CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035299	Corynebacterium pelargi strain 136/3 chromosome, complete genome	1 crisprs	csb2gr5,cas3,csb3,cas4,cas1,cas2,DinG,DEDDh,csa3,WYL	0	1	0	0

Cas Category Instructions

Results visualization

1. CP035299

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CRISPR-Cas detection and classification

Crispr_ID: CP035299_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035299_1

161662-162429

Unclear

Consensus_repeat	Method
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	PILER-CR
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	CRISPRCasFinder
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	CRT

10 spacers

cas2,cas1,cas4,csb3,cas3,csb2gr5,csb1gr7

The CRISPR arrays of CP035299_1

>merge|CP035299|1|161662-162429|PILER-CR,CRISPRCasFinder,CRT
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGCGCGGCGCGATCAGCCGTCATGATGAACTCACCCAGCGATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGCTTGGTTGAGACGTTGGGCATTGGTAATTGGGTGCCGCATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGCGACCCAAGAAGAACGCGACCAATGCGTAGGCATGTGGATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGCATCGCTGACCGGTACGGCTCCCCGATCGAGGCGCGCAATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGCACGGGTCCTAGCTCGGTGAACGATTCCACACCGCCGATCGCTGCAGCTTGGGCTGCAGTCCTACATTGAGGCGGTGTGCCAGCATCACCACACGTAATCCCATTGCGCGGATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGCCTCGTGGCACCTGATAGCGGGGCAGAAGAAGCGCACCGGATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGCGCGGGGTCATGGCGACCCCCTAAGCCTGGGGCGCGCATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGCCAGACACAAGGCGTATCTACGAGCGGGCGAAAGCCTATCGCTGCAGTTTCGGCTGCAGTCCTACATTGAGGCGTCGTGGAATACCGCTACGACGGCGAGGTCAACCCCGACATCGCTGCAGCTTCGGCTGCAGCCCTACATTGCGGT

>CP035299|1|1|161662-162354|PILER-CR
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	GCGGCGCGATCAGCCGTCATGATGAACTCACCCAGCG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	TTGGTTGAGACGTTGGGCATTGGTAATTGGGTGCCGC
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	GACCCAAGAAGAACGCGACCAATGCGTAGGCATGTGG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	ATCGCTGACCGGTACGGCTCCCCGATCGAGGCGCGCA
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	ACGGGTCCTAGCTCGGTGAACGATTCCACACCGCCG
ATCGCTGCAGCTTGGGCTGCAGTCCTACATTGAGGC	GGTGTGCCAGCATCACCACACGTAATCCCATTGCGCGG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	CTCGTGGCACCTGATAGCGGGGCAGAAGAAGCGCACCGG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	GCGGGGTCATGGCGACCCCCTAAGCCTGGGGCGCGC
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	CAGACACAAGGCGTATCTACGAGCGGGCGAAAGCCT
ATCGCTGCAGTTTCGGCTGCAGTCCTACATTGAGGC

>CP035299|1|1|161662-162429|CRISPRCasFinder
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	GCGGCGCGATCAGCCGTCATGATGAACTCACCCAGCG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	TTGGTTGAGACGTTGGGCATTGGTAATTGGGTGCCGC
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	GACCCAAGAAGAACGCGACCAATGCGTAGGCATGTGG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	ATCGCTGACCGGTACGGCTCCCCGATCGAGGCGCGCA
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	ACGGGTCCTAGCTCGGTGAACGATTCCACACCGCCG
ATCGCTGCAGCTTGGGCTGCAGTCCTACATTGAGGC	GGTGTGCCAGCATCACCACACGTAATCCCATTGCGCGG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	CTCGTGGCACCTGATAGCGGGGCAGAAGAAGCGCACCGG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	GCGGGGTCATGGCGACCCCCTAAGCCTGGGGCGCGC
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	CAGACACAAGGCGTATCTACGAGCGGGCGAAAGCCT
ATCGCTGCAGTTTCGGCTGCAGTCCTACATTGAGGC	GTCGTGGAATACCGCTACGACGGCGAGGTCAACCCCGAC
ATCGCTGCAGCTTCGGCTGCAGCCCTACATTGCGGT

>CP035299|1|1|161662-162429|CRT
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	GCGGCGCGATCAGCCGTCATGATGAACTCACCCAGCG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	TTGGTTGAGACGTTGGGCATTGGTAATTGGGTGCCGC
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	GACCCAAGAAGAACGCGACCAATGCGTAGGCATGTGG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	ATCGCTGACCGGTACGGCTCCCCGATCGAGGCGCGCA
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	ACGGGTCCTAGCTCGGTGAACGATTCCACACCGCCG
ATCGCTGCAGCTTGGGCTGCAGTCCTACATTGAGGC	GGTGTGCCAGCATCACCACACGTAATCCCATTGCGCGG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	CTCGTGGCACCTGATAGCGGGGCAGAAGAAGCGCACCGG
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	GCGGGGTCATGGCGACCCCCTAAGCCTGGGGCGCGC
ATCGCTGCAGCTTCGGCTGCAGTCCTACATTGAGGC	CAGACACAAGGCGTATCTACGAGCGGGCGAAAGCCT
ATCGCTGCAGTTTCGGCTGCAGTCCTACATTGAGGC	GTCGTGGAATACCGCTACGACGGCGAGGTCAACCCCGAC
ATCGCTGCAGCTTCGGCTGCAGCCCTACATTGCGGT

Protein	Signature genes	Signature genes Name	Protein_function
CP035299.1\|QAU51467.1\|172577_174125_+\|Amino-acid-carrier-protein-AlsT	unknown	unknown	gnl\|CDD\|376500
CP035299.1\|QAU51448.1\|150005_151193_-\|Inner-membrane-transport-protein-YnfM	unknown	unknown	gnl\|CDD\|340882
CP035299.1\|QAU51464.1\|167399_169550_-\|High-affinity-choline-transport-protein	unknown	unknown	gnl\|CDD\|236635
CP035299.1\|QAU51461.1\|164413_165070_-\|Putative-undecaprenyl-diphosphatase-YbjG	unknown	unknown	gnl\|CDD\|239486
CP035299.1\|QAU51449.1\|151239_151842_-\|Superoxide-dismutase-[Mn]	unknown	unknown	gnl\|CDD\|223678
CP035299.1\|QAU51459.1\|162592_163279_-\|PAP2-superfamily-protein	unknown	unknown	gnl\|CDD\|239486
CP035299.1\|QAU51455.1\|159751_160375_+\|PD-(D/E)XK-nuclease-superfamily-protein	cas4	cd09637_cas4_CAS-I:CAS-II:CAS-V	gnl\|CDD\|273040
CP035299.1\|QAU51460.1\|163405_164359_+\|L-lactate-dehydrogenase-1	unknown	unknown	gnl\|CDD\|178836
CP035299.1\|QAU51465.1\|169774_171568_+\|Oxygen-dependent-choline-dehydrogenase	unknown	unknown	gnl\|CDD\|235000
CP035299.1\|QAU51456.1\|160441_161176_+\|CRISPR-associated-protein-Cas4/endonuclease-Cas1-fusion	cas1	cd09634_cas1_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187766
CP035299.1\|QAU51457.1\|161202_161475_+\|CRISPR-associated-endoribonuclease-Cas2	cas2	cd09725_cas2_CAS-I:CAS-II:CAS-III:CAS-V	gnl\|CDD\|187856
CP035299.1\|QAU51452.1\|154227_155772_+\|hypothetical-protein	csb2gr5	cls000315_csb2gr5_CAS-I-U	gnl\|CDD\|274005
CP035299.1\|QAU51458.1\|162475_162658_+\|Peptide-methionine-sulfoxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|234604
CP035299.1\|QAU51450.1\|151985_152645_+\|Peptide-methionine-sulfoxide-reductase-MsrA	unknown	unknown	gnl\|CDD\|234604
CP035299.1\|QAU51466.1\|171601_172495_+\|hypothetical-protein	unknown	unknown	unknown
CP035299.1\|QAU51454.1\|158515_159571_+\|hypothetical-protein	csb3	cd09764_csb3_CAS-I-U	gnl\|CDD\|187733
CP035299.1\|QAU51451.1\|153020_154226_+\|CRISPR-associated-protein	csb1gr7	pfam09617_csb1gr7_CAS-I-U	gnl\|CDD\|378223
CP035299.1\|QAU51462.1\|165157_165811_+\|putative-glycerophosphoryl-diester-phosphodiesterase-1	unknown	unknown	gnl\|CDD\|176524
CP035299.1\|QAU51453.1\|155771_158516_+\|helicase-Cas3	cas3	cd09696_cas3_CAS-I-U	gnl\|CDD\|274235
CP035299.1\|QAU51463.1\|165788_167357_-\|Betaine-aldehyde-dehydrogenase	unknown	unknown	gnl\|CDD\|143437

Protein	Function_ID	Function_description	E-value
CP035299.1\|QAU51467.1\|172577_174125_+\|Amino-acid-carrier-protein-AlsT	gnl\|CDD\|376500	pfam01235, Na_Ala_symp, Sodium:alanine symporter family.	0
CP035299.1\|QAU51448.1\|150005_151193_-\|Inner-membrane-transport-protein-YnfM	gnl\|CDD\|340882	cd17324, MFS_NepI_like, Purine ribonucleoside efflux pump NepI and similar transporters of the Major Facilitator Superfamily. This family is composed of purine efflux pumps such as Escherichia coli NepI and Bacillus subtilis PbuE, sugar efflux transporters such as Corynebacterium glutamicum arabinose efflux permease, multidrug resistance (MDR) transporters such as Streptomyces lividans chloramphenicol resistance protein (CmlR), and similar proteins. NepI and PbuE are involved in the efflux of purine ribonucleosides such as guanosine, adenosine and inosine, as well as purine bases like guanine, adenine, and hypoxanthine, and purine base analogs. They play a role in the maintenance of cellular purine base pools, as well as in protecting the cells and conferring resistance against toxic purine base analogs such as 6-mercaptopurine. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The NepI-like family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.33952e-59
CP035299.1\|QAU51464.1\|167399_169550_-\|High-affinity-choline-transport-protein	gnl\|CDD\|236635	PRK09928, PRK09928, choline transport protein BetT; Provisional.	0
CP035299.1\|QAU51461.1\|164413_165070_-\|Putative-undecaprenyl-diphosphatase-YbjG	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	1.81601e-22
CP035299.1\|QAU51449.1\|151239_151842_-\|Superoxide-dismutase-[Mn]	gnl\|CDD\|223678	COG0605, SodA, Superoxide dismutase [Inorganic ion transport and metabolism].	8.8254e-98
CP035299.1\|QAU51459.1\|162592_163279_-\|PAP2-superfamily-protein	gnl\|CDD\|239486	cd03392, PAP2_like_2, PAP2_like_2 proteins. PAP2 is a super-family of phosphatases and haloperoxidases. This subgroup, which is specific to bacteria, lacks functional characterization and may act as a membrane-associated lipid phosphatase.	3.31761e-34
CP035299.1\|QAU51455.1\|159751_160375_+\|PD-(D/E)XK-nuclease-superfamily-protein	gnl\|CDD\|273040	TIGR00372, conserved_hypothetical_protein, CRISPR-associated protein Cas4. This model represents a family of proteins associated with CRISPR repeats in a wide set of prokaryotic genomes. This scope of this model has been broadened since it was first built to describe an archaeal subset only. The function of the protein is undefined. Distantly related proteins, excluded from this model, include ORFs from Mycobacteriophage D29 and Sulfolobus islandicus filamentous virus and a region of the Schizosaccharomyces pombe DNA replication helicase Dna2p.	3.95709e-17
CP035299.1\|QAU51460.1\|163405_164359_+\|L-lactate-dehydrogenase-1	gnl\|CDD\|178836	PRK00066, ldh, L-lactate dehydrogenase; Reviewed.	0
CP035299.1\|QAU51465.1\|169774_171568_+\|Oxygen-dependent-choline-dehydrogenase	gnl\|CDD\|235000	PRK02106, PRK02106, choline dehydrogenase; Validated.	0
CP035299.1\|QAU51456.1\|160441_161176_+\|CRISPR-associated-protein-Cas4/endonuclease-Cas1-fusion	gnl\|CDD\|187766	cd09634, Cas1_I-II-III, CRISPR/Cas system-associated protein Cas1. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas1 is the most universal CRISPR system protein thought to be involved in spacer integration; Cas1 is metal-dependent deoxyribonuclease, also binds RNA; Shown to possess a unique fold consisting of a N-terminal beta-strand domain and a C-terminal alpha-helical domain.	5.19039e-74
CP035299.1\|QAU51457.1\|161202_161475_+\|CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|187856	cd09725, Cas2_I_II_III, CRISPR/Cas system-associated protein Cas2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas2 is present in majority of CRISPR/Cas systems along with Cas1; RNAse specific to U-rich regions; Possesses an RRM/ferredoxin fold.	2.1577e-18
CP035299.1\|QAU51452.1\|154227_155772_+\|hypothetical-protein	gnl\|CDD\|274005	TIGR02165, CRISPR-associated_protein_GSU0054_family, CRISPR-associated protein GSU0054/csb2, Dpsyc system. This model represents a CRISPR-associated protein from the Dpsyc subtype (a type I-C variant), named for Desulfotalea psychrophila LSv54. CRISPR systems confer resistance in prokaryotes to invasive DNA or RNA, including phage and plasmids. CRISPR-associated proteins typically are found near CRISPR repeats and other CRISPR-associated proteins, have low levels of sequence identify, have sequence relationships that suggest lateral transfer, and show some sequence similarity to DNA-active proteins such as helicases and repair proteins.	2.82891e-56
CP035299.1\|QAU51458.1\|162475_162658_+\|Peptide-methionine-sulfoxide-reductase-MsrA	gnl\|CDD\|234604	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA.	3.1721e-21
CP035299.1\|QAU51450.1\|151985_152645_+\|Peptide-methionine-sulfoxide-reductase-MsrA	gnl\|CDD\|234604	PRK00058, PRK00058, peptide-methionine (S)-S-oxide reductase MsrA.	2.68854e-123
CP035299.1\|QAU51454.1\|158515_159571_+\|hypothetical-protein	gnl\|CDD\|187733	cd09764, Csb3_I-U, CRISPR/Cas system-associated RAMP superfamily protein Csb3. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; RAMP superfamily protein; Might be a catalytically active RNA endoribonuclease.	2.37402e-77
CP035299.1\|QAU51451.1\|153020_154226_+\|CRISPR-associated-protein	gnl\|CDD\|378223	pfam09617, Cas_GSU0053, CRISPR-associated protein GSU0053 (Cas_GSU0053). This entry is found in CRISPR-associated (cas) proteins in the genomes of Geobacter sulfurreducens PCA and Desulfotalea psychrophila LSv54 (both Desulfobacterales from the Deltaproteobacteria), Gemmata obscuriglobus (a Planctomycete), and Actinomyces naeslundii MG1 (Actinobacteria).	3.92713e-38
CP035299.1\|QAU51462.1\|165157_165811_+\|putative-glycerophosphoryl-diester-phosphodiesterase-1	gnl\|CDD\|176524	cd08582, GDPD_like_2, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial glycerophosphodiester phosphodiesterases. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in a group of uncharacterized bacterial glycerophosphodiester phosphodiesterase and similar proteins. They show high sequence similarity to Escherichia coli glycerophosphodiester phosphodiesterase, which catalyzes the degradation of glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	1.70386e-51
CP035299.1\|QAU51453.1\|155771_158516_+\|helicase-Cas3	gnl\|CDD\|274235	TIGR02621, CRISPR-associated_helicase_Cas3, CRISPR-associated helicase Cas3, subtype Dpsyc. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.	6.72752e-79
CP035299.1\|QAU51463.1\|165788_167357_-\|Betaine-aldehyde-dehydrogenase	gnl\|CDD\|143437	cd07119, ALDH_BADH-GbsA, Bacillus subtilis NAD+-dependent betaine aldehyde dehydrogenase-like. Included in this CD is the NAD+-dependent, betaine aldehyde dehydrogenase (BADH, GbsA, EC=1.2.1.8) of Bacillus subtilis involved in the synthesis of the osmoprotectant glycine betaine from choline or glycine betaine aldehyde.	0

>CP035299.1|QAU51457.1|161202_161475_+|CRISPR-associated-endoribonuclease-Cas2
MAYDISNDRRRTRLASKLEKYGDRLQYSVFVVDASPAKLIRMKSEIEEVLDLQKDSVLLCDLGRLTELSEARFSFLGQSREITPGEAFVF
>CP035299.1|QAU51456.1|160441_161176_+|CRISPR-associated-protein-Cas4/endonuclease-Cas1-fusion
MQQHLASFNGRLDIAREFIAGKIAGQATFLRRNGGEAVANLSGHLRSLQREAEGCTSVGSLLGVEGEAAALYFQGFPLMLRGDGFEYFLEQWQGRQGRGALDPLNSALNFVYALLTAEAIKAVVSCGLDPHAGFLHSSGRNKPALALDLMEEFRASIGDSVVVSCINRRMLTKKHFSTVSGTPRLTPEGRKVLVAAFERRMSTQITHPTFGYAATWRRVLEIQARLILGCIDGTQPKYRAVRTR
>CP035299.1|QAU51455.1|159751_160375_+|PD-(D/E)XK-nuclease-superfamily-protein
MALSSVCYGIVGRADLVEGDGDGTRVVEYKATPIRNRAEVSEATIVQLALQGICLEEAGKEVVGYSVYFTDRHRRIDVEVGEEEQSRALEFLERTRKICSEVQAPPPLEDDPRCRHCSHVGICLPDERSLSAVHRRILVANPDGQVLHLTTPGSRASIHRGRVVVKSADEELGSAPIERVQGVTVHGNVDISSALLREFFWRDITVV
>CP035299.1|QAU51454.1|158515_159571_+|hypothetical-protein
MTTVTLGGSIHSALTHFALLGLAEIAESTFGAGVTLGWSDAAVPRAWVEVPGASEDEVAQAVLDAARTESPRDWPSVRLTYASGATVSPFSPRIKAIDTDKHPNDWEKHQAERHIVFDALLEAGDWTELRWLDALGEASYWHVANNVRQPDRGASRWEMVSRQHGREFVSNRYSLICKEVARWPKKQVIDGVTGVQVRDVIGKQKTASRSSTGLTPPGPADNALVFCALRGIAAFPLAHRVEEINATPGAWPATVLHPKSMLLPVPTAPVTPARLRSVLVSSQLADLHTAMMTIDSDQENRKSLALEADAARAWLAARMCRAVVRFPILKAGSDSAPERQVLEGEVHLNVR
>CP035299.1|QAU51453.1|155771_158516_+|helicase-Cas3
MTSVSAPVLSPDDFHKFFEAVNPGYVPFAWQQRLVDFIVAHGHWPEQVIAPTGTGKSAVVDVHVFVNALAAIGAAPRVPRRLFTVVNRRALVDNQHDRALKIAELLRAAVSGQGPDILVKVAGALASFRTAQANDEAPVPIDVGLLRGGALRDNPTLLDPAACAVVSATPDMWGSRLLFRGYGASWRARPREAAMAAYDSVMVLDESHLNSQLLVTARRIAELAKREADLGVPKLQVVETTATPSTTSEYQVSIEEEDVADDQVLAARLNASKPLTLKPSAHWQAQATGKRSKKQYIGELCDTVLGLLEETNTLESVKPRTVGCIVNRVNTAVDLASMLQKANAELSIKVLVGRMRPADLVQLRREYPALFTVEGDERIDLLIATQALEVGIDVDFAAMVTELASASALAQRFGRVNRLGQRTSAPITVMVPEENPSKDALPYTLTDVVNGLGWLESLEAAGGALSPSALMAHPAPIASRRRALYQRPEWANVHQWSRTGDALFADDDLSLWLRDDLAPEQAHAGIVVREGLPVDDLEAQAVLQAVPPRAMEEFPAKVQTVRLLLEALVEGKAGDNAVARAFIFRDGTYALVRPGGVAPRIRPGDVLIVDYGAKFTKAQVAVDPADADSAPRAVTEGMPVLYANADHRHNVASRSSLQDAPRSRRDFLGLDAEAATVLWRAGAPDRAADTVVLPVATSDDLQAVPWFLVLHEDHLPDDAPVRQQWTPSVKPVTLTDHSHDVAERARRLSTAVGLGAEFEVAVVSAAFHHDDGKADLRFQRMLTDGEALEEPLAKSAGMRLKIAASTSARAGLPVGWRHEQYSVIRAAQQIGDKLVLRLIGTSHGHGRRGFPHVGAELLPPGAAETEARLAEDFFTVGAWDELVERTEIEYGHYAVAFLEALVRAADNQVSKEGH
>CP035299.1|QAU51452.1|154227_155772_+|hypothetical-protein
MPTLDISATFPLGVYLGHRADGSPDPFPDIARLHSALLHAAATGTTAKEQDGRVQPSEDSLAALRWLEEHPPSRLHVPTHRRQSNDENRITYRNEGWFEKSKFKVSARRMSEGTTFNGPIAYSWDDVPEAVVETVFELCSDVAVLGEGGSLVKLEHRSLPPTLVLDTEASMFTPGGEHIRGVAPGRTDALIQAFEAANPGKGKAQKTAKKEDSRTAEATTTGLRDLRYRRPDAPASSTPWDQVLLLELDGDVIPEQHRQAWCVAMHRAIIAAIQSDVPPMVTGQYPKSMPDRPSNHLSIQYLTKEQVERHGLQNHAIALLLPNDATAEDLIRLAQGLKSIRTLRCKYGRRRLEFNGVAVRAEEFWEAPKPGSYRLWLPTPLAVTEVRSPKRSRTGGRPWGLADAGLVSIALVWSAFLPKVKGNSDERHIARHEKARNNGVRVARTTLRAANTQHFIYKTRKGSVPQMWTGLIDLGELAPTTVMAAIGQSRHLGGGLLVPVDVPEALVTTLMGDN
>CP035299.1|QAU51451.1|153020_154226_+|CRISPR-associated-protein
MISYDDLLKACRRGGASTLTSVTELQPAAGPHASVAPAKFVAGNTSTFAFEERFVDGKAAGVVVIDSKQSQINRAESALAQSIRDGEAVVSRVPRLVVSYEAKKELMDLELPHRAFDGHIRAANLDGTPVTQTEEFQALRNSTPGNARPLLEASPFSLVGGVWDSTRREDQVRFRSVMVGEIIGVLGNQETPASDRASRRGGARVDPVALSVQLTGPELQGILDAQRDELSPGSIETVEKKIKKLKKGERASASNLGLGAIPPQLDALGGVSCSRILRSWVLSFAALRQIRFGAGTEGDAACRALLAALAIAAIARSEEELNLRANCDLRESGEPVVTLDERFGKERTLDPFSVEAADELLEQAILNAREKAGVEWNGQELRFVGNPAIIHGAVDAEEAES
>CP035299.1|QAU51450.1|151985_152645_+|Peptide-methionine-sulfoxide-reductase-MsrA
MGWLFAREPELVDADRALKGGRHPVLEHPRPHAVLGTSLVGPWEEGLRELYVGLGCFWGAEKLFWQMDGVHVTSVGYAGGITENPTYREVCSGRTNHTEIVHIVYDPKQVRFEQLVAAALEAHDPTQGYRQGNDVGTQYRSAIYTQDAQEAERAAAMVEAYGKRLEQEGYPRITTEVKPLADTPAGRYFLAEDEHQQYLHKNPYGYCPHHSTGVACGVE
>CP035299.1|QAU51449.1|151239_151842_-|Superoxide-dismutase-[Mn]
MAKYELPELDYAYDALEPHISAEIMELHHSKHHQNYVNGANKALERLAEARENGTIGDAVTALSKDLAFNLGGHTNHSIFWKNLSPNGGGEPTGALAEAIKEEFGSFEAFKKHFSAAALGLQGSGWAILGYDHIGGRLVVEQLTDQQGNISANLTPLLMLDMWEHAFYLQYKNVKADYVEAVWNVFNWDDVQARYEAAAK
>CP035299.1|QAU51448.1|150005_151193_-|Inner-membrane-transport-protein-YnfM
MSDTSGLRRGTADYRRAVIALLAAGLATFNALYCTQAMLPTLTHALDVSPTTAALTISAPTGALALCIVPASILSERFGRGKVLIISALLATLVGLALPLAQNAPTLVALRGLQGVFIAGVPAVAMTWLSEEIAGVDQPRAMGIYISGNALGGLLGRMIPALLLEVTSWRWALFAATVLAFVMAVLMAWLLPYQRRFHPRALHLREEIAAMVGHWRRPELALLFFFGFAGLGVFVSLYNYVGFRMIHTFGLSEALVGLVFLLYLAGSWSSARAGAWMQRVGRGPALTYGAVAMVLGLLLSMPAHLWLTLFGMLVFTAAFFFVHSTASSWVGRIATHHRAEGASMYLLSYYVGSSVLGWLSGYLFASLSWVGFIAAIMVWPALLVAASLLLRHKAS
>CP035299.1|QAU51458.1|162475_162658_+|Peptide-methionine-sulfoxide-reductase-MsrA
MITTEVKPLADTPAGRYFLAEDEHQQYLHKNPYGYCPHHSTGVACGPDIAQDGPEDSADH
>CP035299.1|QAU51459.1|162592_163279_-|PAP2-superfamily-protein
MKTQNPHATHAPSARSYSARRTVTHILLAAVLVAISALVYRNTTAGGWLAELDHQLLEHSYNDRSNTLAKWVTWYTNIGTTAFTAPIATALVVWLAWAKRSWWPIVITALSATCSVLTTTLVKEWLGRPRPEHTFAVAPFEYAPSFPSGHTLNAVVVFGIIAILYASTLGYILAGIYILLMGASRIWLGHHWFTDVLAGWLIGAAWLLVISAIFWPILRNIRATRHTR
>CP035299.1|QAU51460.1|163405_164359_+|L-lactate-dehydrogenase-1
MNKIVGNKVVLIGAGDVGVAYAYALVNQGTVDHLAIIDIDEKKLEGNVQDLNHGVVWAQSRTKVTKGTYADCEDAAMVVICAGAAQKPGETRLQLVGKNMKIMKSIVDEVMANNFDGIFLVASNPVDILTYAVWQYSGLDWHRVIGSGTVLDSARFRYMLGERYDVAPSSIHAYIIGEHGDTELPVLSSATVAGVSMRKQLEKNPGLEEELEKIFEETRDAAYKIIDAKGSTSYGIGMGLARITRAVIHNQEVALPCSALLEGQYGEENIYIGTPAVINRGGINRVVELELTDHELERFRHSAKVLRQVQEEFFPAQ
>CP035299.1|QAU51461.1|164413_165070_-|Putative-undecaprenyl-diphosphatase-YbjG
MHSQLRGILLILSAIMLGALSASTVIKGVDIKLLTWVAEHRFEHMIAATLALSNVFTPLSILGFAILAGALAWWVTSSRRAFSYIVFVVGAATLLSQGMKFIFQRPRPDAAFQVIPALNYAFPSGHVTGVVALSSAIVLLVLYVAGKQVALAAGFFAALLIGATAWSRVYLGVQWPSDIIAAALIGFGVALAASPILKAVEPEQSDVEGSREYRAALR
>CP035299.1|QAU51462.1|165157_165811_+|putative-glycerophosphoryl-diester-phosphodiesterase-1
MHIIAHRGFSSRYTEMSAEAYEKALELPIHGVECDVRLSKDGQLMCFHDPTLLRMFDDPRRVASTSSKELMDLGVLRLDDLLDMVLAYPNRHLYIEAKHPTRFGRMLEEQIVLRLCYRKLVDDPRMHYISFSTAGTRRMAKLAPKMHTVRLLRDWEWCTKAQGLSLAHGRAHPEKITANTYMFTVNEPEDIRWAQQQGVGMLATDVPDLALSLQTNQ
>CP035299.1|QAU51463.1|165788_167357_-|Betaine-aldehyde-dehydrogenase
MSTTFFDPTKCALLEGVYQGEGPASLYIDGQWQAAADGATRTITCPANGEKVGVVSEASEADTERAIEVARRTFDEGSWAETPAVERGKILLRTAALIREHKDAFAAAESADTGKRLPESEADMDDIANAFDYFGTLAQHGAGRVVDPGDPSVRSRIDAEPVGVCGLITPWNYPLLQVSWKVAPAIAAGNTFVLKQAELTPHTAMMLMTVLEQAGLPKGVGNLITGAGARCGNPLSTSPLVDMVSFTGGLATGKLIARNAAETIKRTALELGGKNPNVIFADADFDAAVDNALNGAFVHSGQVCSAGSRIIVEASIHDEFVAALVERTKKIKLGGPADADAETGALISDEHRQKVADYVDHAREQGAKVLCGGRVAEAEDNQGSHGTGNTDLSKGWFYLPTVIDQCDRSMDCVHDEAFGPTVTIETFSTEEEAIELANDTEYGLAGAVWTQDAGKAERVARGLRHGTIWINDFHPYLPQAEWGGMKQSGNGRELGPTGLAEYQEHKHVYQNIAPAVTGWFAG
>CP035299.1|QAU51464.1|167399_169550_-|High-affinity-choline-transport-protein
MRVEDQRPSNTEPETKVIVGSYRAGTPQEAKEGAAQTNWRVFIASAAGILAVTLWAFFGGESAEAALGSVTGWIATNLGWFYILTGTVVIIFVLAVAFAKTGTIRLGPDHSRPQFRLFSWAAMLFAAGIGVDLMFFAVAEPVTQYYAPPVGAGETREAARQAVVWALFHYGFTGWAMYALMGMAFGYYAYRLNMPLAIRSALYPIFGKRAKGAIGDAVDVAAMLGTVFGVAASLGIGVVQLNYGLKVMFDIPEGQAAQIALVVLSVGVATISAVSGVDRGIKMLSEINVGLALVLMAYIVIAGKTAFLMDGLVMNIGEYVSSLPGMTMDTFAFSEDPEYTKQWMGAWTLFFWAWWVAWAPFVGLFLARISRGRTLRQFIFGTLSIPFVFILLWMSFFGNSALDLVRSGDDAFGDAAMAEPQRGFYDLLATYPGSFFLIGLATLIGLLLYITSADSGALVMSNFTSKTDHSAQDGPVWSRIFWAVLVGLLTVVLLQIDGVTTVQSATVVMGLPFSIVMYMIMIGLIRSFRMEGTQSAARGIALHAAMSGRSDSGSHATTWRRRLSRANTWPSAQRCQNYIDQTVQPALEQVAAELSDRGLNTHLVSSAVTDIPVRSLDLTVDLGEEQNFRYQLFPVENPVPSFTRNTVGGELYYRLEVYDHTGSLGYDVFGYTQEQLIDNVLDLYERHLEFLHMQRDIPGRSDMSGGASPVMDWGKD
>CP035299.1|QAU51465.1|169774_171568_+|Oxygen-dependent-choline-dehydrogenase
MQDQFRALQQRFGGKHDTEGEVVEDRRRDVVIVGGGSAGSVLANRLSEDSNTDVLVLEAGRMDSLWDLFIHMPAAFSFPIGNKHYDWGYESEPEPEMNGRRIYHARGKVLGGSSSVNGMIFQRGNPMDYEKWGALPGMEHWDYKHVLPYFNKMETALGADPEDPRRGHNGPLKLTRGPATSPLFQAFFRSVQEAGYNLTNDVNGYRQEGFAPFDRNILGGKRLSAARAYLHPVMDRKNLDVRTRAFTTRVLFEGDKAVGVEYEWKGKKRRVYADKVILCGGAFNTPQLLQLSGIGDKDVLEKAGVEVKKHLPGVGENLQDHLEVYVQYNVTQPVSSQPYLKMWRRPFIGLQWLLSKKGPVASSHFEAGGFARSNDDEAYPNLMFHFLPMAVRYDGTVIDSPHGFQFHVGPMYSDTLGHVHIKSADPKEKPEIIFNYLATDQDRREWVEAVRVSRRLLDTKAMKEYTDGEISPGMDVQSDEEILEWVRNDAETALHPSCTAKMGSAEDEMAVVDPETMQVHGVDGLYVCDASVMPIITNGNIYAPVIMMAEKAADLIRGRKPLDPIDAPFYQAKKDMPLYAEGERVRDHVERIEGAWH
>CP035299.1|QAU51466.1|171601_172495_+|hypothetical-protein
MAKKKKQKEQLPEGMSRRQAKLAARAAERAKFEKDPRPYEGFSFETDLVALQEFVPSAIAKAQAKGKEVHLCTVLPGGGAALVREDGSIFVALQTQQRSQNPHRDLAFALSWALDAKPGSVLEVGVADGSQPKLEELLDKDQALEIEEFHDFNWWVPDPSMITPEYAQGLQMANESVLPSQRVKAPATAWWINPGEKAHIRWVRPEPEDALMKALARVAARDELHLGEGSKFAGVFRTHGVLVPVWDLDPERAPESYAEDLKALDAKLCQELENDEPLNAEERRRVETINSRQVTIR
>CP035299.1|QAU51467.1|172577_174125_+|Amino-acid-carrier-protein-AlsT
MADFIDALNGLVWSKGLIFLLLGAGAYFTISTGFMQIRCIPDMMRQIRHGEKSENGVSSFQSLMMSLAGRVGVGNIAGVATAIAFGGPGAVFWMWAVALLGSATSYIECTLGQIFKEQDRDTGEYRGGPAYYVEKAYKHTKAAPFMLVYALILAIVIIVSTSYFMPGVQANGVSAAVENAWNIDPKITAAILAIGLAVIIFGGVKRIATFASMVVPFMAAVYIVASLVILFKNYDQIPHVFGLIFNSAFDKEAAFSGFLGMAILWGVKRGLYSNEAGQGFGPQPAAAAEVSHPAKQGFVQSFAVYVDTLFVCSATAFIIISTDMYRVFEGGAEDGAVRYQGALPEGVPVGPGFVQSGLDTFAAGIGPSFVALAILFFAFTTVLAYYYLAETNAAYLNRWVKNHKARKAIIFTMRILVIISVIVGATTTPGAAWALGDIGAGATAWLNVIAILIIQVPAQKCLWDYRKQKKAGLEPDFDPEALGIRNADFWVERKRIMRERNLPNGAVVSTVNEEN

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035299_1	1.1\|161698\|37\|CP035299\|PILER-CR,CRISPRCasFinder,CRT	161698-161734	37	NZ_CP004394	Celeribacter indicus strain P73 plasmid pP73A, complete sequence	122112-122148	9	0.757

1. spacer 1.1|161698|37|CP035299|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP004394 (Celeribacter indicus strain P73 plasmid pP73A, complete sequence) position: , mismatch: 9, identity: 0.757

gcggcgcgatcagccgtcatgatgaactcacccagcg	CRISPR spacer
cgcgcgcgataggccgtcatgatgaactccggcaccg	Protospacer
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Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage