CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP035386	Enterobacter hormaechei strain S11_16 plasmid unnamed1, complete sequence	0 crisprs	NA	2
CP035389	Enterobacter hormaechei strain S11_16 plasmid unnamed4, complete sequence	0 crisprs	NA	0
CP035387	Enterobacter hormaechei strain S11_16 plasmid unnamed2, complete sequence	0 crisprs	NA	1
CP035385	Enterobacter hormaechei strain S11_16 chromosome, complete genome	1 crisprs	DEDDh,csa3,WYL,DinG,cas3	10
CP035388	Enterobacter hormaechei strain S11_16 plasmid unnamed3, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1708 : 61164

Escherichia_phage(16.67%)

transposase,integrase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAV63870.1\|1708_2449_-\|integrase	site-specific integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
QAV63871.1\|2812_3736_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	1.1e-176	99.7
QAV63872.1\|4025_4229_+	hemolysin expression modulator Hha	NA	NA	NA	NA
QAV63975.1\|5049_5250_+	hypothetical protein	NA	NA	NA	NA
QAV63873.1\|5694_5961_+	DUF1778 domain-containing protein	NA	NA	NA	NA
QAV63874.1\|5948_6431_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
QAV63875.1\|6642_7986_+\|transposase	ISNCY family transposase	NA	NA	NA	NA
QAV63876.1\|8056_8875_-	hypothetical protein	NA	NA	NA	NA
QAV63877.1\|8883_9456_-	recombinase family protein	Q1MVP4	Enterobacteria_phage	7.8e-40	47.2
QAV63878.1\|9846_10967_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
QAV63879.1\|10877_11066_+	hypothetical protein	NA	NA	NA	NA
QAV63880.1\|11080_13078_+	BCCT family transporter	A0A2I7QNT1	Vibrio_phage	2.0e-21	25.9
QAV63881.1\|13141_14434_+	DUF2254 domain-containing protein	NA	NA	NA	NA
QAV63882.1\|14474_15455_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.8e-185	99.1
QAV63883.1\|22941_23421_-	EAL domain-containing protein	NA	NA	NA	NA
QAV63884.1\|23465_24446_+\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	3.0e-185	99.1
QAV63885.1\|24768_25773_-\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
QAV63886.1\|26212_26965_-	alpha/beta hydrolase	NA	NA	NA	NA
QAV63887.1\|27568_28342_-	SDR family oxidoreductase	NA	NA	NA	NA
QAV63888.1\|28407_29109_-	DsbA family oxidoreductase	NA	NA	NA	NA
QAV63889.1\|29174_30281_-	alkene reductase	NA	NA	NA	NA
QAV63890.1\|30493_30823_+	thioredoxin	V9SJ74	Achromobacter_phage	7.4e-11	33.7
QAV63891.1\|30852_31191_-	carboxymuconolactone decarboxylase family protein	NA	NA	NA	NA
QAV63892.1\|31195_31777_-	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QAV63893.1\|31918_32476_-	OsmC family peroxiredoxin	NA	NA	NA	NA
QAV63894.1\|32719_34747_+	SAM-dependent DNA methyltransferase	A0A220A2U5	Liberibacter_phage	2.1e-26	26.6
QAV63895.1\|34743_36078_+	restriction endonuclease subunit S	A0A1V0SLK8	Klosneuvirus	3.5e-06	40.9
QAV63896.1\|36078_39336_+	type I restriction endonuclease subunit R	NA	NA	NA	NA
QAV63897.1\|39340_40609_+\|transposase	ISL3 family transposase	Q6V7R1	Burkholderia_virus	5.2e-60	34.7
QAV63898.1\|40840_41425_-	recombinase family protein	A0A219YA40	Aeromonas_phage	2.6e-22	36.1
QAV63899.1\|43125_46023_-\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	9.3e-182	37.8
QAV63900.1\|46117_46723_+	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
QAV63901.1\|47382_48564_+	Na+/H+ antiporter NhaA	A0A2H4J5W3	uncultured_Caudovirales_phage	1.9e-120	64.2
QAV63902.1\|48990_49305_-	hypothetical protein	NA	NA	NA	NA
QAV63976.1\|49559_49916_-	cupin domain-containing protein	NA	NA	NA	NA
QAV63903.1\|49905_50307_-	DUF86 domain-containing protein	NA	NA	NA	NA
QAV63904.1\|50303_50594_-	nucleotidyltransferase	NA	NA	NA	NA
QAV63905.1\|50668_53635_+\|transposase	Tn3-like element ISPa38 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.2
QAV63906.1\|53713_54718_+\|transposase	IS110-like element IS4321 family transposase	NA	NA	NA	NA
QAV63907.1\|56519_56861_-	hypothetical protein	NA	NA	NA	NA
QAV63908.1\|57858_58734_-	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
QAV63977.1\|58714_58792_-	RepA leader peptide Tap	NA	NA	NA	NA
QAV63909.1\|59010_59289_-	replication regulatory protein RepA	NA	NA	NA	NA
QAV63910.1\|59440_59986_-	phospholipase D family protein	A0A1B2LRT6	Wolbachia_phage	1.0e-20	33.1
QAV63911.1\|60043_61164_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8

DBSCAN-SWA_2

103418 : 108954

Pectobacterium_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAV63958.1\|103418_103673_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.1e-13	50.0
QAV63959.1\|103865_104057_-	hypothetical protein	NA	NA	NA	NA
QAV63960.1\|104099_104606_-	antirestriction protein ArdA	A0A1I9S7Y0	Rhodococcus_phage	3.7e-09	31.8
QAV63961.1\|105004_105784_-	hypothetical protein	NA	NA	NA	NA
QAV63962.1\|105837_106257_-	DUF1380 domain-containing protein	NA	NA	NA	NA
QAV63963.1\|106240_106489_-	hypothetical protein	NA	NA	NA	NA
QAV63964.1\|106488_107166_-	DNA methylase	A0A2K9VH43	Faecalibacterium_phage	1.6e-28	37.5
QAV63965.1\|107525_108197_+	DNA breaking-rejoining protein	A0A2H4J5W2	uncultured_Caudovirales_phage	3.3e-82	60.8
QAV63966.1\|108376_108799_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	2.4e-30	51.5
QAV63967.1\|108798_108954_+	DNA repair protein	I6RSM4	Salmonella_phage	3.0e-15	74.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP035387

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

4060 : 43930

Escherichia_phage(20.0%)

integrase,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAV63982.1\|4060_4765_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAV63983.1\|5265_6126_+	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
QAV63984.1\|6384_7266_+	carbapenem-hydrolyzing class A beta-lactamase KPC-2	A0A1B0VBP7	Salmonella_phage	2.2e-73	52.2
QAV63985.1\|8225_8831_-	DNA resolvase	A0A1S5Y2X8	uncultured_archaeal_virus	5.5e-20	35.3
QAV63986.1\|8925_11823_+\|transposase	Tn3-like element Tn5403 family transposase	A0A1B0V7H9	Salmonella_phage	1.1e-182	37.9
QAV63987.1\|12780_12960_-	hypothetical protein	NA	NA	NA	NA
QAV63988.1\|12959_13955_-	conjugal transfer protein TraG	NA	NA	NA	NA
QAV63989.1\|13996_15157_-	TrbI/VirB10 family protein	NA	NA	NA	NA
QAV64042.1\|15156_15978_-	conjugal transfer protein TraO	NA	NA	NA	NA
QAV63990.1\|16051_16750_-	type IV secretion system protein	NA	NA	NA	NA
QAV63991.1\|16739_16886_-	conjugal transfer protein TraN	NA	NA	NA	NA
QAV63992.1\|16968_18009_-	type IV secretion system protein	NA	NA	NA	NA
QAV63993.1\|18024_18252_-	entry exclusion protein	NA	NA	NA	NA
QAV63994.1\|18259_18973_-	type IV secretion system protein	NA	NA	NA	NA
QAV63995.1\|18990_21591_-	VirB4 family type IV secretion/conjugal transfer ATPase	NA	NA	NA	NA
QAV63996.1\|21590_21908_-	type IV secretion system protein VirB3	NA	NA	NA	NA
QAV63997.1\|21958_22252_-	conjugal transfer protein TraM	NA	NA	NA	NA
QAV63998.1\|22261_22543_-	transcriptional regulator	NA	NA	NA	NA
QAV63999.1\|22551_23289_-	traL protein	NA	NA	NA	NA
QAV64000.1\|23352_23703_+	KorB	NA	NA	NA	NA
QAV64001.1\|23718_24063_+	hypothetical protein	NA	NA	NA	NA
QAV64002.1\|24059_24374_+	IncN plasmid KikA protein	NA	NA	NA	NA
QAV64003.1\|24409_24721_+	hypothetical protein	NA	NA	NA	NA
QAV64004.1\|25078_26002_-\|transposase	IS5 family transposase	Q1MVF0	Enterobacteria_phage	6.2e-172	96.7
QAV64005.1\|26097_26484_+	restriction endonuclease	NA	NA	NA	NA
QAV64006.1\|26488_26695_+	hypothetical protein	NA	NA	NA	NA
QAV64007.1\|27076_28510_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	7.0e-106	51.2
QAV64008.1\|28543_29752_-	restriction endonuclease	E5E3X4	Burkholderia_phage	1.2e-34	42.5
QAV64009.1\|29997_30567_+	recombinase family protein	E5FFF9	Burkholderia_phage	9.8e-35	42.6
QAV64043.1\|30712_31024_-	hypothetical protein	NA	NA	NA	NA
QAV64010.1\|31878_32583_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAV64044.1\|32891_33536_-	quinolone resistance pentapeptide repeat protein QnrB5	NA	NA	NA	NA
QAV64045.1\|34024_34864_+	sulfonamide-resistant dihydropteroate synthase Sul1	A0A0B5J4J5	Pandoravirus	5.0e-11	27.2
QAV64011.1\|35268_36810_+\|transposase	IS91 family transposase	NA	NA	NA	NA
QAV64012.1\|37075_37576_+	hypothetical protein	A0A1V0SB21	Catovirus	3.3e-10	31.7
QAV64013.1\|37575_38145_+	trimethoprim-resistant dihydrofolate reductase DfrA19	A0A1V0SD48	Indivirus	3.5e-08	27.2
QAV64046.1\|38527_38779_-\|transposase	transposase	NA	NA	NA	NA
QAV64014.1\|38747_39761_-\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
QAV64015.1\|39918_40722_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	NA	NA	NA	NA
QAV64016.1\|40721_41558_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
QAV64017.1\|41738_42530_+	sprT domain-containing protein	NA	NA	NA	NA
QAV64018.1\|42544_42886_-	ArdK family transcriptional regulator	NA	NA	NA	NA
QAV64019.1\|43225_43930_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP035385

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CRISPR-Cas detection and classification

Crispr_ID: CP035385_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035385_1

1512292-1512405

Orphan

Consensus_repeat	Method
GCCGGGTAAACGCAGTGTCACCCGGCAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035385_1

>merge|CP035385|1|1512292-1512405|CRISPRCasFinder
GCCGGGTAAACGCAGTGTCACCCGGCAAAAAGCGCGGTGGCGCTAACGCTTACCGGGCCTACGAAGAGCCAACATGTACAAAGTAGGCCGGGTAAACGCAGTGCCACCCGGCAA

>CP035385|1|1|1512292-1512405|CRISPRCasFinder
GCCGGGTAAACGCAGTGTCACCCGGCAA	AAAGCGCGGTGGCGCTAACGCTTACCGGGCCTACGAAGAGCCAACATGTACAAAGTAG
GCCGGGTAAACGCAGTGCCACCCGGCAA

Protein	Signature genes	Signature genes Name	Protein_function
CP035385.1\|QAV60633.1\|1500455_1501253_+\|prepilin-peptidase	unknown	unknown	gnl\|CDD\|224900
CP035385.1\|QAV60648.1\|1521151_1523092_+\|MacB-family-efflux-pump-subunit	unknown	unknown	gnl\|CDD\|182528
CP035385.1\|QAV60642.1\|1513406_1515059_-\|hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
CP035385.1\|QAV60639.1\|1509430_1510432_-\|low-specificity-L-threonine-aldolase	unknown	unknown	gnl\|CDD\|236710
CP035385.1\|QAV60646.1\|1518923_1519880_-\|DUF535-domain-containing-protein	unknown	unknown	gnl\|CDD\|377343
CP035385.1\|QAV60643.1\|1515203_1516103_-\|lysine-exporter-LysO-family-protein	unknown	unknown	gnl\|CDD\|225287
CP035385.1\|QAV60647.1\|1520039_1521155_+\|macrolide-transporter-subunit-MacA	unknown	unknown	gnl\|CDD\|183211
CP035385.1\|QAV60637.1\|1506877_1507891_-\|NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|223528
CP035385.1\|QAV60638.1\|1507983_1509420_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|187556
CP035385.1\|QAV60632.1\|1499973_1500459_+\|type-II-secretion-system-protein-M	unknown	unknown	gnl\|CDD\|377391
CP035385.1\|QAV60631.1\|1498843_1499977_+\|type-II-secretion-system-protein-GspL	unknown	unknown	gnl\|CDD\|273768
CP035385.1\|QAV60640.1\|1510470_1512189_-\|ubiquinone-dependent-pyruvate-dehydrogenase	unknown	unknown	gnl\|CDD\|181661
CP035385.1\|QAV60635.1\|1504331_1504772_+\|type-III-secretion-system-invasion-protein-IagB	unknown	unknown	gnl\|CDD\|185228
CP035385.1\|QAV60636.1\|1504906_1506733_+\|PKD-domain-containing-protein	unknown	unknown	gnl\|CDD\|381595
CP035385.1\|QAV60634.1\|1501506_1504230_+\|glycoside-hydrolase	unknown	unknown	gnl\|CDD\|214753
CP035385.1\|QAV60644.1\|1516281_1516977_-\|aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
CP035385.1\|QAV60649.1\|1523162_1523384_-\|cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|184960
CP035385.1\|QAV60641.1\|1512427_1513396_-\|NADH-oxidoreductase	unknown	unknown	gnl\|CDD\|236735
CP035385.1\|QAV60650.1\|1523651_1523972_+\|ATP-dependent-Clp-protease-adapter-ClpS	unknown	unknown	gnl\|CDD\|178809
CP035385.1\|QAV60645.1\|1517268_1518927_+\|ATP-dependent-endonuclease	unknown	unknown	gnl\|CDD\|226121

Protein	Function_ID	Function_description	E-value
CP035385.1\|QAV60633.1\|1500455_1501253_+\|prepilin-peptidase	gnl\|CDD\|224900	COG1989, PulO, Type II secretory pathway, prepilin signal peptidase PulO and related peptidases [Cell motility and secretion / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion].	2.76733e-42
CP035385.1\|QAV60648.1\|1521151_1523092_+\|MacB-family-efflux-pump-subunit	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP035385.1\|QAV60642.1\|1513406_1515059_-\|hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
CP035385.1\|QAV60639.1\|1509430_1510432_-\|low-specificity-L-threonine-aldolase	gnl\|CDD\|236710	PRK10534, PRK10534, L-threonine aldolase; Provisional.	0
CP035385.1\|QAV60646.1\|1518923_1519880_-\|DUF535-domain-containing-protein	gnl\|CDD\|377343	pfam04393, DUF535, Protein of unknown function (DUF535). Family member Shigella flexneri VirK is a virulence protein required for the expression, or correct membrane localization of IcsA (VirG) on the bacterial cell surface,. This family also includes Pasteurella haemolytica lapB, which is thought to be membrane-associated.	3.00792e-124
CP035385.1\|QAV60643.1\|1515203_1516103_-\|lysine-exporter-LysO-family-protein	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	2.90935e-117
CP035385.1\|QAV60647.1\|1520039_1521155_+\|macrolide-transporter-subunit-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP035385.1\|QAV60637.1\|1506877_1507891_-\|NAD(P)-dependent-oxidoreductase	gnl\|CDD\|223528	COG0451, WcaG, Nucleoside-diphosphate-sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism].	1.04343e-52
CP035385.1\|QAV60638.1\|1507983_1509420_-\|SDR-family-oxidoreductase	gnl\|CDD\|187556	cd05245, SDR_a2, atypical (a) SDRs, subgroup 2. This subgroup contains atypical SDRs, one member is identified as Escherichia coli protein ybjT, function unknown. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif consensus that generally matches the extended SDRs, TGXXGXXG, but lacks the characteristic active site residues of the SDRs. This subgroup has basic residues (HXXXR) in place of the active site motif YXXXK, these may have a catalytic role. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	1.4315e-140
CP035385.1\|QAV60632.1\|1499973_1500459_+\|type-II-secretion-system-protein-M	gnl\|CDD\|377391	pfam04612, T2SSM, Type II secretion system (T2SS), protein M. This family of membrane proteins consists of Type II secretion system protein M sequences from several Gram-negative (diderm) bacteria. The precise function of these proteins is unknown, though in Vibrio cholerae, the T2SM (EpsM) protein interacts with the T2SL (EpsL) protein, and also forms homodimers.	1.47125e-27
CP035385.1\|QAV60631.1\|1498843_1499977_+\|type-II-secretion-system-protein-GspL	gnl\|CDD\|273768	TIGR01709, Type_II_secretion_system_protein_L, type II secretion system protein L. This model represents GspL, protein L of the main terminal branch of the general secretion pathway, also called type II secretion. It transports folded proteins across the bacterial outer membrane and is widely distributed in Gram-negative pathogens. [Protein fate, Protein and peptide secretion and trafficking].	1.59907e-40
CP035385.1\|QAV60640.1\|1510470_1512189_-\|ubiquinone-dependent-pyruvate-dehydrogenase	gnl\|CDD\|181661	PRK09124, PRK09124, ubiquinone-dependent pyruvate dehydrogenase.	0
CP035385.1\|QAV60635.1\|1504331_1504772_+\|type-III-secretion-system-invasion-protein-IagB	gnl\|CDD\|185228	PRK15328, PRK15328, type III secretion system invasion protein IagB.	1.24199e-87
CP035385.1\|QAV60636.1\|1504906_1506733_+\|PKD-domain-containing-protein	gnl\|CDD\|381595	cd00325, chitinase_GH19, Glycoside hydrolase family 19, chitinase domain. Chitinases are enzymes that catalyze the hydrolysis of the beta-1,4-N-acetyl-D-glucosamine linkages in chitin polymers. Glycoside hydrolase family 19 chitinases are found primarily in plants (classes I, III, and IV), but some are found in bacteria. Class I and II chitinases are similar in their catalytic domains. Class I chitinases have an N-terminal cysteine-rich, chitin-binding domain which is separated from the catalytic domain by a proline and glycine-rich hinge region. Class II chitinases lack both the chitin-binding domain and the hinge region. Class IV chitinases are similar to class I chitinases, but they are smaller in size due to certain deletions. Despite lacking any significant sequence homology with lysozymes, structural analysis reveals that family 19 chitinases, together with family 46 chitosanases, are similar to several lysozymes including those from T4-phage and from goose. The structures reveal that the different enzyme groups arose from a common ancestor glycohydrolase antecedent to the prokaryotic/eukaryotic divergence.	3.50124e-72
CP035385.1\|QAV60634.1\|1501506_1504230_+\|glycoside-hydrolase	gnl\|CDD\|214753	smart00636, Glyco_18, Glyco_18 domain.	6.74379e-123
CP035385.1\|QAV60644.1\|1516281_1516977_-\|aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	1.82782e-146
CP035385.1\|QAV60649.1\|1523162_1523384_-\|cold-shock-like-protein-CspD	gnl\|CDD\|184960	PRK14998, PRK14998, cold shock-like protein CspD; Provisional.	1.04122e-47
CP035385.1\|QAV60641.1\|1512427_1513396_-\|NADH-oxidoreductase	gnl\|CDD\|236735	PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional.	0
CP035385.1\|QAV60650.1\|1523651_1523972_+\|ATP-dependent-Clp-protease-adapter-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	9.90991e-48
CP035385.1\|QAV60645.1\|1517268_1518927_+\|ATP-dependent-endonuclease	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0

>CP035385.1|QAV60640.1|1510470_1512189_-|ubiquinone-dependent-pyruvate-dehydrogenase
MKQTVAAYIAKTLEQAGVKRIWGVTGDSLNGLSDSLNKMKTIEWMPTRHEEVAAFAAGAEAQLTGELAVCAGSCGPGNLHLINGLFDCHRNHVPVLAIAAHIPSSEIGSGYFQETHPQELFRECSHYCELVSSPEQIPQVLAIAMRKAILNRGVSVVVLPGDVALKAAPETATTHWYSAPQPTITPADEELKKLAQLLRYSSNIALMCGSGCAGAHKELVEFAAKLKAPVVHALRGKEHVEYDNPYDVGMTGLIGFSSGFHTMMNADTLILLGTQFPYRAFYPTDAKIIQIDINPGSIGAHSKVDMALIGDIKSTLAALLPLLEEKTDRKFLDKALSDYRDARKGLDDLAKPSEKAIHPQYLAQQISHFADDDAIFTCDVGTPTVWAARYLKMNGKRRLLGSFNHGSMANAMPQALGAKATAPERQVVAMCGDGGFSMLMGDFLSVAQMKLPLKIVVFNNSVLGFVAMEMKAGGYLTDGTELHDTNFARIAEACGITGIRVEKASEVDEALQRAFSIDGPVLVDVVVAKEELAIPPQIKLEQAKGFSLYMLRAIISGRGDEVIELAKTNWLR
>CP035385.1|QAV60639.1|1509430_1510432_-|low-specificity-L-threonine-aldolase
MIDLRSDTVTRPGRAMLEEMMAAPVGDDVYGDDPTVNELQRYAAELSGKEAALFLPTGTQANLVALLSHCERGEEYIVGQGAHNYLYEAGGAAVLGSIQPQPIDAAPDGTLPLDKVAAKIKADDIHFARTKLLSLENTHNGKVLPREYLKAAWDFTRERKLGLHVDGARIFNAVVEYGCELKEITQYCDSFTICLSKGLGTPVGSLLVGSADYIRRANRWRKMTGGGMRQAGILAAAGLYALKNNVSRLKDDHDNAAWMAAQLREIGADVMRHDTNMLFVRVGDEHAAALGEFMKARGVLINASPVVRLVMHLDVNREQLTEVVKHWQAFLQR
>CP035385.1|QAV60638.1|1507983_1509420_-|SDR-family-oxidoreductase
MPQRILVLGASGYIGQHLTTALSQQGHQVLAVARNTERLQKLHLPGVTCHNVDLNWPKALPALLEGVDTLYYLVHSMGEGGDFIAHERQVAMNVRDTLLQTPVKQVIFLSSLQAPENEQSDHLRARQLTAETLRSARIPVTELRAGIIVGAGSAAFEVMRDMVYNLPVLTPPRWVRSRTTPIALENLLHYLVALLDHPAAAHRVLEAAGPEVLSYQAQFEHFMRVSGRRRWLVPVPFPTRWISVWFLNVITSVPPTTAKALIQGLKHDLLADDRELRALIPQELIPFDDAVRNTLKEEEKLVNSSDWGYDAQAFARWRPEYGYYPKQAGCTVKTTASLSALWDVVNQIGGKERYFFGNILWQTRGTLDLLVGHRLAKGRPAAPYLNVGDTVDSWKVIIVEPEKQLALLFGMKAPGLGRLCFTLKDKGDHRELDVRAWWHPHGMPGLFYWLLMIPAHLFIFRGMAKRIAQLAEEKRESN
>CP035385.1|QAV60637.1|1506877_1507891_-|NAD(P)-dependent-oxidoreductase
MKVLVTGATSGLGRNAVEFLRNKGISVRATGRNEAMGKLLQKMGAEFVHADLTELVSSQAKVMLAGIDTLWHCSSFTSPWGTQEAFDLANVRATRRLGEWAVAWGVRNFIHISSPSLYFDYHHHRDIQEDFRPARFACEFARSKAAGEEVIDLLAQSNPHTRFTVLRPQSLFGPHDKVFIPRLAQMMHHYGSVLLPRGGDALVDMTYYENAVHAMWLASQPECDKLVSGRAYNITNGEPCTLRSIVQRLIDELKIDCRIRSVPYPMLDMIARSMERFGSKSAKEPALTHYGVSKLNFDFTLDISRAENELGYKPIISLDEGIVRTAAWLRDHGKLHR
>CP035385.1|QAV60636.1|1504906_1506733_+|PKD-domain-containing-protein
MNKRTLLSVLVAGACVAPFMAQAASLQATTGEPYTMKASDLAKKEHELTNFPLMASVKETIQTLDNAQVELIEPGRAANPDNVKRVEGIVKASDWEYLFPLRAQAYTYSNFLKAVGKFPALCKTYNDGRDSDAICRKELATMFAHFAQETGGHESWRPEAEWRQALVHVREMGWSEGQKGGYNGECNPDVWQGQTWPCGKDKDGDFLSYFGRGAKQLSYNYNYGPFSEAMYGDVRTLLDKPELVADTWLNLASAIFFFAYPQPPKPSMLQVIDGTWQPNDHDKANGLVPGFGVTTQIINGGVECGGPTEIAQSQNRIKYYKEFANYLKVPVPANEVLGCANMKQFDEGGAGALKIYWEQDWGWSADTPDGKTYSCQLVGYQTPFSAFKEGDYSKCVQKFYNVNIVNDDSSSVTPDETPVTPTPTPSEDVTPAPTPAPVPDETPVEPVAVNHAPVAQIAGPIGAVEAGAQVSLSAEGSTDADGNKLTYTWRSQDGQTVTGEDKAVVTFKAPESATAQQYEVSLTVSDGELSSTTSYLLNVKAKAATPSGEDTSYPAWSANSKYNAGDIVNNHGKLFQCKPFPYSGWCNSAPTYYEPGAGLAWAEAWTAL
>CP035385.1|QAV60635.1|1504331_1504772_+|type-III-secretion-system-invasion-protein-IagB
MKKLILLLLIISQGALANCWDKAARYYHVDPYLLYAIANVESGMNPYAVGKNRDGTRDVGLMQINSSHFTALESRGIDEYRLMTEPCTSIMVGASILSGMIRVYGYNWEAVGAYNAGLKKENYPQRMKYAHKVWAKYQQLKLAARD
>CP035385.1|QAV60634.1|1501506_1504230_+|glycoside-hydrolase
MKFMKPKYLALFIAAATSSAFAAAPGTPSITSGNDKFALVEVDQAAQDYNNLIKVHKEGVDVKVEWNVWSGDAPTSAKVLLDGKTVWTGAGSAAGSATFKVKKGGRYQEQVELCNDSGCTKSASKLIIVADTDGSHLLPLNTPLLENNKAFAQHTDKVVGAYFPEWGVYDRNFSADKIPVANINHLLYGFIPICGGDGINDSAKSSGALESLKRACAGRQDYTVAIHDPWAALQKPQKGVSNWDDPYKGNYGQLMAMKKAHPDLKILPSIGGWTLSDPFYQMDNKVLRDRFVASVKDFLTTWKVFDGVDIDWEFPGGGGENAKLGNPQTDKATYTALMHDLRQMLNELSAETGRTYELTTAIGAGKDKIEDVDYNTTQQYLDHIFLMSYDFYGAWSNTDLGHQTALYGASWKPDTNYTTDNAVKAMLEQGVKPGKIVVGAGMYGRGWTGVHGYTGDNPFTGTATGPIKGTWENGIVDYRQIVNQMLGKPGWEYKYDEAAEAPYVFNKSTGELVTYDNARSVMAKGKYVLNKNLGGLFAWSIESDNGDILNAMNESLLGGSSIPDLPVETNHAPVASAADQNVTGPATVTLDGSASSDQDDDALTYKWTQVSGPSVTIANSTKAKASFSVPAVTSDQNLVFRLTVTDAKGLSNAVDVQVVNKAPKANQAPVINAMEAVTVQSGEAISLHAQASDPDGDALTYSWSVPADMNATGTDSANVRITAPEVHNTSSYTLSVIVTDGKTSVQSDVQVTVEPKPADEVTPPADDVTPPVDDVTPPADDVTPPADDVTPPADDTTGSCDAPVDANASKYAAWDASKIYNNGDTVSFDHLVWKAKYWTQGNQPGFGMDAWELVSNVKMNWRSDLVYNGGDTTTYEGNVYRAKWWTRGDNPANSDVWVKEGASTDCK
>CP035385.1|QAV60633.1|1500455_1501253_+|prepilin-peptidase
MNTFTLMREACPLGFPMMSAILGGIMGSFLGVVAERVPGMVMDEEGSGNLLFPASHCPVCQHTLAAWENIPLLSWLLLRGRCHQCGSAIPLRLFLVELFSALFFGITAWCMPDVQALFSLWLLAAFLLPLAMIDWQHQLLPDCLTQPLLWAGLVLHAIDHTLPLRDALFGAVAGYLSLWLLYWAFRLIAGREGLGYGDFKLLAALGAWCGWQALPSIELAAALSGIVGYFAVNNLNKNNLTISFGPYLAFSGIVVFISQQFAFTF
>CP035385.1|QAV60632.1|1499973_1500459_+|type-II-secretion-system-protein-M
MKERIAQLKSRYQNYSAREKIILKICAVAIVGAAVYYTGVIPLDNMIQNSKSTLKRQKETLNWMRSEIDKNHLQVQLVKTNNPRTVVENSAHEINLSLTDVRQEGQTLSFVVNRVNVYELKSWLREINQTSGVTLQKINLTPVDHLSDVKAQVQLTWSKSA
>CP035385.1|QAV60631.1|1498843_1499977_+|type-II-secretion-system-protein-GspL
MKQVLFVRPDSREGGKIMCCESGSERVEVLDSLEMLAEHPLATRVCLLLPASDMIFRHFTLPKKVASQAMAFSWMAEETLIGDVDNLHWTVLYKKGADVDAVAIDADRLRAALTRCHEAGLNVIQALPDAWLLPVAAGGSTLVAQDKGYWLRLSPHVAGEMEGTLLPLLMQKAGDGEVCCYGDAPADVHVDVQHAWQHPLVLIQPQWKTCRMNLLHGEFSLKAGHGQAAKSMKAAMIAAGLLSVGLLLGPRIAMAWMLVQQENRVQQEIVQVYQHHFPSMRQQTNIKYHFGQSLKKQSKGFFLQLEELEKARQSVPAMEIDLLEYDAQQNTLTLSVSAQSQPALQAFVNQTSENFDFTLQPVSTTEPYTAMIAGKHK
>CP035385.1|QAV60641.1|1512427_1513396_-|NADH-oxidoreductase
MTMPTSQCPWRMQVHHIQQETPDVWTLSLLCHDYYPYRAGQYALVSVRNSADTLRAYTISSTPGVSEYITLTVRRIDDGAGSRWLTRDVKRGDYIWLSDAQGEFTCDDKKEDKFLLLAAGCGVTPIMSMRRWLAKYRPQADVQVIFSVRSPEDVIFAEEWRNYPVTLVAEHNATHGFVAGRLSREMLQSVPDIADRTVMTCGPAPYMEIVEKEVNALGVTRFFKEQFFTPVAAAATSGMKFTRLQPAQTFFGRVGTTLLEALESNNVPVAAACRAGVCGCCKTKVVSGEYTVTSTMTLTDAEIAEGYVLACSCHPQGDLVLA
>CP035385.1|QAV60642.1|1513406_1515059_-|hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIAALQGLSAWAFKAREYGLVDHYVDSFAPRAFFSTLTNVNFDSPRIVGYAREAIALREALKAQCLNADASARVDNPMAELQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPSDMNALLECSMEIGQMNFKVMSILDAGETSTYGHPTPTQVNVKATEGKCILISGHDLKDLYNLLKQTEGTGVNVYTHGEMLPAHGYPELRKFKHLIGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVSHLEGDDFGPVIAQAQQMAGFPYSEIPHLITVGFGRETLLGAADSLIDLVSREKLRHIFLIGGCDGARGERNYFTDFATRVPEDCLILTLACGKYRFNKLDFGNIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVTNIVTGPTAPGFLTPDLLAILNEKFGLRSVTNVEDDMKQLLSA
>CP035385.1|QAV60643.1|1515203_1516103_-|lysine-exporter-LysO-family-protein
MFSGLLIILLPLIVGYLIPLRHESALKLINRFLSWIVYVILFFMGISLAFLDNLATNLLSILHYSAVTVVVILLCNIAALFWLERTIPWKNHHHQEKLPSRIAMALESLKLCGVVVLGFLLGLTGWAFLQHATEASEYTLIFLLFLIGIQLRNNGMTLKQIVLNRRGMMVAVIVVASSMAGGVINAFILDLPLKTSLAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLVRRSRSTALGLCGATSMDFTLPVLQRSGGLEMVPAAIVHGFILSLLVPILMAFFSA
>CP035385.1|QAV60644.1|1516281_1516977_-|aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAAFPELGIGFVGVALAFGLTVLTMAFAVGHISGGHFNPAVTLGLWAGGRFPAKDIIGYIIAQVIGGIIAAAVLYVIASGKAGFDAAASGFASNGFGEHSPGGYSMLSAIVIEIVLTAGFLLVIHGATDKYAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWLFWVMPIIGGILGGVLYRTLLEKRD
>CP035385.1|QAV60645.1|1517268_1518927_+|ATP-dependent-endonuclease
MLLERVEIVGFRGINRLSLQLEQNNVLIGENAWGKSSLLDALTLLLSPEENLYHFVHDDFWFPPGDVNGREKHLHIILTFRESEPGRHRVRRFRPMSPCWVPCEDGFQRIFYRLEGEMAQNDGVLTLREFLDEKGNPIPLDNIDELARHLIRLSPVLRLRDARFMRRIRNGTVPNMPEVEVTARELDFLARELVSRPQNLTDGQIRQGLSAMVQLLEHYFSEQGTGQARHRLMRRRSHDEQRSWRYLDIINRMIDRPSGRTHRVILLGLFSTLLQAKGTVRLDRDARPLLLVEDPETRLHPIMLSVAWHLLNLLPLQRVTTTNSGELLSLTPVEYVCRLVRESSRVTAYRLGPGGLNAEDGRRIAFHIRFNRASSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLIKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREEEREHLTTLPAMDMEHFMYRQGFDDVFHRVAMIPVDVPMNMRRVIAKAIHRSSKPDLAIEVATEAGRRGVESVPTLLRKMFSRVLWLARGRAD
>CP035385.1|QAV60646.1|1518923_1519880_-|DUF535-domain-containing-protein
MSSIVDTPYSTLSQPKSGWQLFKSLASGSLTPGLAWQNPAYRRKFMLRSLATPFTTARLLGNLAKQPRLMQILRVQPGLPCRLHRPWLTVNMGRQNTLDALDNHYQMMSRHLPASLLNGYLSSQGITLVTLTGKEEQQFSVRLSADAFLDKEGEATLTFCDHQNTVLAELTFTLCKYQGKSTLFIGGMQGAKAHVPHEHIQLATKACHGLFPKRLLVEAVMTLAGAFPVEQILAVSNATHIYRSWRYRKKKEGKLLADYDSFWRSLGGQQQENGNFALPLTMPRKPMEEIASKKRSEYRRRYILLDSLHQQVSQATAR
>CP035385.1|QAV60647.1|1520039_1521155_+|macrolide-transporter-subunit-MacA
MNLKGKRRKLFLLLAVVVLAGGFWLWKVLNAPVPQYQTLIVRPGELQQNVLATGKLDALRKVDVGAQVSGQLKTLSVEIGDKVKKGQLLGVIDPEQAQNQIREVEATLMELRAQRAQAQAERNLAQVTLSRQQALAKTQAISKQDLDTAATELAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTQIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPQTRYEGVLKDILPTPEKVNDAIFYYARFEVPNPQGVLRLDMTAQVHIQLTGVKNVLTVPLSALGESAGDNRYKVKVLRNGETREREVVIGARNDTDVVVVKGLEEGEEVVTSESLPGAAQ
>CP035385.1|QAV60648.1|1521151_1523092_+|MacB-family-efflux-pump-subunit
MTALLELNDIRRSYPSGDGPVEVLKGISLRVEAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGTDVSTLDGDALAKLRREHFGFIFQRYHLLSHLSAAQNVEVPAVYAGVERKKRLERAKALLTRLGLAERVDYQPSQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDQGHTVIIVTHDPQVAAQAERIIEIHDGELVSNPPPRQSRAAAAKEALPAATGWGQFSSGFREALTMAWLAMAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQLVLADIRAIGTNTIDVYPGKDFGDDEPQYQQALKYDDLAAIQKQPWVNSATPAVSQNLRLRYGNIDVAASANGVSGDYFNVYGMTFSEGATFNAEQLAGRAQVVVLDANSRRQLFPNKTNVVGEVILVGNMPATVIGVAEEKQSMFGSSKILRVWLPYTTISGRIMGQSWLNSITVRVKEGYDSGLAEQQLERLLTLRHGKKDFFTWNMDGLLKTAEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGAMGIALSMMIAFALQLFLPGWEIGFSPMAILTAFLCSTFTGILFGWLPARNAARLDPVDALARE
>CP035385.1|QAV60649.1|1523162_1523384_-|cold-shock-like-protein-CspD
MEMGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVRFDVHQGPKGNHASLIVPVEAEAVA
>CP035385.1|QAV60650.1|1523651_1523972_+|ATP-dependent-Clp-protease-adapter-ClpS
MGKTNDWLDFDQLAEDKVRDALKPPSMYKVMLMNDDYTPMEFVIDVLQKFFSYDVERATQLMLTVHYRGKAICGIFTAEVAETKVAMVNDYARENEHPLLCTLEKA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

890276 : 932518

uncultured_Caudovirales_phage(31.03%)

holin,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAV60083.1\|890276_891380_+	glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	1.0e-59	39.9
QAV60084.1\|891391_892645_+	glutamate-5-semialdehyde dehydrogenase	A0A1X9I5D4	Streptococcus_phage	5.2e-97	46.6
QAV60085.1\|892985_894158_+	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	4.5e-111	49.7
QAV60086.1\|894154_894343_-	AlpA family phage regulatory protein	NA	NA	NA	NA
QAV60087.1\|894339_895749_-	DEAD/DEAH box helicase	Q3LZN8	Bacteriophage	6.9e-215	74.5
QAV63724.1\|895875_896178_-	VRR-NUC domain-containing protein	B6SD64	Bacteriophage	1.5e-26	65.9
QAV60088.1\|896167_896389_-	ANR family transcriptional regulator	NA	NA	NA	NA
QAV63725.1\|896454_897213_-	DNA-binding protein	NA	NA	NA	NA
QAV60089.1\|897269_899333_-	DNA polymerase	Q775A3	Bordetella_phage	1.0e-275	68.3
QAV60090.1\|899355_899886_+	hypothetical protein	NA	NA	NA	NA
QAV60091.1\|899937_900486_-	DUF2815 family protein	Q775A5	Bordetella_phage	8.4e-68	66.5
QAV60092.1\|900500_901805_-	DUF2800 domain-containing protein	B6SCX9	Bacteriophage	1.4e-145	59.6
QAV60093.1\|901807_902728_-	hypothetical protein	NA	NA	NA	NA
QAV60094.1\|903324_903948_-	helix-turn-helix domain-containing protein	A0A1I9KG86	Aeromonas_phage	8.8e-37	44.8
QAV60095.1\|904068_904281_+	XRE family transcriptional regulator	A0A0R6PHL1	Moraxella_phage	2.1e-06	44.4
QAV60096.1\|904284_906453_+	replication protein	B6SD37	Bacteriophage	1.2e-173	72.6
QAV60097.1\|906761_907037_+	hypothetical protein	NA	NA	NA	NA
QAV60098.1\|907314_907752_+	hypothetical protein	NA	NA	NA	NA
QAV60099.1\|907764_907995_+	hypothetical protein	NA	NA	NA	NA
QAV60100.1\|907998_909624_+\|tail	phage tail protein	A0A2H4J3N6	uncultured_Caudovirales_phage	3.9e-169	58.7
QAV60101.1\|909620_909854_+	hypothetical protein	NA	NA	NA	NA
QAV60102.1\|909840_910677_+	hypothetical protein	A0A2H4JEQ5	uncultured_Caudovirales_phage	3.0e-48	44.6
QAV60103.1\|910895_911807_+	hypothetical protein	A0A2H4JC66	uncultured_Caudovirales_phage	9.2e-43	37.6
QAV60104.1\|911864_912428_+	hypothetical protein	A0A2H4JID6	uncultured_Caudovirales_phage	1.1e-51	52.9
QAV60105.1\|912429_914418_+	hypothetical protein	A0A2H4J6H2	uncultured_Caudovirales_phage	1.3e-187	48.8
QAV60106.1\|914419_914869_+	GNAT family N-acetyltransferase	A0A2H4J9Z5	uncultured_Caudovirales_phage	2.0e-22	42.3
QAV60107.1\|914871_915339_+	hypothetical protein	A0A2H4J679	uncultured_Caudovirales_phage	8.4e-08	46.9
QAV60108.1\|915341_918050_+	lytic transglycosylase	G9L6D3	Escherichia_phage	0.0e+00	65.0
QAV60109.1\|918049_920941_+	hypothetical protein	G9L6D4	Escherichia_phage	0.0e+00	75.6
QAV60110.1\|921005_921347_+	hypothetical protein	A0A2H4J7H0	uncultured_Caudovirales_phage	3.7e-21	51.8
QAV60111.1\|921343_922954_+	transcriptional regulator	A0A2H4JCA3	uncultured_Caudovirales_phage	7.1e-224	69.9
QAV60112.1\|925296_926808_-	hypothetical protein	Q8LTG0	Salmonella_phage	9.9e-42	29.4
QAV60113.1\|926835_927747_-	glycosyltransferase	S5FKN0	Shigella_phage	2.4e-160	91.7
QAV60114.1\|927743_928106_-	GtrA family protein	B9UDL8	Salmonella_phage	3.5e-46	75.0
QAV60115.1\|928255_928480_+\|holin	holin	A5LH82	Enterobacteria_phage	2.8e-22	71.0
QAV60116.1\|928466_929006_+	lysozyme	K7PM52	Enterobacteria_phage	5.3e-91	89.1
QAV60117.1\|929002_929365_+	hypothetical protein	R9TPM9	Aeromonas_phage	2.9e-16	47.9
QAV60118.1\|929929_930505_-	hypothetical protein	NA	NA	NA	NA
QAV60119.1\|930410_931268_-	hypothetical protein	NA	NA	NA	NA
QAV60120.1\|931397_932518_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8

DBSCAN-SWA_2

1746628 : 1829513

Enterobacteria_phage(34.85%)

head,portal,protease,capsid,plate,tail,tRNA,holin,transposase,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAV60852.1\|1746628_1747120_+\|transposase	transposase	NA	NA	NA	NA
QAV60853.1\|1747212_1748334_-	cupin domain-containing protein	NA	NA	NA	NA
QAV60854.1\|1748425_1749889_-	two-component system sensor histidine kinase PhoQ	NA	NA	NA	NA
QAV63753.1\|1749889_1750564_-	two-component system response regulator PhoP	NA	NA	NA	NA
QAV63754.1\|1750634_1751921_-	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	1.6e-109	49.1
QAV60855.1\|1751920_1752136_-	hypothetical protein	A0A0U2RY08	Escherichia_phage	4.8e-19	56.3
QAV60856.1\|1752197_1752437_-	DUF4060 family protein	M9P0E0	Enterobacteria_phage	8.0e-15	56.6
QAV60857.1\|1752423_1754310_-	exodeoxyribonuclease VIII	H6WRX1	Salmonella_phage	1.5e-26	31.5
QAV60858.1\|1754533_1754806_-	hypothetical protein	K7P7B3	Enterobacteria_phage	1.7e-16	46.6
QAV60859.1\|1755661_1756081_-	helix-turn-helix domain-containing protein	K7PM82	Enterobacteria_phage	2.9e-12	53.1
QAV60860.1\|1756158_1756371_+	hypothetical protein	H9C161	Pectobacterium_phage	4.6e-06	43.4
QAV60861.1\|1756370_1756823_+	hypothetical protein	NA	NA	NA	NA
QAV60862.1\|1756845_1757763_+	helix-turn-helix domain-containing protein	U5P0A0	Shigella_phage	7.1e-51	40.3
QAV60863.1\|1757765_1758506_+	DNA replication protein DnaC	H6WRX8	Salmonella_phage	1.9e-99	72.7
QAV60864.1\|1758523_1759183_+	DUF1627 domain-containing protein	A0A088CE47	Shigella_phage	7.1e-13	29.1
QAV60865.1\|1759454_1761176_-	hypothetical protein	D0UIM0	Aggregatibacter_phage	1.8e-55	28.8
QAV60866.1\|1761363_1762032_-	epoxyqueuosine reductase QueH	NA	NA	NA	NA
QAV60867.1\|1762396_1762720_+	hypothetical protein	K7PGV5	Enterobacterial_phage	5.2e-25	52.3
QAV60868.1\|1762892_1763111_+	hypothetical protein	NA	NA	NA	NA
QAV60869.1\|1763256_1763550_+	hypothetical protein	Q6V7S4	Burkholderia_virus	1.4e-21	57.0
QAV60870.1\|1763542_1763911_+	RusA family crossover junction endodeoxyribonuclease	K7P6W0	Enterobacteria_phage	3.2e-39	61.7
QAV60871.1\|1763903_1764254_+	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	8.9e-55	86.6
QAV60872.1\|1764263_1764923_-	hypothetical protein	NA	NA	NA	NA
QAV60873.1\|1764922_1765315_-	hypothetical protein	NA	NA	NA	NA
QAV60874.1\|1765315_1766368_-	hypothetical protein	NA	NA	NA	NA
QAV60875.1\|1766571_1766874_+	hypothetical protein	O64361	Escherichia_phage	4.1e-32	67.3
QAV60876.1\|1766873_1767410_+	lysozyme	K7PM52	Enterobacteria_phage	5.9e-90	89.6
QAV60877.1\|1767406_1767796_+	DUF2570 domain-containing protein	A0A192Y6H8	Salmonella_phage	5.9e-23	50.9
QAV60878.1\|1767689_1767938_+	hypothetical protein	S5FXQ4	Shigella_phage	3.5e-21	68.5
QAV60879.1\|1767977_1768256_-	hypothetical protein	NA	NA	NA	NA
QAV60880.1\|1768806_1769151_+	hypothetical protein	NA	NA	NA	NA
QAV60881.1\|1769698_1770244_+\|terminase	terminase small subunit	K7P7G0	Enterobacteria_phage	4.6e-90	93.4
QAV60882.1\|1770218_1772141_+\|terminase	phage terminase large subunit family protein	K7PGW7	Enterobacteria_phage	0.0e+00	93.8
QAV60883.1\|1772140_1772347_+\|tail	phage tail protein	E4WL20	Enterobacteria_phage	9.3e-28	95.5
QAV60884.1\|1772343_1773933_+\|portal	phage portal protein	E4WL21	Enterobacteria_phage	8.5e-286	91.1
QAV60885.1\|1773913_1775257_+	S49 family peptidase	O64320	Escherichia_phage	4.2e-201	92.6
QAV60886.1\|1775266_1775599_+\|head	head decoration protein	E4WL24	Enterobacteria_phage	1.8e-52	93.6
QAV60887.1\|1775654_1776680_+\|capsid	major capsid protein	K7PGW9	Enterobacteria_phage	4.9e-186	95.3
QAV60888.1\|1776725_1777139_+	DNA-packaging protein	E4WL26	Enterobacteria_phage	4.6e-26	54.3
QAV60889.1\|1777150_1777504_+\|tail	phage tail protein	E4WL27	Enterobacteria_phage	5.4e-60	94.0
QAV60890.1\|1777513_1778098_+\|tail	phage tail protein	M9NZH5	Enterobacteria_phage	1.2e-99	100.0
QAV60891.1\|1778094_1778493_+\|tail	phage tail protein	E4WL29	Enterobacteria_phage	6.5e-70	99.2
QAV60892.1\|1778500_1779244_+\|tail	phage tail protein	K7PKX6	Enterobacterial_phage	3.3e-131	98.8
QAV60893.1\|1779254_1779698_+\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	2.0e-67	91.6
QAV60894.1\|1779694_1780009_+\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	1.5e-53	96.2
QAV60895.1\|1779992_1783130_+\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	0.0e+00	96.5
QAV60896.1\|1783126_1783465_+\|tail	phage tail protein	E4WL34	Enterobacteria_phage	2.3e-60	100.0
QAV60897.1\|1783520_1784258_+\|tail	phage minor tail protein L	M9NYX1	Enterobacteria_phage	5.5e-147	100.0
QAV60898.1\|1784260_1784980_+	peptidase P60	K7PJY5	Enterobacterial_phage	2.2e-140	97.1
QAV60899.1\|1784972_1785590_+\|tail	tail assembly protein	K7PH59	Enterobacterial_phage	3.9e-106	99.5
QAV60900.1\|1785632_1789256_+	DUF1983 domain-containing protein	K7PMC2	Enterobacterial_phage	0.0e+00	92.6
QAV60901.1\|1789257_1790223_+	hypothetical protein	G1CSU0	Cronobacter_virus	3.9e-60	39.7
QAV60902.1\|1790283_1791597_+\|tail	tail fiber domain-containing protein	K7PGY2	Enterobacteria_phage	1.2e-83	50.2
QAV63755.1\|1791593_1792343_-\|tail	phage tail protein	G8C7K5	Escherichia_phage	8.2e-90	68.0
QAV63756.1\|1792473_1793031_+	recombinase family protein	A0A1S6L009	Salmonella_phage	7.0e-78	79.3
QAV60903.1\|1793203_1793623_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	9.4e-35	56.7
QAV60904.1\|1793625_1794894_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	9.0e-230	91.9
QAV60905.1\|1794939_1796685_-	hypothetical protein	NA	NA	NA	NA
QAV60906.1\|1798126_1798582_+	anti-adapter protein IraM	NA	NA	NA	NA
QAV60907.1\|1798666_1800037_-	adenylosuccinate lyase	A0A2H4UUU6	Bodo_saltans_virus	1.1e-108	45.8
QAV60908.1\|1800056_1800686_-	lysogenization regulator HflD	NA	NA	NA	NA
QAV60909.1\|1800713_1801826_-\|tRNA	tRNA 2-thiouridine(34) synthase MnmA	NA	NA	NA	NA
QAV60910.1\|1801866_1802340_-	NUDIX hydrolase	NA	NA	NA	NA
QAV60911.1\|1802339_1803002_-	23S rRNA pseudouridine(2457) synthase RluE	NA	NA	NA	NA
QAV60912.1\|1803119_1804370_+	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	7.9e-21	94.4
QAV60913.1\|1804534_1805281_+	hypothetical protein	NA	NA	NA	NA
QAV60914.1\|1806297_1806579_+\|holin	phage holin family protein	K7PKN9	Enterobacterial_phage	1.3e-19	46.2
QAV60915.1\|1806578_1807208_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	5.1e-101	86.5
QAV60916.1\|1807215_1807485_+	hypothetical protein	G8C7W1	Escherichia_phage	4.2e-28	77.5
QAV60917.1\|1807441_1807627_+	hypothetical protein	K7PM01	Enterobacterial_phage	5.2e-14	76.7
QAV60918.1\|1807699_1807930_+	hypothetical protein	NA	NA	NA	NA
QAV60919.1\|1808475_1808736_-	hypothetical protein	NA	NA	NA	NA
QAV63757.1\|1809320_1809824_+	DUF1441 family protein	K7PJY2	Enterobacterial_phage	3.1e-48	62.3
QAV60920.1\|1809827_1811948_+\|terminase	phage terminase large subunit family protein	A5LH27	Enterobacteria_phage	6.4e-305	74.8
QAV60921.1\|1811944_1812160_+	hypothetical protein	NA	NA	NA	NA
QAV60922.1\|1812168_1813689_+\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	2.1e-153	55.4
QAV63758.1\|1813678_1815757_+\|protease	Clp protease ClpP	A0A1B0YZU0	Pseudomonas_phage	6.7e-198	58.2
QAV60923.1\|1815823_1816159_+	DUF2190 family protein	Q9EYD5	Enterobacteria_phage	9.9e-11	42.7
QAV60924.1\|1816158_1816515_+	hypothetical protein	NA	NA	NA	NA
QAV60925.1\|1816516_1817179_+	hypothetical protein	R9TR34	Vibrio_phage	1.1e-21	36.7
QAV60926.1\|1817187_1817742_+	hypothetical protein	NA	NA	NA	NA
QAV60927.1\|1817734_1818358_+\|plate	phage baseplate assembly protein V	Q8HAB9	Salmonella_phage	7.2e-07	30.8
QAV60928.1\|1818396_1819866_+\|tail	phage tail protein	R9TMQ0	Vibrio_phage	8.3e-78	47.1
QAV60929.1\|1819862_1820369_+\|tail	phage tail protein	NA	NA	NA	NA
QAV60930.1\|1820420_1820708_+\|tail	phage tail assembly protein	NA	NA	NA	NA
QAV60931.1\|1822909_1823380_+\|tail	phage tail protein	D4HTW5	Vibrio_phage	2.4e-15	34.1
QAV60932.1\|1823354_1823570_+\|tail	phage tail protein	R9TR63	Vibrio_phage	6.7e-13	52.9
QAV60933.1\|1823572_1824691_+	late control protein D	R9TNM7	Vibrio_phage	7.1e-37	33.4
QAV60934.1\|1824729_1825083_+\|plate	baseplate assembly protein	E5FFH4	Burkholderia_phage	3.8e-21	50.9
QAV60935.1\|1825066_1825981_+\|plate	baseplate assembly protein	A0A088FQL4	Escherichia_phage	3.8e-65	49.3
QAV60936.1\|1825973_1826525_+\|tail	phage tail protein I	A0A0F7LDF3	Escherichia_phage	3.3e-27	41.0
QAV60937.1\|1829090_1829513_+\|tail	tail fiber assembly protein	U5P083	Shigella_phage	1.9e-27	48.2

DBSCAN-SWA_3

1844353 : 1889734

Enterobacterial_phage(25.93%)

head,portal,protease,capsid,tail,tRNA,integrase,holin,terminase

attL 1841578:1841592|attR 1862826:1862840

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1841578:1841592	attL	NA	NA	NA	NA
QAV60955.1\|1844353_1844854_-\|tRNA	YbaK/prolyl-tRNA synthetase associated domain-containing protein	NA	NA	NA	NA
QAV60956.1\|1845073_1846216_-\|integrase	integrase	O21929	Phage_21	2.7e-92	48.7
QAV60957.1\|1846190_1846454_-	hypothetical protein	NA	NA	NA	NA
QAV60958.1\|1846489_1846759_-	hypothetical protein	M9NZE4	Enterobacteria_phage	1.3e-13	91.1
QAV60959.1\|1846762_1847224_-	ead/Ea22-like family protein	A0A125RPT9	Escherichia_phage	4.5e-14	38.9
QAV60960.1\|1847220_1847424_-	restriction alleviation protein, Lar family	NA	NA	NA	NA
QAV60961.1\|1847420_1847897_-	hypothetical protein	K7PHA5	Enterobacterial_phage	5.3e-26	51.4
QAV60962.1\|1847883_1848909_-	chromosome partitioning protein ParB	K7PKM7	Enterobacterial_phage	2.5e-166	89.2
QAV63760.1\|1848905_1849319_-	hypothetical protein	K7PJS4	Enterobacterial_phage	1.2e-53	84.7
QAV60963.1\|1849367_1849688_-	hypothetical protein	K7P7N6	Enterobacteria_phage	4.7e-26	55.7
QAV60964.1\|1850122_1850623_+	hypothetical protein	I6R9C3	Salmonella_phage	7.8e-12	28.7
QAV60965.1\|1850896_1851097_+	hypothetical protein	NA	NA	NA	NA
QAV60966.1\|1851419_1852052_-	helix-turn-helix domain-containing protein	A0A1W6JP50	Morganella_phage	1.1e-50	56.7
QAV60967.1\|1852152_1852356_+	hypothetical protein	A0A1W6JP24	Morganella_phage	7.3e-17	60.0
QAV60968.1\|1852372_1852933_+	hypothetical protein	A5LH68	Enterobacteria_phage	1.9e-46	52.2
QAV60969.1\|1853096_1853303_+	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	8.4e-13	67.3
QAV60970.1\|1853265_1854192_+	transcriptional regulator	K7PLZ7	Enterobacterial_phage	9.9e-69	55.2
QAV60971.1\|1854188_1854683_+	hypothetical protein	NA	NA	NA	NA
QAV60972.1\|1854682_1855342_+	DNA methyltransferase	I6PDF5	Cronobacter_phage	1.5e-98	79.3
QAV60973.1\|1855338_1855566_+	hypothetical protein	NA	NA	NA	NA
QAV60974.1\|1855562_1855952_+	RusA family crossover junction endodeoxyribonuclease	K7PKN5	Enterobacterial_phage	1.2e-68	95.3
QAV60975.1\|1855948_1856938_+	DUF968 domain-containing protein	K7PJS6	Enterobacterial_phage	5.6e-179	89.4
QAV60976.1\|1856950_1857529_+	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.6e-45	53.3
QAV60977.1\|1857972_1858362_+	hypothetical protein	G8C7V8	Escherichia_phage	2.3e-59	94.5
QAV60978.1\|1858351_1858630_+\|holin	phage holin family protein	G8C7V9	Escherichia_phage	9.6e-36	87.4
QAV60979.1\|1858629_1859259_+	glycoside hydrolase family 19 protein	G8C7W0	Escherichia_phage	2.9e-112	95.7
QAV60980.1\|1859266_1859542_+	hypothetical protein	G8C7W1	Escherichia_phage	3.6e-19	61.5
QAV63761.1\|1859492_1859672_+	hypothetical protein	A0A286SGR9	Klebsiella_phage	4.0e-19	80.0
QAV63762.1\|1859738_1859996_+	hypothetical protein	G8C7W3	Escherichia_phage	5.1e-15	52.7
QAV60981.1\|1860234_1860699_-\|protease	retroviral-like aspartic protease	NA	NA	NA	NA
QAV60982.1\|1860959_1861757_+	DUF1983 domain-containing protein	S4TNN5	Salmonella_phage	3.5e-54	52.8
QAV60983.1\|1861759_1861993_+	hypothetical protein	NA	NA	NA	NA
QAV60984.1\|1862033_1863491_+	glycosyltransferase family 2 protein	K7PKP3	Enterobacterial_phage	3.9e-277	93.4
1862826:1862840	attR	NA	NA	NA	NA
QAV60985.1\|1863450_1864128_+	HNH endonuclease	A0A1W6DXY0	Salmonella_phage	1.7e-14	37.0
QAV60986.1\|1864121_1864703_+	hypothetical protein	S4TR53	Salmonella_phage	5.2e-76	70.4
QAV60987.1\|1864695_1865064_+	HNH endonuclease	S4TTG9	Salmonella_phage	1.9e-55	86.9
QAV60988.1\|1865170_1865665_+\|terminase	terminase small subunit	S4TNN3	Salmonella_phage	1.7e-83	100.0
QAV60989.1\|1865661_1867323_+\|terminase	terminase large subunit	S4TSQ6	Salmonella_phage	0.0e+00	98.7
QAV60990.1\|1867381_1869316_+\|capsid	phage major capsid protein	S4TNE3	Salmonella_phage	0.0e+00	98.3
QAV60991.1\|1869519_1870878_+\|portal	phage portal protein	S4TTG7	Salmonella_phage	8.6e-247	93.1
QAV60992.1\|1870874_1871918_+\|head,tail	phage gp6-like head-tail connector protein	S4TNN1	Salmonella_phage	1.2e-102	83.9
QAV60993.1\|1871914_1872241_+\|head,tail	phage gp6-like head-tail connector protein	S4TSQ3	Salmonella_phage	5.8e-48	89.8
QAV60994.1\|1872249_1872600_+\|head,tail	head-tail adaptor protein	S4TND9	Salmonella_phage	1.7e-53	90.5
QAV60995.1\|1872596_1873046_+	HK97 gp10 family phage protein	K7PH34	Enterobacterial_phage	5.8e-75	98.7
QAV60996.1\|1873042_1873390_+	DUF3168 domain-containing protein	K7PM93	Enterobacterial_phage	2.0e-59	100.0
QAV60997.1\|1873449_1873893_+	hypothetical protein	K7PHL2	Enterobacterial_phage	1.6e-72	94.5
QAV60998.1\|1873901_1874285_+\|tail	phage tail protein	K7PKV6	Enterobacterial_phage	4.4e-63	93.7
QAV60999.1\|1874293_1874572_+	DUF4035 domain-containing protein	Q9MCS5	Enterobacteria_phage	1.2e-43	97.8
QAV61000.1\|1874627_1874969_+	hypothetical protein	NA	NA	NA	NA
QAV63763.1\|1875026_1878329_+\|tail	phage tail tape measure protein	K7P7L6	Enterobacteria_phage	0.0e+00	86.4
QAV61001.1\|1878331_1878670_+\|tail	phage tail protein	K7PKL8	Enterobacterial_phage	4.3e-38	59.8
QAV61002.1\|1878666_1879425_+\|tail	phage minor tail protein L	A0A1W6JNX9	Morganella_phage	3.9e-95	63.6
QAV61003.1\|1879427_1880138_+	peptidase P60	F1C573	Cronobacter_phage	1.3e-97	70.2
QAV61004.1\|1880137_1880722_+\|tail	tail assembly protein	A0A1P8DTG7	Proteus_phage	1.1e-54	53.1
QAV61005.1\|1880775_1884579_+	DUF1983 domain-containing protein	Q9MCU0	Escherichia_phage	0.0e+00	63.3
QAV61006.1\|1884622_1884937_+	hypothetical protein	A0A2P0WA17	Enterobacter_phage	7.3e-32	63.7
QAV61007.1\|1884937_1885609_+	hypothetical protein	A0A2P0WA07	Enterobacter_phage	9.9e-87	72.2
QAV61008.1\|1885716_1885950_+	cor protein	E4WL42	Enterobacteria_phage	3.9e-30	77.6
QAV61009.1\|1886008_1887136_+\|tail	tail fiber domain-containing protein	A0A2I6PID3	Escherichia_phage	1.3e-51	36.8
QAV61010.1\|1887267_1887534_-	DinI family protein	K7PKM2	Enterobacterial_phage	2.0e-38	92.0
QAV61011.1\|1887630_1887870_+	hypothetical protein	K7P7N3	Enterobacteria_phage	1.5e-29	77.2
QAV61012.1\|1887869_1888190_+	hypothetical protein	K7PGV5	Enterobacterial_phage	2.3e-25	52.8
QAV61013.1\|1888450_1889734_-	YeaH/YhbH family protein	A0A140HLI1	Bacillus_phage	1.1e-09	28.3

DBSCAN-SWA_4

2054703 : 2102398

Salmonella_phage(40.62%)

head,lysis,tail,holin,terminase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAV61172.1\|2054703_2055984_-	DUF3596 domain-containing protein	B6DZ48	Enterobacteria_phage	1.1e-123	50.9
QAV61173.1\|2056016_2056265_-	DNA-binding protein	S4TND0	Salmonella_phage	8.3e-15	50.0
QAV61174.1\|2056383_2056632_-	hypothetical protein	A0A1B0V7L5	Salmonella_phage	2.4e-06	61.1
QAV61175.1\|2056641_2056881_-	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	7.0e-11	47.4
QAV61176.1\|2056843_2057356_-	class I SAM-dependent methyltransferase	H9C170	Pectobacterium_phage	1.4e-69	78.4
QAV61177.1\|2057355_2057574_-	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	1.7e-16	62.5
QAV61178.1\|2057665_2058052_-	DUF2591 domain-containing protein	A0A1J0GUX1	Halomonas_phage	6.5e-06	34.2
QAV61179.1\|2058048_2058240_-	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	3.2e-14	66.1
QAV61180.1\|2058236_2058533_-	DUF4406 domain-containing protein	A0A0U2SAZ1	Escherichia_phage	9.3e-29	62.4
QAV61181.1\|2058532_2058748_-	hypothetical protein	NA	NA	NA	NA
QAV61182.1\|2058744_2059239_-	HNH endonuclease	A0A0H5ARI7	Pseudomonas_phage	4.5e-28	45.8
QAV61183.1\|2059235_2059787_-	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	1.6e-53	57.1
QAV61184.1\|2059947_2060376_-	regulator	M9NYX4	Enterobacteria_phage	1.7e-71	93.7
QAV61185.1\|2060372_2061053_-	exonuclease	M9NZE1	Enterobacteria_phage	9.0e-128	95.1
QAV61186.1\|2061338_2062184_-	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	9.6e-71	59.7
QAV61187.1\|2062202_2062487_-	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	8.5e-48	93.6
QAV61188.1\|2062559_2062793_-	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	5.4e-32	95.5
QAV61189.1\|2062770_2063277_-	HNH endonuclease	Q5DMP6	Escherichia_phage	1.9e-26	41.1
QAV61190.1\|2063428_2063731_-	superinfection exclusion protein	Q76H37	Enterobacteria_phage	5.2e-43	82.0
QAV61191.1\|2063892_2064138_-	hypothetical protein	NA	NA	NA	NA
QAV61192.1\|2064860_2065613_-	LexA family transcriptional regulator	A0A286S2B2	Klebsiella_phage	9.2e-73	64.0
QAV61193.1\|2065654_2065888_+	transcriptional regulator	A0A0P0ZDD7	Stx2-converting_phage	2.6e-18	62.3
QAV61194.1\|2065905_2066451_+	hypothetical protein	K7P7P2	Enterobacteria_phage	2.8e-95	97.2
QAV61195.1\|2066690_2067776_+	DNA replication protein	E5AGE9	Erwinia_phage	3.0e-85	45.4
QAV61196.1\|2067772_2069146_+	replicative DNA helicase	E5AGF0	Erwinia_phage	9.9e-166	63.5
QAV61197.1\|2069135_2069450_+	protein ren	M1FPD5	Enterobacteria_phage	5.1e-17	52.6
QAV61198.1\|2069446_2069695_+	XRE family transcriptional regulator	NA	NA	NA	NA
QAV61199.1\|2070032_2070245_+	hypothetical protein	NA	NA	NA	NA
QAV61200.1\|2070241_2070850_+	DUF551 domain-containing protein	G8C7V0	Escherichia_phage	3.1e-47	69.3
QAV61201.1\|2070846_2071089_+	hypothetical protein	NA	NA	NA	NA
QAV61202.1\|2071337_2071793_+	hypothetical protein	K7P7B8	Enterobacteria_phage	5.4e-60	72.2
QAV61203.1\|2071792_2071963_+	NinE family protein	K7P7K0	Enterobacteria_phage	1.5e-20	91.1
QAV61204.1\|2071955_2072588_+	hypothetical protein	S4TSR3	Salmonella_phage	4.7e-54	52.8
QAV61205.1\|2072584_2072701_+	hypothetical protein	NA	NA	NA	NA
QAV61206.1\|2072697_2073384_+	antiterminator	I6PDF8	Cronobacter_phage	6.6e-62	55.3
QAV63771.1\|2073875_2074181_+\|holin	holin	E7C9S8	Salmonella_phage	1.1e-43	86.1
QAV61207.1\|2074167_2074608_+	lysozyme	A0A0M4R365	Salmonella_phage	7.0e-57	76.5
QAV61208.1\|2074604_2075078_+\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	7.1e-39	59.7
QAV61209.1\|2075282_2075969_+	hypothetical protein	A0A192Y918	Salmonella_phage	1.8e-123	99.1
QAV61210.1\|2076629_2077268_+	hypothetical protein	I6S676	Salmonella_phage	2.8e-115	92.5
QAV61211.1\|2077299_2077755_+	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	1.8e-63	81.3
QAV61212.1\|2077751_2078999_+\|terminase	PBSX family phage terminase large subunit	I6RSK1	Salmonella_phage	4.5e-218	98.6
QAV61213.1\|2079013_2080363_+	DUF1073 domain-containing protein	I6R9A1	Salmonella_phage	5.2e-228	86.4
QAV61214.1\|2080322_2081249_+\|head	phage head morphogenesis protein	Q5G8Y3	Enterobacteria_phage	1.8e-163	93.5
QAV61215.1\|2081251_2082517_+	hypothetical protein	Q5G8Y2	Enterobacteria_phage	9.3e-219	91.0
QAV61216.1\|2082529_2082979_+	hypothetical protein	A0A1V0E5Q8	Salmonella_phage	7.1e-65	86.6
QAV61217.1\|2082996_2084073_+	hypothetical protein	Q5G8Y0	Enterobacteria_phage	5.0e-181	88.5
QAV61218.1\|2084082_2084376_+	hypothetical protein	A0A1V0E5P8	Salmonella_phage	2.9e-43	90.7
QAV61219.1\|2084438_2084840_+	hypothetical protein	A0A1V0E5R0	Salmonella_phage	3.0e-62	85.0
QAV63773.1\|2084839_2085028_+	hypothetical protein	I6R0P9	Salmonella_phage	2.0e-29	93.5
QAV63772.1\|2085011_2085374_+	hypothetical protein	I6S1Q5	Salmonella_phage	4.9e-64	93.3
QAV61220.1\|2085381_2085777_+	hypothetical protein	I6RSK8	Salmonella_phage	1.5e-66	96.2
QAV61221.1\|2085773_2086160_+	hypothetical protein	Q5G8X4	Enterobacteria_phage	6.6e-67	96.9
QAV61222.1\|2086177_2086912_+	hypothetical protein	H6WRU1	Salmonella_phage	2.1e-114	85.6
QAV61223.1\|2086951_2087605_+	hypothetical protein	I6R0Q2	Salmonella_phage	3.5e-113	92.6
QAV61224.1\|2088166_2088526_+	hypothetical protein	A0A1V0E5N7	Salmonella_phage	2.7e-38	60.8
QAV61225.1\|2088551_2088833_+	hypothetical protein	H6WRV2	Salmonella_phage	2.5e-31	91.4
QAV61226.1\|2088925_2089255_+	hypothetical protein	NA	NA	NA	NA
QAV61227.1\|2089251_2089722_+	hypothetical protein	NA	NA	NA	NA
QAV61228.1\|2089779_2092089_+	hypothetical protein	H6WRV7	Salmonella_phage	3.0e-114	41.3
QAV61229.1\|2092091_2092439_+\|tail	phage tail protein	A0A1V0E5N3	Salmonella_phage	1.1e-57	90.4
QAV61230.1\|2092450_2092699_+	hypothetical protein	NA	NA	NA	NA
QAV61231.1\|2092682_2092922_-	hypothetical protein	NA	NA	NA	NA
QAV61232.1\|2093088_2093793_+\|tail	phage minor tail protein L	A0A1V0E5N2	Salmonella_phage	9.3e-136	98.7
QAV63774.1\|2093792_2094512_+\|tail	phage tail protein	A0A1V0E5M9	Salmonella_phage	3.3e-120	82.3
QAV61233.1\|2094454_2094988_+\|tail	tail assembly protein	H6WRW3	Salmonella_phage	4.0e-54	67.0
QAV61234.1\|2094997_2098789_+	DUF1983 domain-containing protein	I6R9B3	Salmonella_phage	0.0e+00	61.2
QAV61235.1\|2098831_2099146_+	hypothetical protein	A0A2P0WA17	Enterobacter_phage	3.0e-33	65.7
QAV61236.1\|2099146_2099818_+	hypothetical protein	A0A2P0WA07	Enterobacter_phage	8.4e-86	71.7
QAV61237.1\|2099925_2100159_+	cor protein	E4WL42	Enterobacteria_phage	4.3e-29	74.0
QAV61238.1\|2100216_2101344_+\|tail	tail fiber domain-containing protein	A0A2I6PID3	Escherichia_phage	3.9e-51	36.5
QAV61239.1\|2101475_2101742_-	DinI family protein	K7PKM2	Enterobacterial_phage	2.0e-38	93.2
QAV61240.1\|2101841_2102081_+	hypothetical protein	K7P7N3	Enterobacteria_phage	2.8e-36	87.2
QAV61241.1\|2102080_2102398_+	hypothetical protein	K7PGV5	Enterobacterial_phage	1.1e-19	48.0

DBSCAN-SWA_5

2165741 : 2172853

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAV61297.1\|2165741_2166401_+	type A chloramphenicol O-acetyltransferase	G3CFL0	Escherichia_phage	4.1e-77	62.1
QAV61298.1\|2166457_2166769_-	DNA damage-inducible SOS regulon protein	NA	NA	NA	NA
QAV61299.1\|2166877_2167492_-	Tat proofreading chaperone DmsD	A0A077SLS7	Escherichia_phage	2.8e-27	33.7
QAV61300.1\|2167537_2168392_-	dimethyl sulfoxide reductase anchor subunit	A0A077SK59	Escherichia_phage	2.0e-23	34.9
QAV61301.1\|2168393_2169011_-	dimethylsulfoxide reductase subunit B	A0A077SL61	Escherichia_phage	8.9e-74	58.6
QAV61302.1\|2169021_2171460_-	dimethyl sulfoxide reductase subunit A	A0A077SK27	Escherichia_phage	1.2e-217	50.0
QAV61303.1\|2171590_2171896_-	DUF1161 domain-containing protein	NA	NA	NA	NA
QAV61304.1\|2171998_2172853_-	benzoate transporter	M1I711	Paramecium_bursaria_Chlorella_virus	2.4e-24	32.5

DBSCAN-SWA_6

2180693 : 2190552

Morganella_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAV61312.1\|2180693_2180897_-	putative selenium delivery protein YdfZ	J9Q802	Salmonella_phage	4.4e-14	56.7
QAV61313.1\|2181184_2181616_+	universal stress protein UspG	A0A1W6JNV4	Morganella_phage	1.5e-16	35.2
QAV61314.1\|2181651_2182338_-	GntR family transcriptional regulator	NA	NA	NA	NA
QAV61315.1\|2182428_2183175_-	bifunctional NADP-dependent 3-hydroxy acid dehydrogenase/3-hydroxypropionate dehydrogenase YdfG	NA	NA	NA	NA
QAV61316.1\|2183318_2185352_+	peptidyl-dipeptidase Dcp	A0A1V0SIU1	Klosneuvirus	1.7e-20	22.4
QAV61317.1\|2185967_2186195_-	hypothetical protein	NA	NA	NA	NA
QAV61318.1\|2186757_2186976_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	8.3e-19	62.7
QAV61319.1\|2187343_2188033_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.7e-81	60.5
QAV61320.1\|2188296_2188536_-	DinI family protein	K7PKM2	Enterobacterial_phage	1.5e-32	91.1
QAV61321.1\|2188862_2189282_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	7.2e-35	56.7
QAV61322.1\|2189283_2190552_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	2.1e-226	90.8

DBSCAN-SWA_7

2498472 : 2536421

Enterobacteria_phage(40.0%)

transposase,plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAV61583.1\|2498472_2499600_+	porin OmpS2	Q1MVN1	Enterobacteria_phage	5.2e-120	60.3
QAV61584.1\|2499633_2500056_-	GFA family protein	NA	NA	NA	NA
QAV61585.1\|2500059_2500257_-	hypothetical protein	NA	NA	NA	NA
QAV61586.1\|2500563_2500860_+	hypothetical protein	A0A0U2JGI6	Escherichia_phage	3.0e-19	56.5
QAV61587.1\|2501186_2501861_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	3.1e-80	59.2
QAV61588.1\|2501912_2502125_-	cold shock-like protein CspF	NA	NA	NA	NA
QAV61589.1\|2502412_2502631_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	2.1e-17	62.7
QAV61590.1\|2503186_2503414_+	hypothetical protein	NA	NA	NA	NA
QAV61591.1\|2503587_2503926_+	hypothetical protein	NA	NA	NA	NA
QAV61592.1\|2504299_2505568_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	9.0e-230	91.9
QAV61593.1\|2505570_2505990_-	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	1.4e-35	57.5
QAV61594.1\|2506186_2507452_-\|tail	phage tail protein	K7P6T0	Enterobacteria_phage	2.1e-146	64.3
QAV61595.1\|2507511_2507745_-	cor protein	E4WL42	Enterobacteria_phage	1.7e-30	77.9
QAV61596.1\|2507852_2508524_-	hypothetical protein	A0A2P0WA07	Enterobacter_phage	1.0e-83	70.4
QAV61597.1\|2508524_2508839_-	hypothetical protein	A0A2P0WA17	Enterobacter_phage	1.1e-35	70.6
QAV61598.1\|2508881_2512436_-	DUF1983 domain-containing protein	K7P868	Enterobacteria_phage	0.0e+00	88.6
QAV61599.1\|2512494_2513424_-	hypothetical protein	NA	NA	NA	NA
QAV61600.1\|2513467_2514097_-\|tail	tail assembly protein	K7PGY0	Enterobacteria_phage	3.1e-58	61.8
QAV61601.1\|2514129_2514840_-	peptidase P60	K7PGV2	Enterobacterial_phage	1.3e-140	94.8
QAV61602.1\|2514841_2515597_-\|tail	phage minor tail protein L	G8C7J7	Escherichia_phage	1.2e-117	79.2
QAV61603.1\|2515593_2515941_-\|tail	phage tail protein	I6PBN7	Cronobacter_phage	2.0e-38	64.3
QAV61604.1\|2516015_2516675_-	hypothetical protein	A0A0R6PJY5	Moraxella_phage	7.1e-37	42.5
QAV61605.1\|2516671_2517792_-\|transposase	IS3-like element ISSen4 family transposase	S5WIU1	Leptospira_phage	1.7e-51	42.8
QAV61606.1\|2517702_2517882_+	hypothetical protein	NA	NA	NA	NA
QAV61607.1\|2518462_2519161_-	Replication protein P	A0A0M3ULE2	Salmonella_phage	1.3e-94	72.6
QAV63785.1\|2519157_2520015_-	hypothetical protein	K7PGZ0	Enterobacteria_phage	3.4e-100	70.4
QAV61608.1\|2520159_2520711_-	hypothetical protein	K7PJT7	Enterobacteria_phage	5.7e-32	45.9
QAV61609.1\|2520713_2520932_-	Rha family transcriptional regulator	K7PKS2	Enterobacteria_phage	4.1e-18	59.2
QAV61610.1\|2521029_2521413_+	helix-turn-helix domain-containing protein	K7PHG0	Enterobacteria_phage	7.5e-47	77.2
QAV61611.1\|2521476_2521884_+	hypothetical protein	NA	NA	NA	NA
QAV61612.1\|2522658_2525796_+	exodeoxyribonuclease	K7P6V4	Enterobacteria_phage	0.0e+00	61.9
QAV61613.1\|2525805_2526891_+	enterohemolysin	K7PKR8	Enterobacteria_phage	1.8e-125	64.4
QAV61614.1\|2526929_2527172_+	DUF4060 family protein	K7PHF4	Enterobacteria_phage	7.3e-32	89.7
QAV61615.1\|2527236_2527449_+	hypothetical protein	A0A0U2RY08	Escherichia_phage	4.3e-20	63.4
QAV61616.1\|2527450_2528689_+	DUF3596 domain-containing protein	A0A0U2JGI6	Escherichia_phage	2.0e-170	70.7
QAV61617.1\|2528738_2529674_+\|tRNA	tRNA 2-thiocytidine(32) synthetase TtcA	A0A0U2S5Z2	Escherichia_phage	5.2e-142	95.7
QAV61618.1\|2529716_2531090_-	ATP-dependent RNA helicase DbpA	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	3.3e-52	32.7
QAV61619.1\|2531575_2532559_-	zinc transporter ZntB	NA	NA	NA	NA
QAV61620.1\|2532649_2533780_-	chemoreceptor protein	A0A2H4J162	uncultured_Caudovirales_phage	5.7e-10	28.6
QAV61621.1\|2534096_2534585_-	hypothetical protein	NA	NA	NA	NA
QAV61622.1\|2534613_2535942_-	hypothetical protein	NA	NA	NA	NA
QAV61623.1\|2535965_2536421_-\|plate	type VI secretion system baseplate subunit TssE	NA	NA	NA	NA

DBSCAN-SWA_8

2929570 : 2975228

Enterobacteria_phage(26.23%)

head,coat,lysis,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAV61962.1\|2929570_2929810_-	hypothetical protein	K7P7E2	Enterobacteria_phage	4.1e-27	71.8
QAV61963.1\|2929922_2930285_+	GtrA family protein	U5P0S6	Shigella_phage	1.2e-49	84.2
QAV61964.1\|2930281_2931223_+	glycosyltransferase	U5P087	Shigella_phage	6.1e-159	91.1
QAV61965.1\|2931219_2932701_+	hypothetical protein	NA	NA	NA	NA
QAV61966.1\|2932730_2934755_-	hypothetical protein	F1C5A8	Cronobacter_phage	1.5e-40	62.9
QAV61967.1\|2934812_2937290_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	0.0e+00	92.5
QAV61968.1\|2937276_2937669_-	peptidoglycan endopeptidase	F1C5F2	Cronobacter_phage	1.4e-64	88.7
QAV61969.1\|2937678_2938149_-	hypothetical protein	F1C5F1	Cronobacter_phage	1.8e-79	92.9
QAV61970.1\|2938148_2938652_-	hypothetical protein	F1C5F0	Cronobacter_phage	4.8e-86	87.4
QAV61971.1\|2938651_2940976_-\|tail	phage tail tape measure protein	A0A1B1W284	Salmonella_phage	7.8e-147	51.2
QAV61972.1\|2941033_2941408_-	hypothetical protein	A0A0M4QWT0	Salmonella_phage	1.8e-24	52.4
QAV61973.1\|2941480_2942224_-	hypothetical protein	G0ZNE7	Cronobacter_phage	5.0e-63	52.2
QAV61974.1\|2942274_2943030_-	Ig domain-containing protein	G0ZNE6	Cronobacter_phage	3.8e-58	52.6
QAV61975.1\|2943088_2943472_-	hypothetical protein	F1C5E4	Cronobacter_phage	1.5e-39	59.1
QAV61976.1\|2943468_2943837_-	HK97 gp10 family phage protein	F1C5E3	Cronobacter_phage	8.8e-45	73.8
QAV61977.1\|2943839_2944190_-	hypothetical protein	G0ZNE2	Cronobacter_phage	3.1e-39	67.0
QAV61978.1\|2944189_2944363_-	50S ribosomal protein L13	I6R0P9	Salmonella_phage	1.6e-09	48.1
QAV61979.1\|2944362_2944743_-	hypothetical protein	F1C5E2	Cronobacter_phage	9.1e-29	53.7
QAV61980.1\|2944745_2945069_-	hypothetical protein	NA	NA	NA	NA
QAV61981.1\|2945101_2946157_-\|coat	phage coat protein	R9TMI8	Aeromonas_phage	2.4e-103	52.9
QAV61982.1\|2946153_2946615_-	hypothetical protein	B1GS72	Salmonella_phage	3.4e-30	51.7
QAV61983.1\|2946614_2947985_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	9.3e-124	52.5
QAV61984.1\|2948060_2948546_-	hypothetical protein	NA	NA	NA	NA
QAV63803.1\|2948596_2949607_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	1.3e-114	69.0
QAV61985.1\|2949524_2950976_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	1.1e-117	50.6
QAV61986.1\|2950987_2952460_-	DNA-packaging protein	G0ZND4	Cronobacter_phage	3.0e-253	85.7
QAV61987.1\|2952446_2952926_-	DUF2280 domain-containing protein	I6S1P9	Salmonella_phage	3.3e-60	87.2
QAV61988.1\|2952958_2953597_-	hypothetical protein	I6S676	Salmonella_phage	6.9e-114	91.5
QAV61989.1\|2953600_2953819_-	hypothetical protein	NA	NA	NA	NA
QAV61990.1\|2953914_2954115_-	hypothetical protein	NA	NA	NA	NA
QAV61991.1\|2954153_2954615_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	2.9e-45	67.3
QAV61992.1\|2954910_2955405_-	lysozyme	M9P0E5	Enterobacteria_phage	2.7e-89	97.0
QAV61993.1\|2955382_2955607_-\|lysis	lysis protein	M9NZI9	Enterobacteria_phage	2.7e-33	94.6
QAV61994.1\|2956182_2956806_-	hypothetical protein	A0A2H4FND2	Salmonella_phage	1.2e-83	71.1
QAV61995.1\|2956805_2956922_-	hypothetical protein	NA	NA	NA	NA
QAV61996.1\|2956918_2957563_-	hypothetical protein	S4TSR3	Salmonella_phage	2.7e-73	69.2
QAV61997.1\|2957556_2958057_-	HNH endonuclease	A0A1I9SEX5	Klebsiella_phage	2.0e-36	52.0
QAV61998.1\|2958020_2958191_-	hypothetical protein	K7P7K0	Enterobacteria_phage	8.5e-19	90.6
QAV61999.1\|2958190_2958772_-	HNH endonuclease	A0A2H4PQR4	Staphylococcus_phage	4.8e-21	43.4
QAV62000.1\|2958764_2959196_-	hypothetical protein	A0A2H4FNF5	Salmonella_phage	1.3e-26	42.9
QAV62001.1\|2959699_2960302_-	hypothetical protein	G8C7V0	Escherichia_phage	3.7e-32	55.4
QAV62002.1\|2960298_2960688_-	ead/Ea22-like family protein	K7P6V8	Enterobacteria_phage	1.0e-11	52.7
QAV62003.1\|2960684_2960885_-	hypothetical protein	NA	NA	NA	NA
QAV62004.1\|2960881_2961226_-	ArsR family transcriptional regulator	G8C7U7	Escherichia_phage	8.5e-50	87.6
QAV62005.1\|2961222_2962095_-	AAA family ATPase	K7PLU3	Enterobacteria_phage	1.2e-103	66.5
QAV62006.1\|2962079_2962949_-	replication protein	K7PGT1	Enterobacteria_phage	7.9e-68	51.2
QAV62007.1\|2963295_2963841_-	hypothetical protein	G8C7U3	Escherichia_phage	8.1e-95	97.8
QAV62008.1\|2963871_2964090_-	XRE family transcriptional regulator	A0A0N7C2U7	Escherichia_phage	1.9e-10	47.0
QAV62009.1\|2964198_2964858_+	helix-turn-helix domain-containing protein	F1C599	Cronobacter_phage	7.5e-71	65.1
QAV62010.1\|2964951_2965713_+	KilA-N domain-containing protein	A0A1L2BWW1	Bacteriophage	1.1e-09	46.3
QAV62011.1\|2965851_2966049_-	hypothetical protein	G8C7T7	Escherichia_phage	1.8e-25	96.9
QAV62012.1\|2966413_2966839_+	tellurite/colicin resistance protein	Q71TK7	Escherichia_phage	3.5e-53	76.6
QAV62013.1\|2966838_2966991_+	DUF3927 domain-containing protein	A0A0A0YRI9	Escherichia_phage	2.7e-08	67.4
QAV62014.1\|2967045_2967303_+	hypothetical protein	NA	NA	NA	NA
QAV62015.1\|2967454_2967664_+	cell division protein FtsZ	M9NZE2	Enterobacteria_phage	2.0e-33	94.2
QAV62016.1\|2967674_2968109_+	hypothetical protein	G0YQE7	Erwinia_phage	9.4e-46	61.1
QAV62017.1\|2968181_2968463_+	host nuclease inhibitor GamL	M9NZI3	Enterobacteria_phage	3.2e-47	96.8
QAV62018.1\|2968472_2969390_+	recombinase RecT	M9NZA6	Enterobacteria_phage	5.1e-158	90.2
QAV62019.1\|2969386_2970067_+	exonuclease	M9NZE1	Enterobacteria_phage	2.9e-126	94.7
QAV62020.1\|2970063_2970492_+	regulator	M9NYX4	Enterobacteria_phage	4.4e-72	95.1
QAV62021.1\|2970652_2971204_+	phage N-6-adenine-methyltransferase	E5AGF8	Erwinia_phage	1.1e-54	58.3
QAV62022.1\|2971200_2971419_+	hypothetical protein	NA	NA	NA	NA
QAV62023.1\|2971415_2971952_+	hypothetical protein	J9Q748	Salmonella_phage	7.2e-72	74.3
QAV62024.1\|2971948_2972140_+	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	1.6e-13	62.7
QAV62025.1\|2972231_2972450_+	TraR/DksA family transcriptional regulator	M1FQT7	Enterobacteria_phage	5.4e-18	63.9
QAV62026.1\|2972449_2973001_+	bifunctional (p)ppGpp synthetase/guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	A0A218M393	Acidovorax_phage	6.6e-20	44.1
QAV62027.1\|2972963_2973203_+	DUF4222 domain-containing protein	Q6H9Z8	Enterobacteria_phage	6.3e-12	50.0
QAV62028.1\|2973212_2973539_+	DUF550 domain-containing protein	K7PGV7	Enterobacterial_phage	3.3e-43	81.0
QAV62029.1\|2973641_2973887_+	excisionase	Q8W657	Enterobacteria_phage	9.4e-27	67.9
QAV62030.1\|2973932_2975228_+	DUF3596 domain-containing protein	Q20GI2	Phage_258-320	3.0e-180	68.9

DBSCAN-SWA_9

3062215 : 3072414

Escherichia_phage(37.5%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAV62105.1\|3062215_3063220_+	NAD-dependent epimerase	A0A2K9L4U8	Tupanvirus	2.5e-33	29.0
QAV62106.1\|3064695_3065862_-	UDP-glucose 6-dehydrogenase	A0A1J0FA55	Only_Syngen_Nebraska_virus	1.2e-111	53.5
QAV62107.1\|3066115_3067522_-	NADP-dependent phosphogluconate dehydrogenase	M4QQM4	Ostreococcus_lucimarinus_virus	5.2e-37	28.3
QAV62108.1\|3067657_3068209_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	9.1e-54	54.4
QAV62109.1\|3068216_3069107_-	dTDP-4-dehydrorhamnose reductase	A0A1D7XFA3	Escherichia_phage	5.3e-27	31.0
QAV62110.1\|3069119_3069986_-	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	2.8e-110	66.3
QAV62111.1\|3070001_3071066_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	4.9e-104	54.7
QAV62112.1\|3071145_3071376_-	hypothetical protein	NA	NA	NA	NA
QAV62113.1\|3071433_3072414_-\|transposase	IS5-like element ISKpn26 family transposase	A0A077SK28	Escherichia_phage	1.8e-185	99.1

DBSCAN-SWA_10

4093357 : 4130844

Erwinia_phage(33.33%)

head,portal,capsid,plate,lysis,tail,tRNA,integrase,holin,terminase

attL 4093326:4093354|attR 4142629:4142657

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4093326:4093354	attL	NA	NA	NA	NA
QAV63004.1\|4093357_4094371_-\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	5.3e-108	58.6
QAV63005.1\|4094607_4094823_+	30S ribosomal protein S21	NA	NA	NA	NA
QAV63006.1\|4094938_4096684_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	1.4e-76	39.0
QAV63007.1\|4096837_4098682_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	8.4e-35	33.7
QAV63008.1\|4098784_4099291_-	G/U mismatch-specific DNA glycosylase	NA	NA	NA	NA
QAV63841.1\|4099647_4099866_-	DNA-binding transcriptional regulator	A0A2I8TV89	Erwinia_phage	2.4e-34	88.9
QAV63009.1\|4099931_4101101_-	phage late control D family protein	Q6K1G4	Salmonella_virus	5.1e-171	77.7
QAV63010.1\|4101097_4101562_-\|tail	phage tail protein	A0A218M4I2	Erwinia_phage	1.0e-58	70.8
QAV63011.1\|4101572_4104023_-\|tail	phage tail tape measure protein	Q858U7	Yersinia_virus	1.2e-307	73.7
QAV63012.1\|4104012_4104135_-\|tail	GpE family phage tail protein	O80316	Escherichia_phage	5.9e-14	89.7
QAV63013.1\|4104167_4104491_-\|tail	phage tail assembly protein	A0A0F7LDQ8	Escherichia_phage	2.0e-24	64.0
QAV63014.1\|4104548_4105067_-\|tail	phage major tail tube protein	A0A218M4J0	Erwinia_phage	2.9e-78	81.4
QAV63015.1\|4105079_4106273_-\|tail	phage tail sheath protein	A0A0F7LBW9	Escherichia_phage	2.8e-185	81.1
QAV63016.1\|4106663_4107236_-\|tail	tail fiber assembly protein	K7PMH7	Enterobacteria_phage	2.5e-54	55.7
QAV63842.1\|4109410_4109941_-\|tail	phage tail protein I	Q37841	Escherichia_phage	4.8e-92	87.5
QAV63017.1\|4109933_4110842_-\|plate	baseplate assembly protein	S4TNY7	Salmonella_phage	1.6e-135	83.1
QAV63018.1\|4110847_4111198_-\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	1.8e-39	71.6
QAV63019.1\|4111194_4111836_-\|plate	phage baseplate assembly protein V	A0A0M4S6F6	Salmonella_phage	1.0e-96	82.6
QAV63020.1\|4112009_4113191_+	DUF2971 domain-containing protein	NA	NA	NA	NA
QAV63021.1\|4113241_4113694_-	phage virion morphogenesis protein	O80313	Escherichia_phage	3.6e-48	68.0
QAV63022.1\|4113686_4114154_-\|tail	phage tail protein	A0A218M4K6	Erwinia_phage	8.0e-59	69.0
QAV63023.1\|4114116_4114362_-\|holin	holin	S4TNY4	Salmonella_phage	1.1e-27	75.3
QAV63843.1\|4114249_4114666_-\|lysis	LysB family phage lysis regulatory protein	A0A218M4K2	Erwinia_phage	9.3e-43	68.0
QAV63024.1\|4114665_4115097_-	lysA protein	A0A218M4L6	Erwinia_phage	6.2e-58	77.6
QAV63025.1\|4115093_4115606_-	lysozyme	A0A218M4K3	Erwinia_phage	1.0e-83	89.4
QAV63026.1\|4115589_4115811_-	primosomal protein	A0A218M4L5	Erwinia_phage	2.1e-25	72.6
QAV63027.1\|4115801_4116005_-\|tail	phage tail protein	Q858W3	Yersinia_virus	2.1e-24	77.6
QAV63028.1\|4116004_4116511_-\|head	head completion/stabilization protein	O80306	Escherichia_phage	3.4e-63	72.0
QAV63029.1\|4116610_4117366_-\|terminase	terminase	Q6K1I5	Salmonella_virus	1.4e-73	64.1
QAV63030.1\|4117369_4118437_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	9.7e-169	83.6
QAV63031.1\|4118497_4119352_-\|capsid	GPO family capsid scaffolding protein	S4TP53	Salmonella_phage	8.4e-115	73.6
QAV63032.1\|4119517_4121287_+\|terminase	terminase ATPase subunit family protein	A0A0M4RE51	Salmonella_phage	2.1e-301	84.9
QAV63033.1\|4121288_4122314_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	1.5e-166	82.4
QAV63034.1\|4122523_4122679_+	acetyl xylan esterase	NA	NA	NA	NA
QAV63035.1\|4122626_4123277_-	hypothetical protein	NA	NA	NA	NA
QAV63036.1\|4123300_4123558_-	hypothetical protein	J9Q7T5	Salmonella_phage	8.9e-20	55.0
QAV63037.1\|4123703_4124435_-	hypothetical protein	Q37850	Escherichia_phage	7.2e-131	95.5
QAV63038.1\|4124517_4124958_-	DinI family protein	A0A218M4I0	Erwinia_phage	4.0e-68	95.6
QAV63039.1\|4125075_4127292_-	replication endonuclease	A0A218M4H2	Erwinia_phage	0.0e+00	94.0
QAV63040.1\|4127293_4127515_-	TraR/DksA family transcriptional regulator	Q6K1F5	Salmonella_virus	1.1e-29	87.5
QAV63041.1\|4127514_4127742_-	DUF2732 domain-containing protein	A0A0M3UL87	Salmonella_phage	1.1e-26	92.0
QAV63042.1\|4127809_4128148_-	hypothetical protein	A0A218M4I7	Erwinia_phage	8.0e-53	92.9
QAV63043.1\|4128111_4128312_-	DUF2724 domain-containing protein	Q6K1F7	Salmonella_virus	1.1e-30	93.9
QAV63044.1\|4128319_4128829_-	phage regulatory CII family protein	A0A0M4QWN1	Salmonella_phage	6.4e-86	94.7
QAV63045.1\|4128859_4129123_-	hypothetical protein	A0A218M4I5	Erwinia_phage	2.1e-40	93.1
QAV63046.1\|4129258_4129846_+	phage repressor protein CI	A0A218M4J1	Erwinia_phage	1.3e-66	64.9
QAV63047.1\|4129845_4130844_+\|integrase	site-specific integrase	A0A218M4I3	Erwinia_phage	2.7e-181	92.4
4142629:4142657	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP035386

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP035387

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP035385

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection