CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Prophage number
CP035418	Leisingera sp. NJS204 plasmid unnamed1, complete sequence	0 crisprs	NA	0
CP035419	Leisingera sp. NJS204 plasmid unnamed2, complete sequence	0 crisprs	NA	0
CP035417	Leisingera sp. NJS204 chromosome, complete genome	0 crisprs	csa3,DEDDh,cas3,WYL	5
CP035421	Leisingera sp. NJS204 plasmid unnamed4, complete sequence	0 crisprs	NA	0
CP035424	Leisingera sp. NJS204 plasmid unnamed7, complete sequence	0 crisprs	NA	0
CP035422	Leisingera sp. NJS204 plasmid unnamed5, complete sequence	0 crisprs	NA	0
CP035423	Leisingera sp. NJS204 plasmid unnamed6, complete sequence	0 crisprs	NA	0
CP035420	Leisingera sp. NJS204 plasmid unnamed3, complete sequence	0 crisprs	NA	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

922920 : 951942

Escherichia_phage(33.33%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX28725.1\|922920_923853_-\|transposase	IS5 family transposase	Q9MCT5	Escherichia_phage	5.7e-56	40.8
QAX28726.1\|924539_924779_+	hypothetical protein	NA	NA	NA	NA
QAX28727.1\|925198_926218_-\|transposase	IS110 family transposase	NA	NA	NA	NA
QAX28728.1\|926811_927168_-	hypothetical protein	NA	NA	NA	NA
QAX28729.1\|928708_929446_-\|transposase	IS21 family transposase	K4I413	Acidithiobacillus_phage	1.8e-49	44.8
QAX28730.1\|929780_930821_+\|transposase	IS481 family transposase	A0A077SLK2	Escherichia_phage	1.2e-155	74.5
QAX28731.1\|931396_932476_-	hypothetical protein	NA	NA	NA	NA
QAX28732.1\|932453_933278_-	hypothetical protein	NA	NA	NA	NA
QAX28733.1\|933378_934560_-	AraC family transcriptional regulator	NA	NA	NA	NA
QAX28734.1\|934510_935383_-	hypothetical protein	NA	NA	NA	NA
QAX28735.1\|935648_936260_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QAX28736.1\|936339_937215_+	bile acid:sodium symporter family protein	NA	NA	NA	NA
QAX28737.1\|937299_939375_+	NADPH-dependent 2,4-dienoyl-CoA reductase	NA	NA	NA	NA
QAX28738.1\|939404_940922_+	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
QAX28739.1\|940926_942090_+	2Fe-2S iron-sulfur cluster binding domain-containing protein	NA	NA	NA	NA
QAX28740.1\|942115_943834_+	long-chain fatty acid--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.2e-35	25.4
QAX28741.1\|944099_944564_+	DUF4281 domain-containing protein	NA	NA	NA	NA
QAX28742.1\|944560_945376_+	hypothetical protein	NA	NA	NA	NA
QAX28743.1\|945501_946329_-	LytTR family transcriptional regulator	NA	NA	NA	NA
QAX28744.1\|946557_947337_+	MipA/OmpV family protein	NA	NA	NA	NA
QAX28745.1\|947406_948633_+	fumarylacetoacetate hydrolase	NA	NA	NA	NA
QAX28746.1\|949099_949564_+\|transposase	IS200/IS605 family transposase	A0A1L2BWN1	Bacteriophage	5.2e-10	31.0
QAX28747.1\|950654_951170_-	hypothetical protein	Q6J1X2	Lactobacillus_phage	5.0e-14	36.1
QAX28748.1\|951645_951942_-\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1595397 : 1618286

Thiobacimonas_phage(42.86%)

head,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX29268.1\|1595397_1597818_-	hypothetical protein	A0A0B5A0F2	Paracoccus_phage	1.8e-08	54.9
QAX29269.1\|1597820_1598162_-	hypothetical protein	NA	NA	NA	NA
QAX29270.1\|1598182_1598512_-	hypothetical protein	NA	NA	NA	NA
QAX29271.1\|1598532_1599468_-	hypothetical protein	A0A1B0T6E1	Thiobacimonas_phage	3.1e-78	47.2
QAX29272.1\|1599605_1600034_-	hypothetical protein	NA	NA	NA	NA
QAX29273.1\|1600033_1600462_-	DUF1320 domain-containing protein	M4SPQ8	Rhodobacter_phage	6.9e-33	51.4
QAX29274.1\|1600980_1601871_-	hypothetical protein	M4SRT6	Rhodobacter_phage	1.7e-89	53.5
QAX29275.1\|1601881_1602313_-	hypothetical protein	A0A1B0T6E4	Thiobacimonas_phage	2.3e-36	57.7
QAX29276.1\|1602309_1603392_-	hypothetical protein	A0A1B0T6E7	Thiobacimonas_phage	4.5e-65	44.3
QAX29277.1\|1603508_1604000_-	phage virion morphogenesis protein	A0A1B0T6E8	Thiobacimonas_phage	6.7e-24	39.9
QAX29278.1\|1604072_1605323_-\|head	phage head protein	M4SNU0	Rhodobacter_phage	7.5e-104	48.0
QAX29279.1\|1605315_1606959_-	DUF935 domain-containing protein	A0A1B0T6F2	Thiobacimonas_phage	9.3e-179	59.7
QAX29280.1\|1608881_1609454_-	DUF3486 family protein	A0A1B0T6K5	Pelagibaca_phage	1.2e-43	56.5
QAX29281.1\|1609457_1609757_-	hypothetical protein	NA	NA	NA	NA
QAX29282.1\|1609753_1610131_-	DUF2730 family protein	NA	NA	NA	NA
QAX29283.1\|1610130_1610442_-	hypothetical protein	F4YXP2	Roseobacter_phage	5.2e-06	33.7
QAX29284.1\|1610438_1610969_-	hypothetical protein	A0A2I7S3K6	Vibrio_phage	1.5e-13	32.1
QAX29285.1\|1610965_1611853_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0T6G1	Thiobacimonas_phage	2.7e-100	62.6
QAX29286.1\|1611945_1612338_-	helix-turn-helix domain-containing protein	M4SNV1	Rhodobacter_phage	1.3e-25	51.7
QAX29287.1\|1612324_1612588_-	hypothetical protein	A0A1B1P700	Rhodovulum_phage	1.3e-10	45.7
QAX29288.1\|1612584_1613037_-	regulatory protein GemA	A0A1B0T6H1	Thiobacimonas_phage	6.3e-45	63.7
QAX29289.1\|1613036_1613291_-	hypothetical protein	NA	NA	NA	NA
QAX29290.1\|1613300_1613981_-	DUF3164 family protein	A0A1B0T6L8	Pelagibaca_phage	1.7e-70	61.0
QAX29291.1\|1614094_1614469_-	hypothetical protein	A0A1B0T6G8	Thiobacimonas_phage	1.7e-19	45.5
QAX29292.1\|1614468_1615341_-	hypothetical protein	A0A1B0T6J7	Thiobacimonas_phage	5.7e-10	29.5
QAX29293.1\|1615337_1616081_-	ATP-binding protein	M4SPU5	Rhodobacter_phage	3.4e-43	34.3
QAX29294.1\|1616147_1618286_-\|transposase	transposase	A0A1B0T6N2	Pelagibaca_phage	1.8e-190	49.4

DBSCAN-SWA_3

2114791 : 2153236

uncultured_Mediterranean_phage(18.18%)

transposase,tRNA,tail,capsid,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX29733.1\|2114791_2115823_+\|transposase	IS110 family transposase	NA	NA	NA	NA
QAX29734.1\|2117331_2118726_-	dihydrolipoyl dehydrogenase	NA	NA	NA	NA
QAX29735.1\|2118997_2119576_-	DUF924 domain-containing protein	A0A1V0SIY0	Klosneuvirus	1.9e-14	30.2
QAX29736.1\|2119714_2120989_-	MFS transporter	NA	NA	NA	NA
QAX29737.1\|2121155_2122241_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
QAX29738.1\|2122302_2125779_-	DUF3971 domain-containing protein	NA	NA	NA	NA
QAX29739.1\|2125854_2126316_+	peroxiredoxin	NA	NA	NA	NA
QAX29740.1\|2126560_2127403_+	ferritin-like domain-containing protein	NA	NA	NA	NA
QAX31719.1\|2127589_2128090_+	hypothetical protein	NA	NA	NA	NA
QAX29741.1\|2128302_2129634_+	M23 family peptidase	A8ATH6	Listeria_phage	1.1e-17	45.0
QAX29742.1\|2129623_2130169_+	polymer-forming cytoskeletal protein	NA	NA	NA	NA
QAX29743.1\|2130383_2131628_+	calcium-binding protein	NA	NA	NA	NA
QAX29744.1\|2131679_2132642_-	DUF3179 domain-containing protein	NA	NA	NA	NA
QAX29745.1\|2132814_2133363_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.1e-38	56.9
QAX29746.1\|2133355_2133862_-	peptidylprolyl isomerase	A0A1B1IVS0	uncultured_Mediterranean_phage	1.5e-42	56.9
QAX29747.1\|2134001_2135192_+	phosphoglycerate kinase	NA	NA	NA	NA
QAX29748.1\|2135401_2135701_+	septum formation initiator family protein	NA	NA	NA	NA
QAX29749.1\|2135885_2136902_+	pyruvate dehydrogenase (acetyl-transferring) E1 component subunit alpha	NA	NA	NA	NA
QAX29750.1\|2136901_2137288_+	VOC family protein	NA	NA	NA	NA
QAX29751.1\|2137289_2138660_+	pyruvate dehydrogenase complex E1 component subunit beta	NA	NA	NA	NA
QAX29752.1\|2138671_2139985_+	pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase	NA	NA	NA	NA
QAX29753.1\|2140174_2141239_-	cysteine synthase A	A0A1X9I5F1	Streptococcus_phage	8.1e-67	45.8
QAX29754.1\|2141548_2142370_-	serine O-acetyltransferase	NA	NA	NA	NA
QAX29755.1\|2142679_2142988_-	hypothetical protein	NA	NA	NA	NA
QAX29756.1\|2142984_2146899_-	host specificity protein	A0A0B5A7K5	Paracoccus_phage	8.9e-236	38.4
QAX29757.1\|2146898_2147366_-	peptidase	A0A1V0DYB6	Dinoroseobacter_phage	2.0e-30	46.7
QAX29758.1\|2147362_2148250_-	DUF2163 domain-containing protein	A0A0K0PVK1	Roseobacter_phage	7.5e-58	40.1
QAX29759.1\|2148246_2148879_-	TIGR02217 family protein	A0A0B5A2K3	Paracoccus_phage	1.7e-56	51.0
QAX29760.1\|2148896_2149556_-\|tail	phage tail tape measure protein	D6PFD6	uncultured_phage	1.6e-09	32.5
QAX29761.1\|2149548_2149764_-\|tail	phage tail assembly chaperone	NA	NA	NA	NA
QAX29762.1\|2149760_2150081_-	gene transfer agent family protein	NA	NA	NA	NA
QAX29763.1\|2150084_2150498_-\|tail	phage major tail protein, TP901-1 family	NA	NA	NA	NA
QAX29764.1\|2150544_2150952_-	DUF3168 domain-containing protein	NA	NA	NA	NA
QAX29765.1\|2150948_2151281_-\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
QAX29766.1\|2151277_2151877_-	hypothetical protein	NA	NA	NA	NA
QAX29767.1\|2152054_2153236_-\|capsid	phage major capsid protein	A0A2D1GNH4	Pseudomonas_phage	1.2e-66	38.5

DBSCAN-SWA_4

3932213 : 3941064

Sulfitobacter_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX31313.1\|3932213_3933842_+	hypothetical protein	M4QM83	Sulfitobacter_phage	8.6e-92	36.3
QAX31314.1\|3933838_3934285_+	N-acetyltransferase	M4QQZ5	Sulfitobacter_phage	5.5e-17	33.8
QAX31315.1\|3934271_3936074_+	hypothetical protein	A0A088FAP6	Sulfitobacter_phage	1.8e-10	33.1
QAX31316.1\|3936073_3937795_+	hypothetical protein	X2CYK8	Brucella_phage	5.4e-44	45.2
QAX31317.1\|3937791_3939828_+	hypothetical protein	M4QPL5	Sulfitobacter_phage	2.2e-76	42.9
QAX31318.1\|3939828_3940017_-	hypothetical protein	NA	NA	NA	NA
QAX31319.1\|3940059_3941064_+	hypothetical protein	G8DH61	Emiliania_huxleyi_virus	5.2e-31	35.1

DBSCAN-SWA_5

4233038 : 4243253

Brazilian_cedratvirus(12.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAX31591.1\|4233038_4234634_+	phosphoglycerate dehydrogenase	A0A2R8FDS8	Brazilian_cedratvirus	4.1e-46	38.6
QAX31592.1\|4234727_4235456_+	serine/threonine protein phosphatase	K4JNE2	Caulobacter_virus	9.3e-30	37.4
QAX31821.1\|4235537_4236566_-	L-threonine 3-dehydrogenase	R9TPW0	Vibrio_phage	4.5e-14	66.7
QAX31593.1\|4236580_4237768_-	glycine C-acetyltransferase	D2TEZ5	Emiliania_huxleyi_virus	4.4e-37	29.6
QAX31594.1\|4237930_4238332_+	VOC family protein	NA	NA	NA	NA
QAX31595.1\|4238419_4238626_-	cold-shock protein	A0A1W6JNX5	Morganella_phage	7.1e-12	58.9
QAX31596.1\|4238951_4239518_-	XRE family transcriptional regulator	I3VYZ1	Thermoanaerobacterium_phage	4.3e-06	42.9
QAX31597.1\|4239691_4240867_+	acetyl-CoA C-acyltransferase	NA	NA	NA	NA
QAX31598.1\|4240967_4242497_-	2-polyprenylphenol 6-hydroxylase	A0A2P0VMP1	Tetraselmis_virus	3.1e-19	25.3
QAX31599.1\|4242500_4243253_-	bifunctional demethylmenaquinone methyltransferase/2-methoxy-6-polyprenyl-1,4-benzoquinol methylase UbiE	A0A097BYE1	Leuconostoc_phage	1.8e-07	25.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage