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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035403 Bacillus subtilis strain SRCM103581 chromosome, complete genome 2 crisprs csa3,cas3,DEDDh,WYL,DinG 0 1 13 0

Results visualization

1. CP035403
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035403_2 3026887-3026994 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035403_3 3583683-3583896 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035403_2 2.1|3026911|60|CP035403|CRISPRCasFinder 3026911-3026970 60 NZ_CP024037 Bacillus aryabhattai strain K13 plasmid unnamed2 10417-10476 7 0.883
CP035403_2 2.1|3026911|60|CP035403|CRISPRCasFinder 3026911-3026970 60 NZ_CP026740 Bacillus megaterium strain YC4-R4 plasmid unnamed4 70764-70823 7 0.883
CP035403_2 2.1|3026911|60|CP035403|CRISPRCasFinder 3026911-3026970 60 NC_017139 Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence 1318-1377 7 0.883
CP035403_2 2.1|3026911|60|CP035403|CRISPRCasFinder 3026911-3026970 60 NZ_CP010587 Bacillus megaterium Q3 plasmid p1, complete sequence 838-897 7 0.883
CP035403_2 2.1|3026911|60|CP035403|CRISPRCasFinder 3026911-3026970 60 NZ_CP023319 Bacillus megaterium strain A plasmid p2, complete sequence 75825-75884 7 0.883
CP035403_2 2.1|3026911|60|CP035403|CRISPRCasFinder 3026911-3026970 60 NC_020451 Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence 1960-2019 9 0.85
CP035403_2 2.1|3026911|60|CP035403|CRISPRCasFinder 3026911-3026970 60 NZ_CP015440 Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence 64773-64832 12 0.8
CP035403_2 2.1|3026911|60|CP035403|CRISPRCasFinder 3026911-3026970 60 NZ_CP033045 Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence 483791-483850 13 0.783
CP035403_2 2.1|3026911|60|CP035403|CRISPRCasFinder 3026911-3026970 60 NZ_LR134399 Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence 57361-57420 14 0.767

1. spacer 2.1|3026911|60|CP035403|CRISPRCasFinder matches to NZ_CP024037 (Bacillus aryabhattai strain K13 plasmid unnamed2) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

2. spacer 2.1|3026911|60|CP035403|CRISPRCasFinder matches to NZ_CP026740 (Bacillus megaterium strain YC4-R4 plasmid unnamed4) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

3. spacer 2.1|3026911|60|CP035403|CRISPRCasFinder matches to NC_017139 (Bacillus megaterium WSH-002 plasmid WSH-002_p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

4. spacer 2.1|3026911|60|CP035403|CRISPRCasFinder matches to NZ_CP010587 (Bacillus megaterium Q3 plasmid p1, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

5. spacer 2.1|3026911|60|CP035403|CRISPRCasFinder matches to NZ_CP023319 (Bacillus megaterium strain A plasmid p2, complete sequence) position: , mismatch: 7, identity: 0.883

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatatttta-aagtggcggt	Protospacer
******************************************  *****   * ****.*

6. spacer 2.1|3026911|60|CP035403|CRISPRCasFinder matches to NC_020451 (Vibrio coralliilyticus strain ATCC BAA-450 plasmid, complete sequence) position: , mismatch: 9, identity: 0.85

cagcttggaaggctgaggttttaccactaaactacacccgcaatttttatttggggcgat	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcattttagttatggcccggg	Protospacer
****************************************** ***   * ***  **. 

7. spacer 2.1|3026911|60|CP035403|CRISPRCasFinder matches to NZ_CP015440 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_2, complete sequence) position: , mismatch: 12, identity: 0.8

cagcttggaaggctgaggttttaccactaaactacacccgca-------atttttatttg	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcataataatatataccattg	Protospacer
******************************************       ** * .  ***

8. spacer 2.1|3026911|60|CP035403|CRISPRCasFinder matches to NZ_CP033045 (Bacillus foraminis strain Bac44 plasmid unnamed, complete sequence) position: , mismatch: 13, identity: 0.783

cagcttggaaggctgaggttttaccactaaactacacccgc--------aatttttattt	CRISPR spacer
cagcttggaaggctgaggttttaccactaaactacacccgcatggttaaaagttttgcca	Protospacer
*****************************************        ** ****... 

9. spacer 2.1|3026911|60|CP035403|CRISPRCasFinder matches to NZ_LR134399 (Listeria monocytogenes strain NCTC7974 plasmid 2, complete sequence) position: , mismatch: 14, identity: 0.767

cagcttggaaggctgaggttttaccactaaactacacccgc---------aatttttatt	CRISPR spacer
cagcttggaaggctgtagttttaccactaaactacacccgcatagtaagtagttcttagt	Protospacer
*************** .************************         *.**.*** *

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 571080 : 578371 11 Staphylococcus_phage(33.33%) integrase attL 572848:572863|attR 579362:579377
DBSCAN-SWA_2 685187 : 757878 88 uncultured_Caudovirales_phage(30.61%) capsid,tail,portal,holin,tRNA,transposase,integrase,protease,terminase attL 696749:696769|attR 735298:735318
DBSCAN-SWA_3 778375 : 786741 8 Synechococcus_phage(50.0%) NA NA
DBSCAN-SWA_4 825600 : 888321 53 Corynebacterium_phage(16.67%) transposase,coat NA
DBSCAN-SWA_5 1292315 : 1326428 41 Planktothrix_phage(40.0%) tRNA,coat NA
DBSCAN-SWA_6 1359706 : 1467687 114 Bacillus_phage(21.74%) plate,tail,portal,holin,transposase,coat,protease,terminase NA
DBSCAN-SWA_7 1495650 : 1554574 60 Bacillus_phage(20.0%) transposase,integrase,protease attL 1522650:1522709|attR 1554540:1555908
DBSCAN-SWA_8 1880760 : 1887310 6 Bacillus_phage(50.0%) NA NA
DBSCAN-SWA_9 2253981 : 2260276 8 Staphylococcus_phage(66.67%) NA NA
DBSCAN-SWA_10 2485256 : 2601047 128 Bacillus_phage(27.5%) capsid,plate,tail,portal,holin,transposase,coat,terminase NA
DBSCAN-SWA_11 2680190 : 2734029 56 uncultured_Mediterranean_phage(12.5%) protease,tRNA,coat NA
DBSCAN-SWA_12 3686613 : 3772024 82 Bacillus_phage(22.22%) bacteriocin,tRNA,transposase,protease,coat NA
DBSCAN-SWA_13 4093715 : 4100256 10 Streptococcus_phage(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage