CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030053	Bradyrhizobium sp. CCBAU 51670 chromosome, complete genome	0 crisprs	DEDDh,csa3,cas3,WYL	0	0	3	0
CP030054	Bradyrhizobium sp. CCBAU 51670 plasmid unnamed1, complete sequence	0 crisprs	RT,DEDDh	0	0	3	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

609111 : 615741

uncultured_virus(33.33%)

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU44423.1\|609111_610068_-	RNA polymerase sigma factor RpoH	A0A248SJA5	Salicola_phage	2.5e-30	32.4
QAU44424.1\|610957_611416_-	heat-shock protein	A0A2H4N7P1	Lake_Baikal_phage	1.0e-18	41.5
QAU44425.1\|611847_612162_+	co-chaperone GroES	A0A221S4A8	uncultured_virus	2.6e-21	48.9
QAU44426.1\|612197_613817_+	chaperonin GroEL	A0A240F779	uncultured_virus	6.8e-174	59.7
QAU44427.1\|613904_614243_+	hypothetical protein	NA	NA	NA	NA
QAU44428.1\|614708_615167_+	heat-shock protein	A0A1B1IW69	uncultured_Mediterranean_phage	8.2e-24	40.2
QAU44429.1\|615249_615741_+	Hsp20/alpha crystallin family protein	A0A1B2LRT2	Wolbachia_phage	1.1e-13	34.6

DBSCAN-SWA_2

3537865 : 3546957

uncultured_Mediterranean_phage(87.5%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU46910.1\|3537865_3538705_+	segregation/condensation protein A	A0A1B1IVW1	uncultured_Mediterranean_phage	7.4e-31	36.3
QAU46911.1\|3538705_3539479_+	SMC-Scp complex subunit ScpB	A0A1B1IVT7	uncultured_Mediterranean_phage	1.9e-44	50.3
QAU46912.1\|3539644_3539878_+	twin-arginine translocase TatA/TatE family subunit	A0A1B1IVR9	uncultured_Mediterranean_phage	7.1e-08	63.6
QAU46913.1\|3539966_3540497_+	twin-arginine translocase subunit TatB	NA	NA	NA	NA
QAU46914.1\|3540493_3541309_+	twin-arginine translocase subunit TatC	A0A1B1IVR7	uncultured_Mediterranean_phage	1.2e-54	48.0
QAU46915.1\|3541504_3542836_+\|tRNA	serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.7e-99	47.2
QAU46916.1\|3542932_3543298_+	hypothetical protein	NA	NA	NA	NA
QAU50190.1\|3543316_3544198_+	5'/3'-nucleotidase SurE	A0A1B1ITZ2	uncultured_Mediterranean_phage	6.6e-38	38.3
QAU46917.1\|3544201_3544573_-	response regulator	NA	NA	NA	NA
QAU46918.1\|3544814_3545465_+	protein-L-isoaspartate O-methyltransferase	A0A1B1IU40	uncultured_Mediterranean_phage	2.4e-29	50.0
QAU46919.1\|3545574_3546957_+	peptidoglycan-binding LysM	Q8SBN9	Clostridium_phage	3.1e-18	40.9

DBSCAN-SWA_3

5111860 : 5121034

Escherichia_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU48201.1\|5111860_5113555_-	chemotaxis protein	A0A1B0V854	Salmonella_phage	1.2e-35	51.1
QAU48202.1\|5113787_5115479_-	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	5.2e-15	53.1
QAU48203.1\|5115646_5116921_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	7.5e-75	42.0
QAU48204.1\|5116917_5117700_-	hydroxypyruvate isomerase	NA	NA	NA	NA
QAU48205.1\|5117713_5118631_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	1.1e-67	49.2
QAU50342.1\|5118733_5119435_+	aldolase	A0A077SK32	Escherichia_phage	4.0e-46	48.3
QAU48206.1\|5119614_5120319_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	7.6e-13	25.7
QAU48207.1\|5120302_5121034_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.1e-11	25.8

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP030054

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

151635 : 158653

Pseudomonas_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAU50604.1\|151635_152889_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.5e-27	30.0
QAU50605.1\|154295_154490_-	hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	1.8e-09	58.7
QAU51203.1\|154523_155750_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.1e-27	29.7
QAU50606.1\|156311_156530_-	hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	7.6e-12	50.0
QAU50607.1\|156526_156928_-	IS66 family insertion sequence hypothetical protein	A0A1B0YZU7	Pseudomonas_phage	5.1e-06	56.5
QAU50608.1\|157224_157926_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	4.5e-13	29.5
QAU50609.1\|157918_158653_-	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	4.8e-10	23.1

DBSCAN-SWA_2

322812 : 355952

Enterobacteria_phage(22.22%)

transposase,integrase

attL 316974:317001|attR 329118:329145

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
316974:317001	attL	NA	NA	NA	NA
QAU50704.1\|322812_324006_-\|transposase	IS91 family transposase	NA	NA	NA	NA
QAU50705.1\|324015_324918_-\|integrase	integrase	S5W9T9	Leptospira_phage	2.9e-33	35.1
QAU50706.1\|330645_331890_+\|transposase	IS21 family transposase	U5N3F9	Enterobacteria_phage	4.5e-40	33.9
329118:329145	attR	NA	NA	NA	NA
QAU50707.1\|331889_332687_+	ATP-binding protein	U5N3V8	Enterobacteria_phage	5.3e-63	48.0
QAU50708.1\|333426_334248_-	enoyl-CoA hydratase/isomerase family protein	NA	NA	NA	NA
QAU50709.1\|334448_335987_+	malonyl-CoA synthase	A0A2H4PQM9	Staphylococcus_phage	9.1e-27	26.3
QAU50710.1\|336020_337409_+	amidase	NA	NA	NA	NA
QAU50711.1\|337708_338383_+	GntR family transcriptional regulator	NA	NA	NA	NA
QAU51222.1\|339260_339878_+	cysteine hydrolase	NA	NA	NA	NA
QAU50712.1\|340138_341461_+	CapA family protein	NA	NA	NA	NA
QAU50713.1\|341633_342736_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	3.6e-09	26.8
QAU51223.1\|343216_343816_-	YecA family protein	NA	NA	NA	NA
QAU50714.1\|343863_344409_-	hypothetical protein	A0A218MNE7	uncultured_virus	6.3e-23	37.4
QAU50715.1\|344411_345011_-	hypothetical protein	NA	NA	NA	NA
QAU50716.1\|345536_347162_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
QAU50717.1\|347158_348136_+	ABC transporter permease	NA	NA	NA	NA
QAU50718.1\|348132_349053_+	ABC transporter permease	NA	NA	NA	NA
QAU50719.1\|349052_350795_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-21	29.7
QAU50720.1\|352363_353176_-	hypothetical protein	A0A059NT77	Lactococcus_phage	8.5e-32	35.1
QAU50721.1\|353172_354642_-\|transposase	IS21 family transposase	NA	NA	NA	NA
QAU51224.1\|354923_355952_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.9e-20	30.4

DBSCAN-SWA_3

370783 : 450224

Acidithiobacillus_phage(18.75%)

transposase,integrase

attL 354637:354696|attR 435148:436552

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
354637:354696	attL	NA	NA	NA	NA
QAU50728.1\|370783_372298_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
QAU50729.1\|374081_374672_-	YecA family protein	NA	NA	NA	NA
QAU50730.1\|376309_376663_-	IS66 family insertion sequence hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	3.3e-17	45.1
QAU50731.1\|376659_377091_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
QAU50732.1\|377547_377766_+	hypothetical protein	NA	NA	NA	NA
QAU50733.1\|383814_384063_+	hypothetical protein	NA	NA	NA	NA
QAU50734.1\|384346_384694_+	IS66 family insertion sequence hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	4.0e-23	49.1
QAU50735.1\|384764_384986_+	hypothetical protein	NA	NA	NA	NA
QAU50736.1\|386584_387505_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	2.4e-75	52.8
QAU50737.1\|387775_388015_-	hypothetical protein	NA	NA	NA	NA
QAU50738.1\|388011_389205_-\|transposase	IS91 family transposase	NA	NA	NA	NA
QAU50739.1\|389214_390117_-\|integrase	integrase	S5W9T9	Leptospira_phage	2.9e-33	35.1
QAU50740.1\|390205_390367_-	hypothetical protein	NA	NA	NA	NA
QAU50741.1\|390503_390815_+	hypothetical protein	A0A0C5AJ30	Paenibacillus_phage	2.0e-05	38.0
QAU50742.1\|391077_392382_+\|transposase	IS110 family transposase	Q9JMN8	Wolbachia_phage	4.4e-115	49.6
QAU50743.1\|392415_393072_+\|transposase	IS3 family transposase	A0A1B3AZE5	Gordonia_phage	3.4e-23	35.5
QAU50744.1\|395026_396298_-	hypothetical protein	NA	NA	NA	NA
QAU50745.1\|396396_397077_-	hypothetical protein	NA	NA	NA	NA
QAU50746.1\|397323_397968_+	hypothetical protein	K4I413	Acidithiobacillus_phage	9.7e-47	44.7
QAU51225.1\|397982_398744_+\|transposase	transposase	K4HZD4	Acidithiobacillus_phage	1.7e-66	53.3
QAU50747.1\|399119_399473_+	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
QAU50748.1\|401072_402311_+\|integrase	integrase	A0A0K2CP59	Brevibacillus_phage	8.4e-07	30.2
QAU51226.1\|403229_404231_+\|integrase	integrase	A0A2K9VH72	Gordonia_phage	1.6e-11	26.9
QAU50749.1\|405136_406324_-	crotonyl-CoA carboxylase/reductase	NA	NA	NA	NA
QAU50750.1\|406931_408473_-	long-chain fatty acid--CoA ligase	NA	NA	NA	NA
QAU51227.1\|410190_411582_+	MATE family efflux transporter	NA	NA	NA	NA
QAU50751.1\|411787_411979_+	hypothetical protein	NA	NA	NA	NA
QAU50752.1\|412759_413080_+	hypothetical protein	NA	NA	NA	NA
QAU50753.1\|414364_415393_-\|transposase	IS110 family transposase	NA	NA	NA	NA
QAU50754.1\|415521_416274_-	hypothetical protein	NA	NA	NA	NA
QAU50755.1\|417564_419037_-\|transposase	IS21 family transposase	NA	NA	NA	NA
QAU51228.1\|419318_420347_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.9e-20	30.4
QAU50756.1\|421322_421658_-	IS66 family insertion sequence hypothetical protein	NA	NA	NA	NA
QAU50757.1\|422455_423181_+	hypothetical protein	NA	NA	NA	NA
QAU51229.1\|423626_424907_+	diaminobutyrate--2-oxoglutarate transaminase	A0A1V0SKB7	Klosneuvirus	8.1e-21	24.1
QAU50758.1\|425051_425243_+	hypothetical protein	NA	NA	NA	NA
QAU50759.1\|425487_426573_-	uridylate kinase	NA	NA	NA	NA
QAU50760.1\|427835_429440_+	RNA polymerase sigma-54 factor	NA	NA	NA	NA
QAU51230.1\|431958_432165_+	cold-shock protein	Q9AZD3	Lactococcus_phage	4.5e-06	43.1
QAU50761.1\|432271_432472_+	hypothetical protein	NA	NA	NA	NA
QAU50762.1\|432871_433720_-	hypothetical protein	A0A059NT77	Lactococcus_phage	1.2e-31	34.5
QAU50763.1\|433680_435153_-\|transposase	IS21 family transposase	NA	NA	NA	NA
QAU51231.1\|435434_436463_-\|transposase	IS110 family transposase	A0A1S7J231	Thermus_phage	1.9e-20	30.4
QAU50764.1\|441188_441500_+	hypothetical protein	NA	NA	NA	NA
435148:436552	attR	NA	NA	NA	NA
QAU50765.1\|441631_442546_+	hypothetical protein	NA	NA	NA	NA
QAU50766.1\|442763_443690_+	hypothetical protein	NA	NA	NA	NA
QAU50767.1\|444641_444845_-	hypothetical protein	NA	NA	NA	NA
QAU50768.1\|445131_445845_+	hypothetical protein	NA	NA	NA	NA
QAU50769.1\|446152_446533_-	response regulator	NA	NA	NA	NA
QAU51232.1\|446589_447249_-	DNA-binding response regulator	NA	NA	NA	NA
QAU50770.1\|448835_450224_-\|transposase	IS5/IS1182 family transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030053

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP030054

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection