYEPLHTVTDQALNAEIQKGEYGLLDRVFRLIVEEIKFADPGWSQRIALESLNVDSFAQAWFAERKQRAPFDWAEKNLQEVERNKREKHTVPWRYVILRLHEAVQEIVPHLNEHDHKRFSKGLARVFIDNYAAIPSESIRRLLALREAGIIHILALGEDYEMEINESRTVLKTEDNSYSFDVFIDARGQRPLKVKDIPFPGLREQLQKTGDEIPDVGEDYTLQQPEEIRGRVAFGALPWLMHDQPFVQGLTACAEIGEAMARAVVKPASRARKRLSFD
>CP034389.1|QAU16644.1|2345574_2346387_+|hypothetical-protein
MIITRADLREWRIGAVMYRWFLRHFPRGGSYADIHHALIEEGYTDWAESLVEYAWKKWLADENFAHQEVSSMQKLATHPGERPFCSQFARSDDHARIGCCEDNARIATAGYAAQIASMGYSVRIGSVGFNSHIGSSGERARVAVTGNSSRISSAGDSSRIANTGMRVRVCTLGERCHVASNGDLVQIASFGANARIANSGDNVHIIASGENSTVVSTGVVDSIILGPGGSAALAYHDGERVRFAVAIEGENNIRAGVRYRLNEQHQFVEC
>CP034389.1|QAU16643.1|2344785_2345571_+|thiosulfate-reductase-cytochrome-B-subunit
MNPSQHAEQFQNQLANYVPQFTPQFWPVWLIIAGLLLVGMWLVLGLHALLRARGVKKSATDHGEKVYLYSKAVRLWHWSNALLFVLLLASGLINHFALVGATAVKSLVAVHEVCGFLLLACWLGFVLINAVGGNGHHYRIRRQGWLERAAKQTRFYLFGIMQGEEHPFPATTQSKFNPLQQVAYLGVMYGLLPLLLLTGLLCLYPQAVGDMFPGVRYWLLQAHFALAFISLFFIFGHLYLCTTGRTPHETFKSMVDGYHRH
>CP034389.1|QAU16642.1|2344120_2344789_+|thiosulfate-reductase-electron-transport-protein-PhsB
MSFTRRKFVLGMGTVIFFTGSASSLLANTRQEKKVRYAMIHDESRCNGCNICARACRKTNHVPAQGSRLSIAHIPVTDNDNETQYHFFRQSCQHCEDAPCIDVCPTAASWRDEQGIVRVEKSQCIGCSYCIGACPYQVRYLNPVTKVADKCDFCAESRLAKGFPPICVSACPEHALIFGREDSPEIQAWLQENKYYQYQLPGAGKPHLYRRLGQHLIKKENV
>CP034389.1|QAU16641.1|2343409_2344057_+|YdhW-family-putative-oxidoreductase-system-protein
MGEMNHKDELPLAEVSEIDEAKRQWLQGMRHPVDTVTEPEPAEILAEFIRQHSAAGQLVARAVFLSPPYSVAEEELSVLLENIKQNGDYADIACMTGSQDDYYYSTQAMSENYAAMSLQVVEQDICRAIAHAVRFECQTYPRPYKVAMLMQAPYYFQEAQIEAAIAAMDVAPEYADIRQVESSTAVLYLFSERFMTYGKAYGLCEWFEVEQFQNP
>CP034389.1|QAU16640.1|2341303_2343406_+|aldehyde-ferredoxin-oxidoreductase
MANGWTGNILRVNLTTGNITLEDSSKFKSFVGGMGFGYKIMYDEVPPGTKPFDEANKLVFATGPLTGSGAPCSSRVNITSLSTFTKGNLVVDAHMGGFFAAQMKFAGYDVIIIEGKAKSPVWLKIKDDKVSLEKADFLWGKGTRATTEEICRLTSPETCVAAIGQAGENLVPLSGMLNSRNHSGGAGTGAIMGSKNLKAIAVEGTKGVNIADRQEMKRLNDYMMTELIGANNNHVVPSTPQSWAEYSDPKSRWTARKGLFWGAAEGGPIETGEIPPGNQNTVGFRAYKSVFDLGPAAEKYTVKMSGCHSCPIRCMTQMNIPRVKEFGVPGTGGNTCVANFVHTTIFPNGPKDFEDKDDGRVIGNLVGLNLFDDYGLWCNYGQLHRDFTYCYSKGVFKRVLPAEEYAEIRWDQLEAGDVNFIKDFYYRLAHRVGELSHLADGSYAIAERWNLGEEYWGYAKNKLWSPFGYPVHHANEASAQVGSIVNCMFNRDCMTHTHINFIGSGLPLKLQREVAKELFGSEDAYDETKNYTPINDAKIKYAKWSLLRVCLHNAVTLCNWVWPMTVSPLKSRNYRGDLALEAKFFKAITGEDMTQEKLDLAAERIFTLHRAYTVKLMQTKDMRNEHDLICSWVFDKDPQIPVFTEGTDKMDRDDMHASLTMFYKEMGWDPQLGCPTRETLQRLGLEDIAADLAAHNLLPA
>CP034389.1|QAU16639.1|2340656_2341283_+|ferredoxin-like-protein
MNPVDRPLLDIGLTRLEFLRISGKGLAGLTIAPALLSLLGCKQEDIDSGTVGLINTPKGVLVTQRARCTGCHRCEISCTNFNDGSVGTFFSRIKIHRNYFFGDNGVGSGGGLYGDLNYTADTCRQCKEPQCMNVCPIGAITWQQEEGCITVDHKRCIGCSACTTACPWMMATVNTESKKSSKCVLCGECANACPTGALKIIEWKDITV
>CP034389.1|QAU16638.1|2339991_2340201_+|fumarate-hydratase-FumD
MGNRTKEDELYREMCRVVGKVVLEMRDLGQEPKHIVIAGVLRTALANKRIQRSELEKQAMETVINALVK
>CP034389.1|QAU16637.1|2338022_2339435_-|pyruvate-kinase-I
MKKTKIVCTIGPKTESEEMLAKMLDAGMNVMRLNFSHGDYAEHGQRIQNLRNVMSKTGKTAAILLDTKGPEIRTMKLEGGNDVSLKAGQTFTFTTDKSVIGNSEMVAVTYEGFTTDLSVGNTVLVDDGLIGMEVTAIEGNKVICKVLNNGDLGENKGVNLPGVSIALPALAEKDKQDLIFGCEQGVDFVAASFIRKRSDVIEIREHLKAHGGENIHIISKIENQEGLNNFDEILEASDGIMVARGDLGVEIPVEEVIFAQKMMIEKCIRARKVVITATQMLDSMIKNPRPTRAEAGDVANAILDGTDAVMLSGESAKGKYPLEAVSIMATICERTDRVMNSRLEFNNDNRKLRITEAVCRGAVETAEKLDAPLIVVATQGGKSARAVRKYFPDATILALTTNEKTAHQLVLSKGVVPQLVKEITSTDDFYRLGKELALQSGLAHKGDVVVMVSGALVPSGTTNTASVHVL
>CP034389.1|QAU16647.1|2349007_2350264_+|hypothetical-protein
MGSDAKNLMSDGNVQIVKTGEVIGATQLTEGELIVEAGGRAENTVVTGAGWLKVATGGIAKCTQYGNNGTLSVSDGAIATDIVQSEGGAISLSTLATVNGRHPEGEFSVDKGYACGLLLENGGNLRVLEGHRAEKIILDQEGGLLVNGTTSAVVVDEGGELLVYPGGEASNCEINQGGVFMLAGKANDTLLAGGTMNNLGGEDSDTIVENGAIYRLGTDGLQLYSSGKTQNLSVNVGGRAEVHAGTLENAVIQGGTVILLSPTSADENFVVEEDRAPVELTGSVALLDGASMIIGYGADLQQSTITVQQGGVLILDGSTVKGDSVTFSVGNINLNGGKLWLITGAATHVQLKVKRLRGEGAICLQTSAKEISPDFINVKGEVTGDIHVEITDASRQTLCNALKLQPDEDGIGATLQPA
>CP034389.1|QAU16648.1|2350304_2351678_-|multidrug-efflux-MATE-transporter-MdtK
MQKYISEARLLLALAIPVILAQIAQTAMGFVDTVMAGGYSATDMAAVAIGTSIWLPAILFGHGLLLALTPVIAQLNGSGRRERIAHQVRQGFWLAGFVSVLIMLVLWNAGYIIRSMENIDPALADKAVGYLRALLWGAPGYLFFQVARNQCEGLAKTKPGMVMGFIGLLVNIPVNYIFIYGHFGMPELGGVGCGVATAAVYWVMFLAMVSYIKRARSMRDIRNEKGTAKPDPAVMKRLIQLGLPIALALFFEVTLFAVVALLVSPLGIVDVAGHQIALNFSSLMFVLPMSLAAAVTIRVGYRLGQGSTLDAQTAARTGLMVGVCMATLTAIFTVSLREQIALLYNDNPEVVTLAAHLMLLAAVYQISDSIQVIGSGILRGYKDTRSIFYITFTAYWVLGLPSGYILALTDLVVEPMGPAGFWIGFIIGLTSAAIMMMLRMRFLQRLPSAIILQRAAR
>CP034389.1|QAU16649.1|2351892_2352534_+|riboflavin-synthase
MFTGIVQGTAKLVSIDEKPNFRTHVVELPDHMLDGLETGASVAHNGCCLTVTEINGNHVSFDLMKETLRITNLGDLKVGDWVNVERAAKFSDEIGGHLMSGHIMTTAEVAKILTSENNRQIWFKVQDSQLMKYILYKGFIGIDGISLTVGEVTPTRFCVHLIPETLERTTLGKKKLGARVNIEIDPQTQAVVDTVERVLAARENAMNQPGTEA
>CP034389.1|QAU16650.1|2352573_2353722_-|cyclopropane-fatty-acyl-phospholipid-synthase
MSSSCIEEVSVPDDNWYRIANELLSRAGIAINGSAPADIRVKNPDFFKRVLQEGSLGLGESYMDGWWECDRLDMFFSKVLRAGLENQLPHHFKDTLRIAGARLFNLQSKKRAWIVGKEHYDLGNDLFSRMLDPFMQYSCAYWKDADNLESAQQAKLKMICEKLQLKPGMRVLDIGCGWGGLAHYMASNYDVSVVGVTISAEQQKMAQERCEGLDVTILLQDYRDLNDQFDRIVSVGMFEHVGPKNYDTYFAVVDRNLKPEGIFLLHTIGSKKTDLNVDPWINKYIFPNGCLPSVRQIAQSSEPHFVMEDWHNFGADYDTTLMAWYERFLAAWPEIADNYSERFKRMFTYYLNACAGAFRARDIQLWQVVFSRGVENGLRVAR
>CP034389.1|QAU16651.1|2354012_2355224_-|Bcr/CflA-family-multidrug-efflux-MFS-transporter
MQPGKRFLVWLAGLSVLGFLATDMYLPAFAAIQADLQTPASAVSASLSLFLAGFAAAQLLWGPLSDRYGRKPVLLIGLTIFALGSLGMLWVENAATLLVLRFVQAVGVCAAAVIWQALVTDYYPSQKVNRIFATIMPLVGLSPALAPLLGSWLLVHFSWQAIFATLFAITVVLILPIFWLKPTTKARNNSQDGLTFTDLLRSKTYRGNVLIYAACSASFFAWLTGSPFILSEMGYSPAVIGLSYVPQTIAFLIGGYGCRAALQKWQGKQLLPWLLVLFAVSVIATWAAGFISHVSLVEILIPFCVMAIANGAIYPIVVAQALRPFPHATGRAAALQNTLQLGLCFLASLVVSWLISISTPLLTTTSVMLSTVVLVALGYMMQRCEEVGCQNHGNAEVAHSESH
>CP034389.1|QAU16652.1|2355336_2356269_+|LysR-family-transcriptional-regulator
MWSEYSLEVVDAVARNGSFSAAAQELHRVPSAVSYTVRQLEEWLAVPLFERRHRDVELTAAGAWFLKEGRSVVKKMQITRQQCQQIANGWRGQLAIAVDNIVRPERTRQMIVDFYRHFDDVELLVFQEVFNGVWDALSDGRVELAIGATRAIPVGGRYAFRDMGMLSWSCVVASHHPLALMDGPFSDDTLRNWPSLVREDTSRTLPKRITWLLDNQKRLVVPDWESSATCISAGLCIGMVPTHFAKPWLNEGKWVALELENPFPDSACCLTWQQNDMSPALTWLLEYLGDSETLNKEWLREPEETPATGD
>CP034389.1|QAU16653.1|2356265_2357291_-|PurR-family-transcriptional-regulator
MATIKDVAKRANVSTTTVSHVINKTRFVAEETRNAVWAAIKELHYSPSAVARSLKVNHTKSIGLLATSSEAAYFAEIIEAVEKNCFQKGYTLILGNAWNNLEKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWGEAKADFTDAVIDNAFEGGYMAGRYLIERGHREIGVIPGPLERNTGAGRLAGFMKAMEEAMIKVPESWIVQGDFEPESGYRAMQQILSQPHRPTAVFCGGDIMAMGALCAADEMGLRVPQDVSLIGYDNVRNARYFTPALTTIHQPKDSLGETAFNMLLDRIVNKREEPQSIEVHPRLIERRSVADGPFRDYRR
>CP034389.1|QAU16654.1|2357589_2357679_+|YnhF-family-membrane-protein
MSTDLKFSLVTTIIVLGLIVAVGLTAALH
>CP034389.1|QAU16655.1|2357844_2359014_+|MFS-transporter
MKINYPLLALAIGAFGIGTTEFSPMGLLPVIARGVDVSIPAAGMLISAYAVGVMVGAPLMTLLLSHRARRSALIFLMAIFTLGNVLSAIAPNYMTLMLSRILTSLNHGAFFGLGSVVAASVVPKHKQASAVATMFMGLTLANIGGVPAATWLGETIGWRMSFLATAGLGVISMVSLFFSLPKGGAGARPEVKKELAVLMRPQVLSALLTTVLGAGAMFTLYTYISPVLQSITHATPVFVTAMLVLIGVGFSIGNYLGGKLADRSVNGTLKGFLLLLMVIMLAIPFLARNEFGAAISMVVWGAATFAVVPPLQMRVMRVASEAPGLSSSVNIGAFNLGNALGAAAGGAVISAGLGYSFVPVMGAIVAGLALLLVFMSARKQPETVCVANS
>CP034389.1|QAU16656.1|2359159_2359741_-|superoxide-dismutase-[Fe]
MSFELPALPYAKDALAPHISAETIEYHYGKHHQTYVTNLNNLIKGTAFEGKSLEEIIRSSEGGVFNNAAQVWNHTFYWNCLAPNAGGEPTGKVAEAIAASFGSFADFKAQFTDAAIKNFGSGWTWLVKNSDGKLAIVSTSNAGTPLTTDATPLLTVDVWEHAYYIDYRNARPGYLEHFWALVNWEFVAKNLAA

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Crispr_ID: CP034389_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034389_5

3169594-3169741

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTACGGCAGTGAAC	CRISPRCasFinder
TTTCTAAGCTGCCTGTACGGCAGTGAAC	PILER-CR

2 spacers

The CRISPR arrays of CP034389_5

>merge|CP034389|5|3169594-3169741|CRISPRCasFinder,PILER-CR
CATTTTATCTGCCTGTACGGCAGTGAACATGGTGGGCGGGTGGAGTATGTTACCAGTGAATTTCTAAGCTGCCTGTACGGCAGTGAACGCCAACTTTCACAGCCTTTGCAAGATTGTTCCTTTCTAAGCTGCCTGTACGGCAGTGAAC

>CP034389|5|5|3169594-3169741|CRISPRCasFinder
CATTTTATCTGCCTGTACGGCAGTGAAC	ATGGTGGGCGGGTGGAGTATGTTACCAGTGAA
TTTCTAAGCTGCCTGTACGGCAGTGAAC	GCCAACTTTCACAGCCTTTGCAAGATTGTTCC
TTTCTAAGCTGCCTGTACGGCAGTGAAC

>CP034389|5|2|3169602-3169741|PILER-CR
CTGCCTGTACGGCAGTGAACATGGTGGG	CGGGTGGAGTATGTTACCAGTGAATTTCTAAG
CTGCCTGTACGGCAGTGAACGCCAACTT	TCACAGCCTTTGCAAGATTGTTCCTTTCTAAG
CTGCCTGTACGGCAGTGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP034389.1\|QAU17364.1\|3158139_3162210_-\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
CP034389.1\|QAU17378.1\|3179448_3180144_+\|aquaporin	unknown	unknown	gnl\|CDD\|235453
CP034389.1\|QAU17375.1\|3175145_3176261_-\|MacA-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|183211
CP034389.1\|QAU17367.1\|3164470_3166237_+\|ATP-binding/permease-CydD	unknown	unknown	gnl\|CDD\|236870
CP034389.1\|QAU17380.1\|3181465_3181645_-\|hypothetical-protein	unknown	unknown	unknown
CP034389.1\|QAU17379.1\|3180601_3181501_+\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
CP034389.1\|QAU19182.1\|3157369_3157981_-\|outer-membrane-lipoprotein-carrier-protein-LolA	unknown	unknown	gnl\|CDD\|129638
CP034389.1\|QAU17365.1\|3162344_3162839_-\|leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|183009
CP034389.1\|QAU17368.1\|3166237_3167959_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	unknown	unknown	gnl\|CDD\|236865
CP034389.1\|QAU17362.1\|3154632_3155925_-\|serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
CP034389.1\|QAU17373.1\|3172905_3173130_+\|cold-shock-protein-CspD	unknown	unknown	gnl\|CDD\|77494
CP034389.1\|QAU17370.1\|3168989_3169208_+\|translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP034389.1\|QAU17377.1\|3177364_3179023_-\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121
CP034389.1\|QAU17366.1\|3163382_3164348_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|182343
CP034389.1\|QAU17372.1\|3172262_3172583_-\|ATP-dependent-Clp-protease-adaptor-ClpS	unknown	unknown	gnl\|CDD\|178809
CP034389.1\|QAU17376.1\|3176375_3177368_+\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|225537
CP034389.1\|QAU17374.1\|3173202_3175149_-\|MacB-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|182528
CP034389.1\|QAU17363.1\|3156015_3157359_-\|replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP034389.1\|QAU17371.1\|3169955_3172232_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
CP034389.1\|QAU17369.1\|3168000_3168705_+\|leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720

Protein	Function_ID	Function_description	E-value
CP034389.1\|QAU17364.1\|3158139_3162210_-\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP034389.1\|QAU17378.1\|3179448_3180144_+\|aquaporin	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
CP034389.1\|QAU17375.1\|3175145_3176261_-\|MacA-family-efflux-pump-subunit	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP034389.1\|QAU17367.1\|3164470_3166237_+\|ATP-binding/permease-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP034389.1\|QAU17379.1\|3180601_3181501_+\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.06035e-116
CP034389.1\|QAU19182.1\|3157369_3157981_-\|outer-membrane-lipoprotein-carrier-protein-LolA	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
CP034389.1\|QAU17365.1\|3162344_3162839_-\|leucine-responsive-regulatory-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
CP034389.1\|QAU17368.1\|3166237_3167959_+\|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP034389.1\|QAU17362.1\|3154632_3155925_-\|serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
CP034389.1\|QAU17373.1\|3172905_3173130_+\|cold-shock-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
CP034389.1\|QAU17370.1\|3168989_3169208_+\|translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
CP034389.1\|QAU17377.1\|3177364_3179023_-\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
CP034389.1\|QAU17366.1\|3163382_3164348_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
CP034389.1\|QAU17372.1\|3172262_3172583_-\|ATP-dependent-Clp-protease-adaptor-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49
CP034389.1\|QAU17376.1\|3176375_3177368_+\|DUF535-domain-containing-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	1.59214e-132
CP034389.1\|QAU17374.1\|3173202_3175149_-\|MacB-family-efflux-pump-subunit	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP034389.1\|QAU17363.1\|3156015_3157359_-\|replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP034389.1\|QAU17371.1\|3169955_3172232_-\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP034389.1\|QAU17369.1\|3168000_3168705_+\|leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.78168e-138

>CP034389.1|QAU17370.1|3168989_3169208_+|translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP034389.1|QAU17369.1|3168000_3168705_+|leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWCEDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCEEFIGHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLPNKFWVPRCLFSPQE
>CP034389.1|QAU17368.1|3166237_3167959_+|cysteine/glutathione-ABC-transporter-ATP-binding-protein/permease-CydC
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPEVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGISLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEATLRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>CP034389.1|QAU17367.1|3164470_3166237_+|ATP-binding/permease-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLVLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGIDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>CP034389.1|QAU17366.1|3163382_3164348_+|thioredoxin-disulfide-reductase
MGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNSDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>CP034389.1|QAU17365.1|3162344_3162839_-|leucine-responsive-regulatory-protein
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>CP034389.1|QAU17364.1|3158139_3162210_-|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEEDESHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPTQPTVAWQPVPGPQTGEPVIAPAPEGYPQQSQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPVQQPYYAPAPEQSAQQPYYAPAPEQSVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPARPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSAGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNAEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFTLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPIAPQQQYQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>CP034389.1|QAU19182.1|3157369_3157981_-|outer-membrane-lipoprotein-carrier-protein-LolA
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>CP034389.1|QAU17363.1|3156015_3157359_-|replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAAGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTKDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>CP034389.1|QAU17362.1|3154632_3155925_-|serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG
>CP034389.1|QAU17371.1|3169955_3172232_-|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>CP034389.1|QAU17372.1|3172262_3172583_-|ATP-dependent-Clp-protease-adaptor-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>CP034389.1|QAU17373.1|3172905_3173130_+|cold-shock-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>CP034389.1|QAU17374.1|3173202_3175149_-|MacB-family-efflux-pump-subunit
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLERKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVSNPPAIEKVNVAGGTEPVVNTASGWRQFASGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>CP034389.1|QAU17375.1|3175145_3176261_-|MacA-family-efflux-pump-subunit
MKKRKTVKKRYVIALVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDTAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKVNDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>CP034389.1|QAU17376.1|3176375_3177368_+|DUF535-domain-containing-protein
MVKSTSCIIIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFRG
>CP034389.1|QAU17377.1|3177364_3179023_-|ATP-dependent-endonuclease
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENVPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>CP034389.1|QAU17378.1|3179448_3180144_+|aquaporin
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>CP034389.1|QAU17379.1|3180601_3181501_+|lysine-exporter-LysO-family-protein
MFSGLLIILVPLILGYLIPLRQKAALKVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSITVILLCNIAALMWLERGLPWRNYHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>CP034389.1|QAU17380.1|3181465_3181645_-|hypothetical-protein
MITPLKLYLICMFKVKTLNAGIKGIFHATLREIDLAQFWRQGSTAREVLCREKGDENRH

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Crispr_ID: CP034389_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP034389_7

4154464-4154605

Orphan

Consensus_repeat	Method
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP034389_7

>merge|CP034389|7|4154464-4154605|CRISPRCasFinder
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGATAGCTGTCGGATGCGGCATAAACGCCTTATCCAACCCGGCTGGAGAGCAACCGTAAGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA

>CP034389|7|6|4154464-4154605|CRISPRCasFinder
GCTGGAGAGCAACCGTAGGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA	TAGCTGTCGGATGCGGCATAAACGCCTTATCCAACCCG
GCTGGAGAGCAACCGTAAGCCGGATAAGATGCGCCAGCATCGCATCCGGCGA

Protein	Signature genes	Signature genes Name	Protein_function
CP034389.1\|QAU18256.1\|4161121_4162036_-\|ribonucleoside-hydrolase-RihC	unknown	unknown	gnl\|CDD\|182713
CP034389.1\|QAU18258.1\|4163053_4163503_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	unknown	unknown	gnl\|CDD\|237908
CP034389.1\|QAU18252.1\|4154634_4155030_-\|transcriptional-activatory-protein-CaiF	unknown	unknown	gnl\|CDD\|183154
CP034389.1\|QAU18255.1\|4160133_4160955_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|223366
CP034389.1\|QAU18249.1\|4150091_4151309_+\|L-carnitine-CoA-transferase	unknown	unknown	gnl\|CDD\|179589
CP034389.1\|QAU18259.1\|4163627_4164122_-\|lipoprotein-signal-peptidase	unknown	unknown	gnl\|CDD\|234739
CP034389.1\|QAU18248.1\|4148820_4149963_+\|crotonobetainyl-CoA-dehydrogenase	unknown	unknown	gnl\|CDD\|179566
CP034389.1\|QAU18260.1\|4164121_4166938_-\|isoleucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235588
CP034389.1\|QAU19225.1\|4151382_4152936_+\|crotonobetaine/carnitine-CoA-ligase	unknown	unknown	gnl\|CDD\|181195
CP034389.1\|QAU18247.1\|4147275_4148790_+\|L-carnitine/gamma-butyrobetaine-antiporter	unknown	unknown	gnl\|CDD\|179568
CP034389.1\|QAU18244.1\|4143739_4145026_-\|FAD-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|182273
CP034389.1\|QAU18254.1\|4158529_4159678_-\|carbamoyl-phosphate-synthase-small-subunit	unknown	unknown	gnl\|CDD\|237139
CP034389.1\|QAU18253.1\|4155290_4158512_-\|carbamoyl-phosphate-synthase-large-chain	unknown	unknown	gnl\|CDD\|235393
CP034389.1\|QAU18243.1\|4143455_4143743_-\|ferredoxin-like-protein-FixX	unknown	unknown	gnl\|CDD\|185346
CP034389.1\|QAU18257.1\|4162101_4163052_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	unknown	unknown	gnl\|CDD\|234893
CP034389.1\|QAU18251.1\|4153835_4154426_+\|carnitine-operon-protein-CaiE	unknown	unknown	gnl\|CDD\|184189
CP034389.1\|QAU18250.1\|4153044_4153830_+\|carnitinyl-CoA-dehydratase	unknown	unknown	gnl\|CDD\|179599
CP034389.1\|QAU18246.1\|4146032_4146803_-\|protein-FixA	unknown	unknown	gnl\|CDD\|179569
CP034389.1\|QAU18261.1\|4166980_4167922_-\|bifunctional-riboflavin-kinase/FAD-synthetase	unknown	unknown	gnl\|CDD\|235536
CP034389.1\|QAU18245.1\|4145076_4146018_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	unknown	unknown	gnl\|CDD\|235120

Protein	Function_ID	Function_description	E-value
CP034389.1\|QAU18256.1\|4161121_4162036_-\|ribonucleoside-hydrolase-RihC	gnl\|CDD\|182713	PRK10768, PRK10768, ribonucleoside hydrolase RihC; Provisional.	0
CP034389.1\|QAU18258.1\|4163053_4163503_-\|FKBP-type-peptidyl-prolyl-cis-trans-isomerase	gnl\|CDD\|237908	PRK15095, PRK15095, FKBP-type peptidyl-prolyl cis-trans isomerase; Provisional.	9.11961e-106
CP034389.1\|QAU18252.1\|4154634_4155030_-\|transcriptional-activatory-protein-CaiF	gnl\|CDD\|183154	PRK11476, PRK11476, carnitine metabolism transcriptional regulator CaiF.	1.42176e-74
CP034389.1\|QAU18255.1\|4160133_4160955_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|223366	COG0289, DapB, Dihydrodipicolinate reductase [Amino acid transport and metabolism].	2.21003e-141
CP034389.1\|QAU18249.1\|4150091_4151309_+\|L-carnitine-CoA-transferase	gnl\|CDD\|179589	PRK03525, PRK03525, L-carnitine CoA-transferase.	0
CP034389.1\|QAU18259.1\|4163627_4164122_-\|lipoprotein-signal-peptidase	gnl\|CDD\|234739	PRK00376, lspA, lipoprotein signal peptidase.	8.43095e-76
CP034389.1\|QAU18248.1\|4148820_4149963_+\|crotonobetainyl-CoA-dehydrogenase	gnl\|CDD\|179566	PRK03354, PRK03354, crotonobetainyl-CoA dehydrogenase; Validated.	0
CP034389.1\|QAU18260.1\|4164121_4166938_-\|isoleucine--tRNA-ligase	gnl\|CDD\|235588	PRK05743, ileS, isoleucyl-tRNA synthetase; Reviewed.	0
CP034389.1\|QAU19225.1\|4151382_4152936_+\|crotonobetaine/carnitine-CoA-ligase	gnl\|CDD\|181195	PRK08008, caiC, putative crotonobetaine/carnitine-CoA ligase; Validated.	0
CP034389.1\|QAU18247.1\|4147275_4148790_+\|L-carnitine/gamma-butyrobetaine-antiporter	gnl\|CDD\|179568	PRK03356, PRK03356, L-carnitine/gamma-butyrobetaine antiport BCCT transporter.	0
CP034389.1\|QAU18244.1\|4143739_4145026_-\|FAD-dependent-oxidoreductase	gnl\|CDD\|182273	PRK10157, PRK10157, putative oxidoreductase FixC; Provisional.	0
CP034389.1\|QAU18254.1\|4158529_4159678_-\|carbamoyl-phosphate-synthase-small-subunit	gnl\|CDD\|237139	PRK12564, PRK12564, carbamoyl-phosphate synthase small subunit.	0
CP034389.1\|QAU18253.1\|4155290_4158512_-\|carbamoyl-phosphate-synthase-large-chain	gnl\|CDD\|235393	PRK05294, carB, carbamoyl-phosphate synthase large subunit.	0
CP034389.1\|QAU18243.1\|4143455_4143743_-\|ferredoxin-like-protein-FixX	gnl\|CDD\|185346	PRK15449, PRK15449, ferredoxin-like protein FixX; Provisional.	1.84173e-69
CP034389.1\|QAU18257.1\|4162101_4163052_-\|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase	gnl\|CDD\|234893	PRK01045, ispH, 4-hydroxy-3-methylbut-2-enyl diphosphate reductase; Reviewed.	0
CP034389.1\|QAU18251.1\|4153835_4154426_+\|carnitine-operon-protein-CaiE	gnl\|CDD\|184189	PRK13627, PRK13627, carnitine operon protein CaiE; Provisional.	6.23334e-142
CP034389.1\|QAU18250.1\|4153044_4153830_+\|carnitinyl-CoA-dehydratase	gnl\|CDD\|179599	PRK03580, PRK03580, crotonobetainyl-CoA hydratase.	5.82869e-179
CP034389.1\|QAU18246.1\|4146032_4146803_-\|protein-FixA	gnl\|CDD\|179569	PRK03359, PRK03359, putative electron transfer flavoprotein FixA; Reviewed.	6.8619e-170
CP034389.1\|QAU18261.1\|4166980_4167922_-\|bifunctional-riboflavin-kinase/FAD-synthetase	gnl\|CDD\|235536	PRK05627, PRK05627, bifunctional riboflavin kinase/FAD synthetase.	1.26241e-173
CP034389.1\|QAU18245.1\|4145076_4146018_-\|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein	gnl\|CDD\|235120	PRK03363, fixB, electron transfer flavoprotein subunit alpha/FixB family protein.	0

>CP034389.1|QAU18251.1|4153835_4154426_+|carnitine-operon-protein-CaiE
MSYYAFEGLIPVVHPTAFVHPSAVLIGDVIVGAGVYIGPLASLRGDYGRLIVQAGANIQDGCIMHGYCDTDTIVGENGHIGHGAILHGCVIGRDALVGMNSVIMDGAVIGEESIVAAMSFVKAGFSGEKRQLLMGTPARAVRSVSDDELHWKRLNTKEYQDLVGRYHASLHETQPLRQMEENRPRLQGTTDVTPKR
>CP034389.1|QAU18250.1|4153044_4153830_+|carnitinyl-CoA-dehydratase
MSESLHLTRNGSILEITLDRPKANAIDAKTSFEMGEVFLNFRDDPQLRVAIITGAGEKFFSAGWDLKAAAEGEAPDADFGPGGFAGLTEIFNLDKPVIAAVNGYAFGGGFELALAADFIVCADNASFALPEAKLGIVPDSGGVLRLPKILPPAIVNEMVMTGRRMGAEEALRWGIVNRVVSQAELMDNARELAQQLVNSAPLAIAALKEIYRTTSEMPVEEAYRYIRSGVLKHYPSVLHSEDAIEGPLAFAEKRDPVWKGR
>CP034389.1|QAU19225.1|4151382_4152936_+|crotonobetaine/carnitine-CoA-ligase
MDIIGGQHLRQMWDDLADVYGHKTALICESSGGVVNRYSYLELNQEINRTANLFYTLGIRKGDKVALHLDNCPEFIFCWFGLAKIGAIMVPINARLLREESAWILQNSQACLLVTSAQFYPMYQQIQQEDATQLRHICLTDVALPADDGVSSFTQLKNQQPATLCYAPPLSTDDTAEILFTSGTTSRPKGVVITHYNLRFAGYYSAWQCALRDDDVYLTVMPAFHIDCQCTAAMAAFSAGATFVLVEKYSARAFWGQVQKYRATVTECIPMMIRTLMVQPPSANDRQHRLREVMFYLNLSEQEKDAFCERFGVRLLTSYGMTETIVGIIGDRPGDKRRWPSIGRAGFCYEAEIRDDHNCPLPAGEIGEICIKGVPGKTIFKEYFLNPKATAKVLEADGWLHTGDTGYRDEEGFFYFVDRRCNMIKRGGENVSCVELENIIATHPKIQDIVVVGIKDSIRDEAIKAFVVLNEGETLSEEEFFRFCEQNMAKFKVPSYLEIRKDLPRNCSGKIIRKNLK
>CP034389.1|QAU18249.1|4150091_4151309_+|L-carnitine-CoA-transferase
MDHLPMPKFGPLAGLRVVFSGIEIAGPFAGQMFAEWGAEVIWIENVAWADTIRVQPNYPQLSRRNLHALSLNIFKDEGREAFLKLMETTDIFIEASKGPAFARRGITDEVLWQHNPKLVIAHLSGFGQYGTEEYTNLPAYNTIAQAFSGYLIQNGDVDQPMPAFPYTADYFSGLTATTAALAALHKARETGKGESIDIAMYEVMLRMGQYFMMDYFNGGEMCPRMSKGKDPYYAGCGLYKCADGYIVMELVGITQIEECFKDIGLAHLLGTPEIPEGTQLIHRIECPYGPLVEEKLDAWLATHTIAEVKERFAELNIACAKVLTVPELESNPQYVARESITQWQTMDGRTCKGPNIMPKFKNNPGQIWRGMPSHGMDTAAILKNIGYSENDIQELVSKGLAKVED
>CP034389.1|QAU18248.1|4148820_4149963_+|crotonobetainyl-CoA-dehydrogenase
MDFNLNDEQELFVAGIRELMASENWEAYFAECDRDSVYPERFVKALADMGIDSLLIPEEHGGLDAGFVTLAAVWMELGCLGAPTYVLYQLPGGFNTFLREGTQEQIDKIMAFRGTGKQMWNSAITEPGAGSDVGSLKTTYTRRNGKIYLNGSKCFITSSAYTPYIVVMARDGASPDKPVYTEWFVDMSKPGIKVTKLEKLGLRMDSCCEITFDDVELDEKDMFGREGNGFNRVKEEFDHERFLVALTNYGTAMCAFEDAARYANQRVQFGEAIGRFQLIQEKFAHMAIKLNSMKNMLYEAAWKADNGTITSGDAAMCKYFCANAAFEVVDSAMQVLGGVGIAGNHRISRFWRDLRVDRVSGGSDEMQILTLGRAVLKQYR
>CP034389.1|QAU18247.1|4147275_4148790_+|L-carnitine/gamma-butyrobetaine-antiporter
MKNEKRKTGIEPKVFFPPLIIVGILCWLTVRDLDAANVVINAVFSYVTNVWGWAFEWYMVVMLFGWFWLVFGPYAKKRLGNEPPEFSTASWIFMMFASCTSAAVLFWGSIEIYYYISTPPFGLEPNSTGAKELGLAYSLFHWGPLPWATYSFLSVAFAYFFFVRKMEVIRPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLFGIPHTLQLDAIIITCWIILNAICVACGLQKGVRIASDVRSYLSFLMLGWVFIVSGASFIMNYFTDSVGMLLMYLPRMLFYTDPIAKGGFPQGWTVFYWAWWVIYAIQMSIFLARISRGRTVRELCFGMVLGLTASTWILWTVLGSNTLLLIDKNIINIPNLIEQYGVARAIIETWAALPLSTATMWGFFILCFIATVTLVNACSYTLAMSTCREVRDGEEPPLLVRIGWSILVGIIGIVLLALGGLKPIQTAIIAGGCPLFFVNIMVTLSFIKDAKQNWKD
>CP034389.1|QAU18246.1|4146032_4146803_-|protein-FixA
MKIITCYKCVPDEQDIAVNNADGSLDFSKADAKISQYDLNAIEAACQLKQQAAEAQVTALSVGGKALTNAKGRKDVLSRGPDELIVVIDDQFEQALPQQTASALAAAAQKAGFDLILCGDGSSDLYAQQVGLLVGEILNIPAVNGVSKIISLTADTLTVERELEDETETLSIPLPAVVAVSTDINSPQIPSMKAILGAAKKPVQVWSAADIGFNAEAAWSEQQVAAPKQRERQRIVIEGDGEEQIAAFAENLRKVI
>CP034389.1|QAU18245.1|4145076_4146018_-|electron-transfer-flavoprotein-subunit-alpha/FixB-family-protein
MNTFSQVWVFSDTPSRLPELMNGAQALANQINTFVLNDADGAQAIQLGANHVWKLNGKPDDRMIEDYAGVMADTIRQHGADGLVLLPNTRRGKLLAAKLGYRLKAAVSNDASTVSVQDGKATVKHMVYGGLAIGEERIATPYAVLTISSGTFDAAQPDASRTGETHTVEWQAPAVAITRTATQARQSNSVDLDKARLVVSVGRGIGSKENIALAEQLCKAIGAELACSRPVAENEKWMEHERYVGISNLMLKPELYLAVGISGQIQHMVGANASQTIFAINKDKNAPIFQYADYGIVGDAVKILPALTAALAR
>CP034389.1|QAU18244.1|4143739_4145026_-|FAD-dependent-oxidoreductase
MSEDIFDAIIVGAGLAGSVAALVLAREGAQVLVIERGNSAGAKNVTGGRLYAHSLEHIIPGFADSAPVERLITHEKLAFMTEKSAMTMDYCNGDETSPSQRSYSVLRSKFDAWLMEQAEEAGAQLITGIRVDNLVQRDGKVVGVEADGDVIEAKTVILADGVNSILAEKLGMAKRVKPTDVAVGVKELIELPKSVIEDRFQLQGNQGAACLFAGSPTDGLMGGGFLYTNENTLSLGLVCGLHHLHDAKKSVPQMLEDFKQHPAVAPLIAGGKLVEYSAHVVPEAGINMLPELVGDGVLIAGDAAGMCMNLGFTIRGMDLAIAAGEAAAKTVLSAMKSDDFSKQKLAEYRQYLESGPLRDMRMYQKLPAFLDNPRMFNGYPELAVGVARDLFTIDGSAPELMRKKILRHGKKVGFINLIKDGMKGVTVL
>CP034389.1|QAU18243.1|4143455_4143743_-|ferredoxin-like-protein-FixX
MTSPVNVDVKLGVNKFNVDEEHPHIVVKADADKQALELLVKACPAGLYKKQDDGSVRFDYAGCLECGTCRILGLGSALEQWEYPRGTFGVEFRYG
>CP034389.1|QAU18252.1|4154634_4155030_-|transcriptional-activatory-protein-CaiF
MCEGYVEKPLYLLIAEWMMAENRWVIAREISIHFDIEHSKAVNTLTYILSEVTEISCEVKMIPNKLEGRGCQCQRLVKVVDIDEQIYARLRNNSREKLVGVRKTPRIPAVPLTELNREQKWQMMLSKSMRR
>CP034389.1|QAU18253.1|4155290_4158512_-|carbamoyl-phosphate-synthase-large-chain
MPKRTDIKSILILGAGPIVIGQACEFDYSGAQACKALREEGYRVILVNSNPATIMTDPEMADATYIEPIHWEVVRKIIEKERPDAVLPTMGGQTALNCALELERQGVLEEFGVTMIGATADAIDKAEDRRRFDVAMKKIGLETARSGIAHTMEEALAVAADVGFPCIIRPSFTMGGSGGGIAYNREEFEEICARGLDLSPTKELLIDESLIGWKEYEMEVVRDKNDNCIIVCSIENFDAMGIHTGDSITVAPAQTLTDKEYQIMRNASMAVLREIGVETGGSNVQFAVNPKNGRLIVIEMNPRVSRSSALASKATGFPIAKVAAKLAVGYTLDELMNDITGGRTPASFEPSIDYVVTKIPRFNFEKFAGANDRLTTQMKSVGEVMAIGRTQQESLQKALRGLEVGATGFDPKVSLDDPEALTKIRRELKDAGADRIWYIADAFRAGLSVDGVFNLTNIDRWFLVQIEELVRLEEKVAEVGITGLNAEFLRQLKRKGFADARLAKLAGVREAEIRKLRDQYDLHPVYKRVDTCAAEFATDTAYMYSTYEEECEANPSTDREKIMVLGGGPNRIGQGIEFDYCCVHASLALREDGYETIMVNCNPETVSTDYDTSDRLYFEPVTLEDVLEIVRIEKPKGVIVQYGGQTPLKLARALEAAGVPVIGTSPDAIDRAEDRERFQHAVDRLKLKQPANATVTAIEMAVEKAKEIGYPLVVRPSYVLGGRAMEIVYDEADLRRYFQTAVSVSNDAPVLLDHFLDDAVEVDVDAICDGEMVLIGGIMEHIEQAGVHSGDSACSLPAYTLSQEIQDVMRQQVQKLAFELQVRGLMNVQFAVKNNEVYLIEVNPRAARTVPFVSKATGVPLAKVAARVMAGKSLAEQGVTKEVIPPYYSVKEVVLPFNKFPGVDPLLGPEMRSTGEVMGVGRTFAEAFAKAQLGSNSTMKKHGRALLSVREGDKERVVDLAAKLLKQGFELDATHGTAIVLGEAGINPRLVNKVHEGRPHIQDRIKNGEYTYIINTTSGRRAIEDSRVIRRSALQYKVHYDTTLNGGFATAMALNADATEKVISVQEMHAQIK
>CP034389.1|QAU18254.1|4158529_4159678_-|carbamoyl-phosphate-synthase-small-subunit
MIKSALLVLEDGTQFHGRAIGATGSAVGEVVFNTSMTGYQEILTDPSYSRQIVTLTYPHIGNVGTNDADEESSQVHAQGLVIRDLPLIASNFRNTEDLSSYLKRHNIVAITDIDTRKLTRLLREKGAQNGCIIAGDNPDAALALEKARAFPGLNGMDLAKEVTTAEAYSWTQGSWTLTGGLPEAKKEDELPFHVVAYDFGAKRNILRMLVDRGCRLTIVPAQTSAEDVLKMNPDGIFLSNGPGDPAPCDYAITAIQKFLETDIPVFGICLGHQLLALASGAKTVKMKFGHHGGNHPVKDVEKNVVMITAQNHGFAVDEAILPANLRVTHKSLFDGTLQGIHRTDKPAFSFQGHPEASPGPHDAAPLFDHFIELIEQYRKTAK
>CP034389.1|QAU18255.1|4160133_4160955_-|4-hydroxy-tetrahydrodipicolinate-reductase
MHDANIRVAIAGAGGRMGRQLIQAALALEGVQLGAALEREGSSLLGSDAGELAGAGKTGVTVQSSLDAIKDDFDVFIDFTRPEGTLNHLAFCRQHGKGMVIGTTGFDEAGKQAIRDAAADIAIVFAANFSVGVNVMLKLLEKAAKVMGDYTDIEIIEAHHRHKVDAPSGTALAMGEAIAHALDKDLKDCAVYSREGHTGERVPGTIGFATVRAGDIVGEHTAMFADIGERLEITHKASSRMTFANGAVRSALWLSGKESGLFDMRDVLDLNSL
>CP034389.1|QAU18256.1|4161121_4162036_-|ribonucleoside-hydrolase-RihC
MRLPIFLDTDPGIDDAVAIAAAIFAPELDLQLMTTVAGNVSVEKTTRNALQLLHFWNAEIPLAQGAAVPLVRAPRDAASVHGKSGMAGYDFVEHNRKPLEVPAFLAIRDALMRAPEPVTLVAIGPLTNIALLLSQCPECKPHIRRLVIMGGSAGRGNCTPNAEFNIAADPEAAACVFRSGIEIVMCGLDVTNQAILTPDYLATLPELNRTGKMLHALFSHYRSGSMQSGLRMHDLCAIAWLVRPDLFTLKPCFVAVETQGEFTSGTTVVDIDGCLGKPANVQVALDLNVKGFQQWVADLLALVP
>CP034389.1|QAU18257.1|4162101_4163052_-|4-hydroxy-3-methylbut-2-enyl-diphosphate-reductase
MQILLANPRGFCAGVDRAISIVENALAIYGAPIYVRHEVVHNRYVVDSLRERGAIFIEQISEVPDGAILIFSAHGVSQAVRNEAKSRDLTVFDATCPLVTKVHMEVARASRRGEESILIGHAGHPEVEGTMGQYSNPEGGMYLVESPDDVWKLTVKNEEKLSFMTQTTLSVDDTSDVIDALRKRFPKIVGPRKDDICYATTNRQEAVRALAEQAEVVLVVGSKNSSNSNRLAELAQRMGKRAFLIDDAKDIQEEWVKEVKCVGVTAGASAPDILVQNVVARLQQLGGGEAIPLEGREENIVFEVPKELRVDIREVD
>CP034389.1|QAU18258.1|4163053_4163503_-|FKBP-type-peptidyl-prolyl-cis-trans-isomerase
MSESVQSNSAVLVHFTLKLDDGTTAESTRNNGKPALFRLGDASLSEGLEQHLLGLKVGDKTTFSLEPDAAFGVPSPDLIQYFSRREFMDAGEPEIGAIMLFTAMDGSEMPGVIREINGDSITVDFNHPLAGQTVHFDIEVLEIDPALEA
>CP034389.1|QAU18259.1|4163627_4164122_-|lipoprotein-signal-peptidase
MSQSICSTGLRWLWLVVVVLIIDLGSKYLILQNFALGDTVPLFPSLNLHYARNYGAAFSFLADSGGWQRWFFAGIAIGISVILAVMMYRSKATQKLNNIAYALIIGGALGNLFDRLWHGFVVDMIDFYVGDWHFATFNLADTAICVGAALIVLEGFLPSKAKKQ
>CP034389.1|QAU18260.1|4164121_4166938_-|isoleucine--tRNA-ligase
MSDYKSTLNLPETGFPMRGDLAKREPGMLARWTDDDLYGIIRAAKKGKKTFILHDGPPYANGSIHIGHSVNKILKDIIVKSKGLSGYDSPYVPGWDCHGLPIELKVEQEYGKPGEKFTAAEFRAKCREYAATQVDGQRKDFIRLGVLGDWSHPYLTMDFKTEANIIRALGKIIGNGHLHKGAKPVHWCVDCRSALAEAEVEYYDKTSPSIDVAFQAVDQDALKAKFAVSNVNGPISLVIWTTTPWTLPANRAISIAPDFDYALVQIDGQAVILAKDLVESVMQRIGVTDYTILGTVKGAELELLRFTHPFMGFDVPAILGDHVTLDAGTGAVHTAPGHGPDDYVIGQKYGLETANPVGPDGTYLPGTYPTLDGVNVFKANDIVVALLQEKGALLHVEKMQHSYPCCWRHKTPIIFRATPQWFVSMDQKGLRAQSLKEIKGVQWIPDWGQARIESMVANRPDWCISRQRTWGVPMSLFVHKDTEELHPRTLELMEEVAKRVEVDGIQAWWDLDAKEILGDEADQYVKVPDTLDVWFDSGSTHSSVVDVRPEFAGHAADMYLEGSDQHRGWFMSSLMISTAMKGKAPYRQVLTHGFTVDGQGRKMSKSIGNTVSPQDVMNKLGADILRLWVASTDYTGEMAVSDEILKRAADSYRRIRNTARFLLANLNGFDPAKDMVKPEEMVVLDRWAVGCAKAAQEDILNAYEAYDFHEVVQRLMRFCSVEMGSFYLDIIKDRQYTAKADSVARRSCQTALYHIAEALVRWMAPILSFTADEVWGYLPGEREKYVFTGEWYEGLFGLADSEAMNDAFWDELLKVRGEVNKVIEQARADKKVGGSLEAAVTLYAEPELAAKLTALGDELRFVLLTSGATVADYNDAPADAQQSEVLKGLKVALSKAEGEKCPRCWHYTRDVGKVAEHAEICGRCVSNVAGDGEKRKFA
>CP034389.1|QAU18261.1|4166980_4167922_-|bifunctional-riboflavin-kinase/FAD-synthetase
MKLIRGIHNLSQAPQEGCVLTIGNFDGVHRGHRALLQGLQEEGRKRNLPVMVMLFEPQPLELFATDKAPARLTRLREKLRYLAECGVDYVLCVRFDRRFAALTAQNFISDLLVKHLRVKFLAVGDDFRFGAGREGDFLLLQKAGMEYGFDITSTQTFCEGGVRISSTAVRQALADDNLALAESLLGHPFAISGRVVHGDELGRTIGFPTANVPLRRQVSPVKGVYAVEVLGLGEKPLPGVANIGTRPTVAGIRQQLEVHLLDVAMDLYGRHIQVVLRKKIRNEQRFASLDELKAQIARDELTAREFFGLTKPA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP034389_1	1.15\|1116162\|33\|CP034389\|PILER-CR	1116162-1116194	33	CP034389.1	1095446-1095478	1	0.97
CP034389_1	1.36\|1116163\|32\|CP034389\|CRISPRCasFinder,CRT	1116163-1116194	32	CP034389.1	1095446-1095477	1	0.969

1. spacer 1.15|1116162|33|CP034389|PILER-CR matches to position: 1095446-1095478, mismatch: 1, identity: 0.97

attccggctacttttgttgctccctgctcatcc	CRISPR spacer
attccagctacttttgttgctccctgctcatcc	Protospacer
*****.***************************

2. spacer 1.36|1116163|32|CP034389|CRISPRCasFinder,CRT matches to position: 1095446-1095477, mismatch: 1, identity: 0.969

ttccggctacttttgttgctccctgctcatcc	CRISPR spacer
ttccagctacttttgttgctccctgctcatcc	Protospacer
****.***************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP034389_4	4.1\|3036542\|40\|CP034389\|CRISPRCasFinder	3036542-3036581	40	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	47951-47990	0	1.0
CP034389_6	6.1\|3616051\|24\|CP034389\|PILER-CR	3616051-3616074	24	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37652-37675	0	1.0
CP034389_6	6.1\|3616051\|24\|CP034389\|PILER-CR	3616051-3616074	24	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37935-37958	0	1.0
CP034389_6	6.2\|3616098\|25\|CP034389\|PILER-CR	3616098-3616122	25	NC_049946	Escherichia virus Lambda_4A7 genome assembly, chromosome: 1	37604-37628	0	1.0
CP034389_6	6.2\|3616098\|25\|CP034389\|PILER-CR	3616098-3616122	25	LR595861	Escherichia virus Lambda_4C10 genome assembly, chromosome: 1	37887-37911	0	1.0
CP034389_6	6.1\|3616051\|24\|CP034389\|PILER-CR	3616051-3616074	24	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44572-44595	1	0.958
CP034389_6	6.2\|3616098\|25\|CP034389\|PILER-CR	3616098-3616122	25	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	44524-44548	1	0.96
CP034389_3	3.1\|2348613\|38\|CP034389\|CRISPRCasFinder	2348613-2348650	38	NZ_CP043437	Enterobacter sp. LU1 plasmid unnamed	113727-113764	2	0.947
CP034389_6	6.2\|3616098\|25\|CP034389\|PILER-CR	3616098-3616122	25	NZ_CP015341	Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence	35661-35685	4	0.84
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24789-24826	6	0.842
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	24902-24939	6	0.842
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4073-4110	6	0.842
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4072-4109	6	0.842
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4072-4109	6	0.842
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4072-4109	6	0.842
CP034389_1	1.25\|1115490\|32\|CP034389\|CRISPRCasFinder,CRT	1115490-1115521	32	NC_018022	Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence	373536-373567	7	0.781
CP034389_2	2.1\|1142166\|31\|CP034389\|CRISPRCasFinder	1142166-1142196	31	LR597649	Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1	17850-17880	7	0.774
CP034389_2	2.1\|1142166\|31\|CP034389\|CRISPRCasFinder	1142166-1142196	31	NC_049393	Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1	17628-17658	7	0.774
CP034389_2	2.1\|1142166\|31\|CP034389\|CRISPRCasFinder	1142166-1142196	31	NC_049394	Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1	17890-17920	7	0.774
CP034389_1	1.29\|1115734\|32\|CP034389\|CRISPRCasFinder,CRT	1115734-1115765	32	NZ_CP053709	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence	405764-405795	8	0.75
CP034389_1	1.29\|1115734\|32\|CP034389\|CRISPRCasFinder,CRT	1115734-1115765	32	NZ_CP053710	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence	354033-354064	8	0.75
CP034389_1	1.29\|1115734\|32\|CP034389\|CRISPRCasFinder,CRT	1115734-1115765	32	NZ_CP053712	Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence	91487-91518	8	0.75
CP034389_1	1.30\|1115795\|32\|CP034389\|CRISPRCasFinder,CRT	1115795-1115826	32	NC_013085	Synechococcus phage S-RSM4, complete genome	75536-75567	8	0.75
CP034389_1	1.30\|1115795\|32\|CP034389\|CRISPRCasFinder,CRT	1115795-1115826	32	FM207411	Synechococcus phage S-RSM4 complete genome	75536-75567	8	0.75
CP034389_1	1.34\|1116040\|33\|CP034389\|CRISPRCasFinder,CRT	1116040-1116072	33	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	413541-413573	8	0.758
CP034389_1	1.39\|1116346\|32\|CP034389\|CRISPRCasFinder,CRT	1116346-1116377	32	MN855615	Siphoviridae sp. isolate 320, complete genome	7076-7107	8	0.75
CP034389_1	1.39\|1116346\|32\|CP034389\|CRISPRCasFinder,CRT	1116346-1116377	32	NC_034248	Rhizobium phage RHEph10, complete genome	31444-31475	8	0.75
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3331-3368	8	0.789
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3330-3367	8	0.789
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3330-3367	8	0.789
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3330-3367	8	0.789
CP034389_1	1.13\|1116039\|34\|CP034389\|PILER-CR	1116039-1116072	34	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	413540-413573	9	0.735
CP034389_1	1.18\|1116345\|33\|CP034389\|PILER-CR	1116345-1116377	33	MN855615	Siphoviridae sp. isolate 320, complete genome	7075-7107	9	0.727
CP034389_1	1.29\|1115734\|32\|CP034389\|CRISPRCasFinder,CRT	1115734-1115765	32	JX469828	Uncultured bacterium plasmid pRSB223, complete sequence	47585-47616	9	0.719
CP034389_1	1.29\|1115734\|32\|CP034389\|CRISPRCasFinder,CRT	1115734-1115765	32	JX469829	Uncultured bacterium plasmid pB1, complete sequence	23183-23214	9	0.719
CP034389_1	1.29\|1115734\|32\|CP034389\|CRISPRCasFinder,CRT	1115734-1115765	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	393203-393234	9	0.719
CP034389_1	1.29\|1115734\|32\|CP034389\|CRISPRCasFinder,CRT	1115734-1115765	32	NC_008766	Acidovorax sp. JS42 plasmid pAOVO02, complete sequence	3158-3189	9	0.719
CP034389_1	1.29\|1115734\|32\|CP034389\|CRISPRCasFinder,CRT	1115734-1115765	32	NZ_CP020331	Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence	569059-569090	9	0.719
CP034389_1	1.29\|1115734\|32\|CP034389\|CRISPRCasFinder,CRT	1115734-1115765	32	NZ_MN366361	Bacterium plasmid pALTS33, complete sequence	54575-54606	9	0.719
CP034389_1	1.31\|1115856\|32\|CP034389\|CRISPRCasFinder,CRT	1115856-1115887	32	MW084976	Bacillus phage Kirov, complete genome	56770-56801	9	0.719
CP034389_1	1.37\|1116224\|32\|CP034389\|CRISPRCasFinder,CRT	1116224-1116255	32	NZ_CP016721	Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence	30466-30497	9	0.719
CP034389_1	1.37\|1116224\|32\|CP034389\|CRISPRCasFinder,CRT	1116224-1116255	32	NZ_CP016727	Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence	30464-30495	9	0.719
CP034389_1	1.41\|1116468\|32\|CP034389\|CRISPRCasFinder,CRT	1116468-1116499	32	MK448690	Streptococcus phage Javan169, complete genome	9831-9862	9	0.719
CP034389_1	1.41\|1116468\|32\|CP034389\|CRISPRCasFinder,CRT	1116468-1116499	32	MK448854	Streptococcus phage Javan146, complete genome	11811-11842	9	0.719
CP034389_5	5.1\|3169622\|32\|CP034389\|CRISPRCasFinder	3169622-3169653	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
CP034389_5	5.1\|3169622\|32\|CP034389\|CRISPRCasFinder	3169622-3169653	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
CP034389_5	5.1\|3169622\|32\|CP034389\|CRISPRCasFinder	3169622-3169653	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
CP034389_5	5.3\|3169630\|32\|CP034389\|PILER-CR	3169630-3169661	32	NZ_CP045060	Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence	9736-9767	9	0.719
CP034389_5	5.3\|3169630\|32\|CP034389\|PILER-CR	3169630-3169661	32	NZ_CP045053	Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence	9737-9768	9	0.719
CP034389_5	5.3\|3169630\|32\|CP034389\|PILER-CR	3169630-3169661	32	NZ_CP045057	Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence	9736-9767	9	0.719
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	14114-14151	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP048307	Escherichia coli strain 9 plasmid p009_C, complete sequence	51843-51880	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229388-229425	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239882-239919	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230794-230831	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211764-211801	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	40383-40420	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	313601-313638	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	386517-386554	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	397090-397127	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	404135-404172	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	114998-115035	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	40307-40344	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	MT230112	Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence	103-140	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31308-31345	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	8897-8934	9	0.763
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	17901-17938	9	0.763
CP034389_1	1.29\|1115734\|32\|CP034389\|CRISPRCasFinder,CRT	1115734-1115765	32	NC_004929	Ruegeria sp. PR1b plasmid pSD20, complete sequence	67373-67404	10	0.688
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP044308	Escherichia coli strain C27A plasmid pC27A-3, complete sequence	56040-56077	10	0.737
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP053046	Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence	58275-58312	10	0.737
CP034389_7	7.1\|4154516\|38\|CP034389\|CRISPRCasFinder	4154516-4154553	38	NZ_CP010208	Escherichia coli strain M11 plasmid B, complete sequence	30215-30252	10	0.737

1. spacer 4.1|3036542|40|CP034389|CRISPRCasFinder matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 0, identity: 1.0

gcgctgcgggtcattcttgaaattacccccgctgtgctgt	CRISPR spacer
gcgctgcgggtcattcttgaaattacccccgctgtgctgt	Protospacer
****************************************

2. spacer 6.1|3616051|24|CP034389|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

3. spacer 6.1|3616051|24|CP034389|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

cgcctttacctgatttgggtaaac	CRISPR spacer
cgcctttacctgatttgggtaaac	Protospacer
************************

4. spacer 6.2|3616098|25|CP034389|PILER-CR matches to NC_049946 (Escherichia virus Lambda_4A7 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

5. spacer 6.2|3616098|25|CP034389|PILER-CR matches to LR595861 (Escherichia virus Lambda_4C10 genome assembly, chromosome: 1) position: , mismatch: 0, identity: 1.0

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttcaggtaaactttat	Protospacer
*************************

6. spacer 6.1|3616051|24|CP034389|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.958

cgcctttacctgatttgggtaaac	CRISPR spacer
tgcctttacctgatttgggtaaac	Protospacer
.***********************

7. spacer 6.2|3616098|25|CP034389|PILER-CR matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 1, identity: 0.96

tttacctctttcaggtaaactttat	CRISPR spacer
tttacctctttaaggtaaactttat	Protospacer
*********** *************

8. spacer 3.1|2348613|38|CP034389|CRISPRCasFinder matches to NZ_CP043437 (Enterobacter sp. LU1 plasmid unnamed) position: , mismatch: 2, identity: 0.947

cggacgcaggatggtgcgttcaattggactcgaaccaa	CRISPR spacer
cagacgcagaatggtgcgttcaattggactcgaaccaa	Protospacer
*.*******.****************************

9. spacer 6.2|3616098|25|CP034389|PILER-CR matches to NZ_CP015341 (Lactobacillus brevis strain 100D8 plasmid unnamed3, complete sequence) position: , mismatch: 4, identity: 0.84

tttacctctttcaggtaaactttat	CRISPR spacer
ggtatctcattcaggtaaactttat	Protospacer
  **.*** ****************

10. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttgatgtcggatgcggcgtaaacgccttatccgaccta	Protospacer
* * *************.**************.***..

11. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttgatgtcggatgcggcgtaaacgccttatccgaccta	Protospacer
* * *************.**************.***..

12. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

13. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

14. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

15. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 6, identity: 0.842

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
taactgccggatgcggcataaacgccttatccggccta	Protospacer
**.***.*************************..**..

16. spacer 1.25|1115490|32|CP034389|CRISPRCasFinder,CRT matches to NC_018022 (Mycolicibacterium chubuense NBB4 plasmid pMYCCH.01, complete sequence) position: , mismatch: 7, identity: 0.781

aatggcgctgccgatcgacaaatgggacctgg-	CRISPR spacer
gatggcgatgccgatggacaaat-gcacatgct	Protospacer
.****** ******* ******* * ** **

17. spacer 2.1|1142166|31|CP034389|CRISPRCasFinder matches to LR597649 (Escherichia phage ESSI2_ev015 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.774

caaacgtcaggcggaagtgttccggtcatat	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttac	Protospacer
 **.  ****** ************** **.

18. spacer 2.1|1142166|31|CP034389|CRISPRCasFinder matches to NC_049393 (Escherichia phage ESSI2_ev040 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.774

caaacgtcaggcggaagtgttccggtcatat	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttac	Protospacer
 **.  ****** ************** **.

19. spacer 2.1|1142166|31|CP034389|CRISPRCasFinder matches to NC_049394 (Escherichia phage ESSI2_ev129 genome assembly, chromosome: 1) position: , mismatch: 7, identity: 0.774

caaacgtcaggcggaagtgttccggtcatat	CRISPR spacer
aaaggctcaggctgaagtgttccggtcttac	Protospacer
 **.  ****** ************** **.

20. spacer 1.29|1115734|32|CP034389|CRISPRCasFinder,CRT matches to NZ_CP053709 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

21. spacer 1.29|1115734|32|CP034389|CRISPRCasFinder,CRT matches to NZ_CP053710 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

22. spacer 1.29|1115734|32|CP034389|CRISPRCasFinder,CRT matches to NZ_CP053712 (Acetobacteraceae bacterium strain PAMC 26569 plasmid unnamed5, complete sequence) position: , mismatch: 8, identity: 0.75

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgccagcgccccgcgcgcctgcttcgtcc	Protospacer
*** ********** ******** .** ..*.

23. spacer 1.30|1115795|32|CP034389|CRISPRCasFinder,CRT matches to NC_013085 (Synechococcus phage S-RSM4, complete genome) position: , mismatch: 8, identity: 0.75

-----tccttaattacaacgacaccactggaaaaatt	CRISPR spacer
gtagctcc-----tacaacgacagcattggaaaaatc	Protospacer
     ***     ********** **.*********.

24. spacer 1.30|1115795|32|CP034389|CRISPRCasFinder,CRT matches to FM207411 (Synechococcus phage S-RSM4 complete genome) position: , mismatch: 8, identity: 0.75

-----tccttaattacaacgacaccactggaaaaatt	CRISPR spacer
gtagctcc-----tacaacgacagcattggaaaaatc	Protospacer
     ***     ********** **.*********.

25. spacer 1.34|1116040|33|CP034389|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 8, identity: 0.758

cgggagccagtgctaacgatatcgcggccgcgc	CRISPR spacer
ggcgcggcagcgcgaacgatatcgcggccgccg	Protospacer
 * * * ***.** *****************

26. spacer 1.39|1116346|32|CP034389|CRISPRCasFinder,CRT matches to MN855615 (Siphoviridae sp. isolate 320, complete genome) position: , mismatch: 8, identity: 0.75

gccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
ccactgcccatcaaagcaccagcaagcgcata	Protospacer
 *  .*. ****** *** *************

27. spacer 1.39|1116346|32|CP034389|CRISPRCasFinder,CRT matches to NC_034248 (Rhizobium phage RHEph10, complete genome) position: , mismatch: 8, identity: 0.75

gccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
accgcggccatcaacgcagcagcataaggaga	Protospacer
.*****  **************** . * * *

28. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

29. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

30. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

31. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 8, identity: 0.789

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
.*.***.**********.**************. **..

32. spacer 1.13|1116039|34|CP034389|PILER-CR matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.735

gcgggagccagtgctaacgatatcgcggccgcgc	CRISPR spacer
cggcgcggcagcgcgaacgatatcgcggccgccg	Protospacer
  * * * ***.** *****************

33. spacer 1.18|1116345|33|CP034389|PILER-CR matches to MN855615 (Siphoviridae sp. isolate 320, complete genome) position: , mismatch: 9, identity: 0.727

ggccgcgtacatcaacgcagcagcaagcgcata	CRISPR spacer
accactgcccatcaaagcaccagcaagcgcata	Protospacer
. *  .*. ****** *** *************

34. spacer 1.29|1115734|32|CP034389|CRISPRCasFinder,CRT matches to JX469828 (Uncultured bacterium plasmid pRSB223, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

35. spacer 1.29|1115734|32|CP034389|CRISPRCasFinder,CRT matches to JX469829 (Uncultured bacterium plasmid pB1, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

36. spacer 1.29|1115734|32|CP034389|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
gccgggcagcgcccggcgcgcctcagccatca	Protospacer
 **.* ******************  . *.*

37. spacer 1.29|1115734|32|CP034389|CRISPRCasFinder,CRT matches to NC_008766 (Acidovorax sp. JS42 plasmid pAOVO02, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

38. spacer 1.29|1115734|32|CP034389|CRISPRCasFinder,CRT matches to NZ_CP020331 (Martelella mediterranea DSM 17316 strain MACL11 plasmid pMM593, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
cggagcccgcgcccggcgcgccgcttcacatg	Protospacer
*  **** ************** ***.*  .

39. spacer 1.29|1115734|32|CP034389|CRISPRCasFinder,CRT matches to NZ_MN366361 (Bacterium plasmid pALTS33, complete sequence) position: , mismatch: 9, identity: 0.719

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ggcctccagcgccttgcgcgcctctttagcgg	Protospacer
  *  ********. *************.*

40. spacer 1.31|1115856|32|CP034389|CRISPRCasFinder,CRT matches to MW084976 (Bacillus phage Kirov, complete genome) position: , mismatch: 9, identity: 0.719

ttcgccaggtgttttcttttcccggtcagtca	CRISPR spacer
aattccaagtgttttcttttcccagtctataa	Protospacer
  . ***.***************.*** .* *

41. spacer 1.37|1116224|32|CP034389|CRISPRCasFinder,CRT matches to NZ_CP016721 (Lactococcus lactis subsp. lactis strain UC11 plasmid pUC11B, complete sequence) position: , mismatch: 9, identity: 0.719

aatatttacttggatgcgtcggacattgaatc	CRISPR spacer
tttcatgacttgaatgcgtaggacattgaaag	Protospacer
  *  * *****.****** **********

42. spacer 1.37|1116224|32|CP034389|CRISPRCasFinder,CRT matches to NZ_CP016727 (Lactococcus lactis subsp. lactis strain UC08 plasmid pUC08B, complete sequence) position: , mismatch: 9, identity: 0.719

aatatttacttggatgcgtcggacattgaatc	CRISPR spacer
tttcatgacttgaatgcgtaggacattgaaag	Protospacer
  *  * *****.****** **********

43. spacer 1.41|1116468|32|CP034389|CRISPRCasFinder,CRT matches to MK448690 (Streptococcus phage Javan169, complete genome) position: , mismatch: 9, identity: 0.719

tcaacgaaaacgcagagcgaggaacggatatt	CRISPR spacer
aagagcaaaacggagagcgagaaacggatttc	Protospacer
  .*  ****** ********.******* *.

44. spacer 1.41|1116468|32|CP034389|CRISPRCasFinder,CRT matches to MK448854 (Streptococcus phage Javan146, complete genome) position: , mismatch: 9, identity: 0.719

tcaacgaaaacgcagagcgaggaacggatatt	CRISPR spacer
aagagcaaaacggagagcgagaaacggatttc	Protospacer
  .*  ****** ********.******* *.

45. spacer 5.1|3169622|32|CP034389|CRISPRCasFinder matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

46. spacer 5.1|3169622|32|CP034389|CRISPRCasFinder matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

47. spacer 5.1|3169622|32|CP034389|CRISPRCasFinder matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

48. spacer 5.3|3169630|32|CP034389|PILER-CR matches to NZ_CP045060 (Salmonella enterica subsp. enterica serovar Muenchen strain LG26 plasmid pLG26p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

49. spacer 5.3|3169630|32|CP034389|PILER-CR matches to NZ_CP045053 (Salmonella enterica subsp. enterica serovar Muenchen strain LG24 plasmid pLG24p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

50. spacer 5.3|3169630|32|CP034389|PILER-CR matches to NZ_CP045057 (Salmonella enterica subsp. enterica serovar Muenchen strain LG25 plasmid pLG25p1, complete sequence) position: , mismatch: 9, identity: 0.719

atggtgggcgggtggagtatgttaccagtgaa	CRISPR spacer
acaccgggcgggtggaacatgttaccaggaca	Protospacer
*.. .***********..********** . *

51. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tgattgccggatgcggcgtaaacgccttatccggccta	Protospacer
*...**.**********.**************..**..

52. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP048307 (Escherichia coli strain 9 plasmid p009_C, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ctggtgccggatgcggcgtaaacgccttatccggccta	Protospacer
. * **.**********.**************..**..

53. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

54. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

55. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

56. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cgactgccggatgcggcgtaaacgccttatccggccta	Protospacer
...***.**********.**************..**..

57. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tttttgccggatgcggcgtaaacgccttatccggccta	Protospacer
*  .**.**********.**************..**..

58. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
aaaatgccggatgcggcgtaaacgccttatccggccta	Protospacer
 *. **.**********.**************..**..

59. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caagtgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*. **.**********.**************..**..

60. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caattgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*..**.**********.**************..**..

61. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ttcttgccggatgcggcgtaaacgccttatccggccta	Protospacer
*  .**.**********.**************..**..

62. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ccactgccggatgcggcgtaaacgccttatccgtccta	Protospacer
. .***.**********.**************. **..

63. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
tttatgccggatgcggcgtaaacgccttatccggccta	Protospacer
*   **.**********.**************..**..

64. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to MT230112 (Escherichia coli strain DH5alpha plasmid pESBL112, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
atgttgccggatgcggcgtaaacgccttatccggccta	Protospacer
  *.**.**********.**************..**..

65. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caaatgccggatgcggcgtaaacgccttatccggccta	Protospacer
.*. **.**********.**************..**..

66. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
cggttgccggatgcggcgtaaacgccttatccggccta	Protospacer
..*.**.**********.**************..**..

67. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 9, identity: 0.763

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
gacttgccggatgcggcgtaaacgccttatccggccac	Protospacer
 * .**.**********.**************..**

68. spacer 1.29|1115734|32|CP034389|CRISPRCasFinder,CRT matches to NC_004929 (Ruegeria sp. PR1b plasmid pSD20, complete sequence) position: , mismatch: 10, identity: 0.688

cccagccagcgcccggcgcgcctctttaacct	CRISPR spacer
ccccgcctgcgcccggcgcgcctgccagaggg	Protospacer
*** *** *************** .. .*

69. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP044308 (Escherichia coli strain C27A plasmid pC27A-3, complete sequence) position: , mismatch: 10, identity: 0.737

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
ccattgccggatgcggcgtaaacgccttatccggccta	Protospacer
. ..**.**********.**************..**..

70. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP053046 (Escherichia fergusonii strain HNCF11W plasmid pHNCF11W-130kb, complete sequence) position: , mismatch: 10, identity: 0.737

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
aggttgccggatgcggcgtaaacgccttatccggcata	Protospacer
 .*.**.**********.**************..* ..

71. spacer 7.1|4154516|38|CP034389|CRISPRCasFinder matches to NZ_CP010208 (Escherichia coli strain M11 plasmid B, complete sequence) position: , mismatch: 10, identity: 0.737

tagctgtcggatgcggcataaacgccttatccaacccg	CRISPR spacer
caaatgccggatgcggcgtaaacgccttatctggccta	Protospacer
.*. **.**********.*************...**..

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

802612 : 867762

Escherichia_phage(30.77%)

protease,transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU15289.1\|802612_803107_+\|protease	hydrogenase 2 maturation protease	NA	NA	NA	NA
QAU15290.1\|803099_803588_+	hydrogenase-2 operon protein HybE	NA	NA	NA	NA
QAU15291.1\|803580_803922_+	hydrogenase nickel incorporation protein	NA	NA	NA	NA
QAU15292.1\|803934_804183_+	hydrogenase-2 operon protein HybG	NA	NA	NA	NA
QAU15293.1\|804305_805172_-	glutathione-dependent disulfide-bond oxidoreductase	NA	NA	NA	NA
QAU15294.1\|805376_807236_+	bifunctional glutathionylspermidine amidase/synthase	NA	NA	NA	NA
QAU15295.1\|807527_809027_+	low-affinity inorganic phosphate transporter 2	NA	NA	NA	NA
QAU15296.1\|809075_809768_-	thymidylate kinase	NA	NA	NA	NA
QAU15297.1\|811279_815848_+	accessory colonization factor AcfD	NA	NA	NA	NA
QAU15298.1\|815922_816036_+	prepilin peptidase A domain protein	NA	NA	NA	NA
QAU15299.1\|816045_816855_+	prepilin peptidase	NA	NA	NA	NA
QAU15300.1\|816920_817331_+	hypothetical protein	NA	NA	NA	NA
QAU15301.1\|817348_818308_+	type II secretion system protein GspC	NA	NA	NA	NA
QAU15302.1\|818337_820398_+	type II secretion system protein GspD	NA	NA	NA	NA
QAU15303.1\|820397_821891_+	type II secretion system protein GspE	NA	NA	NA	NA
QAU15304.1\|821890_823114_+	type II secretion system protein GspF	NA	NA	NA	NA
QAU15305.1\|823130_823586_+	type II secretion system protein GspG	NA	NA	NA	NA
QAU15306.1\|823589_824153_+	type II secretion system protein GspH	NA	NA	NA	NA
QAU15307.1\|824149_824521_+	type II secretion system protein GspI	NA	NA	NA	NA
QAU15308.1\|824517_825123_+	type II secretion system protein GspJ	NA	NA	NA	NA
QAU15309.1\|825119_826097_+	general secretion pathway protein GspK	NA	NA	NA	NA
QAU15310.1\|826093_827272_+	type II secretion system protein GspL	NA	NA	NA	NA
QAU15311.1\|827273_827810_+	type II secretion system protein	NA	NA	NA	NA
QAU15312.1\|828744_829761_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	4.9e-186	99.4
QAU15313.1\|830436_830808_+	hypothetical protein	NA	NA	NA	NA
QAU15314.1\|830834_832580_+	polysaccharide export protein	NA	NA	NA	NA
QAU15315.1\|832646_833447_+	ABC transporter	NA	NA	NA	NA
QAU15316.1\|833458_834109_+	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.5e-07	24.8
QAU15317.1\|834122_835325_+	sugar transporter	NA	NA	NA	NA
QAU15318.1\|835465_838195_+	family 2 glycosyl transferase	A0A0E3FKP5	Synechococcus_phage	1.4e-06	35.4
QAU19075.1\|838200_840615_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
QAU15319.1\|840631_841834_+	hypothetical protein	NA	NA	NA	NA
QAU15320.1\|842030_843197_+	nucleotide sugar dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	4.2e-117	56.5
QAU15321.1\|843832_844738_+	glycosyltransferase family 2 protein	NA	NA	NA	NA
QAU15322.1\|844841_846863_+	glycosyltransferase	NA	NA	NA	NA
QAU15323.1\|846850_847882_+	glycosyltransferase family 1 protein	NA	NA	NA	NA
QAU15324.1\|847945_848962_+\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
QAU15325.1\|849350_850436_+	dTDP-glucose 4,6-dehydratase	A0A1D7XFE8	Escherichia_phage	1.3e-96	50.4
QAU15326.1\|850435_851323_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	4.3e-29	35.5
QAU15327.1\|851403_852282_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	2.4e-104	63.1
QAU15328.1\|852348_852900_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	4.7e-50	55.6
QAU15329.1\|852949_855097_+	capsular polysaccharide biosynthesis protein	NA	NA	NA	NA
QAU15330.1\|856258_857479_+	capsular biosynthesis protein	NA	NA	NA	NA
QAU19076.1\|857501_857738_-	hypothetical protein	NA	NA	NA	NA
QAU15331.1\|857840_858017_-	DUF957 domain-containing protein	NA	NA	NA	NA
QAU15332.1\|858460_858838_-	toxin	NA	NA	NA	NA
QAU15333.1\|859368_859590_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	1.1e-10	45.8
QAU15334.1\|859658_860135_-	DNA repair protein RadC	NA	NA	NA	NA
QAU15335.1\|860150_860636_-	antirestriction protein	A9J566	Pseudomonas_phage	3.4e-12	31.5
QAU15336.1\|860690_861509_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	3.9e-45	39.0
QAU19077.1\|861529_861664_-	cytoplasmic protein	NA	NA	NA	NA
QAU15337.1\|861663_861822_-	DUF905 domain-containing protein	NA	NA	NA	NA
QAU15338.1\|861892_864739_-	autotransporter adhesin Ag43	NA	NA	NA	NA
QAU19078.1\|865140_865401_+\|transposase	transposase	NA	NA	NA	NA
QAU15339.1\|865584_866858_-\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-170	95.7
QAU15340.1\|866823_867762_+\|transposase	IS3 family transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1375993 : 1410484

Escherichia_phage(48.57%)

integrase,tail,terminase

attL 1358895:1358910|attR 1397411:1397426

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1358895:1358910	attL	NA	NA	NA	NA
QAU15779.1\|1375993_1377460_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	2.3e-88	39.1
QAU15780.1\|1377528_1379106_+	glutamine-hydrolyzing GMP synthase	NA	NA	NA	NA
QAU15781.1\|1379298_1380549_+\|integrase	site-specific integrase	A0A0F6TJM5	Escherichia_coli_O157_typing_phage	3.0e-238	99.3
QAU15782.1\|1380552_1380747_-	DUF1382 family protein	A0A0F6R7M7	Escherichia_coli_O157_typing_phage	9.7e-27	98.4
QAU15783.1\|1380743_1381394_-	adenine methylase	A0A2R9YJG0	Escherichia_phage	5.0e-128	100.0
QAU19101.1\|1381386_1381638_-	PerC family transcriptional regulator	G9L6A0	Escherichia_phage	3.1e-41	100.0
QAU15784.1\|1381795_1382044_-	AlpA family phage regulatory protein	A0A0F6TJ45	Escherichia_coli_O157_typing_phage	3.6e-42	100.0
QAU15785.1\|1382093_1383035_-	recombinase RecT	A0A2R9YJJ1	Escherichia_phage	4.5e-178	100.0
QAU15786.1\|1383031_1383853_-	exodeoxyribonuclease VIII	A0A2R9YJH7	Escherichia_phage	1.2e-163	100.0
QAU15787.1\|1383849_1384149_-	hypothetical protein	A0A0F6R7M4	Escherichia_coli_O157_typing_phage	1.4e-45	98.0
QAU15788.1\|1384457_1385042_-	XRE family transcriptional regulator	A0A0F6R8L7	Escherichia_coli_O157_typing_phage	7.0e-105	100.0
QAU15789.1\|1385196_1385427_+	hypothetical protein	G9L6A7	Escherichia_phage	2.6e-39	100.0
QAU15790.1\|1385577_1385778_+	hypothetical protein	A0A0F6TJB7	Escherichia_coli_O157_typing_phage	1.0e-31	98.5
QAU15791.1\|1385793_1386609_+	primosomal protein	Q286X4	Escherichia_phage	1.7e-117	95.6
QAU15792.1\|1386605_1387391_+	replication protein	A0A0F6TJ71	Escherichia_coli_O157_typing_phage	3.6e-152	99.6
QAU15793.1\|1387508_1387856_+	DUF1064 domain-containing protein	A0A0F6R8N5	Escherichia_coli_O157_typing_phage	5.9e-59	96.5
QAU15794.1\|1387917_1388397_+	hypothetical protein	Q9MCR3	Enterobacteria_phage	1.5e-28	54.2
QAU15795.1\|1388393_1388939_+	hypothetical protein	J9Q748	Salmonella_phage	3.2e-83	83.2
QAU15796.1\|1388935_1389235_+	hypothetical protein	A5VWB2	Enterobacteria_phage	1.4e-56	97.0
QAU15797.1\|1389236_1390001_+	ead/Ea22-like family protein	A0A1B0VCG7	Salmonella_phage	2.4e-68	95.6
QAU15798.1\|1390174_1390438_+	hypothetical protein	NA	NA	NA	NA
QAU15799.1\|1390514_1391444_+	DUF551 domain-containing protein	Q1MVF7	Enterobacteria_phage	7.9e-66	50.6
QAU15800.1\|1391936_1392611_+\|terminase	terminase small subunit	Q287B7	Escherichia_phage	3.4e-119	99.6
QAU15801.1\|1392607_1394077_+\|terminase	terminase	G9L6B8	Escherichia_phage	1.2e-289	97.4
QAU15802.1\|1394081_1394687_-	hypothetical protein	NA	NA	NA	NA
QAU15803.1\|1395448_1395655_+	hypothetical protein	G9L6C1	Escherichia_phage	6.0e-11	100.0
QAU15804.1\|1395669_1397349_+\|tail	phage tail protein	G9L6C2	Escherichia_phage	3.1e-302	99.1
QAU15805.1\|1397345_1397642_+	hypothetical protein	G9L6C3	Escherichia_phage	1.3e-46	100.0
1397411:1397426	attR	NA	NA	NA	NA
QAU15806.1\|1397644_1398340_+	peptidase	G9L6C4	Escherichia_phage	6.0e-95	100.0
QAU15807.1\|1398354_1399341_+	hypothetical protein	G9L6C5	Escherichia_phage	2.5e-179	94.5
QAU15808.1\|1399392_1399830_+	hypothetical protein	A0A0F6R7N9	Escherichia_coli_O157_typing_phage	1.9e-70	94.5
QAU15809.1\|1399840_1400176_+	hypothetical protein	G9L6C7	Escherichia_phage	7.7e-56	100.0
QAU15810.1\|1400232_1400838_+	hypothetical protein	G9L6C9	Escherichia_phage	2.8e-112	100.0
QAU15811.1\|1400837_1403309_+	hypothetical protein	G9L6D0	Escherichia_phage	0.0e+00	99.3
QAU15812.1\|1403308_1403773_+	hypothetical protein	G9L6D1	Escherichia_phage	1.1e-84	99.4
QAU15813.1\|1403772_1404348_+	hypothetical protein	A0A0F6TJ56	Escherichia_coli_O157_typing_phage	7.0e-81	95.3
QAU15814.1\|1404347_1407095_+	hypothetical protein	A0A193GYI3	Enterobacter_phage	1.2e-117	43.5
QAU15815.1\|1407094_1410484_+	hypothetical protein	A0A1E1GEP2	Vibrio_phage	3.4e-183	36.8

DBSCAN-SWA_3

1414619 : 1421375

Escherichia_phage(87.5%)

holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU15822.1\|1414619_1414877_-	hypothetical protein	G9L6E3	Escherichia_phage	3.4e-43	100.0
QAU19104.1\|1417281_1417578_+	hypothetical protein	NA	NA	NA	NA
QAU15823.1\|1417800_1418205_+	hypothetical protein	G9L6E6	Escherichia_phage	2.7e-63	97.0
QAU15824.1\|1418191_1418500_+\|holin	phage holin family protein	G9L6E7	Escherichia_phage	1.2e-47	95.1
QAU15825.1\|1418489_1419119_+	glycoside hydrolase family 19 protein	G9L6E8	Escherichia_phage	1.8e-114	97.6
QAU15826.1\|1419115_1419598_+	DUF2514 domain-containing protein	A0A0F6TK39	Escherichia_coli_O157_typing_phage	3.2e-71	90.0
QAU15827.1\|1419817_1420357_-	hypothetical protein	G9L6F0	Escherichia_phage	2.9e-44	96.6
QAU15828.1\|1420372_1420888_-	glycine zipper 2TM domain-containing protein	G9L6F1	Escherichia_phage	1.0e-62	100.0
QAU15829.1\|1421201_1421375_-	DUF2633 family protein	G9L6F2	Escherichia_phage	6.8e-24	100.0

DBSCAN-SWA_4

1814216 : 1823658

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU16166.1\|1814216_1815143_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	2.2e-23	30.8
QAU16167.1\|1815147_1815879_+	ABC transporter permease	NA	NA	NA	NA
QAU16168.1\|1815859_1815967_-	protein YohO	NA	NA	NA	NA
QAU16169.1\|1816026_1816758_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	2.8e-111	99.0
QAU16170.1\|1816979_1818665_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	9.5e-304	99.5
QAU16171.1\|1818661_1819381_+	two-component system response regulator YehT	NA	NA	NA	NA
QAU16172.1\|1819427_1819898_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
QAU16173.1\|1819938_1820400_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
QAU16174.1\|1820524_1822525_-	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.8
QAU16175.1\|1822521_1823658_-	VWA domain-containing protein	Q9EYF7	Enterobacteria_phage	4.2e-162	97.4

DBSCAN-SWA_5

1835568 : 1901410

Escherichia_phage(42.55%)

portal,plate,holin,tRNA,tail,integrase,terminase,head,capsid,lysis

attL 1862715:1862742|attR 1896337:1896364

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU16181.1\|1835568_1837602_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.8e-54	27.6
QAU16182.1\|1837733_1838843_+	protein mrp	NA	NA	NA	NA
QAU16183.1\|1839105_1839387_+	DUF2574 family protein	NA	NA	NA	NA
QAU16184.1\|1839682_1840225_+	type 1 fimbrial protein	NA	NA	NA	NA
QAU16185.1\|1840305_1840980_+	fimbrial assembly protein	NA	NA	NA	NA
QAU16186.1\|1840995_1843476_+	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
QAU19112.1\|1843486_1844521_+	pilus assembly protein	NA	NA	NA	NA
QAU16187.1\|1844602_1844941_-	nickel/cobalt homeostasis protein RcnB	NA	NA	NA	NA
QAU16188.1\|1845159_1845963_-	nickel/cobalt efflux protein RcnA	NA	NA	NA	NA
QAU16189.1\|1846083_1846356_+	transcriptional regulator	NA	NA	NA	NA
QAU16190.1\|1846578_1847367_+	hydroxyethylthiazole kinase	NA	NA	NA	NA
QAU16191.1\|1847363_1848164_+	bifunctional hydroxymethylpyrimidine kinase/phosphomethylpyrimidine kinase	NA	NA	NA	NA
QAU16192.1\|1848228_1849047_+	glycosyl hydrolase 25 family protein	D0R7H8	Paenibacillus_phage	2.5e-23	38.0
QAU16193.1\|1849098_1849845_+	GntR family transcriptional regulator	NA	NA	NA	NA
QAU16194.1\|1849818_1850784_-	sugar kinase	NA	NA	NA	NA
QAU16195.1\|1850780_1851785_-	ADP-ribosylglycohydrolase family protein	A0A1S6UB21	Serratia_phage	9.9e-14	29.4
QAU16196.1\|1851781_1853059_-	MFS transporter	NA	NA	NA	NA
QAU16197.1\|1853315_1854368_+	fructose-bisphosphate aldolase	NA	NA	NA	NA
QAU16198.1\|1854594_1855449_+	tagatose bisphosphate family class II aldolase	NA	NA	NA	NA
QAU16199.1\|1855477_1856740_+	tagatose-1,6-bisphosphate aldolase	NA	NA	NA	NA
QAU16200.1\|1856749_1857202_+	PTS galactitol transporter subunit IIA	NA	NA	NA	NA
QAU16201.1\|1857232_1857517_+	PTS galactitol transporter subunit IIB	NA	NA	NA	NA
QAU16202.1\|1857520_1858876_+	PTS galactitol transporter subunit IIC	NA	NA	NA	NA
QAU16203.1\|1858924_1859965_+	galactitol-1-phosphate 5-dehydrogenase	NA	NA	NA	NA
QAU16204.1\|1860064_1860844_+	DeoR/GlpR transcriptional regulator	NA	NA	NA	NA
QAU16205.1\|1860925_1861825_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	1.7e-12	29.0
QAU16206.1\|1862239_1862557_+	hypothetical protein	NA	NA	NA	NA
QAU16207.1\|1862544_1862724_+	hypothetical protein	NA	NA	NA	NA
1862715:1862742	attL	NA	NA	NA	NA
QAU16208.1\|1862821_1863835_-\|integrase	site-specific integrase	Q83VS6	Escherichia_phage	4.1e-193	99.1
QAU16209.1\|1863950_1864250_-	helix-turn-helix domain-containing protein	Q1JS61	Enterobacteria_phage	2.4e-48	100.0
QAU16210.1\|1864371_1864647_+	hypothetical protein	Q1JS60	Enterobacteria_phage	1.3e-48	100.0
QAU19113.1\|1864824_1865325_+	replication protein B	M1SV55	Escherichia_phage	1.0e-91	99.4
QAU16211.1\|1865388_1865613_+	DUF2732 family protein	S4TP68	Salmonella_phage	4.7e-33	100.0
QAU16212.1\|1865612_1865915_+	hypothetical protein	A0A0F7LCL4	Escherichia_phage	2.5e-45	97.0
QAU16213.1\|1865914_1866139_+	TraR/DksA family transcriptional regulator	A0A0F7LDG9	Escherichia_phage	5.0e-35	98.6
QAU16214.1\|1866135_1866414_+	hypothetical protein	U5N3W1	Enterobacteria_phage	2.0e-41	98.8
QAU16215.1\|1866410_1867418_+	hypothetical protein	B7SYG0	Stenotrophomonas_phage	8.5e-66	43.7
QAU16216.1\|1867414_1869706_+	replication endonuclease	Q858T4	Yersinia_virus	0.0e+00	97.5
QAU16217.1\|1869702_1870032_+	DUF3850 domain-containing protein	Q7Y4B7	Escherichia_virus	3.3e-35	97.3
QAU16218.1\|1870070_1870832_-	hypothetical protein	P79670	Escherichia_phage	1.0e-140	99.2
QAU16219.1\|1871006_1872767_-	ATP-dependent endonuclease	NA	NA	NA	NA
QAU16220.1\|1873149_1874184_-\|portal	phage portal protein	Q858W8	Yersinia_virus	2.4e-201	99.7
QAU16221.1\|1874183_1875956_-\|terminase	terminase ATPase subunit family protein	A0A0F7LCK3	Escherichia_phage	0.0e+00	99.8
QAU16222.1\|1876129_1876984_+\|capsid	GPO family capsid scaffolding protein	Q778Z1	Enterobacteria_phage	4.6e-137	100.0
QAU16223.1\|1877042_1878116_+\|capsid	phage major capsid protein, P2 family	Q94MC7	Enterobacteria_phage	3.0e-202	99.7
QAU16224.1\|1878119_1878863_+\|terminase	terminase	Q858W5	Yersinia_virus	4.6e-125	98.8
QAU16225.1\|1878962_1879472_+\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	1.1e-90	100.0
QAU16226.1\|1879471_1879675_+\|tail	phage tail protein	A0A0F7LCN2	Escherichia_phage	3.0e-31	100.0
QAU16227.1\|1879678_1879960_+\|holin	holin	A0A0F7LA12	Escherichia_phage	1.3e-43	100.0
QAU16228.1\|1879959_1880457_+	lysozyme	A0A0F7LBS0	Escherichia_phage	1.2e-92	99.4
QAU16229.1\|1880471_1880897_+	protein lysA	Q858W1	Yersinia_virus	3.3e-59	88.7
QAU16230.1\|1880884_1881310_+\|lysis	LysB family phage lysis regulatory protein	Q858W0	Yersinia_virus	1.2e-64	95.0
QAU16231.1\|1881281_1881455_+\|lysis	phage lysis protein	Q7Y4E1	Escherichia_virus	2.3e-24	96.5
QAU16232.1\|1881417_1881885_+\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	2.5e-81	98.1
QAU16233.1\|1881877_1882330_+	phage virion morphogenesis protein	A0A0F7LDR6	Escherichia_phage	1.2e-75	98.7
QAU16234.1\|1882396_1883032_+\|plate	phage baseplate assembly protein V	A0A0F7LBP2	Escherichia_phage	3.6e-110	97.2
QAU16235.1\|1883028_1883376_+\|plate	baseplate assembly protein	A0A0F7L9X3	Escherichia_phage	1.7e-58	100.0
QAU16236.1\|1883380_1884289_+\|plate	baseplate assembly protein	A0A0F7LCJ3	Escherichia_phage	1.2e-162	100.0
QAU16237.1\|1884281_1884812_+\|tail	phage tail protein I	U5N0U8	Enterobacteria_phage	2.3e-102	99.4
QAU16238.1\|1884822_1886997_+\|tail	phage tail protein	A0A0A7NV63	Enterobacteria_phage	0.0e+00	80.0
QAU16239.1\|1886998_1887526_+\|tail	tail fiber assembly protein	A0A0C4UR05	Shigella_phage	1.5e-85	86.3
QAU16240.1\|1887820_1889122_+	hypothetical protein	NA	NA	NA	NA
QAU16241.1\|1889632_1890823_+\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	1.8e-224	99.5
QAU16242.1\|1890835_1891354_+\|tail	phage major tail tube protein	A0A0F7LDZ1	Escherichia_phage	1.4e-93	100.0
QAU16243.1\|1891410_1891686_+\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	5.7e-41	100.0
QAU16244.1\|1891718_1891838_+\|tail	GpE family phage tail protein	A0A0F7LCR6	Escherichia_phage	1.0e-15	100.0
QAU16245.1\|1891830_1894278_+\|tail	phage tail tape measure protein	M1T2S3	Escherichia_phage	0.0e+00	95.3
QAU16246.1\|1894292_1894772_+\|tail	phage tail protein	Q7Y4C7	Escherichia_virus	7.3e-84	98.7
QAU16247.1\|1894771_1895935_+	phage late control D family protein	A0A0F7LDZ2	Escherichia_phage	3.1e-205	99.5
QAU16248.1\|1895980_1896235_+	DNA-binding transcriptional regulator	A0A0F7LDQ9	Escherichia_phage	6.1e-45	100.0
QAU16249.1\|1896508_1897870_-	U32 family peptidase	Q6DW11	Phage_TP	2.5e-217	99.5
1896337:1896364	attR	NA	NA	NA	NA
QAU16250.1\|1897972_1898269_-	type II toxin-antitoxin system RelE/ParE family toxin	NA	NA	NA	NA
QAU16251.1\|1898270_1898567_-	type II toxin-antitoxin system ParD family antitoxin	NA	NA	NA	NA
QAU16252.1\|1898775_1899108_-	DUF1508 domain-containing protein	NA	NA	NA	NA
QAU16253.1\|1899287_1900010_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	3.7e-31	33.6
QAU16254.1\|1900006_1901410_-	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	1.2e-33	29.4

DBSCAN-SWA_6

1947761 : 1955279

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU16286.1\|1947761_1949156_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	9.8e-20	31.9
QAU16287.1\|1949313_1950309_+	N-acetyl-alpha-D-glucosaminyl-diphospho-ditrans, octacis-undecaprenol 4-epimerase	A0A1V0QG29	Shearwaterpox_virus	2.5e-09	26.0
QAU16288.1\|1950540_1951434_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	1.0e-46	42.0
QAU16289.1\|1951805_1952891_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	2.3e-101	54.2
QAU16290.1\|1952890_1953790_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.7e-28	35.1
QAU16291.1\|1953847_1954726_+	glucose-1-phosphate thymidylyltransferase RfbA	A0A291LA53	Escherichia_phage	1.9e-106	64.5
QAU16292.1\|1954730_1955279_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	4.4e-48	54.4

DBSCAN-SWA_7

2430312 : 2528298

107

Enterobacteria_phage(35.59%)

portal,transposase,tail,integrase,protease,terminase,lysis

attL 2425602:2425618|attR 2459050:2459066

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2425602:2425618	attL	NA	NA	NA	NA
QAU16721.1\|2430312_2432739_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.7e-213	49.2
QAU19146.1\|2432937_2433243_-	DUF1161 domain-containing protein	NA	NA	NA	NA
QAU16722.1\|2433350_2434061_+	YnfC family lipoprotein	NA	NA	NA	NA
QAU16723.1\|2434063_2434624_-	spermidine N1-acetyltransferase	NA	NA	NA	NA
QAU16724.1\|2434658_2435000_-	DUF1283 family protein	NA	NA	NA	NA
QAU16725.1\|2435134_2435461_+	YnfA family protein	A0A218MNG8	uncultured_virus	2.9e-23	54.5
QAU16726.1\|2435666_2436881_+	D-galactonate dehydratase family protein	Q6A202	Oenococcus_phage	1.4e-46	29.0
QAU16727.1\|2436892_2437912_+	Zn-dependent oxidoreductase	E3SJ82	Synechococcus_phage	4.3e-17	26.2
QAU16728.1\|2437969_2438098_+	transporter	NA	NA	NA	NA
QAU16729.1\|2438099_2438876_-\|integrase	site-specific integrase	Q859D2	Escherichia_coli_phage	1.9e-97	64.4
QAU16730.1\|2438910_2440482_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-169	58.5
QAU16731.1\|2440501_2440849_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
QAU16732.1\|2440848_2441526_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
QAU19147.1\|2442121_2442358_-	DNA-binding protein	S4TND0	Salmonella_phage	6.1e-15	50.7
QAU16733.1\|2442445_2444917_-	exonuclease	A0A192Y6E0	Salmonella_phage	8.5e-59	57.5
QAU16734.1\|2445009_2445201_-	DUF1482 family protein	NA	NA	NA	NA
QAU16735.1\|2445197_2445386_-	cell division inhibition protein DicB	NA	NA	NA	NA
QAU16736.1\|2445888_2446089_+	hypothetical protein	NA	NA	NA	NA
QAU16737.1\|2446057_2446423_-	hypothetical protein	NA	NA	NA	NA
QAU16738.1\|2446434_2446587_-	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	6.6e-07	53.2
QAU16739.1\|2446779_2447187_-	helix-turn-helix domain-containing protein	I6PD69	Cronobacter_phage	2.5e-24	46.2
QAU16740.1\|2447264_2447492_+	transcriptional regulator	NA	NA	NA	NA
QAU16741.1\|2447475_2447997_+	hypothetical protein	NA	NA	NA	NA
QAU16742.1\|2447977_2448943_+	hypothetical protein	U5P0A0	Shigella_phage	2.9e-55	61.2
QAU16743.1\|2448983_2449385_+	DUF977 family protein	A0A0U2QQN3	Escherichia_phage	2.4e-64	95.5
QAU16744.1\|2449584_2450607_+	hypothetical protein	Q858S2	Enterobacteria_phage	2.5e-105	62.4
QAU16745.1\|2451259_2451463_+	hypothetical protein	NA	NA	NA	NA
QAU16746.1\|2451469_2451577_-	hypothetical protein	Q7Y2Q9	Escherichia_phage	2.5e-08	96.6
QAU16747.1\|2451621_2451834_+	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.7e-29	97.1
QAU16748.1\|2452050_2452302_+	hypothetical protein	NA	NA	NA	NA
QAU16749.1\|2452368_2452647_+	hypothetical protein	A0A077KB22	Edwardsiella_phage	6.1e-06	37.1
QAU16750.1\|2452648_2453698_+	DUF968 domain-containing protein	U5P0K4	Shigella_phage	6.5e-109	54.6
QAU16751.1\|2453710_2454067_+	RusA family crossover junction endodeoxyribonuclease	V5URS4	Shigella_phage	6.1e-35	62.7
QAU16752.1\|2454081_2454903_+	antitermination protein	K7P7B9	Enterobacteria_phage	2.1e-78	59.0
QAU16753.1\|2455436_2455763_+	hypothetical protein	NA	NA	NA	NA
QAU16754.1\|2455798_2455930_+	DUF3927 domain-containing protein	H6WZJ7	Escherichia_phage	3.7e-06	100.0
QAU16755.1\|2456296_2456725_+	cell envelope integrity protein TolA	NA	NA	NA	NA
QAU19148.1\|2456896_2457271_+	tolA family protein	NA	NA	NA	NA
QAU16756.1\|2457522_2457738_+\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.3e-32	94.4
QAU16757.1\|2457742_2458054_+	DUF1327 domain-containing protein	K7PGU6	Enterobacteria_phage	1.5e-24	62.6
QAU16758.1\|2458050_2458584_+	lysozyme	K7PLY1	Enterobacteria_phage	8.4e-97	93.2
QAU16759.1\|2458580_2459078_+	DUF2514 domain-containing protein	NA	NA	NA	NA
2459050:2459066	attR	NA	NA	NA	NA
QAU19149.1\|2459441_2459654_+	cold-shock protein CspI	A0A1W6JNX5	Morganella_phage	1.2e-22	74.3
QAU19150.1\|2459664_2459853_+	cold-shock protein	NA	NA	NA	NA
QAU19151.1\|2460000_2460156_+	hypothetical protein	NA	NA	NA	NA
QAU19152.1\|2460328_2460502_+	protein GnsB	NA	NA	NA	NA
QAU16760.1\|2460797_2461004_+	hypothetical protein	A0A0K2FJ18	Enterobacteria_phage	3.4e-22	79.4
QAU16761.1\|2461556_2462051_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	3.8e-83	99.4
QAU16762.1\|2462050_2464153_+\|terminase	phage terminase large subunit family protein	A0A291AWY5	Escherichia_phage	0.0e+00	96.7
QAU16763.1\|2464149_2464362_+	hypothetical protein	A5LH28	Enterobacteria_phage	1.1e-31	100.0
QAU16764.1\|2464361_2465870_+\|portal	phage portal protein	A5LH29	Enterobacteria_phage	6.6e-288	99.4
QAU16765.1\|2465814_2467842_+\|protease	Clp protease ClpP	K7PGT6	Enterobacteria_phage	0.0e+00	99.5
QAU16766.1\|2467927_2468251_+	DUF2190 family protein	A0A291AWX2	Escherichia_phage	8.5e-52	100.0
QAU16767.1\|2468243_2468519_+	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	3.8e-45	98.9
QAU16768.1\|2468530_2469121_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	7.2e-81	80.1
QAU16769.1\|2469117_2469519_+\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	2.4e-72	99.2
QAU16770.1\|2469529_2470273_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	7.3e-131	98.4
QAU19153.1\|2470333_2470720_+\|tail	phage minor tail protein G	A0A291AWW5	Escherichia_phage	4.9e-62	96.1
QAU16771.1\|2470728_2471046_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	4.4e-53	100.0
QAU16772.1\|2471029_2474095_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	0.0e+00	98.1
QAU16773.1\|2474094_2474424_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.7e-60	100.0
QAU16774.1\|2474433_2475132_+\|tail	phage minor tail protein L	A5LH40	Enterobacteria_phage	1.3e-134	99.6
QAU16775.1\|2475137_2475881_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	9.2e-150	98.4
QAU16776.1\|2475778_2476426_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	4.7e-110	94.9
QAU16777.1\|2476486_2479966_+	host specificity protein J	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
QAU16778.1\|2480033_2480633_+	Ail/Lom family protein	Q9EV15	Enterobacteria_phage	1.5e-102	92.0
QAU16779.1\|2480697_2483070_+\|tail	phage tail protein	A0A0E3M0V5	Enterobacteria_phage	4.1e-103	47.5
QAU16780.1\|2483066_2483345_+	hypothetical protein	A0A0E3GMJ7	Enterobacteria_phage	3.8e-24	54.3
QAU16781.1\|2483355_2484396_+\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	4.5e-155	80.5
QAU16782.1\|2484438_2484732_+	hypothetical protein	NA	NA	NA	NA
QAU16783.1\|2484959_2485550_-	recombinase family protein	A0A0A7NPV4	Enterobacteria_phage	1.6e-24	38.8
QAU16784.1\|2485866_2486100_-	cold shock protein YdfK	A0A192Y6D5	Salmonella_phage	1.1e-32	88.3
QAU16785.1\|2486168_2486282_-	hypothetical protein	A0A1C9IHU6	Salmonella_phage	8.4e-07	80.6
QAU16786.1\|2486886_2488170_+	MFS transporter	NA	NA	NA	NA
QAU16787.1\|2488259_2489720_+	mannitol dehydrogenase family protein	G8DCZ3	Micromonas_pusilla_virus	6.6e-43	30.1
QAU16788.1\|2489755_2489959_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	1.6e-11	55.2
QAU16789.1\|2490135_2490822_-	GntR family transcriptional regulator	NA	NA	NA	NA
QAU16790.1\|2490910_2491657_-	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
QAU16791.1\|2491793_2493839_+	peptidyl-dipeptidase Dcp	NA	NA	NA	NA
QAU16792.1\|2494204_2494597_+	YdeI family stress tolerance OB fold protein	NA	NA	NA	NA
QAU16793.1\|2494851_2495742_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-19	37.0
QAU16794.1\|2495960_2496056_-	protein MgtS	NA	NA	NA	NA
QAU16795.1\|2496182_2497370_-	efflux MFS transporter YdeE	NA	NA	NA	NA
QAU16796.1\|2497564_2498464_+	O-acetylserine/cysteine exporter	NA	NA	NA	NA
QAU16797.1\|2498494_2498713_-	multiple antibiotic resistance protein MarB	NA	NA	NA	NA
QAU16798.1\|2498744_2499128_-	MDR efflux pump AcrAB transcriptional activator MarA	D0R0F8	Streptococcus_phage	4.7e-09	32.3
QAU16799.1\|2499148_2499583_-	multiple antibiotic resistance transcriptional regulator MarR	NA	NA	NA	NA
QAU16800.1\|2499794_2500460_+	NAAT family transporter MarC	NA	NA	NA	NA
QAU16801.1\|2500484_2501675_-	sugar efflux transporter	NA	NA	NA	NA
QAU16802.1\|2501824_2502940_-	putative protein YneK	NA	NA	NA	NA
QAU16803.1\|2503017_2503899_-	LysR family transcriptional regulator	NA	NA	NA	NA
QAU16804.1\|2503999_2505388_+	succinate-semialdehyde dehydrogenase	NA	NA	NA	NA
QAU16805.1\|2505451_2506378_+	glutaminase 2	NA	NA	NA	NA
QAU16806.1\|2506377_2506737_+	DUF4186 domain-containing protein	NA	NA	NA	NA
QAU16807.1\|2506875_2508294_+	diguanylate cyclase	A0A127AWB9	Bacillus_phage	1.4e-18	36.1
QAU16808.1\|2508521_2509973_+	tagaturonate reductase	NA	NA	NA	NA
QAU16809.1\|2510169_2511084_+	hypothetical protein	NA	NA	NA	NA
QAU16810.1\|2511087_2511846_-	trans-aconitate 2-methyltransferase	NA	NA	NA	NA
QAU16811.1\|2511902_2512193_-	autoinducer 2-degrading protein LsrG	NA	NA	NA	NA
QAU16812.1\|2512216_2513092_-	3-hydroxy-5-phosphonooxypentane-2,4-dione thiolase	NA	NA	NA	NA
QAU16813.1\|2513118_2514141_-	autoinducer 2 ABC transporter substrate-binding protein LsrB	NA	NA	NA	NA
QAU16814.1\|2514152_2515145_-	autoinducer 2 import system permease LsrD	NA	NA	NA	NA
QAU16815.1\|2515144_2516173_-	autoinducer 2 ABC transporter permease LsrC	NA	NA	NA	NA
QAU16816.1\|2516166_2517702_-	autoinducer 2 ABC transporter ATP-binding protein LsrA	A0A2H4PQG7	Staphylococcus_phage	3.2e-16	24.0
QAU16817.1\|2517950_2518904_+	LsrR family transcriptional regulator	NA	NA	NA	NA
QAU16818.1\|2518982_2520575_+	autoinducer-2 kinase	NA	NA	NA	NA
QAU16819.1\|2527025_2528298_+\|transposase	IS3-like element IS2 family transposase	Q9ZXG3	Shigella_phage	1.4e-177	99.3

DBSCAN-SWA_8

3154632 : 3244040

Salmonella_phage(61.4%)

portal,plate,tRNA,tail,protease,integrase,terminase,head,capsid,lysis

attL 3209736:3209762|attR 3244115:3244141

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU17362.1\|3154632_3155925_-\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
QAU17363.1\|3156015_3157359_-	replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	41.0
QAU19182.1\|3157369_3157981_-	outer membrane lipoprotein carrier protein LolA	NA	NA	NA	NA
QAU17364.1\|3158139_3162210_-	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
QAU17365.1\|3162344_3162839_-	leucine-responsive regulatory protein	NA	NA	NA	NA
QAU17366.1\|3163382_3164348_+	thioredoxin-disulfide reductase	A0A2I2L5E1	Orpheovirus	1.1e-62	44.6
QAU17367.1\|3164470_3166237_+	ATP-binding/permease CydD	W8CYL7	Bacillus_phage	4.1e-23	24.3
QAU17368.1\|3166237_3167959_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	W8CYL7	Bacillus_phage	2.9e-21	25.2
QAU17369.1\|3168000_3168705_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
QAU17370.1\|3168989_3169208_+	translation initiation factor IF-1	NA	NA	NA	NA
QAU17371.1\|3169955_3172232_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.9e-166	42.5
QAU17372.1\|3172262_3172583_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.6e-13	44.4
QAU17373.1\|3172905_3173130_+	cold-shock protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	2.3e-16	61.2
QAU17374.1\|3173202_3175149_-	MacB family efflux pump subunit	G9BWD6	Planktothrix_phage	6.5e-38	40.1
QAU17375.1\|3175145_3176261_-	MacA family efflux pump subunit	NA	NA	NA	NA
QAU17376.1\|3176375_3177368_+	DUF535 domain-containing protein	NA	NA	NA	NA
QAU17377.1\|3177364_3179023_-	ATP-dependent endonuclease	NA	NA	NA	NA
QAU17378.1\|3179448_3180144_+	aquaporin	NA	NA	NA	NA
QAU17379.1\|3180601_3181501_+	lysine exporter LysO family protein	NA	NA	NA	NA
QAU17380.1\|3181465_3181645_-	hypothetical protein	NA	NA	NA	NA
QAU17381.1\|3181643_3183296_+	hydroxylamine reductase	NA	NA	NA	NA
QAU17382.1\|3183307_3184276_+	hybrid-cluster NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
QAU17383.1\|3184408_3186127_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	6.8e-31	24.0
QAU17384.1\|3186163_3187165_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
QAU17385.1\|3187175_3188606_+	SDR family oxidoreductase	NA	NA	NA	NA
QAU19183.1\|3188704_3189718_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
QAU17386.1\|3189714_3190545_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	5.7e-07	30.0
QAU17387.1\|3190541_3190865_-	heavy metal-binding domain-containing protein	NA	NA	NA	NA
QAU17388.1\|3190919_3191108_+	hypothetical protein	NA	NA	NA	NA
QAU17389.1\|3191075_3192845_-	pentapeptide repeat-containing protein	NA	NA	NA	NA
QAU17390.1\|3193492_3194008_+	lipoprotein	NA	NA	NA	NA
QAU17391.1\|3194225_3194954_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	6.0e-29	36.7
QAU17392.1\|3194971_3195703_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
QAU17393.1\|3195709_3196426_+	arginine ABC transporter permease ArtQ	NA	NA	NA	NA
QAU17394.1\|3196425_3197094_+	arginine ABC transporter permease ArtM	NA	NA	NA	NA
QAU17395.1\|3197319_3198051_+	arginine ABC transporter substrate-binding protein	NA	NA	NA	NA
QAU17396.1\|3198079_3199207_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	3.5e-28	27.6
QAU17397.1\|3199247_3199736_-	DUF2593 family protein	NA	NA	NA	NA
QAU17398.1\|3199795_3200641_-	spermidine/putrescine ABC transporter permease	NA	NA	NA	NA
QAU17399.1\|3200637_3201591_-	putrescine ABC transporter permease PotH	NA	NA	NA	NA
QAU17400.1\|3201600_3202734_-	putrescine ABC transporter ATP-binding subunit PotG	G3M9Y6	Bacillus_virus	1.4e-29	34.0
QAU17401.1\|3202828_3203941_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
QAU17402.1\|3204291_3204768_-	YbjN domain-containing protein	NA	NA	NA	NA
QAU17403.1\|3204855_3205758_-	30S ribosomal protein S6--L-glutamate ligase	I3ULC9	Synechococcus_phage	2.6e-37	34.4
QAU17404.1\|3205818_3206541_-	nitroreductase NfsA	NA	NA	NA	NA
QAU17405.1\|3206524_3206812_-	DUF1418 family protein	NA	NA	NA	NA
QAU17406.1\|3206971_3207229_+	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	7.8e-24	63.1
QAU17407.1\|3207258_3207636_-	hypothetical protein	NA	NA	NA	NA
QAU17408.1\|3207905_3209591_+	transporter	NA	NA	NA	NA
3209736:3209762	attL	NA	NA	NA	NA
QAU19184.1\|3209826_3210045_-	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-20	69.0
QAU17409.1\|3210135_3211236_-	phage late control D family protein	E5G6Q3	Salmonella_phage	1.0e-176	85.2
QAU17410.1\|3211232_3211718_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.6e-65	79.4
QAU17411.1\|3211714_3214792_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	69.3
QAU17412.1\|3214784_3214904_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
QAU17413.1\|3214918_3215221_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	3.5e-39	88.0
QAU17414.1\|3215275_3215791_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
QAU17415.1\|3215800_3216973_-\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	7.8e-204	90.0
QAU17416.1\|3217106_3217709_-\|tail	tail fiber assembly protein	M1SV83	Escherichia_phage	3.7e-93	84.4
QAU17417.1\|3217708_3219250_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	7.6e-199	71.2
QAU17418.1\|3219246_3219852_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	1.2e-110	92.5
QAU17419.1\|3219844_3220753_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	3.5e-143	90.7
QAU17420.1\|3220739_3221099_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.8e-51	85.7
QAU17421.1\|3221095_3221674_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	7.2e-94	86.5
QAU17422.1\|3221777_3222584_+	hypothetical protein	NA	NA	NA	NA
QAU17423.1\|3222525_3222972_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	4.0e-60	84.2
QAU17424.1\|3222964_3223396_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	9.9e-72	93.7
QAU17425.1\|3223361_3223562_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	3.9e-23	77.3
QAU17426.1\|3223491_3223920_-\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	1.9e-46	75.2
QAU17427.1\|3223916_3224294_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	8.8e-16	40.0
QAU19185.1\|3224295_3224769_-	lysozyme	E5G6N1	Salmonella_phage	8.3e-80	90.4
QAU17428.1\|3224788_3225004_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
QAU17429.1\|3225007_3225211_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
QAU17430.1\|3225210_3225675_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	6.4e-77	89.6
QAU17431.1\|3225770_3226421_-	hypothetical protein	E5G6M7	Salmonella_phage	9.6e-111	95.8
QAU17432.1\|3226424_3227483_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	8.4e-181	93.1
QAU17433.1\|3227499_3228333_-\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	2.8e-123	91.0
QAU17434.1\|3228475_3230242_+\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
QAU17435.1\|3230241_3231276_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	2.3e-167	85.5
QAU17436.1\|3231312_3233094_-	DUF262 domain-containing protein	NA	NA	NA	NA
QAU17437.1\|3233627_3234686_+	hypothetical protein	NA	NA	NA	NA
QAU17438.1\|3234860_3235166_-	DinI family protein	E5G6M1	Salmonella_phage	2.3e-35	98.7
QAU19186.1\|3235104_3235293_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
QAU17439.1\|3235446_3237861_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.6
QAU17440.1\|3237857_3238715_-	DNA adenine methylase	E5G6L8	Salmonella_phage	4.1e-162	98.2
QAU17441.1\|3238711_3238939_-	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	7.8e-36	98.7
QAU17442.1\|3238938_3239172_-	DUF2732 family protein	E5G6L6	Salmonella_phage	6.4e-33	98.7
QAU17443.1\|3239239_3239581_-	hypothetical protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
QAU17444.1\|3239544_3239745_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-33	98.5
QAU17445.1\|3239752_3240262_-	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.3e-86	98.2
QAU17446.1\|3240294_3240516_-	regulator	NA	NA	NA	NA
QAU17447.1\|3240611_3241208_+	hypothetical protein	A0A1S6KZZ7	Salmonella_phage	1.4e-39	42.9
QAU17448.1\|3241228_3242905_+	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	9.8e-83	66.8
QAU17449.1\|3242987_3244040_+\|integrase	integrase	A0A218M4I3	Erwinia_phage	4.8e-104	55.8
3244115:3244141	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3538268 : 3623493

Enterobacteria_phage(52.46%)

transposase,tail,protease,integrase,terminase,head,capsid,lysis

attL 3572532:3572578|attR 3623507:3623553

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU17706.1\|3538268_3539381_+\|transposase	IS4-like element IS421 family transposase	NA	NA	NA	NA
QAU17707.1\|3539573_3539726_-	protein HokE	NA	NA	NA	NA
QAU17708.1\|3540177_3541296_+	glutamate--cysteine ligase	NA	NA	NA	NA
QAU17709.1\|3541361_3541610_+	DUF1158 domain-containing protein	NA	NA	NA	NA
QAU17710.1\|3541674_3542058_+	MmcQ/YjbR family DNA-binding protein	NA	NA	NA	NA
QAU17711.1\|3542136_3542790_+	oxygen-insensitive NAD(P)H nitroreductase	NA	NA	NA	NA
QAU17712.1\|3542897_3544145_+	mechanosensitive ion channel family protein	NA	NA	NA	NA
QAU17713.1\|3544212_3545589_-	phenylalanine transporter	NA	NA	NA	NA
QAU17714.1\|3545690_3548834_-	Cu(+)/Ag(+) efflux RND transporter permease subunit CusA	S5VTK5	Leptospira_phage	5.7e-60	22.4
QAU17715.1\|3548845_3550069_-	Cu(+)/Ag(+) efflux RND transporter periplasmic adaptor subunit CusB	NA	NA	NA	NA
QAU17716.1\|3550084_3550417_-	Cu(+)/Ag(+) efflux RND transporter periplasmic metallochaperone CusF	NA	NA	NA	NA
QAU17717.1\|3550440_3551823_-	efflux transporter outer membrane subunit	NA	NA	NA	NA
QAU17718.1\|3551979_3552663_+	copper response regulator transcription factor CusR	W8CYM9	Bacillus_phage	1.0e-30	35.1
QAU17719.1\|3552652_3554101_+	Cu(+)/Ag(+) sensor histidine kinase CusS	A0A1V0SGX0	Hokovirus	2.3e-11	26.1
QAU17720.1\|3554844_3556746_+	type VI secretion system tip protein VgrG	A0A077K8Q4	Ralstonia_phage	6.0e-28	26.1
QAU17721.1\|3556773_3557235_+	DUF1795 domain-containing protein	NA	NA	NA	NA
QAU17722.1\|3557254_3562108_+	type IV secretion protein Rhs	A0A2H4JFP5	uncultured_Caudovirales_phage	9.9e-19	31.8
QAU17723.1\|3562104_3562494_+	hypothetical protein	NA	NA	NA	NA
QAU17724.1\|3563347_3564484_+\|transposase	ISAs1 family transposase	NA	NA	NA	NA
QAU17725.1\|3564681_3565602_+	phage adsorption protein NrfB	NA	NA	NA	NA
QAU17726.1\|3567681_3570654_+	phage receptor	NA	NA	NA	NA
QAU17727.1\|3570654_3571545_+	DUF4434 family protein	NA	NA	NA	NA
QAU17728.1\|3571727_3572489_+	AraC family transcriptional regulator	NA	NA	NA	NA
3572532:3572578	attL	NA	NA	NA	NA
QAU17729.1\|3572906_3573584_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.3e-21	46.0
QAU17730.1\|3573583_3573931_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-46	76.6
QAU17731.1\|3573950_3575522_+\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-169	58.5
QAU17732.1\|3575708_3576662_+\|protease	omptin family outer membrane protease OmpT	NA	NA	NA	NA
QAU17733.1\|3576910_3577660_-	transcriptional regulator	NA	NA	NA	NA
QAU17734.1\|3578672_3579713_-\|tail	tail fiber domain-containing protein	A0A0E3M4A9	Enterobacteria_phage	2.1e-176	91.9
QAU17735.1\|3579725_3579995_-	hypothetical protein	NA	NA	NA	NA
QAU17736.1\|3579994_3582352_-\|tail	phage tail protein	A0A1X7QGG5	Escherichia_phage	2.2e-117	50.1
QAU17737.1\|3582416_3583016_-	Ail/Lom family protein	Q9EV15	Enterobacteria_phage	4.4e-102	92.5
QAU17738.1\|3583171_3584444_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-170	95.7
QAU17739.1\|3587959_3588592_-\|tail	tail assembly protein	A0A2R9YJH6	Escherichia_phage	2.2e-96	99.5
QAU17740.1\|3588528_3589272_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.9e-149	97.6
QAU17741.1\|3589277_3589976_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	2.3e-134	100.0
QAU17742.1\|3589975_3590305_-\|tail	phage tail protein	A0A0K2FIE9	Enterobacteria_phage	3.4e-56	96.3
QAU17743.1\|3590301_3592863_-\|tail	phage tail tape measure protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	92.5
QAU17744.1\|3592855_3593290_-\|tail	phage tail assembly protein T	A0A0K2FJB3	Enterobacteria_phage	1.0e-63	98.3
QAU17745.1\|3593271_3593694_-\|tail	phage minor tail protein G	A0A0K2FIQ8	Enterobacteria_phage	2.8e-71	97.9
QAU17746.1\|3593709_3594450_-\|tail	phage tail protein	A0A0K2FJ05	Enterobacteria_phage	1.7e-127	95.9
QAU17747.1\|3594457_3594853_-\|tail	phage tail protein	A0A0K2FIF4	Enterobacteria_phage	1.0e-70	100.0
QAU17748.1\|3594849_3595428_-\|tail	phage tail protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	99.5
QAU17749.1\|3595439_3595793_-\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	2.0e-62	100.0
QAU17750.1\|3595804_3596203_-	DNA-packaging protein FI	A0A0K2FIR1	Enterobacteria_phage	3.1e-64	100.0
QAU17751.1\|3596244_3597270_-\|capsid	major capsid protein	C6ZCY2	Enterobacteria_phage	1.0e-191	99.4
QAU17752.1\|3597325_3597658_-\|head	head decoration protein	C6ZCY1	Enterobacteria_phage	2.2e-55	100.0
QAU17753.1\|3597667_3598987_-	S49 family peptidase	A0A2I6TC87	Escherichia_phage	6.9e-233	98.2
QAU17754.1\|3600564_3600771_-\|head,tail	Lambda prophage-derived head-to-tail joining protein W	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
QAU17755.1\|3600767_3602693_-\|terminase	phage terminase large subunit family protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.7
QAU17756.1\|3602667_3603213_-\|terminase	terminase small subunit	A0A0K2FIG2	Enterobacteria_phage	2.8e-95	100.0
QAU17757.1\|3603328_3603586_+	hypothetical protein	A0A0K2FJC5	Escherichia_phage	8.9e-12	97.1
QAU17758.1\|3603601_3603835_+	DUF3950 domain-containing protein	A0A0K2FIR8	Escherichia_phage	7.3e-21	94.4
QAU17759.1\|3603891_3604302_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	1.3e-52	76.3
QAU17760.1\|3604653_3604806_-	hypothetical protein	K7PKL2	Enterobacteria_phage	3.1e-20	96.0
QAU17761.1\|3604834_3605041_-	hypothetical protein	H6WRZ6	Salmonella_phage	5.3e-31	98.5
QAU17762.1\|3605257_3605755_-	lysozyme	A0A1B5FP97	Escherichia_phage	4.2e-90	97.6
QAU17763.1\|3605754_3605970_-\|lysis	lysis protein S	A5LH82	Enterobacteria_phage	1.2e-33	98.6
QAU19199.1\|3606157_3606889_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
QAU17764.1\|3607240_3608200_-	DUF523 and DUF1722 domain-containing protein	NA	NA	NA	NA
QAU17765.1\|3608392_3608917_+	outer membrane lipoprotein Blc	A0A1W6JNX6	Morganella_phage	1.1e-48	54.1
QAU17766.1\|3609072_3609450_-	antitermination protein	Q777W5	Enterobacteria_phage	8.1e-54	83.3
QAU17767.1\|3609535_3609676_-	YlcG family protein	K7PHH3	Enterobacteria_phage	6.5e-09	69.8
QAU17768.1\|3609672_3610035_-	crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	4.3e-60	96.5
QAU17769.1\|3610031_3610322_-	DUF1364 domain-containing protein	K7PGZ6	Enterobacteria_phage	2.8e-46	92.7
QAU17770.1\|3610314_3610485_-	hypothetical protein	K7P7K0	Enterobacteria_phage	1.4e-13	69.8
QAU17771.1\|3610484_3610940_-	DNA base-flipping protein YbcN	I6PD71	Cronobacter_phage	4.9e-61	67.5
QAU17772.1\|3610936_3611038_-	hypothetical protein	NA	NA	NA	NA
QAU17773.1\|3611127_3611484_-	hypothetical protein	NA	NA	NA	NA
QAU17774.1\|3611945_3612269_-	hypothetical protein	NA	NA	NA	NA
QAU17775.1\|3612380_3613907_-	recombinase family protein	Q3HQV4	Burkholderia_phage	3.6e-31	27.7
QAU17776.1\|3613964_3614072_-	hypothetical protein	NA	NA	NA	NA
QAU17777.1\|3614163_3614496_-	multidrug SMR transporter	NA	NA	NA	NA
QAU17778.1\|3614563_3614866_-	protein ren	A0A0N6WES4	Escherichia_phage	1.7e-41	93.5
QAU17779.1\|3614862_3615564_-	Replication protein P	M1FJ72	Enterobacteria_phage	7.9e-127	97.4
QAU19200.1\|3615560_3616490_-	Replication protein O	A0A0M5M7Y1	Salmonella_phage	4.0e-110	63.8
QAU17780.1\|3616576_3617116_-	regulator	M9NZI6	Enterobacteria_phage	1.5e-61	66.1
QAU17781.1\|3617185_3617416_-	helix-turn-helix domain-containing protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
QAU19201.1\|3617520_3618210_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	2.8e-92	75.0
QAU17782.1\|3618804_3619011_+	cell division inhibitor protein	K7PM31	Enterobacteria_phage	7.1e-28	83.8
QAU17783.1\|3619087_3619384_+	host-nuclease inhibitor protein Gam	A0A1I9LJN1	Stx_converting_phage	3.6e-49	99.0
QAU17784.1\|3619389_3620175_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	6.9e-148	99.2
QAU17785.1\|3620171_3620852_+	exonuclease	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
QAU19202.1\|3620848_3621031_+	DUF1317 family protein	A0A1U8QQC1	Enterobacteria_phage	6.9e-27	96.7
QAU17786.1\|3621003_3621195_+	DUF1382 family protein	A0A0P0ZC67	Stx2-converting_phage	2.1e-26	98.4
QAU17787.1\|3621586_3621805_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	5.4e-34	97.2
QAU17788.1\|3621852_3622131_+	DUF4222 domain-containing protein	M1FPC8	Enterobacteria_phage	4.9e-48	97.8
QAU17789.1\|3622102_3622474_+	DNA-binding protein	M1FJ59	Enterobacteria_phage	2.1e-46	81.0
QAU17790.1\|3622329_3623493_+\|integrase	site-specific integrase	A0A088CD23	Shigella_phage	3.4e-199	86.3
3623507:3623553	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3888740 : 3935764

Enterobacteria_phage(20.0%)

integrase,transposase,plate

attL 3888636:3888655|attR 3901849:3901868

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3888636:3888655	attL	NA	NA	NA	NA
QAU19211.1\|3888740_3890075_+\|integrase	integrase	NA	NA	NA	NA
QAU18026.1\|3890155_3890833_-	hypothetical protein	A0A1D7XFF4	Escherichia_phage	1.7e-46	51.8
QAU18027.1\|3890880_3892722_-	hypothetical protein	A0A140G5Z0	Enterobacteria_phage	4.2e-18	27.5
QAU18028.1\|3892756_3892954_-	hypothetical protein	NA	NA	NA	NA
QAU18029.1\|3893109_3894141_-	hypothetical protein	NA	NA	NA	NA
QAU18030.1\|3894155_3894539_-	hypothetical protein	NA	NA	NA	NA
QAU18031.1\|3894543_3894741_-	ACP S-malonyltransferase	NA	NA	NA	NA
QAU18032.1\|3895722_3896025_-	transporter	NA	NA	NA	NA
QAU18033.1\|3896024_3896228_-	ABC transporter ATPase	NA	NA	NA	NA
QAU18034.1\|3896285_3896666_-	hypothetical protein	NA	NA	NA	NA
QAU18035.1\|3896800_3897370_-	transcriptional regulator	NA	NA	NA	NA
QAU18036.1\|3897613_3897814_-	hypothetical protein	NA	NA	NA	NA
QAU18037.1\|3899227_3899464_-	hypothetical protein	NA	NA	NA	NA
QAU18038.1\|3899919_3900471_-	hypothetical protein	A0A1L5C2A2	Pseudoalteromonas_phage	1.2e-05	60.0
QAU18039.1\|3901476_3901791_+	hypothetical protein	NA	NA	NA	NA
QAU18040.1\|3902039_3903293_-	gamma-glutamyl-phosphate reductase	A0A1X9I5D4	Streptococcus_phage	3.4e-96	47.5
3901849:3901868	attR	NA	NA	NA	NA
QAU18041.1\|3903304_3904408_-	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	2.4e-61	40.1
QAU18042.1\|3904695_3905751_+	phosphoporin PhoE	Q1MVN1	Enterobacteria_phage	2.9e-117	60.6
QAU18043.1\|3905789_3906191_-	sigma factor-binding protein Crl	NA	NA	NA	NA
QAU18044.1\|3906248_3907493_-	esterase	NA	NA	NA	NA
QAU18045.1\|3907584_3908043_-	xanthine phosphoribosyltransferase	NA	NA	NA	NA
QAU18046.1\|3908303_3909761_+	cytosol nonspecific dipeptidase	NA	NA	NA	NA
QAU19212.1\|3909808_3910051_+	hypothetical protein	NA	NA	NA	NA
QAU19213.1\|3910067_3910577_-	metal-dependent hydrolase	NA	NA	NA	NA
QAU18047.1\|3910638_3911253_-	peptide chain release factor H	NA	NA	NA	NA
QAU18048.1\|3911249_3912401_-	RNA ligase RtcB family protein	A0A222ZMP7	Mycobacterium_phage	3.5e-31	30.9
QAU18049.1\|3912579_3913032_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
QAU18050.1\|3913041_3913440_-	type II toxin-antitoxin system YafO family toxin	NA	NA	NA	NA
QAU18051.1\|3913442_3913736_-	type I toxin-antitoxin system antitoxin YafN	NA	NA	NA	NA
QAU18052.1\|3913787_3914843_-	DNA polymerase IV	NA	NA	NA	NA
QAU18053.1\|3914913_3915684_-	putative lateral flagellar export/assembly protein LafU	NA	NA	NA	NA
QAU18054.1\|3915643_3917383_+	flagellar type III secretion system protein FlhA	NA	NA	NA	NA
QAU18055.1\|3917480_3918254_-	peptidoglycan endopeptidase	A0A1V0DZX6	Clostridioides_phage	9.3e-20	38.5
QAU18056.1\|3918439_3918700_+	type II toxin-antitoxin system antitoxin DinJ	NA	NA	NA	NA
QAU19214.1\|3918791_3918980_+	type II toxin-antitoxin system mRNA interferase toxin, RelE/StbE family	NA	NA	NA	NA
QAU18057.1\|3919135_3919876_+	murein L,D-transpeptidase	NA	NA	NA	NA
QAU18058.1\|3919846_3920614_-	class II glutamine amidotransferase	NA	NA	NA	NA
QAU18059.1\|3920729_3921308_-	D-sedoheptulose 7-phosphate isomerase	A0A067XQR2	Caulobacter_phage	2.5e-14	32.0
QAU18060.1\|3921547_3923992_+	acyl-CoA dehydrogenase	NA	NA	NA	NA
QAU18061.1\|3924034_3924508_-	inhibitor of vertebrate lysozyme	NA	NA	NA	NA
QAU18062.1\|3924661_3925432_+	amidohydrolase	NA	NA	NA	NA
QAU18063.1\|3925895_3927108_+\|transposase	IS3 family transposase	Q716C2	Shigella_phage	4.7e-103	58.4
QAU18064.1\|3927295_3927814_-	Hcp family type VI secretion system effector	NA	NA	NA	NA
QAU18065.1\|3928510_3929011_+	type VI secretion system contractile sheath small subunit	NA	NA	NA	NA
QAU18066.1\|3929045_3929270_+	hypothetical protein	NA	NA	NA	NA
QAU18067.1\|3929320_3930796_+	type VI secretion system contractile sheath large subunit	NA	NA	NA	NA
QAU18068.1\|3930802_3931216_+\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA
QAU18069.1\|3931219_3933070_+\|plate	type VI secretion system baseplate subunit TssF	NA	NA	NA	NA
QAU18070.1\|3933033_3934116_+\|plate	type VI secretion system baseplate subunit TssG	NA	NA	NA	NA
QAU18071.1\|3934651_3935764_-\|transposase	IS4-like element IS421 family transposase	NA	NA	NA	NA

DBSCAN-SWA_11

4283141 : 4335227

Stx2-converting_phage(40.0%)

transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU18361.1\|4283141_4284414_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	4.7e-170	95.3
QAU18362.1\|4284339_4284558_-	hypothetical protein	NA	NA	NA	NA
QAU18363.1\|4284554_4284929_-	toxin	NA	NA	NA	NA
QAU18364.1\|4285018_4285387_-	type IV toxin-antitoxin system YeeU family antitoxin	NA	NA	NA	NA
QAU18365.1\|4285549_4285771_-	DUF987 domain-containing protein	A0A142F0X9	Klebsiella_phage	7.2e-10	44.4
QAU18366.1\|4285833_4286310_-	DNA repair protein RadC	NA	NA	NA	NA
QAU18367.1\|4286325_4286799_-	antirestriction protein	A9J566	Pseudomonas_phage	1.5e-12	30.3
QAU18368.1\|4287140_4287959_-	DUF945 domain-containing protein	A0A2C9CX26	Yersinia_phage	4.2e-47	40.1
QAU19231.1\|4287979_4288114_-	cytoplasmic protein	NA	NA	NA	NA
QAU18369.1\|4288113_4288272_-	DUF905 domain-containing protein	NA	NA	NA	NA
QAU18370.1\|4288342_4291189_-	autotransporter adhesin Ag43	NA	NA	NA	NA
QAU18371.1\|4291561_4292434_-	GTPase family protein	NA	NA	NA	NA
QAU18372.1\|4292518_4293436_-	hypothetical protein	NA	NA	NA	NA
QAU18373.1\|4293568_4293784_+	hypothetical protein	NA	NA	NA	NA
QAU18374.1\|4294269_4294467_-	hypothetical protein	NA	NA	NA	NA
QAU18375.1\|4294637_4295240_-	hypothetical protein	NA	NA	NA	NA
QAU18376.1\|4295334_4295613_-	AlpA family transcriptional regulator	NA	NA	NA	NA
QAU18377.1\|4295581_4295740_-	transcriptional regulator	NA	NA	NA	NA
QAU18378.1\|4295681_4295948_+	hypothetical protein	NA	NA	NA	NA
QAU18379.1\|4296284_4296425_+	hemolysin activation protein	NA	NA	NA	NA
QAU18380.1\|4296770_4296971_-	hypothetical protein	NA	NA	NA	NA
QAU18381.1\|4297169_4297739_+	inovirus Gp2 family protein	NA	NA	NA	NA
QAU18382.1\|4297998_4298400_+	hypothetical protein	NA	NA	NA	NA
QAU18383.1\|4298387_4298822_+	hypothetical protein	NA	NA	NA	NA
QAU18384.1\|4298821_4299058_+	hypothetical protein	NA	NA	NA	NA
QAU18385.1\|4299176_4299557_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBP6	Stx2-converting_phage	7.1e-66	99.2
QAU18386.1\|4299553_4299901_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	1.4e-60	98.3
QAU18387.1\|4299950_4301336_+\|transposase	IS66 family transposase	A0A0P0ZBS5	Stx2-converting_phage	2.2e-258	89.1
QAU18388.1\|4301574_4302933_-	esterase-like activity of phytase family protein	NA	NA	NA	NA
QAU18389.1\|4303311_4303503_+	hypothetical protein	A0A0N7BTS3	Escherichia_phage	2.4e-06	96.2
QAU18390.1\|4303665_4303923_-	biofilm development YmgB/AriR family protein	NA	NA	NA	NA
QAU18391.1\|4306115_4307060_+	lauroyl-Kdo(2)-lipid IV(A) myristoyltransferase	NA	NA	NA	NA
QAU18392.1\|4307240_4308380_+\|transposase	IS3 family transposase	A0A0P0I4A4	Acinetobacter_phage	7.9e-68	44.7
QAU18393.1\|4308533_4310531_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	7.4e-21	25.9
QAU18394.1\|4310475_4310634_+\|holin	choline transporter	NA	NA	NA	NA
QAU18395.1\|4310593_4311871_+	DUF2254 domain-containing protein	NA	NA	NA	NA
QAU18396.1\|4312118_4312775_+	TetR family transcriptional regulator	NA	NA	NA	NA
QAU18397.1\|4312832_4312937_-	alcohol dehydrogenase	NA	NA	NA	NA
QAU18398.1\|4312955_4313084_-	alcohol dehydrogenase	NA	NA	NA	NA
QAU18399.1\|4313174_4313456_-	hypothetical protein	NA	NA	NA	NA
QAU19232.1\|4313854_4314055_+	hypothetical protein	NA	NA	NA	NA
QAU18400.1\|4314182_4314281_+	acetolactate synthase	NA	NA	NA	NA
QAU18401.1\|4314282_4315065_-	DeoR family transcriptional regulator	NA	NA	NA	NA
QAU18402.1\|4315370_4316291_+	ribokinase	NA	NA	NA	NA
QAU18403.1\|4316318_4317635_+	L-fucose:H+ symporter permease	NA	NA	NA	NA
QAU18404.1\|4317646_4318660_+	DUF4432 domain-containing protein	NA	NA	NA	NA
QAU18405.1\|4319144_4319336_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	8.3e-15	65.6
QAU18406.1\|4319582_4320839_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
QAU18407.1\|4320851_4321139_-	PTS sugar transporter subunit IIB	NA	NA	NA	NA
QAU18408.1\|4321154_4321598_-	PTS sugar transporter subunit IIA	NA	NA	NA	NA
QAU18409.1\|4321868_4322900_+	LacI family DNA-binding transcriptional regulator	C6ZCU4	Enterobacteria_phage	1.4e-18	27.0
QAU18410.1\|4323838_4324972_+\|transposase	IS110 family transposase	NA	NA	NA	NA
QAU18411.1\|4326622_4326970_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
QAU18412.1\|4326966_4327371_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
QAU18413.1\|4329499_4330456_-	thioesterase	NA	NA	NA	NA
QAU18414.1\|4330465_4331731_-	MFS transporter	NA	NA	NA	NA
QAU18415.1\|4332032_4333040_-	4-hydroxythreonine-4-phosphate dehydrogenase PdxA	NA	NA	NA	NA
QAU18416.1\|4333655_4335227_-\|transposase	IS66 family transposase	A0A0P0ZEB3	Stx2-converting_phage	4.9e-169	58.5

DBSCAN-SWA_12

4485827 : 4544498

Stx2-converting_phage(28.57%)

integrase,transposase

attL 4504460:4504473|attR 4545456:4545469

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU18556.1\|4485827_4486799_-\|transposase	IS481-like element ISEc18 family transposase	NA	NA	NA	NA
QAU18557.1\|4487175_4488390_+	DUF4338 domain-containing protein	NA	NA	NA	NA
QAU18558.1\|4488411_4490058_+	hypothetical protein	NA	NA	NA	NA
QAU18559.1\|4490069_4491953_+	hypothetical protein	NA	NA	NA	NA
QAU18560.1\|4491964_4493008_+	hypothetical protein	NA	NA	NA	NA
QAU18561.1\|4493004_4498515_+	DEAD/DEAH box helicase	A0A1B1IUF6	uncultured_Mediterranean_phage	2.3e-48	21.9
QAU18562.1\|4498764_4499874_+\|transposase	IS3 family transposase	A0A2I6AZV9	Macacine_betaherpesvirus	1.4e-05	24.8
QAU18563.1\|4499939_4500722_-	EAL domain-containing protein	NA	NA	NA	NA
QAU18564.1\|4500774_4501767_-	nuclease PIN	NA	NA	NA	NA
QAU18565.1\|4501789_4502308_-	fimbrial protein	NA	NA	NA	NA
QAU18566.1\|4502391_4502955_-	nuclease PIN	NA	NA	NA	NA
QAU18567.1\|4502991_4503723_-	molecular chaperone	NA	NA	NA	NA
QAU19238.1\|4503791_4506251_-	PapC/FimD family outer membrane usher protein	NA	NA	NA	NA
4504460:4504473	attL	NA	NA	NA	NA
QAU18568.1\|4506422_4507010_-	type 1 fimbrial protein	NA	NA	NA	NA
QAU18569.1\|4507095_4507602_-	type 1 fimbrial protein	NA	NA	NA	NA
QAU19239.1\|4507646_4507904_-	transcriptional regulator	NA	NA	NA	NA
QAU18570.1\|4509564_4510812_-	two-component system response regulator PgtA	NA	NA	NA	NA
QAU18571.1\|4510801_4512811_-	two-component system sensor histidine kinase PgtB	NA	NA	NA	NA
QAU19240.1\|4512807_4514025_-	phosphoglycerate transport regulator PgtC	NA	NA	NA	NA
QAU18572.1\|4514423_4515788_+	phosphoglycerate transporter PgtP	NA	NA	NA	NA
QAU18573.1\|4515830_4516196_+	hypothetical protein	NA	NA	NA	NA
QAU18574.1\|4516736_4517750_-	DUF4432 domain-containing protein	NA	NA	NA	NA
QAU18575.1\|4517761_4519078_-	L-fucose:H+ symporter permease	NA	NA	NA	NA
QAU18576.1\|4519105_4520026_-	ribokinase	NA	NA	NA	NA
QAU18577.1\|4520329_4521112_+	DeoR family transcriptional regulator	NA	NA	NA	NA
QAU18578.1\|4521113_4521212_-	acetolactate synthase	NA	NA	NA	NA
QAU19241.1\|4521339_4521540_-	hypothetical protein	NA	NA	NA	NA
QAU18579.1\|4521893_4522133_+	hypothetical protein	NA	NA	NA	NA
QAU18580.1\|4522259_4522454_-	hypothetical protein	NA	NA	NA	NA
QAU18581.1\|4522506_4522770_-	hypothetical protein	NA	NA	NA	NA
QAU18582.1\|4522841_4524114_+\|transposase	IS3 family transposase	Q9ZXG3	Shigella_phage	2.8e-170	95.7
QAU18583.1\|4524436_4524634_-	inovirus Gp2 family protein	NA	NA	NA	NA
QAU18584.1\|4524880_4525306_-	hypothetical protein	NA	NA	NA	NA
QAU18585.1\|4525302_4525686_-	hypothetical protein	NA	NA	NA	NA
QAU18586.1\|4526057_4526657_-	inovirus Gp2 family protein	NA	NA	NA	NA
QAU18587.1\|4526888_4527029_-	hemolysin activation protein	NA	NA	NA	NA
QAU19242.1\|4527115_4527238_-	hemolysin expression modulating protein	NA	NA	NA	NA
QAU19243.1\|4527324_4527516_-	hypothetical protein	NA	NA	NA	NA
QAU18588.1\|4528105_4528897_+	hypothetical protein	NA	NA	NA	NA
QAU19244.1\|4529111_4529309_+	hypothetical protein	NA	NA	NA	NA
QAU18589.1\|4529280_4529487_+	AlpA family transcriptional regulator	NA	NA	NA	NA
QAU18590.1\|4529580_4530183_+	hypothetical protein	NA	NA	NA	NA
QAU18591.1\|4530085_4530283_-	hypothetical protein	NA	NA	NA	NA
QAU18592.1\|4532149_4533325_+	hypothetical protein	NA	NA	NA	NA
QAU18593.1\|4533671_4534097_+	IS66 family insertion sequence hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
QAU18594.1\|4534093_4534444_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4
QAU18595.1\|4534474_4536088_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.3e-182	63.6
QAU18596.1\|4536675_4537611_-	hypothetical protein	NA	NA	NA	NA
QAU18597.1\|4537607_4539920_-	helix-turn-helix domain-containing protein	NA	NA	NA	NA
QAU18598.1\|4540224_4540827_-\|integrase	integrase	A0A1V0E036	Clostridioides_phage	1.8e-07	33.3
QAU19245.1\|4540973_4541189_+	resolvase	NA	NA	NA	NA
QAU19246.1\|4541225_4542326_+	hsdR	NA	NA	NA	NA
QAU18599.1\|4542561_4543245_-	hypothetical protein	NA	NA	NA	NA
QAU18600.1\|4543385_4544498_+\|transposase	IS4-like element IS421 family transposase	NA	NA	NA	NA
4545456:4545469	attR	NA	NA	NA	NA

DBSCAN-SWA_13

4650114 : 4695532

Burkholderia_phage(30.0%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU18693.1\|4650114_4651152_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
QAU18694.1\|4651513_4652518_-	DUF2713 family protein	NA	NA	NA	NA
QAU18695.1\|4652835_4653351_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
QAU18696.1\|4653392_4653602_-	CsbD family protein	NA	NA	NA	NA
QAU18697.1\|4653717_4655043_-	MATE family efflux transporter DinF	NA	NA	NA	NA
QAU18698.1\|4655115_4655724_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
QAU18699.1\|4655833_4656202_-	diacylglycerol kinase	NA	NA	NA	NA
QAU18700.1\|4656372_4658796_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
QAU18701.1\|4658950_4659823_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
QAU18702.1\|4659835_4660333_-	chorismate--pyruvate lyase	NA	NA	NA	NA
QAU18703.1\|4662363_4663284_-	maltose operon protein MalM	NA	NA	NA	NA
QAU18704.1\|4663526_4664867_-	maltoporin	NA	NA	NA	NA
QAU18705.1\|4664938_4666054_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	4.3e-18	31.7
QAU18706.1\|4666418_4667609_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
QAU18707.1\|4667762_4669307_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
QAU18708.1\|4669321_4670212_+	maltose ABC transporter permease	NA	NA	NA	NA
QAU18709.1\|4670305_4670716_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
QAU18710.1\|4670929_4671208_+	hypothetical protein	NA	NA	NA	NA
QAU18711.1\|4671254_4673351_-	YjbH domain-containing protein	NA	NA	NA	NA
QAU18712.1\|4673350_4674088_-	hypothetical protein	NA	NA	NA	NA
QAU18713.1\|4674084_4674723_-	YjbF family lipoprotein	NA	NA	NA	NA
QAU18714.1\|4674836_4675079_-	hypothetical protein	NA	NA	NA	NA
QAU18715.1\|4675433_4677083_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
QAU18716.1\|4677607_4678957_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
QAU18717.1\|4679011_4679359_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	2.2e-21	49.0
QAU18718.1\|4679896_4680184_+	hypothetical protein	Q6QIC8	Burkholderia_phage	3.9e-16	48.6
QAU18719.1\|4680186_4680792_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	3.3e-57	57.1
QAU18720.1\|4680804_4681119_+	hypothetical protein	Q5ZQY8	Pseudomonas_phage	9.2e-19	43.2
QAU18721.1\|4681263_4681719_+	hypothetical protein	NA	NA	NA	NA
QAU18722.1\|4681715_4681913_+	hypothetical protein	NA	NA	NA	NA
QAU18723.1\|4681902_4683327_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	7.0e-191	70.2
QAU18724.1\|4683326_4683851_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	9.5e-69	69.0
QAU18725.1\|4683901_4684219_+\|tail	phage tail assembly protein	NA	NA	NA	NA
QAU18726.1\|4684178_4684307_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
QAU18727.1\|4684408_4686784_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	1.0e-56	26.0
QAU18728.1\|4686783_4687737_+	chemotaxis protein	A4JWL1	Burkholderia_virus	3.3e-35	50.8
QAU18729.1\|4687736_4687946_+	hypothetical protein	A4JWL2	Burkholderia_virus	1.3e-16	60.3
QAU18730.1\|4687933_4688974_+	phage late control D family protein	A4JWL3	Burkholderia_virus	2.0e-73	45.1
QAU18731.1\|4688983_4689685_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	6.4e-12	36.3
QAU18732.1\|4689783_4690143_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	1.1e-34	64.2
QAU18733.1\|4690133_4691249_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	1.7e-99	51.4
QAU18734.1\|4691241_4691958_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	3.1e-22	37.2
QAU18735.1\|4691960_4693571_+	short-chain fatty acid transporter	A0A0M3ULH6	Salmonella_phage	3.8e-84	39.1
QAU18736.1\|4693567_4694275_+	DUF4376 domain-containing protein	A0A0E3JQ06	Enterobacteria_phage	5.3e-14	42.4
QAU18737.1\|4694271_4694727_+	hypothetical protein	F6MIM0	Haemophilus_phage	6.6e-26	42.7
QAU18738.1\|4694740_4695532_-	nucleotidyltransferase domain-containing protein	A0A2D1GQQ2	Pseudomonas_phage	2.0e-46	45.1

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP034390

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

61126 : 111583

Escherichia_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU19319.1\|61126_62740_+\|transposase	IS66-like element ISEc23 family transposase	A0A0P0ZEB3	Stx2-converting_phage	2.3e-182	63.6
QAU19320.1\|62746_63622_+	hypothetical protein	NA	NA	NA	NA
QAU19506.1\|63788_65288_-	kinase	NA	NA	NA	NA
QAU19321.1\|65313_66951_-	protein phosphatase 2C domain-containing protein	NA	NA	NA	NA
QAU19322.1\|66950_67991_-	VWA domain-containing protein	NA	NA	NA	NA
QAU19507.1\|68076_68715_-	VWA domain-containing protein	NA	NA	NA	NA
QAU19323.1\|68714_69356_-	tellurium resistance protein TerX	NA	NA	NA	NA
QAU19324.1\|69378_70017_-	VWA domain-containing protein	NA	NA	NA	NA
QAU19325.1\|70479_70947_-	tellurium resistance protein TerW	NA	NA	NA	NA
QAU19326.1\|70964_72173_-	DUF4236 domain-containing protein	NA	NA	NA	NA
QAU19327.1\|72183_73140_-	citrate lyase subunit beta	NA	NA	NA	NA
QAU19328.1\|73139_74219_-	hypothetical protein	A0A172Q0S8	Acinetobacter_phage	2.8e-38	34.1
QAU19329.1\|74220_74994_-	hypothetical protein	NA	NA	NA	NA
QAU19330.1\|74986_76129_-	adenine/guanine phosphoribosyltransferase	A0A172Q0Y1	Acinetobacter_phage	1.7e-30	35.4
QAU19331.1\|76138_77197_-	carbamoyl-phosphate synthase large chain	NA	NA	NA	NA
QAU19332.1\|77520_78102_+	tellurium resistance protein TerZ	K4JRX3	Caulobacter_phage	6.3e-13	30.0
QAU19333.1\|78101_79259_+	tellurium resistance protein TerA	NA	NA	NA	NA
QAU19334.1\|79281_79737_+	Tellurite resistance protein TerB	NA	NA	NA	NA
QAU19335.1\|79759_80800_+	tellurium resistance membrane protein TerC	K7QKE8	Escherichia_phage	2.2e-77	48.0
QAU19336.1\|80848_81427_+	TerD family protein	A0A2P1N0L4	Streptomyces_phage	3.3e-06	40.0
QAU19337.1\|81494_82070_+	TerD family protein	K4JRX3	Caulobacter_phage	8.7e-31	41.6
QAU19338.1\|82498_83740_+	tellurium resistance protein TerF	NA	NA	NA	NA
QAU19339.1\|84302_84584_-	hypothetical protein	NA	NA	NA	NA
QAU19340.1\|84633_84825_-	hypothetical protein	NA	NA	NA	NA
QAU19341.1\|84916_85288_-	hypothetical protein	NA	NA	NA	NA
QAU19342.1\|85630_86023_+	hypothetical protein	NA	NA	NA	NA
QAU19343.1\|86001_86313_+	hypothetical protein	NA	NA	NA	NA
QAU19508.1\|86626_86920_+	XRE family transcriptional regulator	NA	NA	NA	NA
QAU19344.1\|86924_88250_+	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
QAU19345.1\|88310_88517_+	hypothetical protein	NA	NA	NA	NA
QAU19346.1\|88618_89029_+	hypothetical protein	NA	NA	NA	NA
QAU19347.1\|89041_89857_+	HNH endonuclease	G0X580	Salmonella_phage	1.1e-15	36.5
QAU19348.1\|90110_90536_+	hypothetical protein	NA	NA	NA	NA
QAU19349.1\|91084_91393_+	hypothetical protein	NA	NA	NA	NA
QAU19350.1\|91408_92266_+	HNH endonuclease	G0X580	Salmonella_phage	3.9e-11	34.2
QAU19351.1\|92327_92531_+	hypothetical protein	NA	NA	NA	NA
QAU19352.1\|93219_93924_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAU19353.1\|94217_95033_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	4.8e-160	98.2
QAU19354.1\|95368_96205_-	APH(6)-I family aminoglycoside O-phosphotransferase	NA	NA	NA	NA
QAU19355.1\|96204_97008_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
QAU19356.1\|97482_98499_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
QAU19357.1\|98663_101729_-	tetrathionate reductase subunit TtrA	A0A077SK27	Escherichia_phage	3.6e-06	26.0
QAU19358.1\|101721_102744_-	tetrathionate reductase subunit TtrC	NA	NA	NA	NA
QAU19509.1\|102744_103497_-	tetrathionate reductase subunit TtrB	NA	NA	NA	NA
QAU19510.1\|103706_105440_+	sensor histidine kinase	NA	NA	NA	NA
QAU19359.1\|105414_105999_+	two-component system response regulator TtrR	NA	NA	NA	NA
QAU19360.1\|106091_106295_+	fumarate hydratase FumD	NA	NA	NA	NA
QAU19361.1\|106403_107420_-\|transposase	IS5-like element IS5 family transposase	Q38213	Escherichia_phage	9.8e-187	99.7
QAU19362.1\|107451_108195_-\|transposase	IS4 family transposase	A4KWT9	Enterobacteria_phage	8.6e-132	100.0
QAU19363.1\|109409_110270_+	aminoglycoside N-acetyltransferase AAC(3)-IId	NA	NA	NA	NA
QAU19364.1\|110282_110825_+	tunicamycin resistance protein	NA	NA	NA	NA
QAU19365.1\|110878_111583_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

DBSCAN-SWA_2

128799 : 160680

Escherichia_phage(46.15%)

integrase,transposase

attL 123124:123154|attR 163105:163135

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
123124:123154	attL	NA	NA	NA	NA
QAU19382.1\|128799_129504_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	6.9e-139	100.0
QAU19383.1\|132105_132411_-	LysR family transcriptional regulator	NA	NA	NA	NA
QAU19384.1\|132438_133653_-	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	5.5e-19	28.7
QAU19385.1\|133869_134754_-	DUF3363 domain-containing protein	NA	NA	NA	NA
QAU19386.1\|134784_135708_-\|transposase	IS91-like element ISVsa3 family transposase	NA	NA	NA	NA
QAU19387.1\|135831_136668_-	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
QAU19388.1\|136667_137471_-	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
QAU19389.1\|138611_139535_+\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	2.2e-177	100.0
QAU19390.1\|139696_140512_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
QAU19391.1\|140662_141367_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	9.0e-139	99.6
QAU19392.1\|142515_143307_+	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
QAU19393.1\|143476_143809_+	quaternary ammonium compound efflux SMR transporter QacL	NA	NA	NA	NA
QAU19394.1\|143948_144134_+	hypothetical protein	NA	NA	NA	NA
QAU19395.1\|144988_145780_-	sulfonamide-resistant dihydropteroate synthase Sul3	A0A0B5J4J5	Pandoravirus	7.0e-15	26.5
QAU19396.1\|146248_146494_-	hypothetical protein	NA	NA	NA	NA
QAU19397.1\|146531_147395_-	SDR family oxidoreductase	W8CYX9	Bacillus_phage	2.5e-05	31.0
QAU19398.1\|147540_147780_-	macrolide transporter	A0A2K5B2B5	Erysipelothrix_phage	9.5e-08	46.2
QAU19399.1\|147852_148557_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAU19400.1\|149145_149937_-	AadA family aminoglycoside 3''-O-nucleotidyltransferase	NA	NA	NA	NA
QAU19401.1\|149994_150603_-	HAD-IB family hydrolase	NA	NA	NA	NA
QAU19402.1\|150698_151541_-	alpha/beta fold putative hydrolase EstX	NA	NA	NA	NA
QAU19403.1\|153600_154305_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAU19404.1\|154426_155332_+	Mph(A) family macrolide 2'-phosphotransferase	NA	NA	NA	NA
QAU19405.1\|155328_156567_+	MFS transporter	NA	NA	NA	NA
QAU19406.1\|156566_157151_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QAU19407.1\|157096_157453_+	hypothetical protein	NA	NA	NA	NA
QAU19408.1\|157643_158408_-\|transposase	IS6-like element IS6100 family transposase	A0A077SL39	Escherichia_phage	4.3e-86	65.7
QAU19409.1\|158550_158817_-	plasmid mobilization relaxosome protein MobC	NA	NA	NA	NA
QAU19410.1\|159037_159511_-	trimethoprim-resistant dihydrofolate reductase DfrA14	G3MBI7	Bacillus_virus	8.4e-16	28.9
QAU19411.1\|159666_160680_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.5e-70	45.1
163105:163135	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP034389

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP034390

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection