CRISPRimmunity

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035311	Janthinobacterium sp. 17J80-10 chromosome, complete genome	1 crisprs	DEDDh,csa3,DinG,cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL	0	6	1	0

1. CP035311

CRISPR-Cas detection and classification

Crispr_ID: CP035311_1

• CRISPR_ID: CP035311_1
• CRISPR_location: 3013514-3015124
• CRISPR_type: TypeI
• Repeat_type: I-C,III-B
• Spacer_info: 22 spacers
• Cas_protein_info: cas2,cas1,cas4,cas7,cas8c,cas5,cas3,WYL

Consensus repeat of CP035311_1

Consensus_repeat	Method
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CRT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	PILER-CR
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CRISPRCasFinder

spacers of CP035311_1

>1.1|3013551|35|CP035311|CRT
GGCGGCCACAGCACGTCCTTGTCGATGCTGACGAA
>1.2|3013623|35|CP035311|CRT,PILER-CR,CRISPRCasFinder
CCCACGCTTGACGCTGATGGCAAGCCGATCTGGTG
>1.3|3013695|35|CP035311|CRT,PILER-CR,CRISPRCasFinder
GTTTGCTGCGGCGATGTAATCGAACGCCGGGGCTT
>1.4|3013767|35|CP035311|CRT,PILER-CR,CRISPRCasFinder
GTCGGCGCTCGTGCTGACAGGCTGGCAAAGATGAT
>1.5|3013839|35|CP035311|CRT,PILER-CR,CRISPRCasFinder
TTGACGTAGTGCCCCATTAGCGCAGCTCCCACCAT
>1.6|3013911|34|CP035311|CRT,PILER-CR,CRISPRCasFinder
CTGCGTGGGATACACACCCTGGTGGCATCAATAC
>1.7|3013982|35|CP035311|CRT,PILER-CR,CRISPRCasFinder
CTTCACCCTCGCCGAACTGATCCATTCGCAGACCG
>1.8|3014054|34|CP035311|CRT,PILER-CR,CRISPRCasFinder
GTGGCCCGATCCTCAATTCTGCCGTGGGCGGCTC
>1.9|3014125|36|CP035311|CRT,PILER-CR,CRISPRCasFinder
CCGCTGTTCGCCAAGGATCGCGACGCCCGCCAGCAC
>1.10|3014198|34|CP035311|CRT,PILER-CR,CRISPRCasFinder
CGCCGGGCACTACCTGTCCCGCGGCGCCAGGCCA
>1.11|3014269|35|CP035311|CRT,PILER-CR,CRISPRCasFinder
CTGCCAGGATAGTCGGGCATGATAGGCTCGCCGTT
>1.12|3014341|34|CP035311|CRT,PILER-CR,CRISPRCasFinder
TTTACCCCCGCCGCTTTGCGTAGTCGAAGAAGTC
>1.13|3014412|36|CP035311|CRT,PILER-CR,CRISPRCasFinder
ATTGCCAAGTTCAGCACCTGCTTGCTCGTCTATCTT
>1.14|3014485|36|CP035311|CRT,PILER-CR,CRISPRCasFinder
GCCAGCAAGGCATCGACCTGCGCCTGCGTCATTCCG
>1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder
GCCCTCCCCCGGCGTGCAGGGGAGGGATGGGGTTA
>1.16|3014630|34|CP035311|CRT,PILER-CR,CRISPRCasFinder
CCATTGGCAATATCGAATACTGGCATGGCCGCAG
>1.17|3014701|31|CP035311|CRT,PILER-CR,CRISPRCasFinder
AAAGCCAAAGCACTTGCAGACCGATTGACAG
>1.18|3014769|34|CP035311|CRT,PILER-CR,CRISPRCasFinder
AGTCGTCACCCGGGCGGCTGTTGAGGGCATCAAG
>1.19|3014840|35|CP035311|CRT,PILER-CR,CRISPRCasFinder
GGTATAGGCGCTCGCCAGCGGCTTCAGCTCATCGG
>1.20|3014912|33|CP035311|CRT,PILER-CR,CRISPRCasFinder
ATTGAGCCATTGCGGTGACTCGTGCAGCAGAAT
>1.21|3014982|34|CP035311|CRT,PILER-CR,CRISPRCasFinder
CGTGGAAGCTATTGGCAAAGCCTTTGGCTGGGAA
>1.22|3015053|35|CP035311|CRT,PILER-CR,CRISPRCasFinder
TTCGGTGAACCCTGGCTGCGCGCATGCGGCAGGGT

CRISPR arrays and Neighbor proteins around CP035311_1

CRISPR arrays

The CRISPR arrays of CP035311_1

>merge|CP035311|1|3013514-3015124|CRT,PILER-CR,CRISPRCasFinder
GAGCCCGTAATCGTCCGATCAATTGATCGGACGATGTGGCGGCCACAGCACGTCCTTGTCGATGCTGACGAAGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCCCCACGCTTGACGCTGATGGCAAGCCGATCTGGTGGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCGTTTGCTGCGGCGATGTAATCGAACGCCGGGGCTTGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCGTCGGCGCTCGTGCTGACAGGCTGGCAAAGATGATGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCTTGACGTAGTGCCCCATTAGCGCAGCTCCCACCATGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCCTGCGTGGGATACACACCCTGGTGGCATCAATACGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCCTTCACCCTCGCCGAACTGATCCATTCGCAGACCGGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCGTGGCCCGATCCTCAATTCTGCCGTGGGCGGCTCGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCCCGCTGTTCGCCAAGGATCGCGACGCCCGCCAGCACGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCCGCCGGGCACTACCTGTCCCGCGGCGCCAGGCCAGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCCTGCCAGGATAGTCGGGCATGATAGGCTCGCCGTTGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCTTTACCCCCGCCGCTTTGCGTAGTCGAAGAAGTCGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCATTGCCAAGTTCAGCACCTGCTTGCTCGTCTATCTTGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCGCCAGCAAGGCATCGACCTGCGCCTGCGTCATTCCGGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCGCCCTCCCCCGGCGTGCAGGGGAGGGATGGGGTTAGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCCCATTGGCAATATCGAATACTGGCATGGCCGCAGGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCAAAGCCAAAGCACTTGCAGACCGATTGACAGGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCAGTCGTCACCCGGGCGGCTGTTGAGGGCATCAAGGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCGGTATAGGCGCTCGCCAGCGGCTTCAGCTCATCGGGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCATTGAGCCATTGCGGTGACTCGTGCAGCAGAATGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCCGTGGAAGCTATTGGCAAAGCCTTTGGCTGGGAAGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGCTTCGGTGAACCCTGGCTGCGCGCATGCGGCAGGGTGTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC

>CP035311|1|1|3013514-3015124|CRT
GAGCCCGTAATCGTCCGATCAATTGATCGGACGATGT	GGCGGCCACAGCACGTCCTTGTCGATGCTGACGAA
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CCCACGCTTGACGCTGATGGCAAGCCGATCTGGTG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GTTTGCTGCGGCGATGTAATCGAACGCCGGGGCTT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GTCGGCGCTCGTGCTGACAGGCTGGCAAAGATGAT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	TTGACGTAGTGCCCCATTAGCGCAGCTCCCACCAT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CTGCGTGGGATACACACCCTGGTGGCATCAATAC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CTTCACCCTCGCCGAACTGATCCATTCGCAGACCG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GTGGCCCGATCCTCAATTCTGCCGTGGGCGGCTC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CCGCTGTTCGCCAAGGATCGCGACGCCCGCCAGCAC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CGCCGGGCACTACCTGTCCCGCGGCGCCAGGCCA
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CTGCCAGGATAGTCGGGCATGATAGGCTCGCCGTT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	TTTACCCCCGCCGCTTTGCGTAGTCGAAGAAGTC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	ATTGCCAAGTTCAGCACCTGCTTGCTCGTCTATCTT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GCCAGCAAGGCATCGACCTGCGCCTGCGTCATTCCG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GCCCTCCCCCGGCGTGCAGGGGAGGGATGGGGTTA
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CCATTGGCAATATCGAATACTGGCATGGCCGCAG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	AAAGCCAAAGCACTTGCAGACCGATTGACAG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	AGTCGTCACCCGGGCGGCTGTTGAGGGCATCAAG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GGTATAGGCGCTCGCCAGCGGCTTCAGCTCATCGG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	ATTGAGCCATTGCGGTGACTCGTGCAGCAGAAT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CGTGGAAGCTATTGGCAAAGCCTTTGGCTGGGAA
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	TTCGGTGAACCCTGGCTGCGCGCATGCGGCAGGGT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC

>CP035311|1|1|3013586-3015124|PILER-CR
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CCCACGCTTGACGCTGATGGCAAGCCGATCTGGTG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GTTTGCTGCGGCGATGTAATCGAACGCCGGGGCTT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GTCGGCGCTCGTGCTGACAGGCTGGCAAAGATGAT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	TTGACGTAGTGCCCCATTAGCGCAGCTCCCACCAT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CTGCGTGGGATACACACCCTGGTGGCATCAATAC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CTTCACCCTCGCCGAACTGATCCATTCGCAGACCG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GTGGCCCGATCCTCAATTCTGCCGTGGGCGGCTC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CCGCTGTTCGCCAAGGATCGCGACGCCCGCCAGCAC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CGCCGGGCACTACCTGTCCCGCGGCGCCAGGCCA
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CTGCCAGGATAGTCGGGCATGATAGGCTCGCCGTT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	TTTACCCCCGCCGCTTTGCGTAGTCGAAGAAGTC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	ATTGCCAAGTTCAGCACCTGCTTGCTCGTCTATCTT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GCCAGCAAGGCATCGACCTGCGCCTGCGTCATTCCG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GCCCTCCCCCGGCGTGCAGGGGAGGGATGGGGTTA
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CCATTGGCAATATCGAATACTGGCATGGCCGCAG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	AAAGCCAAAGCACTTGCAGACCGATTGACAG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	AGTCGTCACCCGGGCGGCTGTTGAGGGCATCAAG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GGTATAGGCGCTCGCCAGCGGCTTCAGCTCATCGG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	ATTGAGCCATTGCGGTGACTCGTGCAGCAGAAT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CGTGGAAGCTATTGGCAAAGCCTTTGGCTGGGAA
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	TTCGGTGAACCCTGGCTGCGCGCATGCGGCAGGGT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC

>CP035311|1|1|3013586-3015124|CRISPRCasFinder
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CCCACGCTTGACGCTGATGGCAAGCCGATCTGGTG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GTTTGCTGCGGCGATGTAATCGAACGCCGGGGCTT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GTCGGCGCTCGTGCTGACAGGCTGGCAAAGATGAT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	TTGACGTAGTGCCCCATTAGCGCAGCTCCCACCAT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CTGCGTGGGATACACACCCTGGTGGCATCAATAC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CTTCACCCTCGCCGAACTGATCCATTCGCAGACCG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GTGGCCCGATCCTCAATTCTGCCGTGGGCGGCTC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CCGCTGTTCGCCAAGGATCGCGACGCCCGCCAGCAC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CGCCGGGCACTACCTGTCCCGCGGCGCCAGGCCA
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CTGCCAGGATAGTCGGGCATGATAGGCTCGCCGTT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	TTTACCCCCGCCGCTTTGCGTAGTCGAAGAAGTC
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	ATTGCCAAGTTCAGCACCTGCTTGCTCGTCTATCTT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GCCAGCAAGGCATCGACCTGCGCCTGCGTCATTCCG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GCCCTCCCCCGGCGTGCAGGGGAGGGATGGGGTTA
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CCATTGGCAATATCGAATACTGGCATGGCCGCAG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	AAAGCCAAAGCACTTGCAGACCGATTGACAG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	AGTCGTCACCCGGGCGGCTGTTGAGGGCATCAAG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	GGTATAGGCGCTCGCCAGCGGCTTCAGCTCATCGG
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	ATTGAGCCATTGCGGTGACTCGTGCAGCAGAAT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	CGTGGAAGCTATTGGCAAAGCCTTTGGCTGGGAA
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC	TTCGGTGAACCCTGGCTGCGCGCATGCGGCAGGGT
GTTTCAATCCGCGCCCGATCAATCGACCGGGCGATGC

Neighbor Proteins Overview

Protein	Signature genes	Signature genes Name	Protein_function
CP035311.1|QAU35123.1|3024217_3025322_+|peptide-chain-release-factor-2	unknown	unknown	gnl|CDD|234799
CP035311.1|QAU35124.1|3025344_3026883_+|lysine--tRNA-ligase	unknown	unknown	gnl|CDD|234778
CP035311.1|QAU35109.1|3003366_3004632_-|lipoprotein-releasing-ABC-transporter-permease-subunit	unknown	unknown	gnl|CDD|274034
CP035311.1|QAU35110.1|3004768_3005827_+|hypothetical-protein	unknown	unknown	gnl|CDD|226706
CP035311.1|QAU35119.1|3017290_3018175_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	gnl|CDD|377458
CP035311.1|QAU36100.1|3002642_3003353_-|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	unknown	unknown	gnl|CDD|131266
CP035311.1|QAU35116.1|3011500_3011833_-|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter	unknown	unknown	gnl|CDD|137367
CP035311.1|QAU35118.1|3016635_3017262_-|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl|CDD|187768
CP035311.1|QAU35122.1|3022976_3023951_-|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	gnl|CDD|379100
CP035311.1|QAU35120.1|3018171_3019920_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	gnl|CDD|378245
CP035311.1|QAU35112.1|3007548_3008577_-|hypothetical-protein	unknown	unknown	gnl|CDD|227684
CP035311.1|QAU35111.1|3005823_3007521_+|single-stranded-DNA-specific-exonuclease-RecJ	unknown	unknown	gnl|CDD|182944
CP035311.1|QAU36102.1|3020593_3022840_-|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	gnl|CDD|350688
CP035311.1|QAU35117.1|3015300_3015591_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl|CDD|187856
CP035311.1|QAU35114.1|3009908_3010175_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	unknown	unknown	gnl|CDD|376852
CP035311.1|QAU36101.1|3015599_3016634_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	gnl|CDD|188360
CP035311.1|QAU35113.1|3009585_3009912_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl|CDD|226194
CP035311.1|QAU35115.1|3010336_3011464_+|Fic-family-protein	unknown	unknown	gnl|CDD|225718
CP035311.1|QAU35108.1|3001810_3002653_-|TatD-family-deoxyribonuclease	unknown	unknown	gnl|CDD|238635
CP035311.1|QAU35121.1|3019916_3020582_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	gnl|CDD|187534

HMMScan for Signature genes

Protein	Cas_name	Cas_description	E-value	Identity	Coverage
CP035311.1|QAU36102.1|3020593_3022840_-|CRISPR-associated-helicase-Cas3'	cas3	COG1203_cas3_CAS-I	1.9e-55	183.1	0.0
CP035311.1|QAU35119.1|3017290_3018175_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	cas7	cd09689_cas7_CAS-I-C	1.2e-123	406.5	0.0
CP035311.1|QAU36101.1|3015599_3016634_-|type-I-C-CRISPR-associated-endonuclease-Cas1	cas1	cd09721_cas1_CAS-I-C	1.5e-140	462.8	0.7
CP035311.1|QAU35118.1|3016635_3017262_-|CRISPR-associated-protein-Cas4	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	5.2e-34	112.7	0.0
CP035311.1|QAU35117.1|3015300_3015591_-|CRISPR-associated-endonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	3e-26	86.2	0.2
CP035311.1|QAU35120.1|3018171_3019920_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	cas8c	cd09642_cas8c_CAS-I-C	5.5e-166	548.2	0.0
CP035311.1|QAU35122.1|3022976_3023951_-|WYL-domain-containing-protein	WYL	COG2378_WYL_CAS-I:CAS-III	1.3e-46	154.2	0.6
CP035311.1|QAU35121.1|3019916_3020582_-|type-I-C-CRISPR-associated-protein-Cas5	cas5	cd09651_cas5_CAS-I-C	4.2e-82	269.5	0.0

rpsblast for functional proteins

Protein	Function_ID	Function_description	E-value
CP035311.1|QAU35123.1|3024217_3025322_+|peptide-chain-release-factor-2	gnl|CDD|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP035311.1|QAU35124.1|3025344_3026883_+|lysine--tRNA-ligase	gnl|CDD|234778	PRK00484, lysS, lysyl-tRNA synthetase; Reviewed.	0
CP035311.1|QAU35109.1|3003366_3004632_-|lipoprotein-releasing-ABC-transporter-permease-subunit	gnl|CDD|274034	TIGR02212, releasing_system_transmembrane_protein_lolC., lipoprotein releasing system, transmembrane protein, LolC/E family. This model describes the LolC protein, and its paralog LolE found in some species. These proteins are homologous to permease proteins of ABC transporters. In some species, two paralogs occur, designated LolC and LolE. In others, a single form is found and tends to be designated LolC. [Protein fate, Protein and peptide secretion and trafficking].	8.23313e-170
CP035311.1|QAU35110.1|3004768_3005827_+|hypothetical-protein	gnl|CDD|226706	COG4255, COG4255, Uncharacterized protein conserved in bacteria [Function unknown].	1.48512e-43
CP035311.1|QAU35119.1|3017290_3018175_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2	gnl|CDD|377458	pfam05107, Cas_Cas7, CRISPR-associated protein Cas7. CRISPR-associated protein Cas7 is one of the components of the type I-B cascade-like antiviral defense complex. In Haloferax volcanii, Cas5, Cas6 and Cas7 form a small complex that aids the stability of CRISPR-derived RNA.	1.7547e-158
CP035311.1|QAU36100.1|3002642_3003353_-|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD	gnl|CDD|131266	TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein. This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. [Protein fate, Protein and peptide secretion and trafficking].	1.26137e-113
CP035311.1|QAU35116.1|3011500_3011833_-|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter	gnl|CDD|137367	PRK09541, emrE, EmrE family multidrug efflux SMR transporter.	3.33588e-34
CP035311.1|QAU35118.1|3016635_3017262_-|CRISPR-associated-protein-Cas4	gnl|CDD|187768	cd09637, Cas4_I-A_I-B_I-C_I-D_II-B, CRISPR/Cas system-associated protein Cas4. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas4 is RecB-like nuclease with three-cysteine C-terminal cluster.	1.47545e-35
CP035311.1|QAU35122.1|3022976_3023951_-|WYL-domain-containing-protein	gnl|CDD|379100	pfam13280, WYL, WYL domain. WYL is a Sm-like SH3 beta-barrel fold containing domain. It is a member of the WYL-like superfamily, named for three conserved amino acids found in a subset of the superfamily. However, these residues are not strongly conserved throughout the family. Rather, the conservation pattern includes four basic residues and a position often occupied by a cysteine, which are predicted to line a ligand-binding groove typical of the Sm-like SH3 beta-barrels. A WYL domain protein (sll7009) is a negative regulator of the I-D CRISPR-Cas system in Synechocystis sp. It is predicted to be a ligand-sensing domain that could bind negatively charged ligands, such as nucleotides or nucleic acid fragments, to regulate CRISPR-Cas and other defense systems such as the abortive infection AbiG system.	1.7321e-38
CP035311.1|QAU35120.1|3018171_3019920_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1	gnl|CDD|378245	pfam09709, Cas_Csd1, CRISPR-associated protein (Cas_Csd1). CRISPR loci appear to be mobile elements with a wide host range. This entry represents proteins that tend to be found near CRISPR repeats. The species range, so far, is exclusively bacterial and mesophilic, although CRISPR loci are particularly common among the archaea and thermophilic bacteria. Clusters of short DNA repeats with nonhomologous spacers, which are found at regular intervals in the genomes of phylogenetically distinct prokaryotic species, comprise a family with recognisable features. This family is known as CRISPR (short for Clustered, Regularly Interspaced Short Palindromic Repeats). A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins.	0
CP035311.1|QAU35112.1|3007548_3008577_-|hypothetical-protein	gnl|CDD|227684	COG5397, COG5397, Uncharacterized conserved protein [Function unknown].	4.66828e-59
CP035311.1|QAU35111.1|3005823_3007521_+|single-stranded-DNA-specific-exonuclease-RecJ	gnl|CDD|182944	PRK11070, PRK11070, single-stranded-DNA-specific exonuclease RecJ.	0
CP035311.1|QAU36102.1|3020593_3022840_-|CRISPR-associated-helicase-Cas3'	gnl|CDD|350688	cd17930, DEXHc_cas3, DEXH/Q-box helicase domain of Cas3. CRISPR-associated (Cas) 3 is a nuclease-helicase responsible for degradation of dsDNA. The two enzymatic units of Cas3, a histidine-aspartate (HD) nuclease and a Superfamily 2 (SF2) helicase, may be expressed from separate genes as Cas3' (SF2 helicase) and Cas3'' (HD nuclease) or may be fused as a single HD-SF2 polypeptide. The nucleolytic activity of most Cas3 enzymes is transition metal ion-dependent. Cas3 is a member of the DEAD-like helicase superfamily, a diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.	2.11358e-55
CP035311.1|QAU35117.1|3015300_3015591_-|CRISPR-associated-endonuclease-Cas2	gnl|CDD|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.20956e-27
CP035311.1|QAU35114.1|3009908_3010175_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin	gnl|CDD|376852	pfam02604, PhdYeFM_antitox, Antitoxin Phd_YefM, type II toxin-antitoxin system. Members of this family act as antitoxins in type II toxin-antitoxin systems. When bound to their toxin partners, they can bind DNA via the N-terminus and repress the expression of operons containing genes encoding the toxin and the antitoxin. This domain complexes with Txe toxins containing pfam06769, Fic/DOC toxins containing pfam02661 and YafO toxins containing pfam13957.	8.6877e-13
CP035311.1|QAU36101.1|3015599_3016634_-|type-I-C-CRISPR-associated-endonuclease-Cas1	gnl|CDD|188360	TIGR03640, cas1_DVULG, CRISPR-associated endonuclease Cas1, subtype I-C/DVULG. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the DVULG subtype of CRISPR/Cas system.	3.45387e-175
CP035311.1|QAU35113.1|3009585_3009912_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl|CDD|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	9.04052e-06
CP035311.1|QAU35115.1|3010336_3011464_+|Fic-family-protein	gnl|CDD|225718	COG3177, COG3177, Fic family protein [Function unknown].	9.19159e-86
CP035311.1|QAU35108.1|3001810_3002653_-|TatD-family-deoxyribonuclease	gnl|CDD|238635	cd01310, TatD_DNAse, TatD like proteins; E.coli TatD is a cytoplasmic protein, shown to have magnesium dependent DNase activity.	2.61091e-76
CP035311.1|QAU35121.1|3019916_3020582_-|type-I-C-CRISPR-associated-protein-Cas5	gnl|CDD|187534	cd09752, Cas5_I-C, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex; in subtype I-C this protein might be the endoribonuclease that generates crRNAs; also known as DevS family.	3.99396e-98

Protein sequences

>CP035311.1|QAU35116.1|3011500_3011833_-|QacE-family-quaternary-ammonium-compound-efflux-SMR-transporter
MKNWLFLFAAIVAEVIATLALKASDGFTRPWPTVVLVAGYGAAFYLLSLTLRAIPVGIAYAIWSGVGIILISAVAWFWYGQKLDLPAIIGMALIVAGVIVLNVFSKTVGH
>CP035311.1|QAU35115.1|3010336_3011464_+|Fic-family-protein
MKSGDKLYIWQADDWPHWRYDLAALANPLAEVSRAQGLLLGRLTDVGLALRDQASLAVLTDDVVKTSAIEGEQLNVESVRSSIARRLGVDIGALAPVDRHVDGVVDMVLDATGQAQAPLTRERLFGWHAALFPTGYSGLAQIRTGAWRDDANGAMQVVSGPLHRQRIHYEAPPATRLEEELAGFLAWANATTPEPALIKAGLAHLWFVTLHPFDDGNGRIARAVGDLLLTRADGSPQRFYSLSAQIQRERRDYYDILERTQKGALDVTEWLAWFLGALHRAVDSAQDTLDAVLGKARFWQRWAGTPMNERQVKLLNRLLDGFEGKLTSSKWGAIAKCSADTALRDINELMALGVLRKAPGAGRSTAYELTELCQI
>CP035311.1|QAU35114.1|3009908_3010175_-|type-II-toxin-antitoxin-system-Phd/YefM-family-antitoxin
MTLATQIKPISYLKSNAADIVKEFATNPEPLIITQNGEAKMVVVEINQYERQQEQLALLRLIALGRKEYQAGNYTEAGAFFDELDKEE
>CP035311.1|QAU35113.1|3009585_3009912_-|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MSRKVLILDVAKPDFREIRTYVQSQFGETVWNDVNEEFKTAINDIGLHPAAGKEIEELKELGQENFRIRRVRQTRIIYEYDDKEVLVHMFIHARRDFRTHLMKRLFNV
>CP035311.1|QAU35112.1|3007548_3008577_-|hypothetical-protein
MKRLPDNIFGLYADLLQKVEGSKLAALHGGSYVSKRNRGSRYWYYQTRTLGGQVQRYLGKETEELLAQIEAARQSQDAFSAIMNERKRLVAMLIAGGATPEKGRPAKILEKMADAGVFSSGGVLIGSFGFACYGSMLGVRFDDALHRTEDMDFGFEREVQIAIQRNLKDDLVGADESFVTPRQINPWVVPNDMVTPDGFKVEFLTTKATPQDKAPVPIARFAIHAQPLDFLDYLIEDVQDAVVLSGAGIPVSVPNPARFALHKLAISQRRPVGHQAKAKKDLAQAGEIIEVLATDNPGALLLAHDAILKRQDQFGNVVMSGAVRLSVESKEALKSMLPQLLS
>CP035311.1|QAU35111.1|3005823_3007521_+|single-stranded-DNA-specific-exonuclease-RecJ
MTRIAIRPCNFRTSEMLRQSGVHPVLARLFAARGLTDARELTSELSSLLAPASLTHVEAAAVYLADAIGAGKKLVIVADYDCDGATACAVALRGLRMLGASVDYIVPNRFEYGYGLTPEIVELTVREKSPDVIVTVDNGIASIDGVAEANRRGIDVVVTDHHLPGDRLPDARVIVNPNQPHCGFPSKNLAGVGVMFYVLLALRAEMRKRGAFDAASQPRLDALLDLVALGTVADVVKLDANNRILVAQGLKRMRAGRMQPGIAALFRAAGREARRASPFDLGFGLGPRLNAAGRLADMSLGIECLTTDDEGRAWAIAHELDTINRDRREIESGMQDTAMALLDDFDPANRSTITVFDTTWHQGVIGIVASRLKDKFYRPTITFAPAGDGVSIKGSGRSIAGFHLRDALDLVSKRAPSLIEKFGGHAMAAGLTLRADNLDAFTHAFEDVGREWLNSSALERIVETDGALEDAYFTPQFVSLLDEQVWGQGFAAPVFCDTFRVVNQRVLKDKHLKLLLEKDGRRYDAIWFGHADGLPEQAVVAFRLDNNEYNGVTKVQLLVEHAQAA
>CP035311.1|QAU35110.1|3004768_3005827_+|hypothetical-protein
MSQLDILLPFGLPPPEFAKDLLQQCKTPAIALLLARAKTLQSENFDPFSRALPHETWLARQLLAGDALPESSPPLADALMRQHGLQADTGTWFVLQPVHFHIARDHLVLTDPRQLALDDAEARALFEAALPLFEEDGKTLVYGDAGTWFMQANDWHDLHTATPDAACGHNIDIWLPQGGQERAWRKLQNEVQMHWHMHEVNAEREARGARVVNSLWLWGGASVAQASQGALPAPYTDAFNLHGWSAALAASAASKRQDCGATEVITAAPQRGLLALDSLLPAAMAADWGTWLQEMQALEADWFAPLLSALQGGRLHRIRFILTNNTRLAEFSLGKGALRKFWVKPSLNRLLP
>CP035311.1|QAU35109.1|3003366_3004632_-|lipoprotein-releasing-ABC-transporter-permease-subunit
MSIIKNLPFEWLVGLRYTRAGRRSGRNSFISFISLISMAGIALGVAALIVVLSVMNGFQKEVRDRMLSVLSHIEVFDATGALPNWEETAREAFTNKAVKGAAPYVAGQAMITRDDTVRGVVVRGVLPQQEPKVSEVASQVRQGSFDALRAGEFNIVLGGELARSIGVGLGDRVTLIAPQGQVTPAGVIPRLKQFNVVGIFEAGHYEFDSSLAFIHIEDAQKMFKLPAPSGLRLKIADMQQAPQVAAELSTILTGNVLIRDWSRQNRNWFAAVQTEKRMMFIILTLIIAVAAFNLVSTLVMTVTDKQADIAILRTIGASPRSIMKIFMIQGAVVGLIGTAIGVGLGVLVALNVDVIVPFIERLLGVQFLPKDIYLISALPSDLRLSDVWTIGGVAVVLAFVATLYPSWWAARVKPAEALRYE
>CP035311.1|QAU36100.1|3002642_3003353_-|lipoprotein-releasing-ABC-transporter-ATP-binding-protein-LolD
MNANVNANVTGPVLSCRNLGKTFTQGKYAVEVFKHIDFAVSRGERVAIVGASGSGKSTLLHLLGGLDVPSTGSVSLQNKDMYSLNEAARGDLRNASLGFVYQFHHLLPEFSALDNVAMPLMIRRVKRAKAQQVAAGILERVGLANRVTHVPGELSGGERQRVALARALVTQPACVLADEPTGNLDRPTAQKTFDLMLELSNRLGTAFVIVTHDIELARHCDRILRLSENGLQPHVD
>CP035311.1|QAU35108.1|3001810_3002653_-|TatD-family-deoxyribonuclease
MWIDTHCHLDAGEFAGEAEEIAARAAQRGVDWIVIPAVARDNFDAVAQLAHRVPNGAYALGIHPIFVPQAAEDDLRLMRDAVAAAMSDARFVGIGEIGLDFFIPELKAGPMREKQEYFYSEQLKIARDFSLPVLLHVRRSVDIILKYLRRITVAGGFAHAYNGSFQQAEEFIRLGFRMGFGGAMTFTRALQLRRLAAQLPLDAIVLETDAPDIAPAWVHPGRNSPEELPRIGEVLASLRGIDTADLARAACANAMAVLPRLALLAQSPPAPSTTAAPHSA
>CP035311.1|QAU35117.1|3015300_3015591_-|CRISPR-associated-endonuclease-Cas2
MLIIVTYDVSTETAAGRKRLRRVAKTCERIGQRVQKSVFECTIDEMQFEQLERALLAEIDAATDNLRFYRITEPVDLRVKQYGCFRSVDFDGPLIA
>CP035311.1|QAU36101.1|3015599_3016634_-|type-I-C-CRISPR-associated-endonuclease-Cas1
MHTVQNTLYVMTPNAYAHLDNATLRIDVEHEKKLQVPLHHLGGLVCFGNIMVSPALMHRLADEGKSLVLLDNAGRFKARLEGAVSGNILLRQAHHRVVSDAVFSLEFARSVVAGKLKNSRTNLQRGAREAANAEEAATLTRSADNLAASLRATATATTLDQLRGVEGEAARGYFSALNLIVKAPLRSSFALNGRTRRPPLDRFNALISFLYAMSMNDCRSACEAAGLDVQLGIFHAIRPGRAALALDLQEEFRSIICDRLALTLINRVQITEADFDEREGGAVMLGDKGRRTVVTAWQERKQEEITHPLTENKVPIGLLPFIQARFIARTIRGEMDDYLPYLAK
>CP035311.1|QAU35118.1|3016635_3017262_-|CRISPR-associated-protein-Cas4
MTNSADEAVAISALQHWIYCPRQCGLIHLEQAFEENIHTVRGQAVHHLVDTPGYEIKAGVRVERALPVWSDCYNLIGKADLVEFHPDGRVYPVEFKHGAKRQKLHDDIQLAAQAICLEEMLDRPVPSGAIFHASSHRRREVLITPVLRQLVIATTDAIRAMLSSGRLPPPVNDARCKECSLKDICQPDAMAQRDRQRQQRLNLFNPEA
>CP035311.1|QAU35119.1|3017290_3018175_-|type-I-C-CRISPR-associated-protein-Cas7/Csd2
MSLTNRYDFVLLFDVKDGNPNGDPDAGNLPRLDAETGHGLVTDVCLKRKVRNFVGMARGEQPPYEIYVKEKAVLNNQHKRAYVGIGREDMLTGDDKKRKGGDAVDDARKWMCRNFFDVRTFGAVMSTGINCGQVRGPVQLTFARSIDPIIAQEHSITRMAVATEAEAEKQGGDNRTMGRKHTIPYGLYMAHGFVSSFLAKQTDFSEDDLELFWQALIQMFEHDRSAARGEMSTRGLYVFKHDLELGNAPAHSLFGRIRATRKEGVDVPRSFADYDVMVQDADLPAGVTLLNKSC
>CP035311.1|QAU35120.1|3018171_3019920_-|type-I-C-CRISPR-associated-protein-Cas8c/Csd1
MILQALSDYYLRCQRSPDPQDRLPAFGLEEKEIPFVIEIDAEGRLVNLADTRTLEVKKKIGQRFLVPQGAKKTSGVVANLLWDTAEYVLGVDTKGKPERVAEQHAAFRTRLAGLPPDALNDAGIQAILAFFSGFDLIQFEAFTVWPEILLTNPVMTFRLHGDMELVCQRPLIVAATAVTTDGVTPDGVCLVSGSAATIERLHPAIKGVWGAQTSGANIVSFNLDAFNSYGKVQGANAPLGKPAVFAYTTALNHLLARDSRQRIQVGDASTVFWAKEVHDLEAVLPDLFGEPPKDDPDRGTDALKVLYQSVQSGKFSHGAADTRFHVLGLSPNAARIAIRFWETAPANELAQRIARHFDDIKIARAPHDPEHLSLFRLLTSLAVQGKADNIPPNLGGEVMRAILQGLPYPAPLLNLAVQRTRAEQKPTYARAAAIKASLNRIIRRANLTAFASEKEFQAMLDQTNANPAYLLGRLFATLEKIQEEASPGLNATIRDRYYSAASSTPVAVFTTLLRLKNHHLGKLPKGRAVQMERLIGEIMGGLDGFPRILALPDQGRFALGYYHQRQSFFTKAESTNNQEESK
>CP035311.1|QAU35121.1|3019916_3020582_-|type-I-C-CRISPR-associated-protein-Cas5
MKRYCLELSGDFACFTRPEMKVERVSYDVMTPSAARACFEAILWKPAIRWHIHQIEVLKPIHWINLRRNEVASVVSTRNVETVMKGGAAILGLNIEDERQQRAGLFLRDVAYRVHADLEFFPERDAGAHANKYYEMFERRASRGQCVNQPYLGCREFAAHFRLVTDIAAEPMPITETRELGFMLHDLDFTKPSDPTPRFFRARLENGAINVPAWNSEEVRG
>CP035311.1|QAU36102.1|3020593_3022840_-|CRISPR-associated-helicase-Cas3'
MSGSQPIAHAAKDKNDVWREPHGLDEHLREVARLASLSASRFNSSDWAHLAGLWHDLGKYRPRFQHYIRQASGFEVDAHINGEAGKAPHSTAGALLACDRFDVAGRVLAYLIAGHHAGLYDWFGGLDDRLGKADSRDEFNEALAQQPPADILDHGAFVPDLRDIPGGKDGFALWVRMLFSCLIDADRLDTEAYMDADKSAQRVGWPNIQNLLEQFDRFMTSKTLTADATAVNLLRADILRQCREKAYDAPGLFSLTVPTGGGKTLSSLAFALEHAKRFEKRRIIYVIPYTSIIEQTADIFRSIFGDAVIEHHSNADADPEKENHKSHLACENWDAPVVVTTNVQFFESLFAAKTSRCRKLHNIVDSVVVLDEAQLLPPEFLQPILDVLNLLTIHYGVTVVLSTATQPALSTREYFDARNNMRGLDNVREIMSDPDVLYRALERVKVRLPADWNTPMSWDVLAEEINQRGSVLAIVNRRKDARELWQRMPEGTLHLSALMCGEHRSQIIQKIKAQLKDGILTRVVSTQLVEAGVDVDFPVVYRALAGLDSLAQAAGRCNREGKLAQGEVVVFIPPQLSPQGQLRKAEDACRSVLYGHIGKPLERVLFSSYFEKLYHACDLDAQGIVKLLEVDGQTLAINFRTAAEKFKLIQDEDSAPVIVRYRGAEGNDEAIEKWLNALRKDGPDRWLMRKLQRYTVTVPRRDAMRLLAQGDVEEIIPGLFVQKNDFLYHDQLGLIIEGVLPSAQAFIA
>CP035311.1|QAU35122.1|3022976_3023951_-|WYL-domain-containing-protein
MDRTERLYRIQTLLSQYRVVPRTKFLEVLGISLATFKRDLAYLRDRMDVPIEYDTEAGGYRLKATVRGGRHELPGMWFNADEIHALLSMQQLLQELQPGLLTPHIQPLLDRLYRLLDSPDVPRKEVQRRIRVLRANAHQINPASFGLASTAVLNRRQITIQYFHRGRNATESRTLSPQRLTYYRDNWYLDAWCHLREDIRSFSLDAIRGIELLDDAALNIPDADLDAVFTAGYGIFSGAELQWAVLRFSPERARWVSRESWHPQQESFFEEDGHYVLRVPYSDDRELLMDILRHVPEVVVLGPSGLQVKVAAQLEKGVVSIKNM
>CP035311.1|QAU35123.1|3024217_3025322_+|peptide-chain-release-factor-2
MEAERLNALSALLADLTIREVELRGYLDFAAKSEKLEQVNAELEDPNVWNDQKRAQDLGREKKSLEAIVTSLTEIESGLRDATDLFEMAREEGDEDTVVAIEADAEELRKRVEGMEFRRMFNNPMDANNCFIDITAGAGGTEAQDWASMIMRQYLRYCERKGFKTEILEQSDGEIAGIKTAAIKVEGDYAYGFLRTETGVHRLVRKSPFDSANGRHTSFCSLFVYPEVDDSIEIDINPADVRVDTYRASGAGGQHINKTDSAVRLTHGPSGIVVQCQNDRSQHRNRAEAWDMLKSKLYELELRNRMSEQQKLEDSKTDVGWGHQIRSYVLDQSRIKDLRTGHEVGNTKAVLDGDLDDFIGASLKQGV
>CP035311.1|QAU35124.1|3025344_3026883_+|lysine--tRNA-ligase
MTQHTAPASDNAAQPLDEGSIIGERRAKLAAIREKGVAFPNDFRPANKAADLQAQHGDAAAEALEEQAIKVSVAGRMMLKRVMGKASFATLQDASGPKADGRIQLFITKDLLGEEAYDLFKHYDLGDILGAEGTLFKTKTGELSVKVTTLRLLTKSLRPLPDKFHGLADQETKYRQRYVDLIMSEETRRTFKARTAALSSIRRFMEKNDFMEVETPMLHVIPGGAAAKPFITHHNALDMQMFMRIAPELYLKRLVVGGFERVFEVNRNFRNEGVSPRHNPEFTMMEFYAAYVDYQWLMEFTEQVIRQAAVDAHGTASLTYQGRELDLSKPFERLTIVGAINKYAPQYTGEQLHDEAFLRHELRRLGVKPHAHAGLGALQLALFEETAEAQLWNPTYIIDYPVEVSPLARASDTVPGITERFELFITGREIANGFSELNDAEDQAARFQAQVAAKEAGDDEAMYYDADYIRALEYGLPPTGGCGIGIDRLMMLITDSPNIRDVILFPHLRRED

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035311_1	1.1|3013551|35|CP035311|CRT	3013551-3013585	35	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	308638-308672	5	0.857
CP035311_1	1.1|3013551|35|CP035311|CRT	3013551-3013585	35	NZ_CP032322	Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence	1585661-1585695	5	0.857
CP035311_1	1.1|3013551|35|CP035311|CRT	3013551-3013585	35	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	474342-474376	5	0.857
CP035311_1	1.1|3013551|35|CP035311|CRT	3013551-3013585	35	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	77366-77400	5	0.857
CP035311_1	1.1|3013551|35|CP035311|CRT	3013551-3013585	35	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	1208208-1208242	6	0.829
CP035311_1	1.1|3013551|35|CP035311|CRT	3013551-3013585	35	NZ_CP018229	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence	557287-557321	7	0.8
CP035311_1	1.14|3014485|36|CP035311|CRT,PILER-CR,CRISPRCasFinder	3014485-3014520	36	NC_017793	Deinococcus gobiensis I-0 plasmid P6, complete sequence	762-797	7	0.806
CP035311_1	1.17|3014701|31|CP035311|CRT,PILER-CR,CRISPRCasFinder	3014701-3014731	31	NC_012987	Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence	43250-43280	7	0.774
CP035311_1	1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder	3014558-3014592	35	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	419376-419410	9	0.743
CP035311_1	1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder	3014558-3014592	35	NZ_CP012915	Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence	1138268-1138302	9	0.743
CP035311_1	1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder	3014558-3014592	35	NZ_CP032340	Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence	994104-994138	9	0.743
CP035311_1	1.17|3014701|31|CP035311|CRT,PILER-CR,CRISPRCasFinder	3014701-3014731	31	NZ_CP017941	Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence	558638-558668	9	0.71
CP035311_1	1.3|3013695|35|CP035311|CRT,PILER-CR,CRISPRCasFinder	3013695-3013729	35	MT708549	Burkholderia phage Maja, complete genome	36351-36385	10	0.714
CP035311_1	1.6|3013911|34|CP035311|CRT,PILER-CR,CRISPRCasFinder	3013911-3013944	34	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	602062-602095	10	0.706
CP035311_1	1.6|3013911|34|CP035311|CRT,PILER-CR,CRISPRCasFinder	3013911-3013944	34	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1211469-1211502	10	0.706
CP035311_1	1.14|3014485|36|CP035311|CRT,PILER-CR,CRISPRCasFinder	3014485-3014520	36	NC_021077	Comamonas sp. 7D-2 plasmid pBHB, complete sequence	51874-51909	10	0.722
CP035311_1	1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder	3014558-3014592	35	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	571185-571219	10	0.714
CP035311_1	1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder	3014558-3014592	35	NZ_CP022363	Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence	741577-741611	10	0.714
CP035311_1	1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder	3014558-3014592	35	NZ_CP032349	Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence	531370-531404	10	0.714
CP035311_1	1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder	3014558-3014592	35	NZ_CP032347	Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence	630006-630040	11	0.686

1. spacer 1.1|3013551|35|CP035311|CRT matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.857

--ggcggccacagcacgtccttgtcgatgctgacgaa	CRISPR spacer
ttggcggc--cagcacgtccttgtcgaagcggacgag	Protospacer
  ******  ***************** ** *****.

2. spacer 1.1|3013551|35|CP035311|CRT matches to NZ_CP032322 (Azospirillum brasilense strain MTCC4035 plasmid p1, complete sequence) position: , mismatch: 5, identity: 0.857

--ggcggccacagcacgtccttgtcgatgctgacgaa	CRISPR spacer
ttggcggc--cagcacgtccttgtcgaagcggacgag	Protospacer
  ******  ***************** ** *****.

3. spacer 1.1|3013551|35|CP035311|CRT matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 5, identity: 0.857

--ggcggccacagcacgtccttgtcgatgctgacgaa	CRISPR spacer
ttggcggc--cagcacgtccttgtcgaagcggacgag	Protospacer
  ******  ***************** ** *****.

4. spacer 1.1|3013551|35|CP035311|CRT matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 5, identity: 0.857

--ggcggccacagcacgtccttgtcgatgctgacgaa	CRISPR spacer
ttggcggc--cagcacgtccttgtcgaagcggacgag	Protospacer
  ******  ***************** ** *****.

5. spacer 1.1|3013551|35|CP035311|CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 6, identity: 0.829

--ggcggccacagcacgtccttgtcgatgctgacgaa	CRISPR spacer
ttggcgtc--cagcacgtccttgtcgaagcggacgag	Protospacer
  **** *  ***************** ** *****.

6. spacer 1.1|3013551|35|CP035311|CRT matches to NZ_CP018229 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed1, complete sequence) position: , mismatch: 7, identity: 0.8

--ggcggccacagcacgtccttgtcgatgctgacgaa	CRISPR spacer
gcgtcgg--acagaacgtccttgtcgatggtgacata	Protospacer
  * ***  **** *************** ****. *

7. spacer 1.14|3014485|36|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NC_017793 (Deinococcus gobiensis I-0 plasmid P6, complete sequence) position: , mismatch: 7, identity: 0.806

gccagcaaggcatcgacctgcgcctgcgtcattccg	CRISPR spacer
gccatcaaggcatcgacctgcgcctgcaccgccctg	Protospacer
**** **********************..*...*.*

8. spacer 1.17|3014701|31|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NC_012987 (Methylorubrum extorquens AM1 plasmid p1METDI, complete sequence) position: , mismatch: 7, identity: 0.774

aaagccaaagcacttgcagaccgattgacag	CRISPR spacer
atagccaaagcattggcagaccgatttgaat	Protospacer
* **********.* *********** . * 

9. spacer 1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.743

gccctcccccggcgtgcaggggaggg------atggggtta	CRISPR spacer
gccctcccccgctgtgcaggggagggtgccttacg------	Protospacer
*********** .*************      *.*      

10. spacer 1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP012915 (Azospirillum brasilense strain Sp 7 plasmid ABSP7_p1, complete sequence) position: , mismatch: 9, identity: 0.743

gccctcccccggcgtgcaggggaggg------atggggtta	CRISPR spacer
gccctcccccgctgtgcaggggagggtgccttacg------	Protospacer
*********** .*************      *.*      

11. spacer 1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032340 (Azospirillum brasilense strain MTCC4038 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.743

gccctcccccggcgtgcaggggaggg------atggggtta	CRISPR spacer
gccctcccccgctgtgcaggggagggtgccttacg------	Protospacer
*********** .*************      *.*      

12. spacer 1.17|3014701|31|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP017941 (Phyllobacterium zundukense strain Tri-48 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.71

aaagccaaagcacttgcagaccgattgacag	CRISPR spacer
ctcgccaaaccacttgcagaccaattcagtc	Protospacer
   ****** ************.*** *   

13. spacer 1.3|3013695|35|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to MT708549 (Burkholderia phage Maja, complete genome) position: , mismatch: 10, identity: 0.714

gtttgctgcggcgatgtaatcgaacgccggggctt----	CRISPR spacer
tgccgctgcggcgatgccatcgaacgccg----ttcgca	Protospacer
  ..************. ***********    **    

14. spacer 1.6|3013911|34|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.706

ctgcgtgggatacacaccctggtggcatcaatac	CRISPR spacer
ctgcgggggatacccaccctggtgctcgaacggc	Protospacer
***** ******* ********** .   *  .*

15. spacer 1.6|3013911|34|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.706

ctgcgtgggatacacaccctggtggcatcaatac	CRISPR spacer
ctgcgggggatacccaccctggtgctcgaacggc	Protospacer
***** ******* ********** .   *  .*

16. spacer 1.14|3014485|36|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NC_021077 (Comamonas sp. 7D-2 plasmid pBHB, complete sequence) position: , mismatch: 10, identity: 0.722

gccagcaaggcatcgacctgcgcctgcgtcattccg	CRISPR spacer
acgaccaatgcatcgaactgcgcctgcgtcaacgac	Protospacer
.* * *** ******* ************** .   

17. spacer 1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 10, identity: 0.714

gccctcccccggcgtgcaggggagggatggggtta	CRISPR spacer
tccctcccccgccgggcaggggagggagctttctc	Protospacer
 ********** ** ************     .* 

18. spacer 1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP022363 (Azospirillum sp. TSH58 plasmid TSH58_p03, complete sequence) position: , mismatch: 10, identity: 0.714

gccctcccccggcgtgcaggggagggatggggtta	CRISPR spacer
accctcccccgccgcgcaggggagggcttttctcc	Protospacer
.********** **.*********** *    *. 

19. spacer 1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032349 (Azospirillum brasilense strain MTCC4039 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.714

gccctcccccggcgtgcaggggagggatggggtta	CRISPR spacer
cccctcccccggcgtgcggaggaggggaaaggccg	Protospacer
 ****************.*.******. ..**...

20. spacer 1.15|3014558|35|CP035311|CRT,PILER-CR,CRISPRCasFinder matches to NZ_CP032347 (Azospirillum brasilense strain MTCC4039 plasmid p2, complete sequence) position: , mismatch: 11, identity: 0.686

gccctcccccggcgtgcaggggagggatggggtta	CRISPR spacer
accctcccccgctgtgcaggggaggggaccattct	Protospacer
.********** .*************.   . *. 

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site
DBSCAN-SWA_1	3251224 : 3258659	7	Methanothermobacter_phage(16.67%)	protease	NA

Sequences of DBSCAN-SWA_1

Nucleotide sequences of DBSCAN-SWA_1

>CP035311|3251224:3258659|DBSCAN-SWA
CATGGAACTGGCTGGAAAAAAAATCATTCTGGGCCTCTCCGGCGGCATCGCTTGCTACAAGGCCGCCGAACTGGCGCGCCTTCTGGGCAAGGCAGGCGCCTCGGTGCAGGTGGCGATGACCGACGCAGCCACCCATTTCATGACTACCGTGACAATGCAGGCGCTGACGGGCAAGCCGGTATTTACCGACCAGTGGGACGGACGCATCGCCAACAACATGGCGCATATCGACCTGTCGCGCGAGGCGGACGCCATCCTGATCGCCCCCTGCTCCGCCGATTTCATGTTCAAGCTGGCGCACGGCGCCTGCGACGACCTGCTTTCCACCCTGTGCCTGGCGCGACCGGCTGGCTTGCCGCTCTTGGTGGCGCCGGCAATGAATGTCGAGATGTGGCAAAACCCGGCGACGCAGCGCAATGCGGCACGCCTGAAGGAAGACGGCATCCGGATCATGGGGCCGGGCGCGGGCGAGCAGGCCTGCGGCGAAACGGGCCTTGGCCGCATGCTCGAACCGGAGCAACTCCTGGAAGAAGTGATTGCCTCCTTCCAGCCCAAAGTCCTGTCCGGCAAACGCATCCTGCTGACAGCCGGCCCCACCTTTGAGCCGATCGACCCGGTACGCGGCATCACCAACCTCTCATCAGGCAAGATGGGGTTTGCCATTGCCCGCGCTGCCCGCGAAGCAGGCGCGCAAGTTACGCTGGTGACAGGGCCCACCGGCCTGCAGACGCCCTATGGCGTCACCCGCATCGATGTGCAAACTGCACAGCAGATGCAGGACGCAGTGCTGAAGCAGGTCAGCGGCCAGGATGTCTTCATTGCCGTGGCTGCGGTGGCTGACTGGCGCGTGGTCGGCGCCAGTGAACAGAAACTGAAAAAGGACGCGGCGGGCACCCCGCCGCAATTGCAGCTGGCTCCCAACCCGGATATCCTGGCTGCCGTGGCAGCGCTGCCGCAGCGCCCCTATTGCGTCGGTTTTGCCGCCGAGTCCGAGAATCTCGCGCAGTATGGCGAAGAAAAACGCCGCCGCAAGAATGTGCCTCTTTTGGTCGGCAACATCGGCCACCAGACTTTCGGCCGCGACGACAATGAACTGACGCTGTTCGAGGACAGCGGGCAAACCACGCTGCCGCGTGCGGACAAGCAGGCGCTGGCGCGCCAGCTGGTTGTCGCTATTGCGCGGCGCATCTGATTTCCTGCACCGGCCGCCGCATTGCCCGCGAGGCGATGCGGCAGCCACATTCTTTTTCCATCACAGCCCTATTTCCATGAAATCCATCGACGTCAAAATCCTCGACCCGCGCATGAAAGACCAGCTCCCGGCCTATGCTACCGGCGGCAGCGCGGGGCTTGACCTGCGCGCCTGCCTTGAGGCGCCACTGACCCTCCGGCCGGGCGAAACCCATCTGGTGCCCACCGGCCTTGCCATCCATATTAGCGACCCCGCCTATGCGGCAATGATCCTGCCGCGCAGCGGCCTGGGCCACAAGCATGGCATCGTGCTTGGGAACCTGGTCGGCCTGATCGACTCCGATTACCAGGGCCAGCTGATGGTATCGACCTGGAACCGCGGCCAGACGGAATTTGTCCTCAACCCCATGGAGCGGCTGGCGCAACTGGTGATCGTACCGGTGCTGCAGGTCGGCTTTAATGTGGTTGAAGAATTCGACAGCAGTGAACGCGGCGCCGGCGGTTTCGGCAGCACTGGCAAACATTGAAAGGACCACTCATGACCGAGCGCTTTACCCGCACCTCAAACCGCAAGCAGATGACCTGCCGTCTTGCCTCCCTGTTGCTGCCGGCAGCCCTTCTGACGGCCTGCGCCGTCCCGCCGCAGCAACCGGCCCAGCCGACCCCGGTCATCGCCAGCGTGCCAGCGGTGCCCGGTTCGGCGCAACAGCAAGCACTGCGGGCGATGGCAGAAGCGCAAAGCCGCATCGACCGCGTCACCGGCCCGCTGCTGGTGAATAACGCCCCCTTGTGCAAGTCGCACGCCTACAAGCTGCTCGGTTTTTCCGCCAAAAACAGGTATTCCTACTCGGCCGAACTGGCCGATACCGTGCAGCAGACCTTTGGCTACGGCGAGCGCCTGCAAGTCACCAACGTGCTTGCCGGCAGCGGCGCCGAACGCGTCGGCGTACTGCGCGGCGACATCCTGATCGCTGCCGAAAACAAGGAAATCCCGCCCGGCGAAAACGCCGAGCGCCAGGCTGCCACCGTGCTCGGACCGCTGGTGCGCGGACGCGCGCTGGTCAAGTTGACGGTGGAACGCAAGGGCGCGCCGATGTCGCTGGTGGTGCCGCTGACGCAATCCTGCGGATTCAGTGTCGACCTTGGCAACGCCGACCATGTCAATGCGTATGCTGACGGCCGCCGCGTCGTCATCACCCGCGGCATGCTGAACTTTGCACGATCCGAACAGGAACTGGCGTACGTGATCGCACGCGAAATGGCCCACAACATCCTCGGTCACGCCGGCAACCAGCGCATGGGCGCAACCCTGGGCGGCATCATCGACAACCTGATCCGCGTCACACCGGATCTGGATACCATGACTGGCCGCTCGGGTGTCATCCCCTATCCAGCCGCGCTGGACGCCGATGCCGACCGGCTCGGACTCTACCTGGCAGCCCGTGCGGGCTACAACGTCGATGCGGCAGCAGCGTTCTGGCAAAGGCTGGCCGAGCGCTACCCTGCTTCAGTCGCCAATGGCTATACGGCGATCCATCCGGATAACAGCGCCCGCCTGGCAGCGCTGGAAAAGGCCGCCGCCGAAATCCGCGCAAAACAGACAACCAAACGCCCCCTGCTACCCTAACTTCAGCCCCGCCAGAGGGGCAATAAAACAAAAGCCCGGCGCATTTGCATGCGCCGGGCTTTTTTCTTGCCGCTGCCTTATTCGATCTCGGCAGCTTCCAGCGGTGCGGCTGGCGGCGCAATGTCGCCTTCGATAAACTCCAGCTTGACCTGATCCTTCTCGTCCAGATCCACCGTCACGCGTCCGCCGGAGACCAGGCGGCCAAACAGCAATTCGTCGGCCAGGGCCTTGCGGATCATGTCCTGGATCAGGCGCGACATCGGGCGCGCTCCCATGAGCGGATCGAATCCCTTCTTTGCCAGGAAGCGGCGCAGCTTCTCGGAGAAGACGGCATCGACTTTTTTCTCGTGCAGCTGCTCTTCGAGTTGCATGAGGAACTTGTCCACCACGCGCAGGATGATTTCCTCGTCGAGCGCCTTGAAGCTGATGACGGCATCGAGGCGGTTGCGGAACTCCGGCGTAAACATGCGCTTGATGTCGGCCATTTCGTCACCCGCCTCGCGCTGCTCGGTGAACCCGATGGTGCGCCTTTGCAGGCTTTCGGCACCCGCATTGGTGGTCATGATGATGATGACATTGCGGAAGTCCGCCTTGCGCCCGTTGTTATCGGTCAGCGTGCCGTGATCCATCACCTGCAGCAGGATATTGAAAATATCCGGATGCGCCTTTTCGATCTCGTCGAGCAGCAGCACCGCATGCGGCTTCTTGGTGATCGCCTCGGTCAGCAAGCCGCCCTGGTCGAAACCGACGTAGCCAGGCGGCGCGCCGATCATGCGGCTGACTGCGTGGCGCTCCATGTACTCCGACATATCGAAGCGGATCAGATCAATGCCGAGGATGAAGGCCAGCTGCTTGGCGACCTCGGTCTTGCCGACGCCCGTGGGGCCGGAGAAGAGGAAGGAGCCGATCGGCTTGTCTGTCTTGCCCAGGCCCGCGCGTGCCATCTTGATGGCCGACGCCAGTGCCTCAATGGCCGGATCCTGGCCGAACACGACGTTTTTCAGGTCGCGGTCGATGGTCTGCAGCTTGCTGCGATCATCCTGGTTGACGGTCTGCGGCGGAATGCGCGCGATCTTGGCGATGATGTCCTCGATCTCGGCCTTGCCGATGGTTTTTTTCTGCTTGGACTTGGGCAGGATGCGTTGTGCAGCACCAGCCTCGTCGATAACGTCGATGGCCTTGTCGGGCAAGTGACGGTCGTTGATGAAGCGTGCTGCCAGTTCGGCCGCCGTGGTCAGTGCCGATGCCGAATACTTGATGCCGTGGTGTTCCTCGAAACGCGACTTCAGCCCGCGCAGGATCTGCACTGTCTGCTCGACTGTCGGCTCGTTGACATCAATCTTCTGGAAACGACGCGACAGGGCATGGTCCTTCTCGAAGACGCCGCGGTATTCGGTGAAGGTGGTTGCGCCGATGCATTTAAGCTGGCCGCTCGACAATGCCGGCTTCAGCAGGTTGGACGCATCCAGGGTACCGCCCGAGGCAGCGCCGGCGCCGATGATGGTATGGATCTCGTCGATGAACAGGATGCCGTTCGGATTATCCTTCAGCTGTTTCAGCACGGCCTTCAGGCGCTGCTCGAAATCGCCGCGGTACTTGGTGCCGGCCAGCAGCGCGCCCATGTCGAGCGAATACACGACCGCATTCTGCAGCACTTCCGGCACGTCGCCTTGCGTGACGCGCCAGGCCAGGCCCTCGGCGATGGCAGTCTTGCCCACGCCAGCTTCACCAACAAGCAGCGGATTGTTCTTGCGGCGGCGGCACAGGGTCTGGATCACGCGCTCGACCTCGGCTTCGCGGCCGATCAGCGGATCGATCTTGCCCTCGGCAGCGGCCTTGTTGAGGTTCTGGGTGAACTGCTCCAGCGGGCTTTCCTTGGCCTGTCCTTCGACCTGCGCATCTTCCGCACCCTCCGGCGACTTTTGCGGATCGCTTTGCTGATCCTTGCGCACCCCGTGGGAAATGAAATTCACCACGTCCAGGCGCGTCACGCCCTGCTGGTGCAGGTAGTACACCGCGTGCGAATCCTTCTCGCCGAAGATGGCCACCAGCACGTTCGCGCCGGTGACTTCCTTCTTGCCGTTGGATGCCGATTGCACGTGCATGATGGCACGCTGGATCACGCGCTGGAAACCCAGGGTCGGCTGGGTATCGACCTCGCTCGTACCGGGCACGGTCGGCGTATTGTCGCTAATAAAATTGGTGAGCGTCTTGCGCAGATCTTCGATGTTGACAGCGCAGGCGCGCAATACTTCCGCAGCCGACGGGTTGTCCAGCAACGCGAGCAGCAAATGCTCGACAGTGATGAACTCGTGTCGCGCTTGTCGCGCCTCAACGAAGGCCATATGCAAACTAACTTCAAGTTCTTGCGCAATCATGCTTCCTCCATCACGCACTGCAAGGGATGTCCTGCTTTCCTGGCGTGGGTTAATACCAACTCGACTTTCGTGGACGCAATATCCTTGGGATATACGCCGCACATTCCTTTTCCATCGCGGTGCACCTTGAGCATAATTTGCGTAGCAGTCTCACGGTCCTTGTTAAAAAATTCCTGAATGATCGCCACCACGAATTCCATCGGGGTGTAATCATCGTTTAACAATAACACCTGGTACATGGGCGGTGGTTTGAGCTTTTGCTCTTGCCGTGCCAGTACCGTCCCGTTGTCATGCTTAGTTGCCATGCGTCTATTCTAATGCTTTCACTTAGGCGCGCAACGCCCGAAAATAATTTCCACTACGGTTTTTAACGATATTACGCCCTTTCTTGATAGTGCGCAGGTGGCACCGGTTTAGAGTAAAACAAGAGCGATTTGTTGCGAACGCGCATAAATCAATAATTTGCCCATCTGATATCCCTTGACTTTCCCTTTTTTTCCTAGAACAATGAACAATATTGGCAAGGGTGAAAGTTGCACACTTGTTAATACGAAGTGAGCAGGTTTGAAGAGGGGGCAGCATTGCGCGAGCCTTCTTGCTTTTACGGCTCGTGTGATTAGTTCAATTTGAAAGAAGCTTTTTATTATGGCAACTGGTACTGTCAAGTGGTTCAACGATTCCAAAGGTTTCGGTTTTATCACTCCGGATGATGGTGGCGAAGATCTGTTCGCACACTTTTCCGCAATCCAAATGAACGGCTTCAAGACCCTCAAAGAAGGTCAAAAAGTCCAGTTCGAAGTAACGCAAGGCCCGAAAGGCAAGCAAGCTTCCAACATTCAGGCTCCCTGATTACCTTCAGAATGCCAAATGAAAAGCCCCGCTACCGCGGGGCTTTTTTATTGAATACGGGCCGCCGCAACATCAGCGCGTACCCGTAAAAAAAGCCGGACCAAGTCCGGCTTTCGTGTTTTTCCGCTGGCGCAGAATTACATGTTTTCGATCATGACATCGCCAAAGCCCGAGCAAGAAACCTGGGTTGCACCAGCCATCAGGCGGGCGAAATCGTAGGTGACTTTTTTCGAGTCGATGGATTTTTCCATCGAACTGATGATCAGGTCGGCTGCCTCGAGCCAGCCCATGTGACGCAACATCATTTCAGCGGACAGGATCAGCGAACCCGGGTTCACGTAATCCTTGCCGGCATACTTCGGTGCCGTGCCGTGGGTTGCTTCGAACATGGCCACGGAATCCGACAGGTTGGCGCCCGGGGCGATGCCGATGCCGCCGACTTGCGCTGCCAGGGCGTCGGAAATGTAGTCGCCGTTCAGATTCAGGGTGGCAATCACGCTGTACTCGTTCGGACGCAGCAGGATCTGCTGCAGGAACGCGTCGGCGATCGAATCCTTGACGATGATTTCCTTGCCGGTCTTCGGATTCTTGAACTTGCACCATGGGCCGCCATCGACCAGCTCGGCGCCGAATTCCTTCTGTGCCAGGGCGTAAGCCCAGTCACGGAAGCCGCCTTCGGTGTACTTCATGATGTTGCCCTTGTGAACGATCGTCACGGAAGGCTTGTCATTGTCGATGGCGTACTGGATTGCCTTGCGCACCAGGCGCTCAGTGCCTTCACGCGAAACCGGCTTGATGCCGATACCGGAAGTATTCGGGAAACGGATCTTCTTGACGCCCATTTCCTTGGTCAGGAATTCAATGAGTTTCTTGACGCTGTCGGAACCTTCGGCCCATTCGATGCCGGCGTAAATATCTTCGGAGTTTTCACGGAAGATGACCATGTCGGTCTTTTCCGGCTCACGCACCGGCGAAGGCACGCCCTTGAAATAGCGCACCGGGCGCAGGCAGACATACAGGTCCAGTTCCTGGCGCAGTGCCACGTTCAGGGAACGGATGCCGCCGCCGACTGGCGTGGTCAGCGGGCCCTTGATCGAGACGACGTAGTCCTTCAGGACCTTCAGGGTTTCTTCCGGCAGCCAGACGTCAGGACCATAGACCTTGGTCGACTTTTCGCCTGCATAGATTTCCATCCAGTTGATCTTGCGCTTGCCGCCATAGGCCTTGGCAACGGCAGCATCGACCACCTTGATCATGACCGGGCTGATGTCCACGCCGGTGCCGTCACCCTCGATGTAGGGAATGACTGGATTGTCGGGAACGGTCAGGGAGAAATCGGGGTTGACGGTGATTTTTTGGCCGTCTGCAGGTACTTTGATATGTTGGAACAT

Protein sequences of DBSCAN-SWA_1

>CP035311|3251224:3258659|3257405_3258659_-|QAU35312.1|DBSCAN-SWA
MFQHIKVPADGQKITVNPDFSLTVPDNPVIPYIEGDGTGVDISPVMIKVVDAAVAKAYGGKRKINWMEIYAGEKSTKVYGPDVWLPEETLKVLKDYVVSIKGPLTTPVGGGIRSLNVALRQELDLYVCLRPVRYFKGVPSPVREPEKTDMVIFRENSEDIYAGIEWAEGSDSVKKLIEFLTKEMGVKKIRFPNTSGIGIKPVSREGTERLVRKAIQYAIDNDKPSVTIVHKGNIMKYTEGGFRDWAYALAQKEFGAELVDGGPWCKFKNPKTGKEIIVKDSIADAFLQQILLRPNEYSVIATLNLNGDYISDALAAQVGGIGIAPGANLSDSVAMFEATHGTAPKYAGKDYVNPGSLILSAEMMLRHMGWLEAADLIISSMEKSIDSKKVTYDFARLMAGATQVSCSGFGDVMIENM
>CP035311|3251224:3258659|3257064_3257268_+|QAU35311.1|DBSCAN-SWA
MATGTVKWFNDSKGFGFITPDDGGEDLFAHFSAIQMNGFKTLKEGQKVQFEVTQGPKGKQASNIQAP
>CP035311|3251224:3258659|3256415_3256724_-|QAU35310.1|protease|DBSCAN-SWA
MATKHDNGTVLARQEQKLKPPPMYQVLLLNDDYTPMEFVVAIIQEFFNKDRETATQIMLKVHRDGKGMCGVYPKDIASTKVELVLTHARKAGHPLQCVMEEA
>CP035311|3251224:3258659|3252952_3254041_+|QAU35308.1|DBSCAN-SWA
MTERFTRTSNRKQMTCRLASLLLPAALLTACAVPPQQPAQPTPVIASVPAVPGSAQQQALRAMAEAQSRIDRVTGPLLVNNAPLCKSHAYKLLGFSAKNRYSYSAELADTVQQTFGYGERLQVTNVLAGSGAERVGVLRGDILIAAENKEIPPGENAERQAATVLGPLVRGRALVKLTVERKGAPMSLVVPLTQSCGFSVDLGNADHVNAYADGRRVVITRGMLNFARSEQELAYVIAREMAHNILGHAGNQRMGATLGGIIDNLIRVTPDLDTMTGRSGVIPYPAALDADADRLGLYLAARAGYNVDAAAAFWQRLAERYPASVANGYTAIHPDNSARLAALEKAAAEIRAKQTTKRPLLP
>CP035311|3251224:3258659|3251224_3252415_+|QAU35306.1|DBSCAN-SWA
MELAGKKIILGLSGGIACYKAAELARLLGKAGASVQVAMTDAATHFMTTVTMQALTGKPVFTDQWDGRIANNMAHIDLSREADAILIAPCSADFMFKLAHGACDDLLSTLCLARPAGLPLLVAPAMNVEMWQNPATQRNAARLKEDGIRIMGPGAGEQACGETGLGRMLEPEQLLEEVIASFQPKVLSGKRILLTAGPTFEPIDPVRGITNLSSGKMGFAIARAAREAGAQVTLVTGPTGLQTPYGVTRIDVQTAQQMQDAVLKQVSGQDVFIAVAAVADWRVVGASEQKLKKDAAGTPPQLQLAPNPDILAAVAALPQRPYCVGFAAESENLAQYGEEKRRRKNVPLLVGNIGHQTFGRDDNELTLFEDSGQTTLPRADKQALARQLVVAIARRI
>CP035311|3251224:3258659|3252491_3252941_+|QAU35307.1|DBSCAN-SWA
MKSIDVKILDPRMKDQLPAYATGGSAGLDLRACLEAPLTLRPGETHLVPTGLAIHISDPAYAAMILPRSGLGHKHGIVLGNLVGLIDSDYQGQLMVSTWNRGQTEFVLNPMERLAQLVIVPVLQVGFNVVEEFDSSERGAGGFGSTGKH
>CP035311|3251224:3258659|3254118_3256419_-|QAU35309.1|protease|DBSCAN-SWA
MIAQELEVSLHMAFVEARQARHEFITVEHLLLALLDNPSAAEVLRACAVNIEDLRKTLTNFISDNTPTVPGTSEVDTQPTLGFQRVIQRAIMHVQSASNGKKEVTGANVLVAIFGEKDSHAVYYLHQQGVTRLDVVNFISHGVRKDQQSDPQKSPEGAEDAQVEGQAKESPLEQFTQNLNKAAAEGKIDPLIGREAEVERVIQTLCRRRKNNPLLVGEAGVGKTAIAEGLAWRVTQGDVPEVLQNAVVYSLDMGALLAGTKYRGDFEQRLKAVLKQLKDNPNGILFIDEIHTIIGAGAASGGTLDASNLLKPALSSGQLKCIGATTFTEYRGVFEKDHALSRRFQKIDVNEPTVEQTVQILRGLKSRFEEHHGIKYSASALTTAAELAARFINDRHLPDKAIDVIDEAGAAQRILPKSKQKKTIGKAEIEDIIAKIARIPPQTVNQDDRSKLQTIDRDLKNVVFGQDPAIEALASAIKMARAGLGKTDKPIGSFLFSGPTGVGKTEVAKQLAFILGIDLIRFDMSEYMERHAVSRMIGAPPGYVGFDQGGLLTEAITKKPHAVLLLDEIEKAHPDIFNILLQVMDHGTLTDNNGRKADFRNVIIIMTTNAGAESLQRRTIGFTEQREAGDEMADIKRMFTPEFRNRLDAVISFKALDEEIILRVVDKFLMQLEEQLHEKKVDAVFSEKLRRFLAKKGFDPLMGARPMSRLIQDMIRKALADELLFGRLVSGGRVTVDLDEKDQVKLEFIEGDIAPPAAPLEAAEIE

Homologous phage analysis in the prophage region

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU35306.1|3251224_3252415_+	bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC	Q9HH70	Methanothermobacter_phage	1.0e-41	32.1
QAU35307.1|3252491_3252941_+	dUTP diphosphatase	Q2NP83	Xanthomonas_phage	1.9e-49	63.5
QAU35308.1|3252952_3254041_+	peptidase M48	NA	NA	NA	NA
QAU35309.1|3254118_3256419_-|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.4e-169	42.7
QAU35310.1|3256415_3256724_-|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	1.3e-12	42.0
QAU35311.1|3257064_3257268_+	cold-shock protein	A0A2H4N7Y6	Lake_Baikal_phage	1.4e-23	81.8
QAU35312.1|3257405_3258659_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	5.2e-12	64.8