CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035370	Staphylococcus aureus strain LAC plasmid unnamed, complete sequence	0 crisprs	NA	0	0	0	0
CP035369	Staphylococcus aureus strain LAC chromosome, complete genome	9 crisprs	NA	11	4	0	0

Cas Category Instructions

Results visualization

1. CP035369

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CRISPR-Cas detection and classification

Crispr_ID: CP035369_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035369_1

79704-79782

Orphan

Consensus_repeat	Method
TGCAGGTTGGCGGGGCCCCAACA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035369_1

>merge|CP035369|1|79704-79782|CRISPRCasFinder
TGCAGGTTGGCGGGGCCCCAACACAGAAGCTGACGAAAAGTCAGCTTACGATAATGTGCAGGTTGGCGGGGCCCCAACA

>CP035369|1|1|79704-79782|CRISPRCasFinder
TGCAGGTTGGCGGGGCCCCAACA	CAGAAGCTGACGAAAAGTCAGCTTACGATAATG
TGCAGGTTGGCGGGGCCCCAACA

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Crispr_ID: CP035369_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035369_2

1155206-1155514

Orphan

Consensus_repeat	Method
CCAACTTGCANNNTNTNNNNAGCTGNCTTT	CRT
CCAGCCTCTGTGTTGGGGCCCCG	CRISPRCasFinder

4 spacers

The CRISPR arrays of CP035369_2

>merge|CP035369|2|1155206-1155514|CRT,CRISPRCasFinder
CCAAATTGAAATTATCCTACTGCTGTCTTTTTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACCCCAACTTGCACACTATTGTAAGCTGACTTTTCGCCAGCTTCTGTGTTGGGGCCCCGCCAACTTGCATTGTCTGTAGAAATTGAGGAGCTAATTTCTCTGTGTCGGGGCTCCACCCCAACTTGCACACTATTGTAAGCTGACTTTCCGCCAGCCTCTGTGTTGGGGCCCCGCCAACTTGCACACTATTGTAAGCTGACTTTCCACCAGCCTCTGTGTTGGGGCCCCG

>CP035369|2|1|1155206-1155488|CRT
CCAAATTGAAATTATCCTACTGCTGTCTTT	TTGGGAGTGGGACAGAAATGATATTTTCGCAAAATTTATTTCGTCGTCCCACC
CCAACTTGCACACTATTGTAAGCTGACTTT	TCGCCAGCTTCTGTGTTGGGGCCCCG
CCAACTTGCATTGTCTGTAGAAATTGAGGA	GCTAATTTCTCTGTGTCGGGGCTCCACC
CCAACTTGCACACTATTGTAAGCTGACTTT	CCGCCAGCCTCTGTGTTGGGGCCCCG
CCAACTTGCACACTATTGTAAGCTGACTTT

>CP035369|2|2|1155436-1155514|CRISPRCasFinder
CCAGCCTCTGTGTTGGGGCCCCG	CCAACTTGCACACTATTGTAAGCTGACTTTCCA
CCAGCCTCTGTGTTGGGGCCCCG

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Crispr_ID: CP035369_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035369_3

1218218-1218299

Orphan

Consensus_repeat	Method
TTCTACAGGCAATGCAAGTTGGGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035369_3

>merge|CP035369|3|1218218-1218299|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGGATGGGCCCCAACAAAGAGAAATTGGATTCCCAATTTCTACAGACAATGCAAGTTGGGG

>CP035369|3|3|1218218-1218299|CRISPRCasFinder
TTCTACAGGCAATGCAAGTTGGGG	ATGGGCCCCAACAAAGAGAAATTGGATTCCCAAT
TTCTACAGACAATGCAAGTTGGGG

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Crispr_ID: CP035369_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035369_4

1261425-1261510

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035369_4

>merge|CP035369|4|1261425-1261510|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>CP035369|4|4|1261425-1261510|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACACAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

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Crispr_ID: CP035369_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035369_5

1432711-1432803

Orphan

Consensus_repeat	Method
TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035369_5

>merge|CP035369|5|1432711-1432803|CRISPRCasFinder
TAGCATCCAACTGCGTTCCTCTTCATCTTTAGCGATTAGAGGCTTTTATGCAGTTGTGCCTTAGCATCCAACTGCGTTCCTCTTCACCTTTAG

>CP035369|5|5|1432711-1432803|CRISPRCasFinder
TAGCATCCAACTGCGTTCCTCTTCATCTTTAG	CGATTAGAGGCTTTTATGCAGTTGTGCCT
TAGCATCCAACTGCGTTCCTCTTCACCTTTAG

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Crispr_ID: CP035369_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035369_6

1677689-1677790

Orphan

Consensus_repeat	Method
CAAATTTAATACTCAATTCATATA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035369_6

>merge|CP035369|6|1677689-1677790|CRISPRCasFinder
CAAATTTAATACTCAATTCATATATAGCTTTGATTTAAAAACTGATTTTTATAAACCTATAGAACTGTAATTTACTTTCAAATTTAATACTCAATTCATAAA

>CP035369|6|6|1677689-1677790|CRISPRCasFinder
CAAATTTAATACTCAATTCATATA	TAGCTTTGATTTAAAAACTGATTTTTATAAACCTATAGAACTGTAATTTACTTT
CAAATTTAATACTCAATTCATAAA

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Crispr_ID: CP035369_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035369_7

2154507-2154680

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAG	PILER-CR
TTACAATAATGTGCAAGTTGGCGG	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP035369_7

>merge|CP035369|7|2154507-2154680|PILER-CR,CRISPRCasFinder
TTGGCGAGGCCCCAACATAAAGAATTTCGAAAAGAAATTCTACAAACAATGCAAGTTGGCGGGGCCCCAACAAAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGGTTACAATAATGTGCAAGTTGGGGT

>CP035369|7|1|2154507-2154651|PILER-CR
TTGGCGAGGCCCCAACATAAAGAATTTCGAAAAGAAATTCTACAAACAATGCA	AGTTGGCGGGGCCCCAA
CAAAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCC	CAACATAGAAGCTGGC
GGAAAG

>CP035369|7|7|2154601-2154680|CRISPRCasFinder
TTACAATAATGTGCAAGTTGGCGG	GGCCCCAACATAGAAGCTGGCGGAAAGTCAGG
TTACAATAATGTGCAAGTTGGGGT

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Crispr_ID: CP035369_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035369_8

2595764-2595957

Orphan

Consensus_repeat	Method
TGCAAGTTGGCGGGGCCCCAACA	CRT

3 spacers

The CRISPR arrays of CP035369_8

>merge|CP035369|8|2595764-2595957|CRT
TACAAGTTGGCGGGGCCCCAACACAGAAGCTGACAGAAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAATTTCAAAAAGAAATTCTACAGACAATGCAAGTTGGGGAACGGGGCCCCAACACAGAAGGTGACGAAAAGTCAGCATACAATAATGTGCAAGTTGGCGGGGCCCCAACA

>CP035369|8|2|2595764-2595957|CRT
TACAAGTTGGCGGGGCCCCAACA	CAGAAGCTGACAGAAAGTCAGCTTACAATAATG
TGCAAGTTGGCGGGGCCCCAACA	TAGAGAATTTCAAAAAGAAATTCTACAGACAATGCA
AGTTGGGGAACGGGGCCCCAACA	CAGAAGGTGACGAAAAGTCAGCATACAATAATG
TGCAAGTTGGCGGGGCCCCAACA

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Crispr_ID: CP035369_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035369_9

2719725-2719875

Orphan

Consensus_repeat	Method
TGCATAAGAGCCCCTAACAACTAAAGTT	CRISPRCasFinder

2 spacers

The CRISPR arrays of CP035369_9

>merge|CP035369|9|2719725-2719875|CRISPRCasFinder
TAGAAAGAAGCCCCTAACAACTAAAGTTGAAAAATAGAGGAACACAGTTGGATGCTACGCATCAACTGCATAAGAGCCCCTAACAACTAAAGTTTAAAAGTAGGAGCGCCTGCGCTAAGCGCATGCATAAGAGCCCCTAACAACTAAAGTT

>CP035369|9|8|2719725-2719875|CRISPRCasFinder
TAGAAAGAAGCCCCTAACAACTAAAGTT	GAAAAATAGAGGAACACAGTTGGATGCTACGCATCAAC
TGCATAAGAGCCCCTAACAACTAAAGTT	TAAAAGTAGGAGCGCCTGCGCTAAGCGCA
TGCATAAGAGCCCCTAACAACTAAAGTT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP035369_3	3.1\|1218242\|34\|CP035369\|CRISPRCasFinder	1218242-1218275	34	CP035369.1	640090-640123	0	1.0
CP035369_3	3.1\|1218242\|34\|CP035369\|CRISPRCasFinder	1218242-1218275	34	CP035369.1	729282-729315	0	1.0
CP035369_7	7.1\|2154560\|17\|CP035369\|PILER-CR	2154560-2154576	17	CP035369.1	1266849-1266865	0	1.0
CP035369_7	7.1\|2154560\|17\|CP035369\|PILER-CR	2154560-2154576	17	CP035369.1	1266904-1266920	0	1.0
CP035369_7	7.1\|2154560\|17\|CP035369\|PILER-CR	2154560-2154576	17	CP035369.1	1798186-1798202	0	1.0
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	68822-68837	0	1.0
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	68880-68895	0	1.0
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	640062-640077	0	1.0
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	724931-724946	0	1.0
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	729328-729343	0	1.0
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	937453-937468	0	1.0
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	1038081-1038096	0	1.0
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	1217945-1217960	0	1.0
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	1716411-1716426	0	1.0
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	2319982-2319997	0	1.0
CP035369_8	8.2\|2595843\|36\|CP035369\|CRT	2595843-2595878	36	CP035369.1	937506-937541	0	1.0
CP035369_1	1.1\|79727\|33\|CP035369\|CRISPRCasFinder	79727-79759	33	CP035369.1	414812-414844	1	0.97
CP035369_1	1.1\|79727\|33\|CP035369\|CRISPRCasFinder	79727-79759	33	CP035369.1	729328-729360	1	0.97
CP035369_1	1.1\|79727\|33\|CP035369\|CRISPRCasFinder	79727-79759	33	CP035369.1	937453-937485	1	0.97
CP035369_1	1.1\|79727\|33\|CP035369\|CRISPRCasFinder	79727-79759	33	CP035369.1	1261412-1261444	1	0.97
CP035369_1	1.1\|79727\|33\|CP035369\|CRISPRCasFinder	79727-79759	33	CP035369.1	2319965-2319997	1	0.97
CP035369_2	2.2\|1155319\|26\|CP035369\|CRT	1155319-1155344	26	CP035369.1	1261399-1261424	1	0.962
CP035369_4	4.1\|1261455\|26\|CP035369\|CRISPRCasFinder	1261455-1261480	26	CP035369.1	1298518-1298543	1	0.962
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	236246-236261	1	0.938
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	414829-414844	1	0.938
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	683275-683290	1	0.938
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	941421-941436	1	0.938
CP035369_7	7.2\|2154630\|16\|CP035369\|PILER-CR	2154630-2154645	16	CP035369.1	2506585-2506600	1	0.938
CP035369_1	1.1\|79727\|33\|CP035369\|CRISPRCasFinder	79727-79759	33	CP035369.1	640045-640077	2	0.939
CP035369_2	2.2\|1155319\|26\|CP035369\|CRT	1155319-1155344	26	CP035369.1	1716431-1716456	2	0.923
CP035369_2	2.4\|1155433\|26\|CP035369\|CRT	1155433-1155458	26	CP035369.1	1298518-1298543	2	0.923
CP035369_2	2.5\|1155459\|33\|CP035369\|CRISPRCasFinder	1155459-1155491	33	CP035369.1	1217938-1217970	2	0.939
CP035369_4	4.1\|1261455\|26\|CP035369\|CRISPRCasFinder	1261455-1261480	26	CP035369.1	1298462-1298487	2	0.923
CP035369_8	8.1\|2595787\|33\|CP035369\|CRT	2595787-2595819	33	CP035369.1	729328-729360	2	0.939
CP035369_8	8.1\|2595787\|33\|CP035369\|CRT	2595787-2595819	33	CP035369.1	937453-937485	2	0.939
CP035369_8	8.1\|2595787\|33\|CP035369\|CRT	2595787-2595819	33	CP035369.1	1261412-1261444	2	0.939
CP035369_8	8.1\|2595787\|33\|CP035369\|CRT	2595787-2595819	33	CP035369.1	2319965-2319997	2	0.939
CP035369_8	8.2\|2595843\|36\|CP035369\|CRT	2595843-2595878	36	CP035369.1	68921-68956	2	0.944
CP035369_8	8.2\|2595843\|36\|CP035369\|CRT	2595843-2595878	36	CP035369.1	414870-414905	2	0.944
CP035369_8	8.3\|2595902\|33\|CP035369\|CRT	2595902-2595934	33	CP035369.1	640045-640077	2	0.939
CP035369_8	8.3\|2595902\|33\|CP035369\|CRT	2595902-2595934	33	CP035369.1	729328-729360	2	0.939
CP035369_8	8.3\|2595902\|33\|CP035369\|CRT	2595902-2595934	33	CP035369.1	937453-937485	2	0.939
CP035369_8	8.3\|2595902\|33\|CP035369\|CRT	2595902-2595934	33	CP035369.1	1261412-1261444	2	0.939
CP035369_8	8.3\|2595902\|33\|CP035369\|CRT	2595902-2595934	33	CP035369.1	2319965-2319997	2	0.939

1. spacer 3.1|1218242|34|CP035369|CRISPRCasFinder matches to position: 640090-640123, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

2. spacer 3.1|1218242|34|CP035369|CRISPRCasFinder matches to position: 729282-729315, mismatch: 0, identity: 1.0

atgggccccaacaaagagaaattggattcccaat	CRISPR spacer
atgggccccaacaaagagaaattggattcccaat	Protospacer
**********************************

3. spacer 7.1|2154560|17|CP035369|PILER-CR matches to position: 1266849-1266865, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

4. spacer 7.1|2154560|17|CP035369|PILER-CR matches to position: 1266904-1266920, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

5. spacer 7.1|2154560|17|CP035369|PILER-CR matches to position: 1798186-1798202, mismatch: 0, identity: 1.0

aagaatttcgaaaagaa	CRISPR spacer
aagaatttcgaaaagaa	Protospacer
*****************

6. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 68822-68837, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

7. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 68880-68895, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

8. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 640062-640077, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

9. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 724931-724946, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

10. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 729328-729343, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

11. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 937453-937468, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

12. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 1038081-1038096, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

13. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 1217945-1217960, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

14. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 1716411-1716426, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

15. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 2319982-2319997, mismatch: 0, identity: 1.0

tcagcttacaataatg	CRISPR spacer
tcagcttacaataatg	Protospacer
****************

16. spacer 8.2|2595843|36|CP035369|CRT matches to position: 937506-937541, mismatch: 0, identity: 1.0

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcaaaaagaaattctacagacaatgca	Protospacer
************************************

17. spacer 1.1|79727|33|CP035369|CRISPRCasFinder matches to position: 414812-414844, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttactataatg	Protospacer
************************** ******

18. spacer 1.1|79727|33|CP035369|CRISPRCasFinder matches to position: 729328-729360, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

19. spacer 1.1|79727|33|CP035369|CRISPRCasFinder matches to position: 937453-937485, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

20. spacer 1.1|79727|33|CP035369|CRISPRCasFinder matches to position: 1261412-1261444, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

21. spacer 1.1|79727|33|CP035369|CRISPRCasFinder matches to position: 2319965-2319997, mismatch: 1, identity: 0.97

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
**************************.******

22. spacer 2.2|1155319|26|CP035369|CRT matches to position: 1261399-1261424, mismatch: 1, identity: 0.962

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctgtgttggggccccg	Protospacer
***.**********************

23. spacer 4.1|1261455|26|CP035369|CRISPRCasFinder matches to position: 1298518-1298543, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
******************** *****

24. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 236246-236261, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagctttcaataatg	Protospacer
******* ********

25. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 414829-414844, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttactataatg	Protospacer
********* ******

26. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 683275-683290, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

27. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 941421-941436, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaaaaatg	Protospacer
*********** ****

28. spacer 7.2|2154630|16|CP035369|PILER-CR matches to position: 2506585-2506600, mismatch: 1, identity: 0.938

tcagcttacaataatg	CRISPR spacer
tcagcttacaacaatg	Protospacer
***********.****

29. spacer 1.1|79727|33|CP035369|CRISPRCasFinder matches to position: 640045-640077, mismatch: 2, identity: 0.939

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
****** *******************.******

30. spacer 2.2|1155319|26|CP035369|CRT matches to position: 1716431-1716456, mismatch: 2, identity: 0.923

tcgccagcttctgtgttggggccccg	CRISPR spacer
tcgtcagcttctttgttggggccccg	Protospacer
***.******** *************

31. spacer 2.4|1155433|26|CP035369|CRT matches to position: 1298518-1298543, mismatch: 2, identity: 0.923

ccgccagcctctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** **.*****************

32. spacer 2.5|1155459|33|CP035369|CRISPRCasFinder matches to position: 1217938-1217970, mismatch: 2, identity: 0.939

ccaacttgcacactattgtaagctgactttcca	CRISPR spacer
ccaacttgcacattattgtaagctgacttacca	Protospacer
************.**************** ***

33. spacer 4.1|1261455|26|CP035369|CRISPRCasFinder matches to position: 1298462-1298487, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
*************.****** *****

34. spacer 8.1|2595787|33|CP035369|CRT matches to position: 729328-729360, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

35. spacer 8.1|2595787|33|CP035369|CRT matches to position: 937453-937485, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

36. spacer 8.1|2595787|33|CP035369|CRT matches to position: 1261412-1261444, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

37. spacer 8.1|2595787|33|CP035369|CRT matches to position: 2319965-2319997, mismatch: 2, identity: 0.939

cagaagctgacagaaagtcagcttacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
***********..********************

38. spacer 8.2|2595843|36|CP035369|CRT matches to position: 68921-68956, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaggaaattctacagacaatgca	Protospacer
***********.***.********************

39. spacer 8.2|2595843|36|CP035369|CRT matches to position: 414870-414905, mismatch: 2, identity: 0.944

tagagaatttcaaaaagaaattctacagacaatgca	CRISPR spacer
tagagaatttcgaaaagaaattctacaggcaatgca	Protospacer
***********.****************.*******

40. spacer 8.3|2595902|33|CP035369|CRT matches to position: 640045-640077, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagatgacgaaaagtcagcttacaataatg	Protospacer
******.*************** **********

41. spacer 8.3|2595902|33|CP035369|CRT matches to position: 729328-729360, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

42. spacer 8.3|2595902|33|CP035369|CRT matches to position: 937453-937485, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

43. spacer 8.3|2595902|33|CP035369|CRT matches to position: 1261412-1261444, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

44. spacer 8.3|2595902|33|CP035369|CRT matches to position: 2319965-2319997, mismatch: 2, identity: 0.939

cagaaggtgacgaaaagtcagcatacaataatg	CRISPR spacer
cagaagctgacgaaaagtcagcttacaataatg	Protospacer
****** *************** **********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035369_2	2.1\|1155236\|53\|CP035369\|CRT	1155236-1155288	53	MG543995	Staphylococcus phage UPMK_1, partial genome	76246-76298	4	0.925
CP035369_2	2.2\|1155319\|26\|CP035369\|CRT	1155319-1155344	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
CP035369_4	4.1\|1261455\|26\|CP035369\|CRISPRCasFinder	1261455-1261480	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
CP035369_4	4.1\|1261455\|26\|CP035369\|CRISPRCasFinder	1261455-1261480	26	NZ_CP034332	Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence	3359-3384	5	0.808
CP035369_4	4.1\|1261455\|26\|CP035369\|CRISPRCasFinder	1261455-1261480	26	NZ_CP022605	Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence	715511-715536	5	0.808
CP035369_1	1.1\|79727\|33\|CP035369\|CRISPRCasFinder	79727-79759	33	NC_021536	Synechococcus phage S-IOM18 genomic sequence	159745-159777	10	0.697

1. spacer 2.1|1155236|53|CP035369|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ttgggagtgggacagaaatgatattttcgcaaaatttatttcgtcgtcccacc	CRISPR spacer
aagggagtgggacagaaatgatagtttctcaaaatttatttcgtcgtcccacc	Protospacer
  ********************* **** ************************

2. spacer 2.2|1155319|26|CP035369|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

tcgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

3. spacer 4.1|1261455|26|CP035369|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.*****************

4. spacer 4.1|1261455|26|CP035369|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
gtaggcccagacacagaagctggcgg	Protospacer
  .***** .****************

5. spacer 4.1|1261455|26|CP035369|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcgg	CRISPR spacer
tcagggccaaacacagaagctggcgg	Protospacer
. .** ** *****************

6. spacer 1.1|79727|33|CP035369|CRISPRCasFinder matches to NC_021536 (Synechococcus phage S-IOM18 genomic sequence) position: , mismatch: 10, identity: 0.697

cagaagctgacgaaaagtcagcttacgataatg	CRISPR spacer
aggtgcttgacgaaaactcaccttacgataaaa	Protospacer
 .* . .********* *** ********** .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage