CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP026165	Klebsiella pneumoniae strain F81 plasmid pF81_1, complete sequence	0 crisprs	DEDDh	0	1
CP026164	Klebsiella pneumoniae strain F81 chromosome, complete genome	3 crisprs	csa3,WYL,cas3,DEDDh,DinG	1	5
CP026166	Klebsiella pneumoniae strain F81 plasmid pF81_2, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

68 : 110667

117

Salmonella_phage(89.0%)

tail,integrase,capsid,terminase

attL 45728:45743|attR 57041:57056

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX23583.1\|68_380_-	hypothetical protein	J9Q7T7	Salmonella_phage	1.8e-30	67.0
QAX23584.1\|516_729_-	hypothetical protein	J9Q804	Salmonella_phage	9.9e-25	72.9
QAX23585.1\|741_960_-	hypothetical protein	J9Q6K7	Salmonella_phage	2.9e-27	81.9
QAX23586.1\|975_1236_-	hypothetical protein	NA	NA	NA	NA
QAX23587.1\|1824_2046_+	hypothetical protein	NA	NA	NA	NA
QAX23588.1\|2504_3731_-	hypothetical protein	J9Q803	Salmonella_phage	9.6e-120	54.5
QAX23589.1\|3901_4219_-	hypothetical protein	J9Q750	Salmonella_phage	4.1e-43	75.2
QAX23590.1\|4417_4846_-	S-(hydroxymethyl)glutathione synthase	NA	NA	NA	NA
QAX23591.1\|5119_5479_-	hypothetical protein	NA	NA	NA	NA
QAX23698.1\|5725_5989_-	hypothetical protein	J9Q7T5	Salmonella_phage	1.7e-29	70.5
QAX23592.1\|6140_6842_-	hypothetical protein	J9Q6K2	Salmonella_phage	6.8e-78	69.7
QAX23593.1\|6930_8634_-	DNA modification methylase	J9Q747	Salmonella_phage	0.0e+00	97.9
QAX23594.1\|9005_11075_+	HypX	NA	NA	NA	NA
QAX23595.1\|11243_11738_-	hypothetical protein	J9Q6J9	Salmonella_phage	1.9e-82	98.8
QAX23596.1\|11834_12482_-	ribonuclease HI	J9Q745	Salmonella_phage	6.4e-91	80.1
QAX23597.1\|13054_13288_-	hypothetical protein	J9Q7H5	Salmonella_phage	2.7e-31	84.2
QAX23598.1\|13485_14079_-	phage N-6-adenine-methyltransferase	J9Q7T2	Salmonella_phage	7.2e-97	84.3
QAX23599.1\|14263_15097_-	hypothetical protein	J9Q7Z9	Salmonella_phage	3.0e-64	55.3
QAX23600.1\|15222_15771_-	3'-5' exonuclease	J9Q6J8	Salmonella_phage	3.2e-75	74.4
QAX23601.1\|15767_16349_-	hypothetical protein	A0A1B0VMI8	Pseudomonas_phage	4.2e-33	50.4
QAX23602.1\|16571_16991_-	hypothetical protein	J9Q743	Salmonella_phage	5.5e-51	73.4
QAX23603.1\|17054_17699_-	hypothetical protein	J9Q7H4	Salmonella_phage	2.1e-94	78.0
QAX23604.1\|17698_18175_-	dihydrofolate reductase	J9Q7T1	Salmonella_phage	4.9e-72	79.6
QAX23605.1\|18171_18585_-	hypothetical protein	J9Q7Z8	Salmonella_phage	1.8e-54	76.6
QAX23606.1\|18586_19690_-	thymidylate synthase	J9Q6J6	Salmonella_phage	6.7e-181	80.1
QAX23607.1\|19883_20759_-	phosphoribosyl-ATP pyrophosphohydrolase	J9Q742	Salmonella_phage	1.2e-140	85.1
QAX23608.1\|20836_21979_-	ribonucleotide-diphosphate reductase subunit beta	J9Q7H3	Salmonella_phage	2.0e-212	95.5
QAX23609.1\|22109_24413_-	ribonucleoside-diphosphate reductase subunit alpha	J9Q7T0	Salmonella_phage	0.0e+00	90.9
QAX23610.1\|24488_25058_-	hypothetical protein	J9Q7Z7	Salmonella_phage	1.1e-94	89.9
QAX23611.1\|25067_25814_-	hypothetical protein	J9Q6J5	Salmonella_phage	7.7e-80	62.1
QAX23612.1\|25803_27720_-	exonuclease	J9Q741	Salmonella_phage	1.1e-300	84.8
QAX23613.1\|27716_27950_-	hypothetical protein	J9Q7H1	Salmonella_phage	4.4e-18	66.1
QAX23614.1\|27949_29035_-	exonuclease	J9Q7S9	Salmonella_phage	2.0e-182	84.5
QAX23615.1\|29462_29675_+	XRE family transcriptional regulator	NA	NA	NA	NA
QAX23616.1\|29671_30538_+	hypothetical protein	A0A2I6UHT9	Bacillus_phage	1.1e-05	55.8
QAX23617.1\|30568_32029_-	hypothetical protein	A0A2I6UHU5	Bacillus_phage	5.0e-59	33.3
QAX23618.1\|32543_33188_-	hypothetical protein	J9Q739	Salmonella_phage	1.1e-98	80.7
QAX23619.1\|33306_33498_-	hypothetical protein	NA	NA	NA	NA
QAX23620.1\|33509_34607_+	RepB family plasmid replication initiator protein	J9Q7H0	Salmonella_phage	1.3e-72	45.1
QAX23621.1\|35058_35271_-	hypothetical protein	J9Q7S8	Salmonella_phage	4.3e-28	80.0
QAX23622.1\|35270_35606_-	hypothetical protein	J9Q7Z5	Salmonella_phage	3.6e-37	67.6
QAX23623.1\|35602_35782_-	hypothetical protein	NA	NA	NA	NA
QAX23624.1\|36315_37392_-	recombinase	J9Q736	Salmonella_phage	8.5e-197	96.1
QAX23625.1\|37394_37661_-	hypothetical protein	J9Q7G8	Salmonella_phage	1.7e-34	84.1
QAX23626.1\|37660_38605_-	exonuclease	J9Q7S6	Salmonella_phage	2.8e-172	93.3
QAX23627.1\|38665_39673_-	regulator	J9Q7Z3	Salmonella_phage	6.0e-144	88.0
QAX23699.1\|39792_40224_-	hypothetical protein	J9Q6I8	Salmonella_phage	9.0e-65	90.9
QAX23628.1\|40370_40670_-	hypothetical protein	NA	NA	NA	NA
QAX23629.1\|40680_41100_-	hypothetical protein	A0A291AWZ9	Escherichia_phage	6.3e-47	62.6
QAX23630.1\|41300_41744_-	hypothetical protein	J9Q7S4	Salmonella_phage	1.7e-58	82.3
QAX23631.1\|41740_42910_-	uracil-DNA glycosylase	J9Q7Z2	Salmonella_phage	5.8e-207	92.0
QAX23632.1\|42931_43633_-	hypothetical protein	S5YLC4	Mycobacterium_phage	4.9e-20	37.1
QAX23633.1\|43629_45993_-	DNA polymerase III subunit alpha	J9Q7Z2	Salmonella_phage	0.0e+00	87.0
45728:45743	attL	NA	NA	NA	NA
QAX23634.1\|45967_46171_-	hypothetical protein	J9Q6I7	Salmonella_phage	7.2e-25	80.6
QAX23635.1\|46173_47406_-	porphyrin biosynthesis protein	J9Q733	Salmonella_phage	3.7e-212	86.4
QAX23636.1\|47502_49782_-	porphyrin biosynthesis protein	J9Q7G6	Salmonella_phage	6.5e-247	65.1
QAX23637.1\|50383_50764_+	transcriptional regulator	NA	NA	NA	NA
QAX23638.1\|50758_51859_-\|integrase	integrase	A0A1P8DTG6	Proteus_phage	1.2e-17	28.4
QAX23639.1\|52208_52568_+	hypothetical protein	NA	NA	NA	NA
QAX23640.1\|52632_53043_-	toxin YafO	NA	NA	NA	NA
QAX23641.1\|53052_53670_-	hypothetical protein	NA	NA	NA	NA
QAX23700.1\|53764_54010_-	GrxA family glutaredoxin	A0A2I7SAE2	Vibrio_phage	5.3e-14	47.4
QAX23642.1\|54140_54917_-	phosphate starvation-inducible protein PhoH	W8D063	Erwinia_phage	5.5e-89	65.4
QAX23643.1\|55122_56355_+	hypothetical protein	NA	NA	NA	NA
QAX23644.1\|57605_57905_-	C-type natriuretic protein	J9Q7S1	Salmonella_phage	3.9e-27	66.7
57041:57056	attR	NA	NA	NA	NA
QAX23645.1\|57901_58054_-	hypothetical protein	J9Q7Z1	Salmonella_phage	1.2e-16	82.0
QAX23646.1\|58050_58266_-	hypothetical protein	J9Q6I3	Salmonella_phage	8.5e-24	78.6
QAX23647.1\|58478_58946_-	hypothetical protein	J9Q7R9	Salmonella_phage	8.8e-50	64.6
QAX23648.1\|59025_59814_-	hypothetical protein	J9Q7Z0	Salmonella_phage	2.0e-70	51.1
QAX23649.1\|60109_61276_+	hypothetical protein	NA	NA	NA	NA
QAX23650.1\|61315_62434_-	DNA primase	J9Q720	Salmonella_phage	1.1e-202	91.6
QAX23651.1\|62586_63927_-	DNA helicase	J9Q7G4	Salmonella_phage	7.0e-241	95.7
QAX23652.1\|63991_64717_-	hypothetical protein	J9Q7R8	Salmonella_phage	5.6e-128	88.8
QAX23653.1\|64923_65688_-	hypothetical protein	J9Q7Y9	Salmonella_phage	7.7e-51	41.0
QAX23654.1\|65703_66066_-	hypothetical protein	J9Q7G3	Salmonella_phage	1.2e-43	97.9
QAX23655.1\|66065_66731_-	plasmid stability protein	J9Q7R7	Salmonella_phage	2.9e-102	83.7
QAX23656.1\|66915_67665_-	hypothetical protein	J9Q7Y8	Salmonella_phage	1.6e-16	31.3
QAX23657.1\|67649_68042_-	hypothetical protein	A0A077SLR3	Escherichia_phage	1.0e-14	42.2
QAX23658.1\|68458_68710_-	hypothetical protein	J9Q7R6	Salmonella_phage	2.0e-24	73.5
QAX23659.1\|68712_69405_-	hypothetical protein	J9Q7Y7	Salmonella_phage	2.0e-119	89.1
QAX23660.1\|69418_69742_-	hypothetical protein	J9Q6E7	Salmonella_phage	2.3e-49	95.3
QAX23661.1\|69832_71278_-	endosialidase chaperone	A0A0H4TGH1	Klebsiella_phage	1.8e-40	38.2
QAX23662.1\|71330_83501_-	hypothetical protein	J9Q713	Salmonella_phage	6.3e-30	59.1
QAX23663.1\|83517_84129_-\|tail	tail assembly protein	J9Q7F8	Salmonella_phage	1.1e-76	72.1
QAX23664.1\|84116_84914_-\|tail	phage tail protein	J9Q7R4	Salmonella_phage	7.1e-140	85.3
QAX23665.1\|84906_85605_-\|tail	phage minor tail protein L	J9Q7Y5	Salmonella_phage	1.2e-122	87.4
QAX23666.1\|85691_86027_-\|tail	phage tail protein	J9Q6E1	Salmonella_phage	2.6e-51	84.5
QAX23667.1\|86070_90600_-\|tail	phage tail tape measure protein	J9Q712	Salmonella_phage	0.0e+00	69.1
QAX23668.1\|90607_90841_-	hypothetical protein	J9Q7F7	Salmonella_phage	3.4e-34	93.5
QAX23669.1\|90957_91275_-	hypothetical protein	J9Q7R3	Salmonella_phage	1.8e-46	93.3
QAX23670.1\|91336_92083_-	hypothetical protein	J9Q7Y4	Salmonella_phage	3.7e-106	83.0
QAX23671.1\|92150_92543_-	hypothetical protein	J9Q6D8	Salmonella_phage	9.0e-48	68.3
QAX23672.1\|92544_93018_-	hypothetical protein	J9Q711	Salmonella_phage	1.9e-76	93.6
QAX23673.1\|93008_93353_-	hypothetical protein	J9Q7F6	Salmonella_phage	2.2e-53	92.1
QAX23674.1\|93450_94284_-	hypothetical protein	J9Q7R2	Salmonella_phage	4.8e-131	83.4
QAX23675.1\|94283_94718_-	hypothetical protein	J9Q7Y3	Salmonella_phage	2.9e-63	84.0
QAX23676.1\|94765_95194_-	hypothetical protein	J9Q6D6	Salmonella_phage	1.0e-28	71.6
QAX23677.1\|95272_96151_-\|capsid	phage major capsid protein	J9Q710	Salmonella_phage	4.7e-153	94.2
QAX23678.1\|96177_97077_-	hypothetical protein	J9Q7F4	Salmonella_phage	1.0e-123	82.6
QAX23679.1\|97099_98689_-	hypothetical protein	J9Q7R1	Salmonella_phage	5.1e-275	88.5
QAX23680.1\|98706_99963_-\|terminase	terminase	J9Q7Y2	Salmonella_phage	9.4e-248	97.4
QAX23681.1\|99965_100607_-	DNA-binding protein	J9Q6D4	Salmonella_phage	5.0e-96	88.2
QAX23682.1\|100782_101049_-	hypothetical protein	J9Q757	Salmonella_phage	1.3e-37	90.9
QAX23683.1\|101058_101949_-	hypothetical protein	J9Q7I6	Salmonella_phage	5.4e-165	97.0
QAX23684.1\|101945_102497_-	hypothetical protein	NA	NA	NA	NA
QAX23685.1\|102486_103128_-	adenylyl-sulfate kinase	J9Q807	Salmonella_phage	6.8e-109	96.7
QAX23686.1\|103124_103793_-	chromosome partitioning protein ParB	J9Q6L1	Salmonella_phage	6.6e-107	91.9
QAX23687.1\|103792_104473_-	chromosome partitioning protein ParB	J9Q756	Salmonella_phage	2.1e-108	89.3
QAX23688.1\|104556_106116_+	ATP-dependent helicase	J9Q7I4	Salmonella_phage	5.2e-280	92.9
QAX23689.1\|106118_106394_+	hypothetical protein	J9Q7T9	Salmonella_phage	3.1e-26	68.1
QAX23690.1\|106444_106882_-	hypothetical protein	A0A1V0E7W1	Vibrio_phage	9.5e-14	36.4
QAX23691.1\|107037_107568_+	transcriptional regulator	J9Q6L0	Salmonella_phage	3.5e-71	84.5
QAX23692.1\|107571_107880_+	hypothetical protein	NA	NA	NA	NA
QAX23693.1\|108200_108851_+	hypothetical protein	J9Q754	Salmonella_phage	1.9e-106	91.2
QAX23694.1\|108901_109105_+	hypothetical protein	J9Q7I3	Salmonella_phage	4.1e-28	95.5
QAX23695.1\|109697_110180_-	hypothetical protein	J9Q805	Salmonella_phage	1.0e-69	76.9
QAX23696.1\|110385_110667_-	ABC transporter	J9Q753	Salmonella_phage	2.4e-42	84.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP026164

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CRISPR-Cas detection and classification

Crispr_ID: CP026164_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026164_1

3419812-3419894

Orphan

Consensus_repeat	Method
GGCGGCTGACGCCTTGCCCGGCCTACGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026164_1

>merge|CP026164|1|3419812-3419894|CRISPRCasFinder
GGCGGCTGACGCCTTGCCCGGCCTACGGTGCTATTGCGCGATTATTTTGCCGGGTGGCGGCTGACGCCTTACCCGGCCTACGG

>CP026164|1|1|3419812-3419894|CRISPRCasFinder
GGCGGCTGACGCCTTGCCCGGCCTACGG	TGCTATTGCGCGATTATTTTGCCGGGT
GGCGGCTGACGCCTTACCCGGCCTACGG

Protein	Signature genes	Signature genes Name	Protein_function
CP026164.1\|QAX21827.1\|3427004_3428222_-\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
CP026164.1\|QAX21828.1\|3428478_3429762_+\|acyl-CoA-thioesterase	unknown	unknown	gnl\|CDD\|236709
CP026164.1\|QAX23495.1\|3417812_3419102_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
CP026164.1\|QAX21826.1\|3426051_3427008_-\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
CP026164.1\|QAX21815.1\|3413950_3414673_-\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
CP026164.1\|QAX21829.1\|3430034_3432722_-\|carbonate-dehydratase	unknown	unknown	gnl\|CDD\|319775
CP026164.1\|QAX21822.1\|3420429_3421812_-\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
CP026164.1\|QAX21820.1\|3419172_3419649_+\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
CP026164.1\|QAX21814.1\|3413286_3414009_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223487
CP026164.1\|QAX21819.1\|3417566_3417758_+\|hypothetical-protein	unknown	unknown	unknown
CP026164.1\|QAX21830.1\|3432773_3433205_-\|universal-stress-protein-UspG	unknown	unknown	gnl\|CDD\|185353
CP026164.1\|QAX21824.1\|3423433_3425122_-\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
CP026164.1\|QAX21813.1\|3412987_3413200_+\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	unknown
CP026164.1\|QAX21825.1\|3425264_3425990_-\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
CP026164.1\|QAX21812.1\|3412808_3412988_+\|hypothetical-protein	unknown	unknown	unknown
CP026164.1\|QAX21818.1\|3416558_3417599_-\|biotin-synthase	unknown	unknown	gnl\|CDD\|185063
CP026164.1\|QAX21821.1\|3419914_3420184_+\|hypothetical-protein	unknown	unknown	unknown
CP026164.1\|QAX21817.1\|3415404_3416562_-\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
CP026164.1\|QAX21823.1\|3421910_3423437_-\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
CP026164.1\|QAX21816.1\|3414665_3415421_-\|malonyl-[acyl-carrier-protein]-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340

Protein	Function_ID	Function_description	E-value
CP026164.1\|QAX21827.1\|3427004_3428222_-\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
CP026164.1\|QAX21814.1\|3413286_3414009_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
CP026164.1\|QAX23495.1\|3417812_3419102_+\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
CP026164.1\|QAX21829.1\|3430034_3432722_-\|carbonate-dehydratase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
CP026164.1\|QAX21825.1\|3425264_3425990_-\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172
CP026164.1\|QAX21822.1\|3420429_3421812_-\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
CP026164.1\|QAX21820.1\|3419172_3419649_+\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
CP026164.1\|QAX21815.1\|3413950_3414673_-\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.84112e-104
CP026164.1\|QAX21818.1\|3416558_3417599_-\|biotin-synthase	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
CP026164.1\|QAX21830.1\|3432773_3433205_-\|universal-stress-protein-UspG	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	1.69931e-44
CP026164.1\|QAX21824.1\|3423433_3425122_-\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
CP026164.1\|QAX21828.1\|3428478_3429762_+\|acyl-CoA-thioesterase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
CP026164.1\|QAX21823.1\|3421910_3423437_-\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
CP026164.1\|QAX21826.1\|3426051_3427008_-\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	5.51258e-178
CP026164.1\|QAX21817.1\|3415404_3416562_-\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
CP026164.1\|QAX21816.1\|3414665_3415421_-\|malonyl-[acyl-carrier-protein]-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.7976e-160

>CP026164.1|QAX21820.1|3419172_3419649_+|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>CP026164.1|QAX23495.1|3417812_3419102_+|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVAGESLRLLESGEWQPQVAAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMAALQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>CP026164.1|QAX21819.1|3417566_3417758_+|hypothetical-protein
MRHCPARLVSHFPLQKVVHFLFHTASLLAALAPPSYIVNYAPGDVLACRLDAARNILCTFHCK
>CP026164.1|QAX21818.1|3416558_3417599_-|biotin-synthase
MAHQPRWTMSQVTELFNKPLLDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>CP026164.1|QAX21817.1|3415404_3416562_-|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGQQRRDILAARIRQFREGMGEVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHAEDINRLLEVLHGHSE
>CP026164.1|QAX21816.1|3414665_3415421_-|malonyl-[acyl-carrier-protein]-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAIGELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>CP026164.1|QAX21815.1|3413950_3414673_-|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSLVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>CP026164.1|QAX21814.1|3413286_3414009_+|ABC-transporter-ATP-binding-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>CP026164.1|QAX21813.1|3412987_3413200_+|dTDP-4-dehydrorhamnose-reductase
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>CP026164.1|QAX21812.1|3412808_3412988_+|hypothetical-protein
MKLLWQQMTLFLHPLILSNKLIFKIFKEKTPFAPIQPQAAYALAYRRFSNSNTQGYPQE
>CP026164.1|QAX21821.1|3419914_3420184_+|hypothetical-protein
MAAKHGATETAGVGGLNIAETFPEGRGSPHGCGLRAVFCKDAASARPEACRDKSKAPRSGDVAGRSPGVQGAAATGRPLCAPCSMRNIT
>CP026164.1|QAX21822.1|3420429_3421812_-|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>CP026164.1|QAX21823.1|3421910_3423437_-|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLLGEGKARVRGGDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>CP026164.1|QAX21824.1|3423433_3425122_-|urocanate-hydratase
MSQSKYRQLDVRAPRGTTLTAKSWLTEAPLRMLMNNLDPDVAENPHELVVYGGIGRAARNWECYDAIVKALKNLESDETLLVQSGKPVGVFKTHENSPRVLIANSNLVPHWATWEHFNELDAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYQGSLKGRWVLTAGLGGMGGAQPLAATLAGACSLNIECQQSRIDFRLRTRYVDEQATSLDDALARIKKYTAEGQAISIALCGNAAEIVPELVKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>CP026164.1|QAX21825.1|3425264_3425990_-|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>CP026164.1|QAX21826.1|3426051_3427008_-|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIVRAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEAAHQALREAVADCQRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLATLLRIVEPLCRSGKLQAVDLVEFNPLFDIDGQGARTAARVAWQIAHWWR
>CP026164.1|QAX21827.1|3427004_3428222_-|imidazolonepropionase
MTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDANGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASLHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>CP026164.1|QAX21828.1|3428478_3429762_+|acyl-CoA-thioesterase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>CP026164.1|QAX21829.1|3430034_3432722_-|carbonate-dehydratase
MNTDKPGAPYYQRSVEETLASVQSSPEGISGTEAATRLQQYGENALPQKPGKPAWLRFIAHFNDVLIYVLLAAALLKAVMGHWIDMAVILAVAVVNALIGFIQESNAEKSLQSIRNMLSSEAVAIRQGNHETIPTTSLVPGDIVVIRAGDRIPADLRVIEAHNLRVEEAILTGESTVVEKTTEPLSGDLPLGDRSNLLFSGTTVSSGAGKGIVVATGGNTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFILILVMMAALFVFSLLFRDMPVSELMLSLISLAVASVPEGLPAIISIILSLGVQAMARQKAIIRKLPTVETLGAMTVICSDKTGTLTMNEMTVKAVITADSVYRVEGDSYEPVGKIHAIDDPTPVTIAPGSLFERYLRTIDLCNDSQLIKEESGLWKITGGPTEGALKVLAAKVTLPPLTSELRSKIPFDSQYKYMSTLYRLGEEEVVLVTGAPDVLFRLCQYQQSDSGLQPLDLPYWEGKIEEYAREGLRMVAAAWKPAAAGQTELTHQDLQQGVILLGVAGMMDPPRPEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGIGNAGNAITGRELEVMDDAQLSVAAQQFDIFARTSPEDKFRLVQALQSKKEIVGMTGDGVNDAPALKQADVGVAMGIKGTEVTKEAADMVLTDDNFATIASAVREGRRVYDNLKKTILFVMPTNLAQGLLIVIALLAGNVLPLTPVLILWMNMATSATLSFGLAFEAGEKNIMRRPPRDPKIHVMDGFAIWRVAFVGSMIAVSAFILEAWLQPRGYSPEFIRTVLLQTLVTAQWFYMLNCRVSDGFSLTKGLLANKGIWIVSGVLLLLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEKPLTRKWRSA
>CP026164.1|QAX21830.1|3432773_3433205_-|universal-stress-protein-UspG
MYKNIVVPVDVFDAGLADKALSHAKFLAQHSAGQIHLIHVIPAFSPVLTRGFISDARKMEDHLLNTAKEKLSELVKKNGLAEDASHLYVRSGNVRDQVIALADELKADVVIVGSRNPGIQTHLLGSEAANIVRYAHVPVFVVR

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Crispr_ID: CP026164_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026164_2

4094450-4094589

Orphan

Consensus_repeat	Method
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026164_2

>merge|CP026164|2|4094450-4094589|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAGCCCCAGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTATGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

>CP026164|2|2|4094450-4094589|CRISPRCasFinder
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACCGAAGCAGCAG	CCCCAGCAAGCGCAGCGCCGCCGGGCACGGAGCCGCTTTA
TGCCGGGTGGCGGCTGGCGCCTTACCCGGCCTACAAAACTGAAGCAGCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP026164.1\|QAX22420.1\|4092318_4093374_-\|DNA-polymerase-IV	unknown	unknown	gnl\|CDD\|235035
CP026164.1\|QAX22418.1\|4090363_4091821_+\|cytosol-nonspecific-dipeptidase	unknown	unknown	gnl\|CDD\|184986
CP026164.1\|QAX22413.1\|4085617_4087018_+\|GABA-permease	unknown	unknown	gnl\|CDD\|182297
CP026164.1\|QAX22414.1\|4087063_4087756_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|183181
CP026164.1\|QAX22425.1\|4096673_4097312_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	unknown	unknown	gnl\|CDD\|236457
CP026164.1\|QAX22412.1\|4084184_4085468_+\|4-aminobutyrate--2-oxoglutarate-transaminase	unknown	unknown	gnl\|CDD\|236149
CP026164.1\|QAX22423.1\|4094834_4096058_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	unknown	unknown	gnl\|CDD\|235481
CP026164.1\|QAX22428.1\|4099333_4100677_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	unknown	unknown	gnl\|CDD\|235426
CP026164.1\|QAX22426.1\|4097304_4098099_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	unknown	unknown	gnl\|CDD\|235423
CP026164.1\|QAX22416.1\|4088297_4089542_-\|esterase-FrsA	unknown	unknown	gnl\|CDD\|235337
CP026164.1\|QAX22419.1\|4091863_4092316_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|182099
CP026164.1\|QAX22417.1\|4089647_4090106_-\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|236395
CP026164.1\|QAX22422.1\|4094616_4094832_-\|(Na+)-NQR-maturation-NqrM	unknown	unknown	gnl\|CDD\|225538
CP026164.1\|QAX22415.1\|4087841_4088240_-\|Crl-family-RNA-polymerase-assembly-factor	unknown	unknown	gnl\|CDD\|182882
CP026164.1\|QAX22427.1\|4098091_4099330_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	unknown	unknown	gnl\|CDD\|235425
CP026164.1\|QAX22431.1\|4101799_4102567_-\|class-II-glutamine-amidotransferase	unknown	unknown	gnl\|CDD\|372525
CP026164.1\|QAX22429.1\|4100633_4100843_+\|hypothetical-protein	unknown	unknown	unknown
CP026164.1\|QAX22421.1\|4093533_4094394_+\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176522
CP026164.1\|QAX22424.1\|4096070_4096667_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	unknown	unknown	gnl\|CDD\|235074
CP026164.1\|QAX22430.1\|4101088_4101829_+\|transpeptidase	unknown	unknown	gnl\|CDD\|225577

Protein	Function_ID	Function_description	E-value
CP026164.1\|QAX22420.1\|4092318_4093374_-\|DNA-polymerase-IV	gnl\|CDD\|235035	PRK02406, PRK02406, DNA polymerase IV; Validated.	0
CP026164.1\|QAX22418.1\|4090363_4091821_+\|cytosol-nonspecific-dipeptidase	gnl\|CDD\|184986	PRK15026, PRK15026, aminoacyl-histidine dipeptidase; Provisional.	0
CP026164.1\|QAX22413.1\|4085617_4087018_+\|GABA-permease	gnl\|CDD\|182297	PRK10197, PRK10197, GABA permease.	0
CP026164.1\|QAX22414.1\|4087063_4087756_+\|transcriptional-regulator	gnl\|CDD\|183181	PRK11534, PRK11534, DNA-binding transcriptional regulator CsiR; Provisional.	7.30626e-151
CP026164.1\|QAX22425.1\|4096673_4097312_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D	gnl\|CDD\|236457	PRK09292, PRK09292, Na(+)-translocating NADH-quinone reductase subunit D; Validated.	1.0782e-142
CP026164.1\|QAX22412.1\|4084184_4085468_+\|4-aminobutyrate--2-oxoglutarate-transaminase	gnl\|CDD\|236149	PRK08088, PRK08088, 4-aminobutyrate--2-oxoglutarate transaminase.	0
CP026164.1\|QAX22423.1\|4094834_4096058_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F	gnl\|CDD\|235481	PRK05464, PRK05464, Na(+)-translocating NADH-quinone reductase subunit F; Provisional.	0
CP026164.1\|QAX22428.1\|4099333_4100677_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A	gnl\|CDD\|235426	PRK05352, PRK05352, Na(+)-translocating NADH-quinone reductase subunit A; Provisional.	0
CP026164.1\|QAX22426.1\|4097304_4098099_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C	gnl\|CDD\|235423	PRK05346, PRK05346, Na(+)-translocating NADH-quinone reductase subunit C; Provisional.	1.37213e-153
CP026164.1\|QAX22416.1\|4088297_4089542_-\|esterase-FrsA	gnl\|CDD\|235337	PRK05077, frsA, esterase FrsA.	0
CP026164.1\|QAX22419.1\|4091863_4092316_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|182099	PRK09831, PRK09831, GNAT family N-acetyltransferase.	2.0776e-84
CP026164.1\|QAX22417.1\|4089647_4090106_-\|xanthine-phosphoribosyltransferase	gnl\|CDD\|236395	PRK09177, PRK09177, xanthine-guanine phosphoribosyltransferase; Validated.	2.19173e-113
CP026164.1\|QAX22422.1\|4094616_4094832_-\|(Na+)-NQR-maturation-NqrM	gnl\|CDD\|225538	COG2991, COG2991, Uncharacterized protein conserved in bacteria [Function unknown].	4.00668e-29
CP026164.1\|QAX22415.1\|4087841_4088240_-\|Crl-family-RNA-polymerase-assembly-factor	gnl\|CDD\|182882	PRK10984, PRK10984, sigma factor-binding protein Crl.	1.06899e-83
CP026164.1\|QAX22427.1\|4098091_4099330_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B	gnl\|CDD\|235425	PRK05349, PRK05349, Na(+)-translocating NADH-quinone reductase subunit B; Provisional.	0
CP026164.1\|QAX22431.1\|4101799_4102567_-\|class-II-glutamine-amidotransferase	gnl\|CDD\|372525	pfam13230, GATase_4, Glutamine amidotransferases class-II. This family captures members that are not found in pfam00310.	1.08772e-144
CP026164.1\|QAX22421.1\|4093533_4094394_+\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176522	cd08580, GDPD_Rv2277c_like, Glycerophosphodiester phosphodiesterase domain of uncharacterized bacterial protein Rv2277c and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized bacterial protein Rv2277c and similar proteins. Members in this subfamily are bacterial homologous of mammalian GDE4, a transmembrane protein whose cellular function has not yet been elucidated.	7.57019e-129
CP026164.1\|QAX22424.1\|4096070_4096667_-\|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E	gnl\|CDD\|235074	PRK02830, PRK02830, Na(+)-translocating NADH-quinone reductase subunit E; Provisional.	4.25239e-127
CP026164.1\|QAX22430.1\|4101088_4101829_+\|transpeptidase	gnl\|CDD\|225577	COG3034, COG3034, Uncharacterized protein conserved in bacteria [Function unknown].	1.01465e-109

>CP026164.1|QAX22421.1|4093533_4094394_+|glycerophosphodiester-phosphodiesterase
MKKILTALCLLATAGAWAAPQLIAHRGGTGDAPENTLPAIKLALENNAEAIWVTVQLSRDGVPVLYRSSDLSALTNSEGKVSSLTAAELAKVDAGWKWGDDSHPWRGKQATIPTLQSVLQQWPHTFFYIDIKSPDADPTVMGQRLLEVLKTTDSLDRVRVYSTEDRYIAALPPAIPRFATRSETRTRLANISLSHQCQPASQRDGEQWYGLELKRKVEVVEKFTLGEGISPATLTWDKEAMDCFRSQDKAHIIFFGINSAEDYRTAIELGADGVMVDSPAQAKSWQ
>CP026164.1|QAX22420.1|4092318_4093374_-|DNA-polymerase-IV
MRKIIHVDMDCFFAAVEMRDNPALRDIPLAIGGSRVQRGVISTANYPARKFGVRSAMPTATALKLCPHLTLLPGRFDAYKEASNHIREIFSRYTSRIEPLSLDEAYLDVSDSEHCHGSATLIAQEIRQTIERELRLTASAGVAPVKFLAKIASDMNKPNGQFVIAPHQVAEFVRALPLAKIPGVGKVSAAKLENMGLRTCGDVQNSDLAMLLKRFGKFGRILWERSHGIDEREIHNDRQRKSVGVERTLAEDIHEWPECEAIIENLYPELERRLTKVKPDLLIARQGIKLKFNDFQLTTQEHVWPRLNKEDLIATAHKAWDERRGGRGVRLVGLHVTLLDPQLERQLLLGI
>CP026164.1|QAX22419.1|4091863_4092316_-|GNAT-family-N-acetyltransferase
MHIRAYRDSDLPLLCQIFLRAVRETASRDYTPGQIAAWAQVDETRWRQKLADSIGLVAVVNSQPVGFITAIGTHIDLLFVSPDRARQGIGGALIEALCVQYPAQILTVDASITAKPCFTAHGFKVVAEQRVAAHGEWFINYRMEKRVALR
>CP026164.1|QAX22418.1|4090363_4091821_+|cytosol-nonspecific-dipeptidase
MSELSQLSPQPLWDIFAKICSIPHPSYHEEQLAEHIMGWAKEKGLHAERDQVGNILIRKGATAGMENRKPVALQAHLDMVPQKNNDTVHDFVKDPIQPYIDGEWVKARGTTLGADNGIGMASALAVLADDSVAHGPLEVLLTMTEEAGMDGAFGLQANWLQADILINTDSEEEGEIYMGCAGGIDFTSNLALTREAIPAGFQSFKVTLKGLKGGHSGGDIHLGLGNANKLLSRFLAGHADELDLRLVDFNGGTLRNAIPREAYATVAVAADKADALKALVNTYQALLKNELEAKEKNLVVLLEAVDNDKAALTQASRDTFIRLLNATPNGVIRNSDVAKGVVETSLNVGVVTMTDDNVQIHCLIRSLIDSGKDYVVSMLDSLGKLAGAKTEAKGAYPGWQPDANSPVMHLVRETYQRLFNKTPNIQIIHAGLECGLFKKPYPEMDMVSIGPTITGPHSPDEQVHIESVGQYWTLLTELLKAIPAK
>CP026164.1|QAX22417.1|4089647_4090106_-|xanthine-phosphoribosyltransferase
MSEKYVVTWDMLQIHARKLASRLLPVEQWKGIIAVSRGGLVPGALLARELGIRHVDTVCISSYDHDNQRELKVLKRAEGDGEGFIVIDDLVDTGGTAVAIREMYPKAHFVTIFAKPAGRPLVDDYVVDIPQDTWIEQPWDMGVVFVPPIAGR
>CP026164.1|QAX22416.1|4088297_4089542_-|esterase-FrsA
MSQANLSETLFKPRFKHPETSTLVRRFSAGKPQAMQSALSGNHVDHWYRLINRLMWIWRGVTPQEILDVQARIVMSEAERTDPELFDTVIGYRGGNWIFEWAKEAMQWQQKAGQEADPLLSGRHWLHASNLYSIAAYPHIKGDELAEQAQALANRAYEEAAQRLPGSLRELEFTIPGGSPITGFLHMPKGEGPFPTVLMCGGLDSLQTDYYNLYENYFSPLGIAMLTIDMPSIGFSSKWTLNQDTSLLHQHALRHLENVPWIDHTRVAAFGFRFGANIAVRLGYLEPQRLKAVACLGPVVHGLLVDPLHQGRVPEMYLDVLASRLGMHDASDEALRVELNRYSLKTQGLLGRRCPTPMLSGFWKDDPFSPEEESRLITSSSADGKLLEIPFNPVYRNFDHALRQIARWINHRFG
>CP026164.1|QAX22415.1|4087841_4088240_-|Crl-family-RNA-polymerase-assembly-factor
MTLPSGHLKSKLIKKFTALGPYIREEQCHDNRFFFDCLAVCVNVKPAPEKREFWGWWMEMEAQESRFTYSYQFGLFNKEGSWQAVDIDDPEVSERLEKTLREFHERAAALLTTFNLKLEPADDFSEPVRLRA
>CP026164.1|QAX22414.1|4087063_4087756_+|transcriptional-regulator
MTAIPQATAIDGYRWLKNDIIRGVYQPDEKLRMSLLTSRYGLGVGPLREALSQLVAERLVTVVNQKGYRVAPMSEQELLDIFDARANMEAMLVRLAIERGGDEWEAELLARAHLLNKLESCEASERLLDEWDQRHQAFHTAIVAGCGSQYLLQMRERLFDLAARYRFIWLRTTVLSVEMLEDKHVQHQTLVDAILARDAEQASALMREHLLTPIPIIQQAMAGKLSPQAG
>CP026164.1|QAX22413.1|4085617_4087018_+|GABA-permease
MGQLSQSQDLGAGLKSRHVTMLSIAGVIGASLFVGSSVAIAEAGPAVLLAYLFAGLLVVMIMRMLAEMAVATPDTGSFSTYADKAIGRWAGYTIGWLYWWFWVLVIPLEANIAAIILHSWVPGVPVWLFSLVITLALTGSNLLSVKNYGEFEFWLALCKVIAILAFIVLGAVAITGFYPYAEVSGISRLWDHGGFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPDKHIVRATNSVIWRISIFYLCSIFIVVALIPWNMPGLKSIGSYRSVLELLHIPYAKLIMDGVILLSVTSCLNSALYTASRMLYSLSRRGDAPAIMGRTNRSKTPYVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAIALLVYLVIAVSQLRMRKILQAQGGEIRLRMWLYPYLTWLVIAFITFVLVVMLFRPAQQLEVISTGLLALGIICTVPIMSRWKKLVLWQKLPLQNTR
>CP026164.1|QAX22412.1|4084184_4085468_+|4-aminobutyrate--2-oxoglutarate-transaminase
MNSNKAMMARRSDAVPRGVGQIHPIFAERAENCRVWDVEGREYLDFAGGIAVLNTGHLHPQIVAAVEDQLKKLSHTCFQVLAYEPYLALCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATGRSGAIAFTGAYHGRTHYTLSLTGKVNPYSAGMGLMPGHVYRALYPCALHGVSDDEAIASIHRIFKNDAAPEDIAAIIIEPVQGEGGFYAASPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAADITTFAKSIAGGFPLAGVTGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLQIFEQENLLEKANQLGDTLRQGLLAIAEDHPEIGDVRGLGAMIAIELFEEGDRSRPNARLTADIVARARDKGLILLSCGPYYNVLRILVPLTIEEAQIEQGLNIIADCFSEAKQA
>CP026164.1|QAX22422.1|4094616_4094832_-|(Na+)-NQR-maturation-NqrM
MLTVFIATFVIFALVIFGMSLGYLVKRKSIQGSCGGISALGLEKVCDCPEPCDARKKRLAREAQRQQRRIL
>CP026164.1|QAX22423.1|4094834_4096058_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-F
MEIILGVVMFTLIVLVLSGLILGARSKLVNAGDVVIEINNEADKQIRTPAGDKLLNTLSSNGIFVSSACGGGGSCGQCRVTVKEGGGDILPTELSHITKRDAKAGCRLACQVAVKQNMKIELPEEIFGVKKWECEVISNDNKATFIKELKLRIPEGEVVPFRAGGYIQIECPPHKVAYADFDVPDEYRSDWDKFNLFRYVSEVKEPTLRAYSMANYPEEKGIIMLNVRIATPPPKVPDAPPGIMSSYIWSLKPGDKVTISGPFGEFFAKETDAEMVFIGGGAGMAPMRSHIFDQLKRLHSTRKISFWYGARSLREMFYDEEFEQLARDNPNFTFHVALSDPLPEDNWTGHTGFIHNVLYENYLRDHPAPEDCEFYMCGPPVMNAAVIKMLKDLGVEDENILLDDFGG
>CP026164.1|QAX22424.1|4096070_4096667_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-E
MAHYISLFVRAVFVENMALAFFLGMCTFLAVSKKVSTAFGLGVAVTVVLGLAVPINNLVYNLVLRDGALVEGVDLSFLNFITFIGVIAALVQILEMILDKYFPALYNALGIFLPLIAVNCAIFGGVSFMVQRDYNFPESIVYGFGSGIGWMLAIVAMAGIREKMKYANVPAGLRGLGITFITTGLMALGFMSFSGVQL
>CP026164.1|QAX22425.1|4096673_4097312_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-D
MAEQSDMKEVKRVLVGPLIANNPIALQVLGVCSALAVTTKLETAFVMTIAVTLVTAFSSMFISMIRHHIPNSVRIIVQMAIIASLVIVVDQLLRAFAYETSKQLSVFVGLIITNCIVMGRAEAYAMKSPPLASFMDGIGNGLGYGAILIIVGFLRELIGSGKLFGITVLETVQNGGWYQPNGLFLLAPSAFFIIGLLIWALRSWKPEQQEKE
>CP026164.1|QAX22426.1|4097304_4098099_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-C
MAEKKSNDSIGKTLLVVLVLCLVCSIVVAGSAVGLKSRQQAQRALDKQRNILAVSGLMHPGMDADAVADTFAARITPRLVNLATGELLEKDPGKFNQAQALKDPQQSMALDASQDPAGIKRRSNLAEIYLVRDAQQKIEQVVLPIYGNGLWSMMYAFVALDVDGRTVKGITYYDQGETPGLGGEVENPNWRQQFVGKQVLDDNGMPALKVVKGGARAGDLHAVDGLSGATLTSNGVQHSFDFWMGELGFGPFLKKVREGELNNG
>CP026164.1|QAX22427.1|4098091_4099330_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-B
MGLKHLIEKLEPHFTHGGKLEKYYPLYEAAATIFYTPGQVTRGAAHVRDAIDLKRMMILVWFAVFPAMFWGMYNVGLQTIPALHKLYGAEQLQQAIANNWHYSVAQWLGVSFSADAGWLSMMTLGAVFFLPIYITVFIVGGFWEVLFAIVRKHEINEGFFVTSILFALIVPPTLPLWQAALGISFGVVIAKEIFGGTGRNFLNPALAGRAFLFFAYPAQISGDLVWTAADGFSGATPLSQWASGGGEALVNVATGVPVSWMDAFLGNIPGSIGEVSTLMIFIGGAIILFGRVASWRIVAGVMIGMIATATLFNVIGSDTNPMFAMPWYWHLVLGGFAFGMMFMATDPVSASFTDKGKWSYGVLIGVMCVLIRVVNPAYPEGMMLAILFANLFAPLFDYLVVQANIKRRKSRG
>CP026164.1|QAX22428.1|4099333_4100677_-|NADH:ubiquinone-reductase-(Na(+)-transporting)-subunit-A
MIKITKGLDLPIAGMPLQQISPAPAVKRVALLGEEYVGMRPAMAVKEGDRVKKGQILFEDKKIPGVCFTAPASGIVSAIHRGERRVLQSVVIDIEGNDAVAFTRYAADALAELPRDTVQQQLLASGQWTALRTRPFSKTPLPGSTPAAIFVNAMDTNPLAAEPQPIILAERAAFDAGLTVLTRLTDGKVHVCQPSGGKLGGHPLGQVCFNQFSGPHPAGLPGTHIHFLEPVSLNKQVWHLNYQDAIAIGKLFLDGELYCERIIALGGPQVTSPRLVKTTLGASLEDLLAGELQEGENRVISGSVLSGARAHGPHAFLGRFHLQVSVVKEGREKELFGWVMPGKEKFSITRTTLGHFFKRKRFHFSTDTNGGERAMVPIGNYERVMPLDILPTILLRDLLAGDTDSAQALGCLELDEEDLALCTYVCPGKYEYGPALRSVLTRIEQEG
>CP026164.1|QAX22429.1|4100633_4100843_+|hypothetical-protein
MPAMGKSSPFVILIISLAGIRNLNPDAGQGQLIDRMAEKKGRNGASSAQDGREASFLTLMMNRRKCNIS
>CP026164.1|QAX22430.1|4101088_4101829_+|transpeptidase
MRKIALFIAMLLLPCVSFAGLLSSNSPTTPVSKEYKQQLMGSPVYIEIFKEERMLDLYVKMGETYQLLDSYRICNYSGGLGPKQRQGDFKSPEGFYNVTRSQLKPDSRFYKAINIGFPNAYDRAHGYEGKYLMIHGDCVSVGCYAMTDSGIDEIFQFVTGALVFGQPSVQVSIYPFRMTNANMERHKYSYYADFWKQLKPGYDYFQQTHKPPVVSVTDGRYVVSKPLSHEVVQPQLASNYTLPETK
>CP026164.1|QAX22431.1|4101799_4102567_-|class-II-glutamine-amidotransferase
MCELLGMSANVPTDICFSFTGLVQRGGGTGPHKDGWGITFYEGKGCRTFKDPQPSFQSPIAKLVQDYPIKSCSVVAHIRQANRGRVALENTHPFTRELWGRNWTYAHNGQLKGYKSLKTGNFHPVGETDSEKAFCWLLHRLTERYPRTPGNMLGVFKYIATLAGELREKGVFNMLLSDGRYVMAFCSTNLHWITRRAPFGVAKLLDQDVEIDFQRETTPNDVVTVIATQPLTANETWHKIMPGEWALFCLGERVV

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Crispr_ID: CP026164_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP026164_3

4311452-4311546

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP026164_3

>merge|CP026164|3|4311452-4311546|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP026164|3|3|4311452-4311546|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP026164.1\|QAX22596.1\|4297667_4298513_-\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP026164.1\|QAX22614.1\|4322093_4322573_-\|type-3-dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
CP026164.1\|QAX22603.1\|4309279_4309819_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
CP026164.1\|QAX22609.1\|4317508_4318795_+\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
CP026164.1\|QAX22601.1\|4305626_4308533_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP026164.1\|QAX22600.1\|4303081_4305439_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP026164.1\|QAX22610.1\|4318800_4319790_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP026164.1\|QAX22605.1\|4311687_4313304_+\|histidine-kinase	unknown	unknown	gnl\|CDD\|225827
CP026164.1\|QAX22611.1\|4319786_4320608_+\|ribosomal-RNA-small-subunit-methyltransferase-A	unknown	unknown	gnl\|CDD\|234708
CP026164.1\|QAX22608.1\|4315105_4317454_+\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP026164.1\|QAX22607.1\|4314034_4314862_-\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP026164.1\|QAX22602.1\|4308545_4309205_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP026164.1\|QAX22598.1\|4300570_4302073_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP026164.1\|QAX22606.1\|4313303_4314002_+\|response-regulator	unknown	unknown	gnl\|CDD\|226931
CP026164.1\|QAX22599.1\|4302210_4302906_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP026164.1\|QAX23542.1\|4309781_4309970_+\|hypothetical-protein	unknown	unknown	unknown
CP026164.1\|QAX22604.1\|4309998_4311363_-\|malate-permease	unknown	unknown	gnl\|CDD\|377030
CP026164.1\|QAX22613.1\|4320992_4321841_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP026164.1\|QAX22597.1\|4298850_4300560_+\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP026164.1\|QAX22612.1\|4320610_4320988_+\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098

Protein	Function_ID	Function_description	E-value
CP026164.1\|QAX22596.1\|4297667_4298513_-\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP026164.1\|QAX22614.1\|4322093_4322573_-\|type-3-dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
CP026164.1\|QAX22603.1\|4309279_4309819_-\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
CP026164.1\|QAX22609.1\|4317508_4318795_+\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP026164.1\|QAX22601.1\|4305626_4308533_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP026164.1\|QAX22600.1\|4303081_4305439_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP026164.1\|QAX22610.1\|4318800_4319790_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP026164.1\|QAX22605.1\|4311687_4313304_+\|histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	8.20013e-173
CP026164.1\|QAX22611.1\|4319786_4320608_+\|ribosomal-RNA-small-subunit-methyltransferase-A	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
CP026164.1\|QAX22608.1\|4315105_4317454_+\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP026164.1\|QAX22607.1\|4314034_4314862_-\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
CP026164.1\|QAX22602.1\|4308545_4309205_+\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
CP026164.1\|QAX22598.1\|4300570_4302073_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP026164.1\|QAX22599.1\|4302210_4302906_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP026164.1\|QAX22606.1\|4313303_4314002_+\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
CP026164.1\|QAX22604.1\|4309998_4311363_-\|malate-permease	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP026164.1\|QAX22613.1\|4320992_4321841_+\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP026164.1\|QAX22597.1\|4298850_4300560_+\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP026164.1\|QAX22612.1\|4320610_4320988_+\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74

>CP026164.1|QAX22604.1|4309998_4311363_-|malate-permease
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP026164.1|QAX23542.1|4309781_4309970_+|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFCSGK
>CP026164.1|QAX22603.1|4309279_4309819_-|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP026164.1|QAX22602.1|4308545_4309205_+|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP026164.1|QAX22601.1|4305626_4308533_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQETNVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP026164.1|QAX22600.1|4303081_4305439_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP026164.1|QAX22599.1|4302210_4302906_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP026164.1|QAX22598.1|4300570_4302073_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP026164.1|QAX22597.1|4298850_4300560_+|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>CP026164.1|QAX22596.1|4297667_4298513_-|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP026164.1|QAX22605.1|4311687_4313304_+|histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAH
>CP026164.1|QAX22606.1|4313303_4314002_+|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP026164.1|QAX22607.1|4314034_4314862_-|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP026164.1|QAX22608.1|4315105_4317454_+|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP026164.1|QAX22609.1|4317508_4318795_+|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP026164.1|QAX22610.1|4318800_4319790_+|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP026164.1|QAX22611.1|4319786_4320608_+|ribosomal-RNA-small-subunit-methyltransferase-A
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP026164.1|QAX22612.1|4320610_4320988_+|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP026164.1|QAX22613.1|4320992_4321841_+|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP026164.1|QAX22614.1|4322093_4322573_-|type-3-dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP026164_1	1.1\|3419840\|27\|CP026164\|CRISPRCasFinder	3419840-3419866	27	NZ_CP015439	Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence	57276-57302	5	0.815

1. spacer 1.1|3419840|27|CP026164|CRISPRCasFinder matches to NZ_CP015439 (Anoxybacillus amylolyticus strain DSM 15939 plasmid pDSM15939_1, complete sequence) position: , mismatch: 5, identity: 0.815

tgctattgcgcgattattttgccgggt	CRISPR spacer
agctattgcgcgactatgttgccgtgc	Protospacer
 ************.*** ****** *.

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1620947 : 1627852

Planktothrix_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX23410.1\|1620947_1621811_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	7.4e-10	27.5
QAX20179.1\|1621821_1622595_+	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
QAX23411.1\|1622835_1623729_-	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
QAX20180.1\|1623974_1625336_-	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
QAX20181.1\|1625654_1626377_-	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
QAX20182.1\|1626373_1627852_-	two-component system sensor histidine kinase BaeA	W8CYF6	Bacillus_phage	8.5e-30	28.3

DBSCAN-SWA_2

1671197 : 1684515

Enterobacteria_phage(22.22%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX20211.1\|1671197_1672604_+	phosphogluconate dehydrogenase (NADP(+)-dependent, decarboxylating)	M4QQM4	Ostreococcus_lucimarinus_virus	4.7e-38	28.7
QAX20212.1\|1672830_1674246_+	mannose-1-phosphate guanylyltransferase	A0A1V0SH58	Hokovirus	1.4e-53	31.0
QAX20213.1\|1674267_1675638_+	phosphomannomutase	A0A127AWJ1	Bacillus_phage	6.4e-32	25.9
QAX23414.1\|1675792_1676857_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	9.8e-105	54.7
QAX20214.1\|1676870_1677740_+	glucose-1-phosphate thymidylyltransferase	I7I009	Enterobacteria_phage	1.7e-110	66.7
QAX20215.1\|1677771_1678662_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.8e-28	34.2
QAX20216.1\|1678676_1679231_+	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	2.9e-52	58.2
QAX20217.1\|1679410_1680577_+	UDP-glucose 6-dehydrogenase	M1I798	Paramecium_bursaria_Chlorella_virus	9.1e-112	54.7
QAX20218.1\|1680969_1681977_+	acyltransferase	NA	NA	NA	NA
QAX23415.1\|1682191_1682296_-	hypothetical protein	NA	NA	NA	NA
QAX20219.1\|1683246_1683441_-	hypothetical protein	NA	NA	NA	NA
QAX20220.1\|1683510_1684515_-	NAD-dependent epimerase	E3T4Y8	Cafeteria_roenbergensis_virus	1.0e-31	29.5

DBSCAN-SWA_3

2607028 : 2617915

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX21079.1\|2607028_2610136_+	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
QAX21080.1\|2610190_2611456_+	MFS transporter	NA	NA	NA	NA
QAX21081.1\|2611486_2612575_-	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
QAX21082.1\|2612661_2612922_-	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
QAX21083.1\|2613219_2614080_+	class A broad-spectrum beta-lactamase SHV-71	A0A077SL40	Escherichia_phage	4.9e-155	99.0
QAX21084.1\|2614100_2614862_-	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
QAX21085.1\|2615122_2616025_+	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
QAX21086.1\|2616036_2617302_+	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.7e-233	99.5
QAX21087.1\|2617294_2617915_+	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_4

3281144 : 3290608

Brazilian_cedratvirus(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX21695.1\|3281144_3282866_+	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
QAX23488.1\|3282910_3283612_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
QAX21696.1\|3283965_3284184_+	translation initiation factor IF-1	NA	NA	NA	NA
QAX21697.1\|3284304_3286584_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
QAX21698.1\|3286614_3286932_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
QAX21699.1\|3287257_3287479_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
QAX21700.1\|3287433_3287616_-	hypothetical protein	NA	NA	NA	NA
QAX21701.1\|3287555_3289496_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
QAX21702.1\|3289492_3290608_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	9.9e-07	52.7

DBSCAN-SWA_5

3771706 : 3817198

Klebsiella_phage(22.22%)

terminase,tail,integrase,holin,tRNA

attL 3762773:3762818|attR 3814271:3814316

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3762773:3762818	attL	NA	NA	NA	NA
QAX22109.1\|3771706_3774775_-	kinase	A0A286S259	Klebsiella_phage	0.0e+00	97.8
QAX22110.1\|3774771_3775152_-	nitrite transporter	A0A286S2A6	Klebsiella_phage	1.8e-72	99.2
QAX22111.1\|3775161_3775644_-	DUF1833 domain-containing protein	A0A286S2B1	Klebsiella_phage	3.8e-80	93.8
QAX22112.1\|3775824_3776289_-	hypothetical protein	A0A286S298	Klebsiella_phage	6.7e-58	67.8
QAX22113.1\|3776603_3776939_-	hypothetical protein	NA	NA	NA	NA
QAX22114.1\|3777022_3779677_-\|tail	phage tail protein	A0A2D1GPC9	Escherichia_phage	3.0e-86	34.5
QAX23515.1\|3779750_3780119_-	zinc ribbon domain-containing protein	I6PDJ9	Cronobacter_phage	3.3e-15	42.9
QAX22115.1\|3780229_3780586_-	hypothetical protein	A0A1V0E5P9	Salmonella_phage	1.1e-44	75.0
QAX22116.1\|3780662_3780839_-	hypothetical protein	NA	NA	NA	NA
QAX22117.1\|3781006_3781489_-	hypothetical protein	NA	NA	NA	NA
QAX22118.1\|3781542_3782715_-	Ig domain-containing protein	A0A0D4DBN5	Acinetobacter_phage	7.2e-24	27.0
QAX22119.1\|3782738_3783131_-	electron transfer flavoprotein subunit beta	NA	NA	NA	NA
QAX22120.1\|3783127_3783679_-	hypothetical protein	G8C7Q1	Escherichia_phage	7.8e-29	39.9
QAX22121.1\|3783680_3784064_-	glutamate 5-kinase	A0A0S2SYG4	Pseudomonas_phage	7.1e-21	45.2
QAX22122.1\|3784050_3784284_-	hypothetical protein	A0A1V0E8A3	Vibrio_phage	1.3e-09	49.2
QAX22123.1\|3784293_3784548_-	hypothetical protein	J9Q7U0	Salmonella_phage	8.0e-21	52.4
QAX22124.1\|3784549_3784945_-	protein singed	A0A0S2SYB7	Pseudomonas_phage	3.3e-13	43.3
QAX22125.1\|3785266_3786220_-	hypothetical protein	A0A1B0VMF8	Pseudomonas_phage	5.0e-132	74.4
QAX22126.1\|3786230_3787016_-	hypothetical protein	A0A1B0VMG1	Pseudomonas_phage	1.7e-66	63.9
QAX22127.1\|3787546_3788659_-	hypothetical protein	I6PD76	Cronobacter_phage	3.3e-111	55.3
QAX22128.1\|3788642_3790043_-	DUF4055 domain-containing protein	A0A1B0VMH0	Pseudomonas_phage	9.2e-127	53.5
QAX22129.1\|3790044_3791358_-\|terminase	terminase	A0A0S2SYF1	Pseudomonas_phage	2.2e-183	73.6
QAX22130.1\|3791341_3792337_-\|terminase	terminase small subunit	Q5QF76	Pseudomonas_virus	1.1e-38	45.5
QAX22131.1\|3792884_3793070_-	hypothetical protein	NA	NA	NA	NA
QAX22132.1\|3793198_3793444_-	DUF2560 domain-containing protein	A0A286N2R1	Klebsiella_phage	4.6e-34	96.3
QAX22133.1\|3794257_3794452_-	hypothetical protein	A0A286SGR9	Klebsiella_phage	3.1e-25	87.5
QAX22134.1\|3794402_3794678_-	hypothetical protein	A0A286N2Q8	Klebsiella_phage	4.9e-08	71.4
QAX22135.1\|3794674_3795019_-	hypothetical protein	A0A286N2Q7	Klebsiella_phage	2.0e-38	80.7
QAX22136.1\|3795015_3795555_-	hypothetical protein	A0A286N2Q6	Klebsiella_phage	3.3e-101	98.9
QAX22137.1\|3795551_3795863_-\|holin	holin	A0A286N2Q5	Klebsiella_phage	3.8e-49	100.0
QAX22138.1\|3796503_3796980_-	endonuclease	A0A1I9SEX5	Klebsiella_phage	5.1e-37	51.9
QAX22139.1\|3796979_3797663_-	antiterminator	I6PDF8	Cronobacter_phage	2.6e-58	55.8
QAX22140.1\|3797796_3798432_-	NinG family protein	M9NYX8	Enterobacteria_phage	3.1e-82	78.4
QAX23516.1\|3798424_3798595_-	hypothetical protein	G8C7V4	Escherichia_phage	2.8e-14	71.4
QAX22141.1\|3798600_3799197_-	DUF1367 domain-containing protein	A0A0U2RT94	Escherichia_phage	2.1e-56	54.3
QAX22142.1\|3799303_3799561_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	4.9e-26	71.2
QAX23517.1\|3800343_3800814_-	DUF550 domain-containing protein	S4TSR6	Salmonella_phage	5.0e-45	59.2
QAX22143.1\|3800900_3801194_-	hypothetical protein	Q6UAT9	Klebsiella_phage	1.2e-41	82.5
QAX22144.1\|3801193_3801727_-	hypothetical protein	NA	NA	NA	NA
QAX22145.1\|3801719_3801983_-	DUF4752 domain-containing protein	T1S9K2	Salmonella_phage	2.2e-29	75.6
QAX23518.1\|3801979_3802465_-	hypothetical protein	R9TME7	Aeromonas_phage	3.3e-07	33.3
QAX22146.1\|3802467_3802692_-	hypothetical protein	H9C169	Pectobacterium_phage	2.0e-12	48.5
QAX22147.1\|3802688_3802991_-	MarR family transcriptional regulator	NA	NA	NA	NA
QAX22148.1\|3802990_3803767_-	replication protein	A0A193GYX1	Enterobacter_phage	8.8e-95	65.0
QAX23519.1\|3803763_3804492_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	7.8e-37	73.0
QAX22149.1\|3804625_3804847_-	transcriptional regulator	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
QAX22150.1\|3804886_3805120_-	transcriptional regulator	A0A2H4FNF3	Salmonella_phage	3.0e-22	70.4
QAX22151.1\|3805224_3805914_+	helix-turn-helix transcriptional regulator	Q76H56	Enterobacteria_phage	1.3e-86	70.6
QAX23520.1\|3805936_3806056_+	hypothetical protein	NA	NA	NA	NA
QAX22152.1\|3806254_3806971_+	hypothetical protein	NA	NA	NA	NA
QAX22153.1\|3806961_3807507_+	PIN domain-containing protein	NA	NA	NA	NA
QAX22154.1\|3807555_3807759_-	hypothetical protein	A0A192Y6Q5	Salmonella_phage	1.0e-18	71.6
QAX22155.1\|3808005_3808194_+	hypothetical protein	NA	NA	NA	NA
QAX22156.1\|3808186_3808393_+	cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	1.4e-31	94.1
QAX22157.1\|3808473_3808758_+	hypothetical protein	G8C7T1	Escherichia_phage	8.9e-29	61.7
QAX22158.1\|3808773_3809619_+	phage recombination protein Bet	A0A1I9KF88	Aeromonas_phage	2.6e-68	58.8
QAX22159.1\|3809615_3810296_+	exonuclease	A0A0M3ULE0	Salmonella_phage	3.9e-123	92.9
QAX22160.1\|3810292_3810721_+	regulator	M9NYX4	Enterobacteria_phage	4.4e-64	81.0
QAX22161.1\|3810717_3811374_+	DNA methyltransferase	G8C7S6	Escherichia_phage	6.3e-110	85.6
QAX22162.1\|3811370_3812447_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	6.2e-139	66.2
QAX22163.1\|3812443_3812662_+	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	2.1e-09	47.2
QAX22164.1\|3812663_3812879_+	conjugal transfer protein TraR	A0A0K2FI84	Escherichia_phage	2.6e-12	51.4
QAX22165.1\|3813092_3814256_+\|integrase	site-specific integrase	G8C7S0	Escherichia_phage	1.1e-202	86.8
QAX22166.1\|3814686_3815553_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
3814271:3814316	attR	NA	NA	NA	NA
QAX22167.1\|3815554_3815767_+	ribosome-associated protein	NA	NA	NA	NA
QAX22168.1\|3815812_3817198_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP026166

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

12490 : 56219

Bacillus_phage(23.53%)

integrase,transposase

attL 9039:9054|attR 59718:59733

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
9039:9054	attL	NA	NA	NA	NA
QAX23708.1\|12490_13273_+\|transposase	transposase	A0A2L1IVB6	Escherichia_phage	3.0e-135	96.1
QAX23709.1\|15619_16057_-	hypothetical protein	NA	NA	NA	NA
QAX23710.1\|16056_17088_-	chromosome partitioning protein ParB	S5WII0	Leptospira_phage	2.9e-08	26.1
QAX23711.1\|17087_17954_-	ParA family protein	NA	NA	NA	NA
QAX23712.1\|18424_18613_-	hypothetical protein	NA	NA	NA	NA
QAX23713.1\|19076_20045_+\|transposase	IS5/IS1182 family transposase	A0A1B0VFY5	Salmonella_phage	2.2e-172	91.3
QAX23714.1\|20159_20318_-	hypothetical protein	A0A0U2RK18	Escherichia_phage	2.2e-05	69.7
QAX23884.1\|20630_21560_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	5.6e-72	52.4
QAX23715.1\|21704_22484_-\|integrase	phage integrase family protein	I3WFA4	Macacine_betaherpesvirus	6.0e-51	89.4
QAX23885.1\|22480_23293_-	hypothetical protein	NA	NA	NA	NA
QAX23716.1\|24225_25200_-	sensor domain-containing diguanylate cyclase	NA	NA	NA	NA
QAX23886.1\|25836_26745_+	HNH endonuclease	NA	NA	NA	NA
QAX23717.1\|27131_27482_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	3.2e-20	53.3
QAX23718.1\|27625_28057_-	silver-binding protein SilE	NA	NA	NA	NA
QAX23719.1\|28307_29783_-	GHKL domain-containing protein	W8CYF6	Bacillus_phage	1.0e-27	30.1
QAX23720.1\|29775_30456_-	DNA-binding response regulator	W8CYM9	Bacillus_phage	1.3e-30	35.7
QAX23721.1\|30645_32031_+	hypothetical protein	NA	NA	NA	NA
QAX23722.1\|32059_32422_+	copper ABC transporter substrate-binding protein	NA	NA	NA	NA
QAX23723.1\|32535_33828_+	efflux RND transporter periplasmic adaptor subunit	NA	NA	NA	NA
QAX23724.1\|33838_36985_+	CusA/CzcA family heavy metal efflux RND transporter	S5VTK5	Leptospira_phage	4.0e-61	22.5
QAX23725.1\|37071_37512_+	hypothetical protein	NA	NA	NA	NA
QAX23726.1\|37638_40086_+	copper-translocating P-type ATPase	A0A218MNH6	uncultured_virus	7.6e-84	35.8
QAX23727.1\|40126_40324_+	DUF2933 domain-containing protein	NA	NA	NA	NA
QAX23728.1\|40357_41095_-	peptidase M23	A0A2H4JAF5	uncultured_Caudovirales_phage	1.2e-11	32.5
QAX23729.1\|41383_41833_-	copper resistance protein	NA	NA	NA	NA
QAX23730.1\|42066_43884_+	multicopper oxidase PcoA	NA	NA	NA	NA
QAX23731.1\|43883_44780_+	copper resistance protein B	NA	NA	NA	NA
QAX23732.1\|44819_45200_+	copper resistance system chaperone PcoC	NA	NA	NA	NA
QAX23733.1\|45204_46134_+	copper resistance protein CopD	NA	NA	NA	NA
QAX23734.1\|46188_46869_+	DNA-binding response regulator	W8CYM9	Bacillus_phage	8.7e-30	34.4
QAX23735.1\|46865_48266_+	two-component sensor histidine kinase	W8CYF6	Bacillus_phage	4.1e-18	26.3
QAX23736.1\|48561_48996_-	Cd(II)/Pb(II)-responsive transcriptional regulator	NA	NA	NA	NA
QAX23737.1\|49081_51487_+	copper-translocating P-type ATPase	E4ZFI9	Streptococcus_phage	1.0e-141	46.1
QAX23738.1\|51483_52560_+	signal peptidase II	NA	NA	NA	NA
QAX23739.1\|52689_53247_+\|transposase	transposase	A0A1B0V7I5	Salmonella_phage	2.6e-48	81.3
QAX23740.1\|53249_56219_+\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.3
59718:59733	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP026165

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP026164

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP026166

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection