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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035395 Bacillus subtilis strain SRCM103697 chromosome, complete genome 1 crisprs csa3,RT,cas3,DEDDh,WYL,DinG 0 1 12 0
CP035396 Bacillus subtilis strain SRCM103697 plasmid unnamed1, complete sequence 0 crisprs NA 0 0 0 0

Results visualization

1. CP035395
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035395_2 2917797-2917904 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035395_2 2.1|2917821|60|CP035395|CRISPRCasFinder 2917821-2917880 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
CP035395_2 2.1|2917821|60|CP035395|CRISPRCasFinder 2917821-2917880 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
CP035395_2 2.1|2917821|60|CP035395|CRISPRCasFinder 2917821-2917880 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
CP035395_2 2.1|2917821|60|CP035395|CRISPRCasFinder 2917821-2917880 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
CP035395_2 2.1|2917821|60|CP035395|CRISPRCasFinder 2917821-2917880 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
CP035395_2 2.1|2917821|60|CP035395|CRISPRCasFinder 2917821-2917880 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
CP035395_2 2.1|2917821|60|CP035395|CRISPRCasFinder 2917821-2917880 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
CP035395_2 2.1|2917821|60|CP035395|CRISPRCasFinder 2917821-2917880 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
CP035395_2 2.1|2917821|60|CP035395|CRISPRCasFinder 2917821-2917880 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|2917821|60|CP035395|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|2917821|60|CP035395|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|2917821|60|CP035395|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|2917821|60|CP035395|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|2917821|60|CP035395|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|2917821|60|CP035395|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|2917821|60|CP035395|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|2917821|60|CP035395|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|2917821|60|CP035395|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 680079 : 688445 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_2 714094 : 724994 7 Erysipelothrix_phage(33.33%) NA NA
DBSCAN-SWA_3 1197588 : 1245959 57 Planktothrix_phage(22.22%) tRNA,transposase,coat NA
DBSCAN-SWA_4 1276911 : 1363275 96 uncultured_Caudovirales_phage(26.19%) portal,protease,terminase,transposase,coat,holin,tail,plate,tRNA NA
DBSCAN-SWA_5 1783005 : 1832710 52 Bacillus_phage(50.0%) protease,transposase,terminase,coat,tRNA NA
DBSCAN-SWA_6 1931081 : 1988178 59 Bacillus_phage(57.69%) holin,transposase,integrase attL 1915387:1915402|attR 1963720:1963735
DBSCAN-SWA_7 2200626 : 2206721 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_8 2588765 : 2655036 58 Faustovirus(10.0%) protease,integrase,tRNA,coat attL 2643899:2643958|attR 2655299:2655361
DBSCAN-SWA_9 3078169 : 3174878 116 Bacillus_phage(34.78%) protease,portal,capsid,transposase,coat,terminase,holin,tail,head,plate,integrase attL 3118866:3118884|attR 3156146:3156164
DBSCAN-SWA_10 3267701 : 3317948 63 Bacillus_phage(72.5%) protease,portal,capsid,terminase,holin,tail,head NA
DBSCAN-SWA_11 3684585 : 3764994 79 Bacillus_phage(25.0%) protease,transposase,coat,bacteriocin,tRNA NA
DBSCAN-SWA_12 3959957 : 4015715 51 Klosneuvirus(20.0%) holin,protease,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage