CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP035483	Escherichia coli strain U13A plasmid pU13A_F, complete sequence	0 crisprs	NA	0	0
CP035480	Escherichia coli strain U13A plasmid pU13A_C, complete sequence	0 crisprs	NA	0	0
CP035481	Escherichia coli strain U13A plasmid pU13A_D, complete sequence	0 crisprs	NA	0	0
CP035477	Escherichia coli strain U13A chromosome, complete genome	2 crisprs	DinG,cas3,RT,DEDDh,c2c9_V-U4,csa3,WYL	1	16
CP035482	Escherichia coli strain U13A plasmid pU13A_E, complete sequence	0 crisprs	NA	0	0
CP035479	Escherichia coli strain U13A plasmid pU13A_B, complete sequence	0 crisprs	NA	0	0
CP035478	Escherichia coli strain U13A plasmid pU13A_A, complete sequence	0 crisprs	RT	0	2

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP035477_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035477_1

766799-766940

Orphan

Consensus_repeat	Method
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035477_1

>merge|CP035477|1|766799-766940|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAGAAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGCGCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

>CP035477|1|1|766799-766940|CRISPRCasFinder
GCCGGATGCGGCGTGAACGCCTTATCCGGCCTACAAAAGAAATGCAG	AAACCGTAGGCCTGATAAGACGCGCAAGCGTCGCATCAGGCAAACAGC
GCCGGATGCGGCGTGAATGCCTTATCCGGCCTACAAAAGAAATGCAG

Protein	Signature genes	Signature genes Name	Protein_function
CP035477.1\|QAY48210.1\|772406_773276_+\|Succinate--CoA-ligase-[ADP-forming]-subunit-alpha	unknown	unknown	gnl\|CDD\|180194
CP035477.1\|QAY48206.1\|766035_766752_+\|Succinate-dehydrogenase-iron-sulfur-subunit	unknown	unknown	gnl\|CDD\|235652
CP035477.1\|QAY48213.1\|776204_778838_+\|Mannosylglycerate-hydrolase	unknown	unknown	gnl\|CDD\|182093
CP035477.1\|QAY48204.1\|763906_764254_+\|Succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	unknown	unknown	gnl\|CDD\|181901
CP035477.1\|QAY48201.1\|761531_762815_-\|Citrate-synthase	unknown	unknown	gnl\|CDD\|180164
CP035477.1\|QAY48211.1\|773379_774102_-\|Mannosyl-D-glycerate-transport/metabolism-system-repressor-MngR	unknown	unknown	gnl\|CDD\|182065
CP035477.1\|QAY48216.1\|783355_784495_+\|Cytochrome-bd-I-ubiquinol-oxidase-subunit-2	unknown	unknown	gnl\|CDD\|184965
CP035477.1\|QAY48200.1\|760174_761485_+\|Sialic-acid-TRAP-transporter-large-permease-protein-SiaM	unknown	unknown	gnl\|CDD\|224509
CP035477.1\|QAY48198.1\|758685_759654_+\|Sialic-acid-binding-periplasmic-protein-SiaP	unknown	unknown	gnl\|CDD\|270387
CP035477.1\|QAY48207.1\|767113_769915_+\|2-oxoglutarate-dehydrogenase-E1-component	unknown	unknown	gnl\|CDD\|236499
CP035477.1\|QAY48203.1\|763508_763913_+\|Succinate-dehydrogenase-cytochrome-b556-subunit	unknown	unknown	gnl\|CDD\|181900
CP035477.1\|QAY48208.1\|769929_771147_+\|Dihydrolipoyllysine-residue-succinyltransferase-component-of-2-oxoglutarate-dehydrogenase-complex	unknown	unknown	gnl\|CDD\|235571
CP035477.1\|QAY48197.1\|757461_758658_+\|(2R)-sulfolactate-sulfo-lyase-subunit-beta	unknown	unknown	gnl\|CDD\|377287
CP035477.1\|QAY48212.1\|774270_776187_+\|PTS-system-2-O-alpha-mannosyl-D-glycerate-specific-EIIABC-component	unknown	unknown	gnl\|CDD\|182066
CP035477.1\|QAY48205.1\|764253_766020_+\|Succinate-dehydrogenase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|181594
CP035477.1\|QAY48214.1\|779035_780229_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|276809
CP035477.1\|QAY48209.1\|771240_772407_+\|Succinate--CoA-ligase-[ADP-forming]-subunit-beta	unknown	unknown	gnl\|CDD\|234813
CP035477.1\|QAY48202.1\|763020_763128_-\|hypothetical-protein	unknown	unknown	unknown
CP035477.1\|QAY48199.1\|759713_760175_+\|Sialic-acid-TRAP-transporter-permease-protein-SiaT	unknown	unknown	gnl\|CDD\|225632
CP035477.1\|QAY48215.1\|781771_783340_+\|Cytochrome-bd-I-ubiquinol-oxidase-subunit-1	unknown	unknown	gnl\|CDD\|185052

Protein	Function_ID	Function_description	E-value
CP035477.1\|QAY48210.1\|772406_773276_+\|Succinate--CoA-ligase-[ADP-forming]-subunit-alpha	gnl\|CDD\|180194	PRK05678, PRK05678, succinyl-CoA synthetase subunit alpha; Validated.	0
CP035477.1\|QAY48206.1\|766035_766752_+\|Succinate-dehydrogenase-iron-sulfur-subunit	gnl\|CDD\|235652	PRK05950, sdhB, succinate dehydrogenase iron-sulfur subunit; Reviewed.	3.48257e-167
CP035477.1\|QAY48205.1\|764253_766020_+\|Succinate-dehydrogenase-flavoprotein-subunit	gnl\|CDD\|181594	PRK08958, sdhA, succinate dehydrogenase flavoprotein subunit; Reviewed.	0
CP035477.1\|QAY48204.1\|763906_764254_+\|Succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit	gnl\|CDD\|181901	PRK09488, sdhD, succinate dehydrogenase membrane anchor subunit.	5.54037e-58
CP035477.1\|QAY48201.1\|761531_762815_-\|Citrate-synthase	gnl\|CDD\|180164	PRK05614, gltA, citrate synthase.	0
CP035477.1\|QAY48213.1\|776204_778838_+\|Mannosylglycerate-hydrolase	gnl\|CDD\|182093	PRK09819, PRK09819, mannosylglycerate hydrolase.	0
CP035477.1\|QAY48216.1\|783355_784495_+\|Cytochrome-bd-I-ubiquinol-oxidase-subunit-2	gnl\|CDD\|184965	PRK15003, PRK15003, cytochrome d ubiquinol oxidase subunit II.	0
CP035477.1\|QAY48208.1\|769929_771147_+\|Dihydrolipoyllysine-residue-succinyltransferase-component-of-2-oxoglutarate-dehydrogenase-complex	gnl\|CDD\|235571	PRK05704, PRK05704, 2-oxoglutarate dehydrogenase complex dihydrolipoyllysine-residue succinyltransferase.	0
CP035477.1\|QAY48198.1\|758685_759654_+\|Sialic-acid-binding-periplasmic-protein-SiaP	gnl\|CDD\|270387	cd13669, PBP2_TRAP_TM0322_like, Periplasmic component of TRAP-type C4-dicarboxylate transport system TM0322 from Thermotoga maritima and similar proteins; the type 2 periplasmic binding protein fold. This subgroup includes the hyperthermophilic bacterium Thermotoga maritima TRAP-type C4-dicarboxylate transport system TM0322 and its closely related proteins. TRAP transporters are a large family of solute transporters ubiquitously found in bacteria and archaea. They are comprised of a periplasmic substrate-binding protein (SBP; often called the P subunit) and two unequally sized integral membrane components: a large transmembrane subunit involved in the translocation process (the M subunit) and a smaller membrane of unknown function (the Q subunit). The driving force of TRAP transporters is provided by electrochemical ion gradients (either protons or sodium ions) across the cytoplasmic membrane, rather than ATP hydrolysis. This substrate-binding domain belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.46494e-145
CP035477.1\|QAY48207.1\|767113_769915_+\|2-oxoglutarate-dehydrogenase-E1-component	gnl\|CDD\|236499	PRK09404, sucA, 2-oxoglutarate dehydrogenase E1 component; Reviewed.	0
CP035477.1\|QAY48203.1\|763508_763913_+\|Succinate-dehydrogenase-cytochrome-b556-subunit	gnl\|CDD\|181900	PRK09487, sdhC, succinate dehydrogenase cytochrome b556 subunit.	3.50714e-82
CP035477.1\|QAY48197.1\|757461_758658_+\|(2R)-sulfolactate-sulfo-lyase-subunit-beta	gnl\|CDD\|377287	pfam04295, GD_AH_C, D-galactarate dehydratase / Altronate hydrolase, C-terminus. Family members include the C termini of D-galactarate dehydratase (EC:4.2.1.42) which is thought to catalyze the reaction D-galactarate = 5-keto-4-deoxy-D-glucarate + H2O, and altronate hydrolase (altronic acid hydratase, EC:4.2.1.7), which catalyzes D-altronate = 2-keto-2-deoxygluconate + H2O. As purified, both enzymes are catalytically inactive in the absence of added Fe2+, Mn2+, and beta-mercaptoethanol. Synergistic activation of altronate hydrolase activity is seen in the presence of both iron and manganese ions, suggesting that the enzyme may have two ion binding sites. Mn2+ appears to be part of the enzyme active centre, but the function of the single bound Fe2+ ion is unknown. The hydratase has no Fe-S core.	5.6924e-134
CP035477.1\|QAY48212.1\|774270_776187_+\|PTS-system-2-O-alpha-mannosyl-D-glycerate-specific-EIIABC-component	gnl\|CDD\|182066	PRK09765, PRK09765, PTS system 2-O-a-mannosyl-D-glycerate specific transporter subunit IIABC; Provisional.	0
CP035477.1\|QAY48200.1\|760174_761485_+\|Sialic-acid-TRAP-transporter-large-permease-protein-SiaM	gnl\|CDD\|224509	COG1593, DctQ, TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism].	2.11617e-118
CP035477.1\|QAY48214.1\|779035_780229_+\|hypothetical-protein	gnl\|CDD\|276809	sd00006, TPR, Tetratricopeptide repeat. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. The number of TPR motifs varies among proteins. Those containing 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accommodate an alpha-helix of a target protein. It has been proposed that TPR proteins preferentially interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes.	1.01578e-17
CP035477.1\|QAY48209.1\|771240_772407_+\|Succinate--CoA-ligase-[ADP-forming]-subunit-beta	gnl\|CDD\|234813	PRK00696, sucC, ADP-forming succinate--CoA ligase subunit beta.	0
CP035477.1\|QAY48211.1\|773379_774102_-\|Mannosyl-D-glycerate-transport/metabolism-system-repressor-MngR	gnl\|CDD\|182065	PRK09764, PRK09764, GntR family transcriptional regulator.	1.54929e-163
CP035477.1\|QAY48199.1\|759713_760175_+\|Sialic-acid-TRAP-transporter-permease-protein-SiaT	gnl\|CDD\|225632	COG3090, DctM, TRAP-type C4-dicarboxylate transport system, small permease component [Carbohydrate transport and metabolism].	2.66483e-21
CP035477.1\|QAY48215.1\|781771_783340_+\|Cytochrome-bd-I-ubiquinol-oxidase-subunit-1	gnl\|CDD\|185052	PRK15097, PRK15097, cytochrome bd-I ubiquinol oxidase subunit CydA.	0

>CP035477.1|QAY48206.1|766035_766752_+|Succinate-dehydrogenase-iron-sulfur-subunit
MRLEFSIYRYNPDVDDAPRMQDYTLEAEEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNMNGKNGLACITPISALNQPGKKIVIRPLPGLPVIRDLVVDMGQFYAQYEKIKPYLLNNGQNPPAREHLQMPEQREKLDGLYECILCACCSTSCPSFWWNPDKFIGPAGLLAAYRFLIDSRDTETDSRLDGLSDAFSVFRCHSIMNCVSVCPKGLNPTRAIGHIKSMLLQRNA
>CP035477.1|QAY48205.1|764253_766020_+|Succinate-dehydrogenase-flavoprotein-subunit
MKLPVREFDAVVIGAGGAGMRAALQISQSGQTCALLSKVFPTRSHTVSAQGGITVALGNTHEDNWEWHMYDTVKGSDYIGDQDAIEYMCKTGPEAILELEHMGLPFSRLDDGRIYQRPFGGQSKNFGGEQAARTAAAADRTGHALLHTLYQQNLKNHTTIFSEWYALDLVKNQDGAVVGCTALCIETGEVVYFKARATVLATGGAGRIYQSTTNAHINTGDGVGMAIRAGVPVQDMEMWQFHPTGIAGAGVLVTEGCRGEGGYLLNKHGERFMERYAPNAKDLAGRDVVARSIMIEIREGRGCDGPWGPHAKLKLDHLGKEVLESRLPGILELSRTFAHVDPVKEPIPVIPTCHYMMGGIPTKVTGQALTVNEKGEDVVVPGLFAVGEIACVSVHGANRLGGNSLLDLVVFGRAAGLHLQESIAEQGALRDASESDVEASLDRLNRWNNNRNGEDPVAIRKALQECMQHNFSVFREGDAMAKGLEQLKVIRERLKNARLDDTSSEFNTQRVECLELDNLMETAYATAVSANFRTESRGAHSRFDFPDRDDENWLCHSLYLPESESMTRRSVNMEPKLRPAFPPKIRTY
>CP035477.1|QAY48204.1|763906_764254_+|Succinate-dehydrogenase-hydrophobic-membrane-anchor-subunit
MVSNASALGRNGVHDFILVRATAIVLTLYIIYMVGFFATSGELTYEVWIGFFASAFTKVFTLLALFSILIHAWIGMWQVLTDYVKPLALRLMLQLVIVVALVVYVIYGFVVVWGV
>CP035477.1|QAY48203.1|763508_763913_+|Succinate-dehydrogenase-cytochrome-b556-subunit
MWALFMIRNVKKQRPVNLDLQTIRFPVTAIASILHRVSGVITFVAVGILLWLLGTSLSSPEGFEQASAIMGSFFVKFIMWGILTALAYHVVVGIRHMMMDFGYLEETFEAGKRSAKISFVITVVLSLLAGVLVW
>CP035477.1|QAY48202.1|763020_763128_-|hypothetical-protein
MRKSYEVGISPKINLCNSVEVLTNSFGTVISGRQV
>CP035477.1|QAY48201.1|761531_762815_-|Citrate-synthase
MADTKAKLTLNGDTAVELDVLKGTLGQDVIDIRTLGSKGVFTFDPGFTSTASCESKITFIDGDEGILLHRGFPIDQLATDSNYLEVCYILLNGEKPTQEQYDEFKTTVTRHTMIHEQITRLFHAFRRDSHPMAVMCGITGALAAFYHDSLDVNNPRHREIAAFRLLSKMPTMAAMCYKYSIGQPFVYPRNDLSYAGNFLNMMFSTPCEPYEVNPILERAMDRILILHADHEQNASTSTVRTAGSSGANPFACIAAGIASLWGPAHGGANEAALKMLEEISSVKHIPEFVRRAKDKNDSFRLMGFGHRVYKNYDPRATVMRETCHEVLKELGTKDDLLEVAMELENIALNDPYFIEKKLYPNVDFYSGIILKAMGIPSSMFTVIFAMARTVGWIAHWSEMHSDGMKIARPRQLYTGYAQRDFKSDIKK
>CP035477.1|QAY48200.1|760174_761485_+|Sialic-acid-TRAP-transporter-large-permease-protein-SiaM
MTALSELLAGSWLDNWLMIIPLMFVCLFINMPVWLAMFCGILTYFLCYSNVPLMVAIQRLIATTQTPSLLAIPFFILLGTLMSYTGIAARILQIANVLIGRMRGGLGGANILVSTMMGGVSASNLADAAMLSRMMVPEMEQKGYSRGFAAAITASGSLITPIIPPGIALILYGLVADVSIGSMFMAGILPGLLCSAMLIVTVWLVAIRRGLKPSSEHWPKPKEVSVALVQAWPALFLIVAVIGGIRANIFTPTEAGAVAVLLVMFIGFVIYRELKISHVFTALSETARSTASVMLIIMASAALGWIFSLERAGITVAEFVTSLTDNKYVFLLIINLLLLVLGMFLEGSAILLILVPLLKPVVAHFGIDPVHFGIIMILNLSLGTLSPPVGTVMLLVCNTVQVSVGQFMREAVPLLISLILLLLVITYIPAISLLLV
>CP035477.1|QAY48199.1|759713_760175_+|Sialic-acid-TRAP-transporter-permease-protein-SiaT
MRLLGKMIEVAAVLTLFILVIMTIAAVIMRYCFHMPLQWTEEVSGLLMIWVVMFGAVVAERDNTHLSIPFLADALTSRGQRILAFLVSLMSIILLVVMAWSAWKLAAGTAFKTTQILKISWFWIDIAVTVGAIGVACFTALQLIKKTPRKEGE
>CP035477.1|QAY48198.1|758685_759654_+|Sialic-acid-binding-periplasmic-protein-SiaP
MKKLLTPLLFLLALFSPMLNAAPVTIKIAYESNPGEPADTVVKHWAELVKKKSNGDIVFELYPSSQLGSKQDITEQALMGMNIITISDVGFLTDYDADLGILFGPYLTEDPQKLFAIYASDWFKQKEQKLREKGVHIVMSNYLYGTRQIIAKKPIRTPEDLKGMKIRVPNNVMQIKAIEAMGATPTPMPLGDVYPALTQGMIDGVENPVSVLYGQKLHEQAKYLSMVNYLTNTSLWLGGEAFFSTLTPAQLDIIHQTAYEAGLYSQKITTEQDATMLKTMQEQGVEIIYPDVAPFKEKALKVYQQFPEWTPGLYDTIQQQLK
>CP035477.1|QAY48197.1|757461_758658_+|(2R)-sulfolactate-sulfo-lyase-subunit-beta
MEGYVRQNGRPGIRNTVQVIFMVECASHVAKKIAEGFPCHDVQYFGFSGCYPSDYGYRLVKNLATHSNVGGVLIISLGCENFDRRRLEQEVRESGRPCHTLVIQENKGTTNTITLGKQLVAEMLEQLADTPRCILNWSDLVVGTICGGSDGTSGITGNPAVGRAFDQLLEKGATCIFEESGELLGCEQHMMSRAASSQARDAIEVAMTKAERYYSLMGLGSFSNGNAEGGLTTQEEKSLGAYTKSGDALIAGVILPTQQTPFPGLWLMDVVPDGEPRFGYPNINDSSEALELIASGCHMVLFTTGRGSVIGSVIAPIIKVCNNPQTWEHLSDDMDVNAGRVISEGATLDDIADDIMQVIEHVANGQYCAAERLEHQEFVLTYKAFDYSKSAVCRADPR
>CP035477.1|QAY48207.1|767113_769915_+|2-oxoglutarate-dehydrogenase-E1-component
MQNSALKAWLDSSYLSGANQSWIEQLYEDFLTDPDSVDANWRSTFQQLPGTGVKPDQFHSQTREYFRRLAKDASRYSSTISDPDTNVKQVKVLQLINAYRFRGHQHANLDPLGLWQQDKVADLDPSFHDLTEADFQETFNVGSFASGKETMKLGELLEALKQTYCGPIGAEYMHITSTEEKRWIQQRIESGRATFNSEEKKRFLSELTAAEGLERYLGAKFPGAKRFSLEGGDALIPMLKEMIRHAGNSGTREVVLGMAHRGRLNVLVNVLGKKPQDLFDEFAGKHKEHLGTGDVKYHMGFSSDFQTDGGLVHLALAFNPSHLEIVSPVVIGSVRARLDRLDEPSSNKVLPITIHGDAAVTGQGVVQETLNMSKARGYEVGGTVRIVINNQVGFTTSNPLDARSTPYCTDIGKMVQAPIFHVNADDPEAVAFVTRLALDFRNTFKRDVFIDLVCYRRHGHNEADEPSATQPLMYQKIKKHPTPRKIYADKLEQEKVATLEDATEMVNLYRDALDAGDCVVAEWRPMNMHSFTWSPYLNHEWDEEYPNKVEMKRLQELAKRISTVPEAVEMQSRVAKIYGDRQAMAAGEKLFDWGGAENLAYATLVDEGIPVRLSGEDSGRGTFFHRHAVIHNQSNGSTYTPLQHIHNGQGAFRVWDSVLSEEAVLAFEYGYATAEPRTLTIWEAQFGDFANGAQVVIDQFISSGEQKWGRMCGLVMLLPHGYEGQGPEHSSARLERYLQLCAEQNMQVCVPSTPAQVYHMLRRQALRGMRRPLVVMSPKSLLRHPLAVSSLEELANGTFLPAISEIDELDPKGVKRVVMCSGKVYYDLLEQRRKNNQHDVAIVRIEQLYPFPHKAMQEVLQQFAHVKDFVWCQEEPLNQGAWYCSQHHFREVIPFGASLRYAGRPASASPAVGYMSVHQKQQQDLVNDALNVE
>CP035477.1|QAY48208.1|769929_771147_+|Dihydrolipoyllysine-residue-succinyltransferase-component-of-2-oxoglutarate-dehydrogenase-complex
MSSVDILVPDLPESVADATVATWHKKPGDVVVRDEVLVEIETDKVVLEVPASADGILDAVLEDEGTTVTSRQILGRLREGNSAGKETSAKSEEKASTPAQRQQASLEEQNNDALSPAIRRLLAEHNLDASAIKGTGVGGRLTREDVEKHLAKAPAKESAPAAAAPAAQPALAARSEKRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV
>CP035477.1|QAY48209.1|771240_772407_+|Succinate--CoA-ligase-[ADP-forming]-subunit-beta
MNLHEYQAKQLFARYGLPAPVGYACTTPREAEEAASKIGAGPWVVKCQVHAGGRGKAGGVKVVNSKEDIRAFAENWLGKRLVTYQTDANGQPVNQILVEAATDIAKELYLGAVVDRSSRRVVFMASTEGGVEIEKVAEETPHLIHKVALDPLTGPMPYQGRELAFKLGLEGKLVQQFTKIFMGLATIFLERDLALIEINPLVITKQGDLICLDGKLGADGNALFRQPDLREMRDQSQEDPREAQAAQWELNYVALDGNIGCMVNGAGLAMGTMDIVKLHGGEPANFLDVGGGATKERVTEAFKIILSDDKVKAVLVNIFGGIVRCDLIADGIIGAVAEVGVNVPVVVRLEGNNAELGAKKLADSGLNIIAAKGLTDAAQQVVAAVEGK
>CP035477.1|QAY48210.1|772406_773276_+|Succinate--CoA-ligase-[ADP-forming]-subunit-alpha
MSILIDKNTKVICQGFTGSQGTFHSEQAIAYGTKMVGGVTPGKGGTTHLGLPVFNTVREAVAATGATASVIYVPAPFCKDSILEAIDAGIKLIITITEGIPTLDMLTVKVKLDEAGVRMIGPNCPGVITPGECKIGIQPGHIHKPGKVGIVSRSGTLTYEAVKQTTDYGFGQSTCVGIGGDPIPGSNFIDILEMFEKDPQTEAIVMIGEIGGSAEEEAAAYIKEHVTKPVVGYIAGVTAPKGKRMGHAGAIIAGGKGTADEKFAALEAAGVKTVRSLADIGEALKTVLK
>CP035477.1|QAY48211.1|773379_774102_-|Mannosyl-D-glycerate-transport/metabolism-system-repressor-MngR
MGHKPLYRQIADRIREQITCGELKPGDALPTESALQTEFGVSRVTVRQALRQLVEQQILESIQGSGTYVKEERVNYDIFQLTSFDEKLSDRHVETHSEVLIFEVIPADNFLQQQLQISEQDRVWHVKRVRYRKQKPVALEETWMPLALFPDLTWQVMENSKYHFIEEVKKMVIDRSEQEIIPLMPTEEMSRLLNISQTKPILEKVSRGYLVDGQVFEYSRNAFNTDDYKFTLIAQRKSPR
>CP035477.1|QAY48212.1|774270_776187_+|PTS-system-2-O-alpha-mannosyl-D-glycerate-specific-EIIABC-component
MNLTTLTHRDALCLNVRFTSREEAIHALTQRLAALGKISSTEQFLEEVYCRESLGPTALGEGLAVPHGKTAAVKEAAFAVATLSEPLQWEGVDGPEAVDLVVLLAIPPNEAGTTHMKLLTALTTRLADDELRARIQSATTPDELLSALDDKGDAQHTASFSYAPTIVCVTACPAGIAHTYMAAEYLEKAGRKLGVNIYVEKQGANGIEERLTAEQLNSATACIFAAEVAIKESERFNGIPALSVPVAEPIRHAEALIQQALTLKRSDETRTVQQDTQPVKSVKTELKQALLSGISFAVPLIVAGGTVLAVAVLLSQIFGLQDLFNEENSWLWMYRKLGGGMLGILMVPVLAAYTAYSLADKPALAPGFAAGLAANMIGSGFLGAVVGGLIAGYLMRWVKNHLRLSSKFNGFLTFYLYPVLGTLGAGSLMLFVVGEPVAWINNSLTAWLNGLSGNNALLLGAILGFMCSFDLGGPVNKAAYAFCLGAMANGVYGPYAIFASVKMVSAFTVTASTMLAPRLFKEFEIETGKSTWLLGLAGITEGAIPMAIEDPLRVIGSFVLGSMVTGAIVGAMNIGLSTPGAGIFSLFLLHDNGAGGVMAAIGWFGAALVGAAISTAILLIWRHHAVKHGNYLTDGVMP
>CP035477.1|QAY48213.1|776204_778838_+|Mannosylglycerate-hydrolase
MKAVSRVHITPHMHWDREWYFTTEESRILLVNNMEEILCRLEQDNEYKYYVLDGQTAILEDYFAVKPENKDRVKKLVEGGKLIIGPWYTQTDTTIVSAESIVRNLMYGMRDCLAFGEPMKIGYLPDSFGMSGQLPHIYNGFGITRTMFWRGCSERHGTDKTEFLWQSSDGSEVTAQVLPLGYAIGKYLPADENGLRKRLDSYFDVLEKASVTKEILLPNGHDQMPLQQNIFEVMEKLREIYPQRKFVMSRFEEVFEQIEAQRESLAILKGEFIDGKYMRVHRTIGSTRMDIKIAHARIENKIVNLLEPLATLAWTLGFDYHHGLLEKMWKEILKNHAHDSIGCCCSDKVHREIVARFELAEDMADNLIRFYMRKIADNMPQSDADKLVLFNLMPWPREEVINTTVRLRGSQFNLRDGRGQPVPYFIRHAREIDPGLIDRQIVHYGNYDPFMEFDIQISQIVPSMGYRTLYIEANQLGNVVTPKSKTEGILENAFWQIALNEDGSLRLVDKDSGVRYDRVFQIEEGSDDGDEYDYSPAKEEWAITSANAKPQYDIIHEAWQSRAIIRYEIAVPRNLSERRAKQCSGRVGVETVITLSHNSRRIDADINLDNQADDHRIRVLIPTPFNTDVVLADTQFGSLTRPVKDCAMNVWQQEGWKEAPVPVWNMLNYAVLQEGRNGIAVFSEGLREFEVIGEENKTFAITLLRGVGLLGKEDLLLRPGRPSGIKMPVSDSQLRGSFSCRLSLFSYIGTPVTAGVAQQARAWLTPVQCYNKIPWDAMKLNKAKFNVPESYSLLKMPPVGCLISALKKAEDRQELILRLFNPAELTSCDATVAFSRKVMTCTETMMNERFNTEKNEVLKELALFLPGQSRTFSYRIV
>CP035477.1|QAY48214.1|779035_780229_+|hypothetical-protein
MKKIVLPVALALLGMNAGAYAADVSIDILSATVKDKRIEGASVTLQRNGAQSVSGITNTSGSISLGTSFADNKDALLIVKKEGYSNLVVKCPCAGMTYAISPVMTNLDGMRVVLSWGEKPFDLDSHLIFPGGHIYFDSKEGTDANLDVDDTDSYGPETVTISKKHFGESYIYAVQDYSNKGLPNSNYLSASKAKVFVYVGSSLVRSYSVPAGKRGNIWTVFKLNPNGEFEDINSVTSANFNGTTLDVRDLATVIMPATDSSAPASPAMQNSGDTQLARKYNREGEAVYKTGQLEQAIQLFQQATELDGNYGQAFSNLGLAYQKNGNIAEAIWANRKAISLASGVNAATTRANSYYNIAKIYETSGQNAEALQHYQLAYTEKNKPSYEEAIARVKTKM
>CP035477.1|QAY48215.1|781771_783340_+|Cytochrome-bd-I-ubiquinol-oxidase-subunit-1
MLDIVELSRLQFALTAMYHFLFVPLTLGMAFLLAIMETVYVLSGKQIYKDMTKFWGKLFGINFALGVATGLTMEFQFGTNWSYYSHYVGDIFGAPLAIEGLMAFFLESTFVGLFFFGWDRLGKVQHMCVTWLVALGSNLSALWILVANGWMQNPIASDFNFETMRMEMVSFSELVLNPVAQVKFVHTVASGYVTGAMFILGISAWYMLKGRDFAFAKRSFAIAASFGMAAVLSVIVLGDESGYEMGDVQKTKLAAIEAEWETQPAPAAFTLFGIPDQEEETNKFAIQIPYALGIIATRSVDTPVIGLKELMVQHEERIRNGMKAYSLLEQLRSGSTDQAVRDQFNSMKKDLGYGLLLKRYTPNVADATEAQIQQATKDSIPRVAPLYFAFRIMVACGFLLLAIIALSFWSVIRNRIGEKKWLLRAALYGIPLPWIAVEAGWFVAEYGRQPWAIGEVLPTAVANSSLTAGDLIFSMVLICGLYTLFLVAELFLMFKFARLGPSSLKTGRYHFEQSSTTTQPAR
>CP035477.1|QAY48216.1|783355_784495_+|Cytochrome-bd-I-ubiquinol-oxidase-subunit-2
MIDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQVWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDWGIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMIITQGATYLQMRTVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAASNPLNKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTLACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCYWKMFGRITKEDIERNTHSLY

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Crispr_ID: CP035477_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035477_2

933006-933088

Orphan

I-F

Consensus_repeat	Method
AGTTCACTGCCGTACAGGCAGCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035477_2

>merge|CP035477|2|933006-933088|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCTTAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACAAGTTCACTGCCGTACAGGCAGAT

>CP035477|2|2|933006-933088|CRISPRCasFinder
AGTTCACTGCCGTACAGGCAGCT	TAGAAATTGCCGCGGATCCTGTCTGCCAATAATGACA
AGTTCACTGCCGTACAGGCAGAT

Protein	Signature genes	Signature genes Name	Protein_function
CP035477.1\|QAY48354.1\|927600_929547_+\|Macrolide-export-ATP-binding/permease-protein-MacB	unknown	unknown	gnl\|CDD\|182528
CP035477.1\|QAY48365.1\|944741_945353_+\|Outer-membrane-lipoprotein-carrier-protein	unknown	unknown	gnl\|CDD\|129638
CP035477.1\|QAY48364.1\|940476_944583_+\|DNA-translocase-FtsK	unknown	unknown	gnl\|CDD\|236669
CP035477.1\|QAY48348.1\|919496_921149_-\|Hydroxylamine-reductase	unknown	unknown	gnl\|CDD\|235391
CP035477.1\|QAY48362.1\|938338_939409_-\|Thioredoxin-reductase	unknown	unknown	gnl\|CDD\|182343
CP035477.1\|QAY48351.1\|923726_925385_+\|DNA-replication-and-repair-protein-RecF	unknown	unknown	gnl\|CDD\|226121
CP035477.1\|QAY48355.1\|929619_929844_-\|Cold-shock-like-protein-CspD	unknown	unknown	gnl\|CDD\|77494
CP035477.1\|QAY48353.1\|926506_927604_+\|Macrolide-export-protein-MacA	unknown	unknown	gnl\|CDD\|183211
CP035477.1\|QAY48360.1\|934727_936449_-\|Lipid-A-export-ATP-binding/permease-protein-MsbA	unknown	unknown	gnl\|CDD\|236865
CP035477.1\|QAY48352.1\|925381_926374_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225537
CP035477.1\|QAY48361.1\|936449_938216_-\|ATP-binding/permease-protein-CydD	unknown	unknown	gnl\|CDD\|236870
CP035477.1\|QAY48366.1\|945363_946707_+\|Replication-associated-recombination-protein-A	unknown	unknown	gnl\|CDD\|237355
CP035477.1\|QAY48358.1\|933478_933697_-\|Translation-initiation-factor-IF-1	unknown	unknown	gnl\|CDD\|178954
CP035477.1\|QAY48363.1\|939847_940342_+\|Leucine-responsive-regulatory-protein	unknown	unknown	gnl\|CDD\|183009
CP035477.1\|QAY48349.1\|921292_922192_-\|Lysine-exporter-LysO	unknown	unknown	gnl\|CDD\|225287
CP035477.1\|QAY48367.1\|946797_948090_+\|Serine--tRNA-ligase	unknown	unknown	gnl\|CDD\|235461
CP035477.1\|QAY48357.1\|930517_932794_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	unknown	unknown	gnl\|CDD\|236828
CP035477.1\|QAY48350.1\|922606_923302_-\|Aquaporin-Z	unknown	unknown	gnl\|CDD\|235453
CP035477.1\|QAY48359.1\|933981_934686_-\|Leucyl/phenylalanyl-tRNA--protein-transferase	unknown	unknown	gnl\|CDD\|234720
CP035477.1\|QAY48356.1\|930166_930487_+\|ATP-dependent-Clp-protease-adapter-protein-ClpS	unknown	unknown	gnl\|CDD\|178809

Protein	Function_ID	Function_description	E-value
CP035477.1\|QAY48354.1\|927600_929547_+\|Macrolide-export-ATP-binding/permease-protein-MacB	gnl\|CDD\|182528	PRK10535, PRK10535, macrolide ABC transporter ATP-binding protein/permease MacB.	0
CP035477.1\|QAY48365.1\|944741_945353_+\|Outer-membrane-lipoprotein-carrier-protein	gnl\|CDD\|129638	TIGR00547, Outer-membrane_lipoprotein_carrier_protein, periplasmic chaperone LolA. This protein, LolA, is known so far only in the gamma and beta subdivisions of the Proteobacteria. The E. coli major outer lipoprotein (Lpp) of E. coli is released from the inner membrane as a complex with this chaperone in an energy-requiring process, and is then delivered to LolB for insertion into the outer membrane. LolA is involved in the delivery of lipoproteins generally, rather than just Lpp, and is an essential protein in E. coli, unlike Lpp itself. [Protein fate, Protein and peptide secretion and trafficking].	1.48786e-125
CP035477.1\|QAY48364.1\|940476_944583_+\|DNA-translocase-FtsK	gnl\|CDD\|236669	PRK10263, PRK10263, DNA translocase FtsK; Provisional.	0
CP035477.1\|QAY48348.1\|919496_921149_-\|Hydroxylamine-reductase	gnl\|CDD\|235391	PRK05290, PRK05290, hybrid cluster protein; Provisional.	0
CP035477.1\|QAY48362.1\|938338_939409_-\|Thioredoxin-reductase	gnl\|CDD\|182343	PRK10262, PRK10262, thioredoxin reductase; Provisional.	0
CP035477.1\|QAY48351.1\|923726_925385_+\|DNA-replication-and-repair-protein-RecF	gnl\|CDD\|226121	COG3593, COG3593, Predicted ATP-dependent endonuclease of the OLD family [DNA replication, recombination, and repair].	0
CP035477.1\|QAY48355.1\|929619_929844_-\|Cold-shock-like-protein-CspD	gnl\|CDD\|77494	PRK09937, PRK09937, cold shock-like protein CspD.	1.48016e-47
CP035477.1\|QAY48353.1\|926506_927604_+\|Macrolide-export-protein-MacA	gnl\|CDD\|183211	PRK11578, PRK11578, macrolide transporter subunit MacA; Provisional.	0
CP035477.1\|QAY48360.1\|934727_936449_-\|Lipid-A-export-ATP-binding/permease-protein-MsbA	gnl\|CDD\|236865	PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP035477.1\|QAY48352.1\|925381_926374_-\|hypothetical-protein	gnl\|CDD\|225537	COG2990, VirK, Uncharacterized protein conserved in bacteria [Function unknown].	3.26125e-132
CP035477.1\|QAY48361.1\|936449_938216_-\|ATP-binding/permease-protein-CydD	gnl\|CDD\|236870	PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed.	0
CP035477.1\|QAY48366.1\|945363_946707_+\|Replication-associated-recombination-protein-A	gnl\|CDD\|237355	PRK13342, PRK13342, recombination factor protein RarA; Reviewed.	0
CP035477.1\|QAY48358.1\|933478_933697_-\|Translation-initiation-factor-IF-1	gnl\|CDD\|178954	PRK00276, infA, translation initiation factor IF-1; Validated.	8.41354e-49
CP035477.1\|QAY48363.1\|939847_940342_+\|Leucine-responsive-regulatory-protein	gnl\|CDD\|183009	PRK11169, PRK11169, leucine-responsive transcriptional regulator Lrp.	5.32926e-117
CP035477.1\|QAY48349.1\|921292_922192_-\|Lysine-exporter-LysO	gnl\|CDD\|225287	COG2431, COG2431, Predicted membrane protein [Function unknown].	3.40497e-117
CP035477.1\|QAY48367.1\|946797_948090_+\|Serine--tRNA-ligase	gnl\|CDD\|235461	PRK05431, PRK05431, seryl-tRNA synthetase; Provisional.	0
CP035477.1\|QAY48357.1\|930517_932794_+\|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA	gnl\|CDD\|236828	PRK11034, clpA, ATP-dependent Clp protease ATP-binding subunit; Provisional.	0
CP035477.1\|QAY48350.1\|922606_923302_-\|Aquaporin-Z	gnl\|CDD\|235453	PRK05420, PRK05420, aquaporin Z; Provisional.	7.82992e-144
CP035477.1\|QAY48359.1\|933981_934686_-\|Leucyl/phenylalanyl-tRNA--protein-transferase	gnl\|CDD\|234720	PRK00301, aat, leucyl/phenylalanyl-tRNA--protein transferase; Reviewed.	1.92039e-139
CP035477.1\|QAY48356.1\|930166_930487_+\|ATP-dependent-Clp-protease-adapter-protein-ClpS	gnl\|CDD\|178809	PRK00033, clpS, ATP-dependent Clp protease adaptor protein ClpS; Reviewed.	2.48686e-49

>CP035477.1|QAY48357.1|930517_932794_+|ATP-dependent-Clp-protease-ATP-binding-subunit-ClpA
MLNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNPSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHGTRKDEPTQSSDPGSQPNSEEQAGGEERMENFTTNLNQLARVGGIDPLIGREKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGSLLAGTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSGKIRVIGSTTYQEFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLKPKYEAHHDVRYTAKAVRAAVELAVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARIARIPEKSVSQSDRDTLKNLGDRLKMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGAPPGYVGFDQGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQLDQKGVSLEVSQEARNWLAEKGYDRAMGARPMARVIQDNLKKPLANELLFGSLVDGGQVTVALDKEKNELTYGFQSAQKHKAEAAH
>CP035477.1|QAY48356.1|930166_930487_+|ATP-dependent-Clp-protease-adapter-protein-ClpS
MGKTNDWLDFDQLAEEKVRDALKPPSMYKVILVNDDYTPMEFVIDVLQKFFSYDVERATQLMLAVHYQGKAICGVFTAEVAETKVAMVNKYARENEHPLLCTLEKA
>CP035477.1|QAY48355.1|929619_929844_-|Cold-shock-like-protein-CspD
MEKGTVKWFNNAKGFGFICPEGGGEDIFAHYSTIQMDGYRTLKAGQSVQFDVHQGPKGNHASVIVPVEVEAAVA
>CP035477.1|QAY48354.1|927600_929547_+|Macrolide-export-ATP-binding/permease-protein-MacB
MTPLLELKDIRRSYPAGDEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKATSGTYRVAGQDVATLDADALAQLRREHFGFIFQRYHLLSHLTAEQNVEVPAVYAGLEWKQRLLRAQELLQRLGLEDRTEYYPAQLSGGQQQRVSIARALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAAQAERVIEIRDGEIVRNPPAIEKVNATGGTEPVVNTASGWRQFVSGFNEALTMAWRALAANKMRTLLTMLGIIIGIASVVSIVVVGDAAKQMVLADIRSIGTNTIDVYPGKDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGMTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNMPARVIGVAEEKQSMFGSSKVLRVWLPYSTMSGRVMGQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNMDGVLKTVEKTTRTLQLFLTLVAVISLVVGGIGVMNIMLVSVTERTREIGIRMAVGARASDVLQQFLIEAVLVCLVGGALGITLSLLIAFTLQLFLPGWEIGFSPLALLLAFLCSTVTGILFGWLPARNAARLDPVDALARE
>CP035477.1|QAY48353.1|926506_927604_+|Macrolide-export-protein-MacA
MKKRYVIAMVIVIAGLITLWRILNAPVPTYQTLIVRPGDLQQSVLATGKLDALRKVDVGAQVSGQLKTLSVAIGDKVKKDQLLGVIDPEQAENQIKEVEATLMELRAQRQQAEAELKLARVTYSRQQRLAQTQAVSQQDLDNAATEMAVKQAQIGTIDAQIKRNQASLDTAKTNLDYTRIVAPMAGEVTQITTLQGQTVIAAQQAPNILTLADMSTMLVKAQVSEADVIHLKPGQKAWFTVLGDPLTRYEGQIKDVLPTPEKINDAIFYYARFEVPNPNGLLRLDMTAQVHIQLTDVKNVLTIPLSALGDPVGDNRYKVKLLRNGETREREVTIGARNDTDVEIVKGLEAGDEVVIGEAKPGAAQ
>CP035477.1|QAY48352.1|925381_926374_-|hypothetical-protein
MVKSTSCITIDFMNMSQLTERTFTPSESLSSLSLFLSLARGQCRPGKFWHRRSFRQKFLLRSLIMPRLSVEWMNELSHWPNLNVLLTRQPRLPVRLHRPYLAANLSRKQLLEALRYHYALLRGCMSAEEFSLYLNTPGLQLAKLEGKNGEQFTLELTMMISMDKEGDSTILFRNSEGIPLAELTFTLCEYQGKRTMFIGGLQGAKWEIPHQEIQNATKACHGLFPKRLVMEAACLFAQRLQVEQIIAVSNETHIYRSLRYRDKEGKIHADYNAFWESVGGVCDAERHYRLPAQIARKEIAEIASKKRAEYRRRYEMLDAIQPQMATMFCS
>CP035477.1|QAY48351.1|923726_925385_+|DNA-replication-and-repair-protein-RecF
MILERVEIVGFRGINRLSLMLEQNNVLIGENAWGKSSLLDALTLLLSPESDLYHFERDDFWFPPGDINGREHHLHIILTFRESLPGRHRVRRYRPLEACWTPCTDGYHRIFYRLEGESAEDGSVMTLRSFLDKDGHPIDVEDINDQARHLVRLMPVLRLRDARFMRRIRNGTVPNVPNVEVTARQLDFLARELSSHPQNLSDGQIRQGLSAMVQLLEHYFSEQGAGQARYRLMRRRASNEQRSWRYLDIINRMIDRPGGRSYRVILLGLFATLLQAKGTLRLDKDARPLLLIEDPETRLHPIMLSVAWHLLNLLPLQRIATTNSGELLSLTPVEHVCRLVRESSRVAAWRLGPSGLSTEDSRRISFHIRFNRPSSLFARCWLLVEGETETWVINELARQCGHHFDAEGIKVIEFAQSGLKPLVKFARRMGIEWHVLVDGDEAGKKYAATVRSLLNNDREAEREHLTALPALDMEHFMYRQGFSDVFHRVAQIPENIPMNLRKIISKAIHRSSKPDLAIEVAMEAGRRGVDSVPTLLKKMFSRVLWLARGRAD
>CP035477.1|QAY48350.1|922606_923302_-|Aquaporin-Z
MFRKLAAECFGTFWLVFGGCGSAVLAAGFPELGIGFAGVALAFGLTVLTMAFAVGHISGGHFNPAVTIGLWAGGRFPAKEVVGYVIAQVVGGIVAAALLYLIASGKTGFDAAASGFASNGYGEHSPGGYSMLSALVVELVLSAGFLLVIHGATDKFAPAGFAPIAIGLALTLIHLISIPVTNTSVNPARSTAVAIFQGGWALEQLWFFWVVPIVGGIIGGLIYRTLLEKRN
>CP035477.1|QAY48349.1|921292_922192_-|Lysine-exporter-LysO
MFSGLLIILVPLIVGYLIPLRQKAALRVINQLLSWMVYLILFFMGISLAFLDNLASNLLAILHYSAVSTTVILLCNIAALMWLERGLPWSNHHQQEKLPSRIAMALESLKLCGVVVIGFAIGLSGLAFLQHATEASEYTLILLLFLVGIQLRNNGMTLKQIVLNRRGMIVAVVVVASSLIGGLINAFILDLPINTALAMASGFGWYSLSGILLTESFGPVIGSAAFFNDLARELIAIMLIPGLIRRSRSTALGLCGATSMDFTLPVLQRTGGLDMVPAAIVHGFILSLLVPILIAFFSA
>CP035477.1|QAY48348.1|919496_921149_-|Hydroxylamine-reductase
MFCVQCEQTIRTPAGNGCSYAQGMCGKTAETSDLQDLLIATLQGLSAWAVKAREYGIINHDVDSFAPRAFFSTLTNVNFDSPRIIGYAREAIALREALKAQCLAVDANARVDNPMADLQLVSDDLGELQRQAAEFTPNKDKAAIGENILGLRLLCLYGLKGAAAYMEHAHVLGQYDNDIYAQYHKIMAWLGTWPADMNALLECSMEIGQMNFKVMSILDAGETGKYGHPTPTQVNVKATAGKCILISGHDLKDLYNLLEQTEGTGVNVYTHGEMLPAHGYPELRKFKHLVGNYGSGWQNQQVEFARFPGPIVMTSNCIIDPTVGAYDDRIWTRSIVGWPGVRHLDGEDFSAVIAQAQQMAGFPYSEIPHLITVGFGRQTLLGAADTLIDLVSREKLRHIFLLGGCDGARGERHYFTDFATSVPDDCLILTLACGKYRFNKLEFGDIEGLPRLVDAGQCNDAYSAIILAVTLAEKLGCGVNDLPLSLVLSWFEQKAIVILLTLLSLGVKNIVTGPTAPGFLTPDLLAVLNEKFGLRSITTVEEDMKQLLSA
>CP035477.1|QAY48358.1|933478_933697_-|Translation-initiation-factor-IF-1
MAKEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR
>CP035477.1|QAY48359.1|933981_934686_-|Leucyl/phenylalanyl-tRNA--protein-transferase
MRLVQLSRHSIAFPSPEGALREPNGLLALGGDLSPARLLMAYQRGIFPWFSPGDPILWWSPDPRAVLWPESLHISRSMKRFHKRSPYRVTMNYAFGQVIEGCASDREEGTWITRGVVEAYHRLHELGHAHSIEVWREDELVGGMYGVAQGTLFCGESMFSRMENASKTALLVFCDEFIRHGGKLIDCQVLNDHTASLGACEIPRRDYLNYLNQMRLGRLSNNFWVPRCLFSPQE
>CP035477.1|QAY48360.1|934727_936449_-|Lipid-A-export-ATP-binding/permease-protein-MsbA
MRALLPYLALYKRHKWMLSLGIVLAIVTLLASIGLLTLSGWFLSASAVAGVAGLYSFNYMLPAAGVRGAAITRTAGRYFERLVSHDATFRVLQHLRIYTFSKLLPLSPAGLARYRQGELLNRVVADVDTLDHLYLRVISPLVGAFVVIMVVTIGLSFLDFTLAFTLGGIMLLTLFLMPPLFYRAGKSTGQNLTHLRGQYRQQLTAWLQGQAELTIFGASDRYRTQLENTEIQWLEAQRRQSELTALSQAIMLLIGALAVILMLWMASGGVGGNAQPGALIALFVFCALAAFEALAPVTGAFQHLGQVIASAVRITDLTDQKPKVTFPDTQTRVADRVSLTLRDVQFTYPEQSQQALKGIYLQVNAGEHIAILGRTGCGKSTLLQLLTRAWDPQQGEILLNDSPIASLNEAALRQTISVVPQRVHLFSATLRDNLLLASPGSSDEALAEILRRVGLEKLLEDAGLNSWLGEGGRQLSGGELRRLAIARALLHDAPLVLLDEPTEGLDATTESQILELLAEMMCEKTVLMVTHRLRGLSRFQQIIVMDNGQIIEQGTHAELLARQGRYYQFKQGL
>CP035477.1|QAY48361.1|936449_938216_-|ATP-binding/permease-protein-CydD
MNKSRQKELTRWLKQQSVISQRWLNISRLLGFVSGILIIAQAWFMARILQHMIMENIPREALLLPFTLLFLTFVLRAWVVWLRERVGYHAGQHIRFAIRRQVLDRLQQAGPAWIQGKPAGSWATLVLEQIDDMHDYYARYLPQMALAVSVPLLIVVAIFPSNWAAALILLGTAPLIPLFMALVGMGAADANRRNFLALARLSGHFLDRLRGMETLRIFGRGEAEIESIRSASEDFRQRTMEVLRLAFLSSGILEFFTSLSIALVAVYFGFSYLGELDFGHYDTGVTLAAGFLALILAPEFFQPLRDLGTFYHAKAQAVGAADSLKTFMETPLAHPQRGEAELASTDPVTIEAEDLFITSPEGKTLAGPLNFTLPAGQRAVLVGRSGSGKSSLLNALSGFLSYQGSLRINGIELRDLSPESWRKHLSWVGQNPQLPAATLRDNVLLARPDASEQELQTALDNAWVSEFLPLLPQGVDTPVGDQAARLSVGQAQRVAVARALLNPCSLLLLDEPAASLDAHSEQRVMEALNAASLRQTTLMVTHQLEDLADWDVIWVMQDGQIIEQGRYAELSVAGGPFATLLAHRQEEI
>CP035477.1|QAY48362.1|938338_939409_-|Thioredoxin-reductase
MLPIAQIVNKIVILFFYVCKFPTILPLSANNYGDLMGTTKHSKLLILGSGPAGYTAAVYAARANLQPVLITGMEKGGQLTTTTEVENWPGDPNDLTGPLLMERMHEHATKFETEIIFDHINKVDLQNRPFRLTGDSGEYTCDALIIATGASARYLGLPSEEAFKGRGVSACATCDGFFYRNQKVAVIGGGNTAVEEALYLSNIASEVHLIHRRDGFRAEKILIKRLMDKVENGNIILHTNRTLEEVTGDQMGVTGVRLRDTQNTDNIESLDVAGLFVAIGHSPNTAIFEGQLELENGYIKVQSGIHGNATQTSIPGVFAAGDVMDHIYRQAITSAGTGCMAALDAERYLDGLADAK
>CP035477.1|QAY48363.1|939847_940342_+|Leucine-responsive-regulatory-protein
MVDSKKRPGKDLDRIDRNILNELQKDGRISNVELSKRVGLSPTPCLERVRRLERQGFIQGYTALLNPHYLDASLLVFVEITLNRGAPDVFEQFNTAVQKLEEIQECHLVSGDFDYLLKTRVPDMSAYRKLLGETLLRLPGVNDTRTYVVMEEVKQSNRLVIKTR
>CP035477.1|QAY48364.1|940476_944583_+|DNA-translocase-FtsK
MSQEYTEDKEVTLTKLSSGRRLLEALLILIVLFAVWLMAALLSFNPSDPSWSQTAWHEPIHNLGGMPGAWLADTLFFIFGVMAYTIPVIIVGGCWFAWRHQSSDEYIDYFAVSLRIIGVLALILTSCGLAAINADDIWYFASGGVIGSLLSTTLQPLLHSSGGTIALLCVWAAGLTLFTGWSWVTIAEKLGGWILNILTFASNRTRRDDTWVDEDEYEDDEEYEDENHGKQHESRRARILRGALARRKRLAEKFINPMGRQTDAALFSGKRMDDDEEITYTARGVAADPDDVLFSGNRATQPEYDEYDPLLNGAPITEPVAVAAAATTATQSWAAPVEPVTQTPPVASVDVPPAQSTVAWQPVPGPQTGEPVIAPAPEGYPQQPQYAQPAVQYNEPLQQPVQPQQPYYAPAAEQPAQQPYYAPAAEQPVQQPYYATAAEQPAQQPYYAPAPEQAVAGNAWQAEEQQSTFAPQSTYQTEQTYQQPAAQEPLYQQPQPVEQQPVVEPEPVVEETKPTRPPLYYFEEVEEKRAREREQLAAWYQPIPEPVKEPEPIKSSLKAPSVAAVPPVEAAAAVSPLASGVKKATLATGAAATVAAPVFSLANSGGPRPQVKEGIGPQLPRPKRIRVPTRRELASYGIKLPSQRAAEEKAREAQRNQYDSGDQYNDDEIDAMQQDELARQFAQTQQQRYGEQYQHDVPVNTEDADAAAEAELARQFAQTQQQRYSGEQPAGANPFSLDDFEFSPMKALLDDGPHEPLFTPIVEPVQQPQQPVAPQQQYQQPQQPVAPQPQYQQPQQPVAPQQQYQQPQQPVAQQPQYQQPQQPVTQQPQYQQPQQPVVPQPQYQQPQQPVAPQPQDTLLHPLLMRNGDSRPLHKPTTPLPSLDLLTPPPSEVEPVDTFALEQMARLVEARLADFRIKADVVNYSPGPVITRFELNLAPGVKAARISNLSRDLARSLSTVAVRVVEVIPGKPYVGLELPNKKRQTVYLREVLDNAKFRDNPSPLTVVLGKDIAGEPVVADLAKMPHLLVAGTTGSGKSVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSVYEGIPHLLTEVVTDMKDAANALRWCVNEMERRYKLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEPYIVVLVDEFADLMMTVGKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRTILDQAGAESLLGMGDMLYSGPNSTLPVRVHGAFVRDQEVHAVVQDWKARGRPQYVDGITSDSESEGGAGGFDGAEELDPLFDQAVQFVTEKRKASISGVQRQFRIGYNRAARIIEQMEAQGIVSEQGHNGNREVLAPPPFD
>CP035477.1|QAY48365.1|944741_945353_+|Outer-membrane-lipoprotein-carrier-protein
MKKIAITCALLSSLVASSVWADAASDLKSRLDKVSSFHASFTQKVTDGSGAAVQEGQGDLWVKRPNLFNWHMTQPDESILVSDGKTLWFYNPFVEQATATWLKDATGNTPFMLIARNQSSDWQQYNIKQNGDDFVLTPKASNGNLKQFTINVGRDGTIHQFSAVEQDDQRSSYQLKSQQNGAVDAAKFTFTPPQGVTVDDQRK
>CP035477.1|QAY48366.1|945363_946707_+|Replication-associated-recombination-protein-A
MSNLSLDFSDNTFQPLAARMRPENLAQYIGQQHLLAVGKPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERISAVTSGVKEIREAIERARQNRNAGRRTILFVDEVHRFNKSQQDAFLPHIEDGTITFIGATTENPSFELNSALLSRARVYLLKSLSTEDIEQVLTQAMEDKTRGYGGQDIVLPDETRRAIAELVNGDARRALNTLEMMADMAEVDDSGKRVLKPELLTEIAGERSARFDNKGDRFYDLISALHKSVRGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVGPAEGERAIAQAIVYLACAPKSNAVYTAFKAALADARERPDYDVPVHLRNAPTKLMKEMGYGQEYRYAHDEANAYAAGEVYFPPEIAQTRYYFPTNRGLEGKIGEKLAWLAEQDQNSPIKRYR
>CP035477.1|QAY48367.1|946797_948090_+|Serine--tRNA-ligase
MLDPNLLRNEPDAVAEKLARRGFKLDVDKLGALEERRKVLQVKTENLQAERNSRSKSIGQAKARGEDIEPLRLEVNKLGEELDAAKAELDALQAEIRDIALTIPNLPADEVPVGKDENDNVEVSRWGTPREFDFEVRDHVTLGEMHSGLDFAAAVKLTGSRFVVMKGQIARMHRALSQFMLDLHTEQHGYSENYVPYLVNQDTLYGTGQLPKFAGDLFHTRPLEEEADTSNYALIPTAEVPLTNLVRGEIIDEDDLPIKMTAHTPCFRSEAGSYGRDTRGLIRMHQFDKVEMVQIVRPEDSMAALEEMTGHAEKVLQLLGLPYRKIILCTGDMGFGACKTYDLEVWIPAQNTYREISSCSNVWDFQARRMQARCRSKSDKKTRLVHTLNGSGLAVGRTLVAVMENYQQADGRIEVPEVLRPYMNGLEYIG

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_AP023208	Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence	12111-12158	8	0.833
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	LR134125	Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5	424237-424284	8	0.833
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP044147	Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2	7391-7438	10	0.792
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	CP044351	Escherichia coli strain 194195 plasmid p194195_1, complete sequence	84215-84262	10	0.792
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	87125-87172	10	0.792
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229237-229284	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229338-229385	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	229439-229486	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239731-239778	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239832-239879	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	239933-239980	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP044307	Escherichia coli strain C27A plasmid pC27A-2, complete sequence	15006-15053	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230643-230690	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230744-230791	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	230845-230892	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211613-211660	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211714-211761	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	211815-211862	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_AP023207	Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence	31250-31297	11	0.771
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	3371-3418	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4012-4059	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	4113-4160	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053606	Escherichia coli strain NEB_Turbo plasmid F', complete sequence	208980-209027	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	3370-3417	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4011-4058	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	4112-4159	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP053608	Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence	219474-219521	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	3370-3417	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4011-4058	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	4112-4159	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014271	Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence	210308-210355	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	3370-3417	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4011-4058	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	4112-4159	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_CP014273	Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence	191263-191310	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	MT230402	Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence	270-317	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	NZ_AP023206	Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence	101195-101242	12	0.75
CP035477_1	1.1\|766846\|48\|CP035477\|CRISPRCasFinder	766846-766893	48	MT230312	Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence	158-205	13	0.729

1. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_AP023208 (Escherichia coli strain TUM18781 plasmid pMTY18781-3, complete sequence) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gactcgtaggcctgataagacgcgccagcgtcgcatcaggcaccgaac	Protospacer
.* .********************* ****************   *.*

2. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to LR134125 (Klebsiella aerogenes strain NCTC10006 genome assembly, plasmid: 5) position: , mismatch: 8, identity: 0.833

aaaccgtaggcctgataagacgcgcaagcgtcg-catcaggcaaacagc	CRISPR spacer
aacctgtaggcctgataagacgcgcaagcgtcgccatcaggcatctca-	Protospacer
** *.**************************** *********  . .

3. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP044147 (Escherichia coli O157 strain AR-0428 plasmid pAR-0428-2) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

4. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to CP044351 (Escherichia coli strain 194195 plasmid p194195_1, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gttttgtaggcatgataagacgcgccagcgtcgcatcaggcatccggc	Protospacer
.  ..****** ************* ****************  *.**

5. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 10, identity: 0.792

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
attttgtaggcctgataagacgcggcagcgtcgcatcaggcatcgtgc	Protospacer
*  ..*******************  ****************    **

6. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

7. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

8. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

9. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

10. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

11. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

12. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP044307 (Escherichia coli strain C27A plasmid pC27A-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctggt	Protospacer
.. .******* ************* ****************  ..*.

13. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

14. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

15. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

16. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

17. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgcg	Protospacer
** ..*******************. ****************  ..

18. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
aatttgtaggcctgataagacgcgttagcgtcgcatcaggcatctgca	Protospacer
** ..*******************. ****************  ..

19. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_AP023207 (Escherichia coli strain TUM18781 plasmid pMTY18781-2, complete sequence) position: , mismatch: 11, identity: 0.771

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
cggctgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
 ..*.*******************  ****************   * .

20. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

21. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

22. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

23. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053606 (Escherichia coli strain NEB_Turbo plasmid F', complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

24. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

25. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

26. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

27. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP053608 (Escherichia coli strain NEB5-alpha_F'Iq plasmid F'Iq, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

28. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

29. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

30. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

31. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014271 (Escherichia coli K-12 strain K-12 DHB4 plasmid F128-(DHB4), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

32. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggctcgtaggcatgataagacgcgccagcgtcgcatcaggcacctgcg	Protospacer
.. .******* ************* ****************  ..

33. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgctagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

34. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtttgtaggcatgataagacgcgccagcgtcgcatcaggcatctgcg	Protospacer
*. ..****** ************* ****************  ..

35. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_CP014273 (Escherichia coli K-12 strain K-12 C3026 plasmid F128-(C3026), complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
agtgggtaggcctgataagacgcgtcagcgtcgcatcaggcatctgag	Protospacer
*.   *******************. ****************  ...

36. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to MT230402 (Escherichia coli strain DH5alpha plasmid pESBL87, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
ggtttgtaggcctgataagacgcgacagcgtcgcatcaggcattgatt	Protospacer
.. ..*******************  ****************   * .

37. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to NZ_AP023206 (Escherichia coli strain TUM18781 plasmid pMTY18781-1_lncX3, complete sequence) position: , mismatch: 12, identity: 0.75

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
taatacaaggcctgataagacgcgccagcgtcgcatcaggcgctgaat	Protospacer
 **.   ****************** ***************.   *..

38. spacer 1.1|766846|48|CP035477|CRISPRCasFinder matches to MT230312 (Escherichia coli strain DH5alpha plasmid pESBL31, complete sequence) position: , mismatch: 13, identity: 0.729

aaaccgtaggcctgataagacgcgcaagcgtcgcatcaggcaaacagc	CRISPR spacer
gtctngtaggcctgataagacgcgtcagcgtcgcatcaggcttcaatt	Protospacer
.  . *******************. ***************    * .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

940476 : 989551

Enterobacteria_phage(76.47%)

tail,protease,tRNA

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY48364.1\|940476_944583_+	DNA translocase FtsK	A0A218M9A2	Mycobacterium_phage	1.2e-86	48.7
QAY48365.1\|944741_945353_+	Outer-membrane lipoprotein carrier protein	NA	NA	NA	NA
QAY48366.1\|945363_946707_+	Replication-associated recombination protein A	G3MBE0	Bacillus_virus	2.1e-80	40.8
QAY48367.1\|946797_948090_+\|tRNA	Serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	1.5e-94	48.2
QAY48368.1\|948395_948536_-	hypothetical protein	A0A0A7NPZ4	Enterobacteria_phage	7.0e-19	100.0
QAY48369.1\|948727_948988_-	hypothetical protein	NA	NA	NA	NA
QAY48370.1\|949030_950140_-	hypothetical protein	A0A0A7NQ97	Enterobacteria_phage	2.8e-195	94.6
QAY48371.1\|950297_951482_+\|tail	Putative prophage major tail sheath protein	A0A0A7NV69	Enterobacteria_phage	5.4e-221	97.2
QAY48372.1\|951481_951994_+	hypothetical protein	A0A0A7NPV8	Enterobacteria_phage	1.5e-90	97.1
QAY48373.1\|952049_952424_+	hypothetical protein	A0A0A7NPZ0	Enterobacteria_phage	5.8e-36	71.5
QAY48374.1\|952574_955382_+	hypothetical protein	A0A0A7NRZ9	Enterobacteria_phage	0.0e+00	90.4
QAY48375.1\|955394_955883_+	hypothetical protein	A0A0A7NV65	Enterobacteria_phage	1.4e-85	99.4
QAY48376.1\|955909_956509_-	DNA-invertase hin	A0A0A7NPV4	Enterobacteria_phage	2.0e-86	86.3
QAY48377.1\|957048_957663_-\|tail	Prophage tail fiber assembly protein TfaE	Q9MCR5	Enterobacteria_phage	3.5e-62	62.1
QAY48378.1\|957662_957872_-	hypothetical protein	NA	NA	NA	NA
QAY48379.1\|957877_959485_-	hypothetical protein	M1TAS6	Escherichia_phage	1.8e-94	43.7
QAY48380.1\|959481_960090_-	hypothetical protein	A0A0F7LA36	Escherichia_phage	1.0e-85	74.4
QAY48381.1\|960082_960979_-	hypothetical protein	A0A0A7NPY5	Enterobacteria_phage	5.1e-155	98.0
QAY48382.1\|960982_961333_-	hypothetical protein	A0A0A7NQ90	Enterobacteria_phage	6.0e-59	99.1
QAY48383.1\|961329_961911_-	hypothetical protein	A0A0A7NRZ3	Enterobacteria_phage	2.5e-102	98.4
QAY48384.1\|961907_962552_-	hypothetical protein	A0A0A7NV60	Enterobacteria_phage	1.1e-114	100.0
QAY48385.1\|962535_963003_-	hypothetical protein	A0A0A7NPU6	Enterobacteria_phage	2.7e-83	95.5
QAY48386.1\|963026_964904_-	putative 9-O-acetyl-N-acetylneuraminic acid deacetylase	H6WZJ9	Escherichia_phage	3.0e-306	82.2
QAY48387.1\|965042_965438_-	hypothetical protein	A0A0A7NPY2	Enterobacteria_phage	1.0e-59	93.3
QAY48388.1\|965434_965827_-	hypothetical protein	A0A0A7NQ86	Enterobacteria_phage	1.9e-69	96.9
QAY48389.1\|965823_966147_-	hypothetical protein	A0A0A7NRY9	Enterobacteria_phage	1.7e-47	93.5
QAY48390.1\|966149_966350_-	hypothetical protein	A0A0A7NV57	Enterobacteria_phage	3.5e-32	100.0
QAY48391.1\|966349_966844_-	hypothetical protein	A0A0A7NPU2	Enterobacteria_phage	5.1e-88	97.6
QAY48392.1\|966945_967746_-	hypothetical protein	A0A0A7NPX9	Enterobacteria_phage	3.3e-137	96.6
QAY48393.1\|967791_968844_-	hypothetical protein	A0A0A7NQ82	Enterobacteria_phage	7.5e-190	94.6
QAY48394.1\|968867_969704_-	hypothetical protein	A0A0A7NRY7	Enterobacteria_phage	1.5e-148	98.9
QAY48395.1\|969858_971610_+	hypothetical protein	A0A0A7NV54	Enterobacteria_phage	0.0e+00	98.3
QAY48396.1\|971609_972656_+	hypothetical protein	A0A0A7NPT9	Enterobacteria_phage	2.2e-202	99.7
QAY48397.1\|972670_973195_-	hypothetical protein	NA	NA	NA	NA
QAY48398.1\|973781_974045_-	hypothetical protein	A0A2P0P958	Salmonella_phage	6.7e-31	73.6
QAY48399.1\|974046_974487_-	hypothetical protein	A0A2I6PID2	Escherichia_phage	1.5e-19	50.3
QAY48400.1\|974488_974803_-	hypothetical protein	A0A0A7NRY2	Enterobacteria_phage	5.5e-48	94.2
QAY48401.1\|974799_975132_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpX	A0A0A7NV51	Enterobacteria_phage	5.5e-54	96.4
QAY48402.1\|975195_975507_-	hypothetical protein	A0A0A7NPT5	Enterobacteria_phage	4.2e-48	95.1
QAY48403.1\|975511_976471_-	Plasmid segregation protein ParM	A0A0A7NPX4	Enterobacteria_phage	9.9e-181	99.7
QAY48404.1\|976547_979370_-	hypothetical protein	A0A0A7NQ77	Enterobacteria_phage	0.0e+00	97.1
QAY48405.1\|979376_979742_-	hypothetical protein	A0A0A7NRY1	Enterobacteria_phage	1.9e-60	96.7
QAY48406.1\|979738_980359_-	hypothetical protein	S5MQL6	Escherichia_phage	3.5e-09	39.0
QAY48407.1\|980412_981243_-	hypothetical protein	A0A0A7NPW9	Enterobacteria_phage	7.4e-132	99.3
QAY48408.1\|981239_981443_-	hypothetical protein	A0A0A7NQ74	Enterobacteria_phage	2.4e-28	97.0
QAY48409.1\|981439_981658_-	hypothetical protein	A0A0A7NRX6	Enterobacteria_phage	5.2e-13	63.8
QAY48410.1\|981654_981858_-	hypothetical protein	A0A0A7NPS8	Enterobacteria_phage	5.5e-25	82.1
QAY48411.1\|981881_982292_-	hypothetical protein	NA	NA	NA	NA
QAY48412.1\|982360_982498_-	hypothetical protein	A0A0A7NPW7	Enterobacteria_phage	1.9e-08	100.0
QAY48413.1\|982494_982737_-	hypothetical protein	A0A0A7NQ71	Enterobacteria_phage	2.3e-38	100.0
QAY48414.1\|982748_983027_-	hypothetical protein	A0A0A7NRX5	Enterobacteria_phage	3.1e-34	79.3
QAY48415.1\|983037_983388_-	hypothetical protein	A0A0A7NV42	Enterobacteria_phage	2.8e-56	94.0
QAY48416.1\|983525_983717_+	hypothetical protein	NA	NA	NA	NA
QAY48417.1\|983723_984146_-	hypothetical protein	NA	NA	NA	NA
QAY48418.1\|984150_984672_-	hypothetical protein	NA	NA	NA	NA
QAY48419.1\|984775_985117_+	hypothetical protein	Q1JS21	Enterobacteria_phage	2.5e-17	47.1
QAY48420.1\|985186_986179_+	Tyrosine recombinase XerD	A0A0F7LBR0	Escherichia_phage	2.0e-104	56.5
QAY48421.1\|986478_988923_+	Dimethyl sulfoxide reductase DmsA	A0A077SK27	Escherichia_phage	6.6e-221	49.8
QAY48422.1\|988933_989551_+	Anaerobic dimethyl sulfoxide reductase chain B	A0A077SL61	Escherichia_phage	5.0e-77	60.6

DBSCAN-SWA_2

999949 : 1039451

Burkholderia_virus(45.0%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY48431.1\|999949_1001038_+	Phosphoserine aminotransferase	M1Q1P2	Streptococcus_phage	2.7e-81	46.8
QAY48432.1\|1001108_1002392_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
QAY48433.1\|1002647_1003220_-	DNA-invertase hin	A0A0A7NPV4	Enterobacteria_phage	4.6e-85	85.2
QAY48434.1\|1003291_1003753_+	hypothetical protein	A0A0F7LCR3	Escherichia_phage	3.9e-34	50.0
QAY48435.1\|1003759_1004374_-\|tail	Prophage tail fiber assembly protein TfaE	Q9MCR5	Enterobacteria_phage	2.5e-60	60.5
QAY48436.1\|1004373_1004856_-	hypothetical protein	K7P7Q7	Enterobacteria_phage	7.5e-28	44.7
QAY48437.1\|1004896_1006144_-	hypothetical protein	A0A0K2FIZ6	Escherichia_phage	2.0e-40	43.7
QAY48438.1\|1006146_1006725_-	hypothetical protein	A4JWL7	Burkholderia_virus	1.7e-66	66.8
QAY48439.1\|1006717_1007821_-	hypothetical protein	Q6QI99	Burkholderia_phage	1.4e-106	55.2
QAY48440.1\|1007811_1008159_-	hypothetical protein	Q6QIA0	Burkholderia_phage	5.9e-35	62.4
QAY48441.1\|1008213_1008810_-	hypothetical protein	A4JWL4	Burkholderia_virus	3.2e-36	45.2
QAY48442.1\|1008806_1009961_-	hypothetical protein	Q6QIA2	Burkholderia_phage	1.9e-85	47.6
QAY48443.1\|1009948_1010161_-	hypothetical protein	Q6QIA3	Burkholderia_phage	1.2e-17	57.1
QAY48444.1\|1010160_1011045_-	hypothetical protein	A4JWL1	Burkholderia_virus	6.8e-51	47.9
QAY48445.1\|1011044_1013996_-	hypothetical protein	A4JWL0	Burkholderia_virus	9.8e-86	29.9
QAY48446.1\|1014153_1014489_-	hypothetical protein	NA	NA	NA	NA
QAY48447.1\|1014586_1014868_-	hypothetical protein	NA	NA	NA	NA
QAY48448.1\|1014870_1015392_-	hypothetical protein	A4JWK6	Burkholderia_virus	1.8e-67	67.6
QAY48449.1\|1015391_1016819_-\|tail	Putative prophage major tail sheath protein	A4JWK5	Burkholderia_virus	4.5e-214	76.3
QAY48450.1\|1016808_1017060_-	hypothetical protein	NA	NA	NA	NA
QAY48451.1\|1017059_1017524_-	hypothetical protein	Q6QIB2	Burkholderia_phage	9.1e-39	51.7
QAY48452.1\|1017523_1017970_-	hypothetical protein	A4JWK2	Burkholderia_virus	2.2e-34	52.3
QAY48453.1\|1017971_1018310_-	hypothetical protein	NA	NA	NA	NA
QAY48454.1\|1018319_1019273_-	hypothetical protein	A4JWK0	Burkholderia_virus	3.4e-64	43.8
QAY48455.1\|1019287_1020403_-	hypothetical protein	A4JWJ9	Burkholderia_virus	9.4e-98	51.6
QAY48456.1\|1020617_1021076_-	hypothetical protein	Q6QIB8	Burkholderia_phage	2.6e-30	44.8
QAY48457.1\|1021078_1021900_-	hypothetical protein	A4JWJ6	Burkholderia_virus	1.8e-98	61.9
QAY48458.1\|1021880_1023377_-	hypothetical protein	A4JWJ5	Burkholderia_virus	9.7e-167	59.0
QAY48459.1\|1023376_1024972_-	hypothetical protein	A4JWJ4	Burkholderia_virus	6.5e-185	62.8
QAY48460.1\|1024968_1025514_-	hypothetical protein	A4JWJ3	Burkholderia_virus	9.3e-59	67.6
QAY48461.1\|1025513_1025825_-	hypothetical protein	A0A0S4L0A3	Pseudomonas_phage	9.4e-32	62.6
QAY48462.1\|1025824_1026151_-	hypothetical protein	Q6QIC4	Burkholderia_phage	1.1e-17	48.6
QAY48463.1\|1026147_1026798_-	hypothetical protein	J9SVN7	Pseudomonas_phage	2.8e-09	32.9
QAY48464.1\|1026781_1027489_-	Membrane-bound lytic murein transglycosylase F	Q5ZQZ1	Pseudomonas_phage	3.1e-62	58.2
QAY48465.1\|1027524_1027875_-	hypothetical protein	A4JWP3	Burkholderia_virus	1.5e-22	53.0
QAY48466.1\|1028005_1028734_+	hypothetical protein	NA	NA	NA	NA
QAY48467.1\|1028709_1029111_-	hypothetical protein	NA	NA	NA	NA
QAY48468.1\|1029112_1029328_+	hypothetical protein	NA	NA	NA	NA
QAY48469.1\|1029518_1030283_+	Modification methylase DpnIIA	A2I2Y7	Vibrio_virus	5.2e-100	64.4
QAY48470.1\|1030399_1030756_-	HTH-type transcriptional regulator ImmR	NA	NA	NA	NA
QAY48471.1\|1030849_1031038_+	hypothetical protein	Q5ZQZ9	Pseudomonas_phage	3.9e-17	71.0
QAY48472.1\|1031090_1031399_+	hypothetical protein	Q5ZR02	Pseudomonas_phage	2.7e-23	55.9
QAY48473.1\|1031409_1032330_+	hypothetical protein	A4JWN3	Burkholderia_virus	1.6e-74	56.2
QAY48474.1\|1032329_1032647_+	hypothetical protein	NA	NA	NA	NA
QAY48475.1\|1032662_1034432_+	hypothetical protein	A4JWN2	Burkholderia_virus	1.5e-227	69.4
QAY48476.1\|1034442_1035609_+	hypothetical protein	A4JWN1	Burkholderia_virus	2.2e-121	59.4
QAY48477.1\|1035611_1035881_+	hypothetical protein	NA	NA	NA	NA
QAY48478.1\|1035908_1036439_+	hypothetical protein	L7P7T1	Pseudomonas_phage	1.2e-58	66.7
QAY48479.1\|1036536_1036731_+	hypothetical protein	NA	NA	NA	NA
QAY48480.1\|1036727_1037000_+	hypothetical protein	NA	NA	NA	NA
QAY48481.1\|1037009_1037306_+	hypothetical protein	NA	NA	NA	NA
QAY48482.1\|1037320_1037536_+	hypothetical protein	NA	NA	NA	NA
QAY48483.1\|1037532_1038216_+	hypothetical protein	A0A2P9JZH4	Alteromonadaceae_phage	1.1e-32	36.1
QAY48484.1\|1038212_1038443_+	hypothetical protein	NA	NA	NA	NA
QAY48485.1\|1038432_1038639_+	hypothetical protein	NA	NA	NA	NA
QAY48486.1\|1038640_1039090_+	hypothetical protein	A4JWM5	Burkholderia_virus	6.1e-24	45.1
QAY48487.1\|1039061_1039451_+	hypothetical protein	Q6QIE8	Burkholderia_phage	1.5e-31	54.2

DBSCAN-SWA_3

1254009 : 1264375

Enterobacteria_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY48692.1\|1254009_1255260_+	Isocitrate dehydrogenase [NADP]	Q77Z09	Phage_21	3.8e-23	100.0
QAY48693.1\|1255373_1256516_-	hypothetical protein	Q77Z02	Phage_21	3.6e-206	100.0
QAY48694.1\|1256505_1256742_-	hypothetical protein	NA	NA	NA	NA
QAY48695.1\|1256881_1257121_-	hypothetical protein	M1FPC8	Enterobacteria_phage	4.7e-39	96.2
QAY48696.1\|1257104_1257431_-	hypothetical protein	A5VWB6	Enterobacteria_phage	9.8e-48	95.7
QAY48697.1\|1258206_1258389_-	hypothetical protein	A0A1U8QQC1	Enterobacteria_phage	1.8e-27	98.3
QAY48698.1\|1258385_1259066_-	hypothetical protein	A0A0P0ZCD4	Stx2-converting_phage	1.6e-132	100.0
QAY48699.1\|1259062_1259848_-	hypothetical protein	A0A1I9LJN0	Stx_converting_phage	6.3e-149	100.0
QAY48700.1\|1259853_1260150_-	hypothetical protein	A0A1I9LJN1	Stx_converting_phage	8.9e-48	98.0
QAY48701.1\|1260225_1260432_-	Killing protein KilR	K7P6H3	Enterobacteria_phage	3.2e-28	85.3
QAY48702.1\|1261027_1261783_-	HTH-type transcriptional regulator PrtR	Q76H56	Enterobacteria_phage	1.4e-92	75.0
QAY48703.1\|1261821_1262052_+	hypothetical protein	A0A2H4FNF3	Salmonella_phage	1.5e-21	68.0
QAY48704.1\|1262121_1262661_+	hypothetical protein	K7PJT7	Enterobacteria_phage	2.6e-61	67.0
QAY48705.1\|1262672_1263677_+	hypothetical protein	A0A0M5M7Y1	Salmonella_phage	8.7e-111	64.1
QAY48706.1\|1263673_1264375_+	hypothetical protein	M1FJ72	Enterobacteria_phage	1.5e-125	97.0

DBSCAN-SWA_4

1270416 : 1297261

Enterobacteria_phage(60.61%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY48708.1\|1270416_1270872_+	hypothetical protein	I6PD71	Cronobacter_phage	1.6e-59	66.9
QAY48709.1\|1270871_1271042_+	hypothetical protein	K7P7K0	Enterobacteria_phage	2.4e-13	69.8
QAY48710.1\|1271034_1271325_+	hypothetical protein	K7PGZ6	Enterobacteria_phage	2.3e-48	95.8
QAY48711.1\|1271321_1271684_+	Crossover junction endodeoxyribonuclease RusA	K7PM48	Enterobacteria_phage	1.6e-59	95.7
QAY48712.1\|1271683_1271821_+	hypothetical protein	K7PHH3	Enterobacteria_phage	1.4e-08	69.8
QAY48713.1\|1271817_1272507_+	hypothetical protein	I6PDF8	Cronobacter_phage	4.9e-57	48.5
QAY48714.1\|1272828_1273134_+	hypothetical protein	A0A286N2Q5	Klebsiella_phage	7.0e-40	87.6
QAY48715.1\|1273120_1273597_+	hypothetical protein	K7PKV2	Enterobacteria_phage	7.3e-84	94.9
QAY48716.1\|1273593_1274055_+	hypothetical protein	A0A0K2FJD0	Enterobacteria_phage	2.7e-75	97.4
QAY48717.1\|1274086_1274380_-	hypothetical protein	K7PL54	Enterobacteria_phage	7.0e-45	92.8
QAY48718.1\|1274860_1275187_+	hypothetical protein	H6WZK5	Escherichia_phage	3.7e-39	72.2
QAY48719.1\|1275309_1275663_-	hypothetical protein	NA	NA	NA	NA
QAY48720.1\|1276139_1276685_+	hypothetical protein	A0A0K2FIG2	Enterobacteria_phage	6.8e-94	98.3
QAY48721.1\|1276659_1278585_+	hypothetical protein	A0A0K2FJ14	Enterobacteria_phage	0.0e+00	99.1
QAY48722.1\|1278581_1278788_+	hypothetical protein	A0A2R9YJL2	Escherichia_phage	5.8e-30	100.0
QAY48723.1\|1278784_1280386_+	hypothetical protein	A0A0K2FJC0	Enterobacteria_phage	1.4e-309	98.9
QAY48724.1\|1280366_1281686_+	Putative signal peptide peptidase SppA	A0A2I6TC87	Escherichia_phage	1.1e-230	97.7
QAY48725.1\|1281695_1282028_+	hypothetical protein	A0A2R9YJN3	Escherichia_phage	3.8e-55	99.1
QAY48726.1\|1282083_1283109_+	hypothetical protein	C6ZCY2	Enterobacteria_phage	7.8e-192	99.4
QAY48727.1\|1283150_1283549_+	hypothetical protein	A0A0K2FIR1	Enterobacteria_phage	1.0e-62	98.5
QAY48728.1\|1283560_1283914_+	hypothetical protein	A0A2R9YJJ5	Escherichia_phage	2.2e-61	98.3
QAY48729.1\|1283925_1284504_+	hypothetical protein	A0A2R9YJK4	Escherichia_phage	5.9e-80	92.7
QAY48730.1\|1284500_1284896_+	hypothetical protein	A0A2R9YJI2	Escherichia_phage	2.9e-70	98.5
QAY48731.1\|1284903_1285644_+	hypothetical protein	A0A2I6TC77	Escherichia_phage	1.6e-130	98.0
QAY48732.1\|1285659_1286082_+	hypothetical protein	A0A0K2FIQ8	Enterobacteria_phage	2.2e-68	94.3
QAY48733.1\|1286063_1286498_+	hypothetical protein	A0A0K2FJB3	Enterobacteria_phage	6.9e-65	100.0
QAY48734.1\|1286490_1289052_+	hypothetical protein	A0A0K2FI43	Enterobacteria_phage	0.0e+00	98.4
QAY48735.1\|1289048_1289378_+	hypothetical protein	A0A0K2FIE9	Enterobacteria_phage	2.8e-58	99.1
QAY48736.1\|1289377_1290076_+	hypothetical protein	A0A0K2FJ01	Enterobacteria_phage	5.1e-134	99.6
QAY48737.1\|1290224_1290824_+	hypothetical protein	K7PLW1	Enterobacteria_phage	1.5e-118	97.5
QAY48738.1\|1290820_1291363_+	hypothetical protein	A0A291AWV5	Escherichia_phage	1.3e-76	84.1
QAY48739.1\|1291423_1294906_+	hypothetical protein	A0A291AWT4	Escherichia_phage	0.0e+00	90.3
QAY48740.1\|1294964_1296986_+	hypothetical protein	A0A0E3M0V5	Enterobacteria_phage	7.2e-181	72.3
QAY48741.1\|1296982_1297261_+	hypothetical protein	A0A0E3JSQ1	Enterobacteria_phage	9.9e-25	55.4

DBSCAN-SWA_5

1439183 : 1495352

Enterobacteria_phage(27.45%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY48891.1\|1439183_1441655_-	Exodeoxyribonuclease 8	A0A192Y6E0	Salmonella_phage	5.7e-55	56.0
QAY48892.1\|1441747_1441939_-	hypothetical protein	NA	NA	NA	NA
QAY48893.1\|1441935_1442124_-	hypothetical protein	NA	NA	NA	NA
QAY48894.1\|1442689_1442908_-	hypothetical protein	NA	NA	NA	NA
QAY48895.1\|1442937_1443066_-	hypothetical protein	NA	NA	NA	NA
QAY48896.1\|1443067_1443304_-	hypothetical protein	M4QQ57	Salicola_phage	1.4e-06	51.1
QAY48897.1\|1443495_1444212_-	putative HTH-type transcriptional regulator	H9C160	Pectobacterium_phage	1.7e-52	42.0
QAY48898.1\|1444261_1444477_+	hypothetical protein	NA	NA	NA	NA
QAY48899.1\|1444473_1444899_+	hypothetical protein	NA	NA	NA	NA
QAY48900.1\|1444996_1445884_+	hypothetical protein	S5FM81	Shigella_phage	7.3e-61	55.7
QAY48901.1\|1445890_1446637_+	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	4.0e-113	83.8
QAY48902.1\|1446658_1447429_+	hypothetical protein	A0A0U2SAW4	Escherichia_phage	1.6e-80	64.5
QAY48903.1\|1447444_1447870_+	hypothetical protein	A0A0U2QQN3	Escherichia_phage	2.2e-63	94.0
QAY48904.1\|1448044_1448710_+	hypothetical protein	NA	NA	NA	NA
QAY48905.1\|1448890_1449103_+	hypothetical protein	A0A0U2QV81	Escherichia_phage	5.2e-26	90.0
QAY48906.1\|1449544_1450600_+	hypothetical protein	A0A291AWV9	Escherichia_phage	4.0e-90	48.4
QAY48907.1\|1450600_1450981_+	Crossover junction endodeoxyribonuclease RusA	V5URS4	Shigella_phage	2.9e-35	64.5
QAY48908.1\|1450977_1451799_+	Chaperone protein DnaJ	K7P7B9	Enterobacteria_phage	1.7e-80	60.1
QAY48909.1\|1452025_1452223_+	hypothetical protein	Q9MC00	Enterobacteria_phage	6.1e-29	98.5
QAY48910.1\|1452374_1453424_+	Modification methylase DpnIIB	A0A0N7KZF8	Stx2-converting_phage	4.4e-198	95.4
QAY48911.1\|1454637_1454973_-	Anti-adapter protein IraM	Q8HAJ1	Enterobacteria_phage	5.2e-44	74.8
QAY48912.1\|1455233_1457087_+	putative 9-O-acetyl-N-acetylneuraminic acid deacetylase	Q08JA2	Stx2-converting_phage	0.0e+00	90.3
QAY48913.1\|1457237_1457453_+	hypothetical protein	G9L6J5	Escherichia_phage	9.0e-34	100.0
QAY48914.1\|1457457_1457802_+	hypothetical protein	K7PGU6	Enterobacteria_phage	2.8e-37	95.2
QAY48915.1\|1457767_1458040_-	hypothetical protein	NA	NA	NA	NA
QAY48916.1\|1458145_1458679_+	Lysozyme RrrD	Q6H9V6	Enterobacteria_phage	4.8e-100	95.5
QAY48917.1\|1458971_1459103_+	hypothetical protein	A0A0P0ZG36	Escherichia_phage	7.5e-07	74.4
QAY48918.1\|1459321_1459816_+	hypothetical protein	Q9ZXB6	Enterobacteria_phage	1.7e-72	87.7
QAY48919.1\|1459812_1460028_+	hypothetical protein	NA	NA	NA	NA
QAY48920.1\|1460226_1460427_-	hypothetical protein	H6WZK6	Escherichia_phage	4.3e-30	98.5
QAY48921.1\|1460468_1460834_+	hypothetical protein	B6ETE5	Enterobacteria_phage	2.5e-60	93.4
QAY48922.1\|1461124_1461688_+	hypothetical protein	A0A0P0ZD56	Stx2-converting_phage	1.6e-82	92.0
QAY48923.1\|1461684_1463346_+	hypothetical protein	B6DZ98	Enterobacteria_phage	0.0e+00	98.7
QAY48924.1\|1463409_1465347_+	hypothetical protein	H6WZL0	Escherichia_phage	0.0e+00	100.0
QAY48925.1\|1465391_1465613_+	hypothetical protein	B6DZA0	Enterobacteria_phage	5.8e-36	100.0
QAY48926.1\|1465558_1468144_+	hypothetical protein	A0A0P0ZDD0	Stx2-converting_phage	0.0e+00	100.0
QAY48927.1\|1468140_1468467_+	hypothetical protein	A0A0P0ZBH1	Stx2-converting_phage	9.2e-54	100.0
QAY48928.1\|1468476_1468827_+	hypothetical protein	A0A0P0ZB28	Stx2-converting_phage	1.6e-59	100.0
QAY48929.1\|1468823_1469270_+	hypothetical protein	A0A0N7KZI9	Stx2-converting_phage	5.2e-76	100.0
QAY48930.1\|1469266_1469611_+	hypothetical protein	A0A0P0ZC17	Stx2-converting_phage	1.4e-57	100.0
QAY48931.1\|1469677_1470394_+	hypothetical protein	A0A0P0ZDV1	Stx2-converting_phage	3.6e-127	99.6
QAY48932.1\|1470408_1470783_+	hypothetical protein	A0A0P0ZE84	Stx2-converting_phage	1.7e-64	99.2
QAY48933.1\|1470878_1471088_+	hypothetical protein	H6WZM0	Escherichia_phage	1.5e-33	100.0
QAY48934.1\|1471135_1474378_+	hypothetical protein	A0A0P0ZCJ4	Stx2-converting_phage	0.0e+00	91.6
QAY48935.1\|1474370_1474712_+	hypothetical protein	A0A0P0ZBQ8	Stx2-converting_phage	9.0e-60	95.6
QAY48936.1\|1474711_1475410_+	hypothetical protein	B6DZB1	Enterobacteria_phage	5.8e-130	97.4
QAY48937.1\|1475420_1476164_+	hypothetical protein	Q6H9T4	Enterobacteria_phage	4.3e-147	97.6
QAY48938.1\|1476160_1476742_+	hypothetical protein	H6WZM5	Escherichia_phage	1.3e-90	97.4
QAY48939.1\|1477084_1480558_+	hypothetical protein	A0A0P0ZBW1	Stx2-converting_phage	0.0e+00	89.7
QAY48940.1\|1480625_1481084_+	Outer membrane protein X	Q9EV15	Enterobacteria_phage	9.5e-65	89.0
QAY48941.1\|1481198_1482740_+	hypothetical protein	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
QAY48942.1\|1482754_1483501_+	Insertion sequence IS5376 putative ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
QAY48943.1\|1484459_1485197_-	hypothetical protein	NA	NA	NA	NA
QAY48944.1\|1485438_1486869_+	hypothetical protein	A0A0F7LDR4	Escherichia_phage	3.8e-112	47.9
QAY48945.1\|1486884_1487412_+	hypothetical protein	A0A0C4UR05	Shigella_phage	8.4e-73	77.7
QAY48946.1\|1487442_1487976_-	hypothetical protein	A0A077SL44	Escherichia_phage	1.8e-67	70.1
QAY48947.1\|1487977_1488763_-	hypothetical protein	Q858V4	Yersinia_virus	1.3e-109	77.8
QAY48948.1\|1488935_1489025_+	hypothetical protein	NA	NA	NA	NA
QAY48949.1\|1489371_1490028_-	hypothetical protein	NA	NA	NA	NA
QAY48950.1\|1490096_1490366_+	hypothetical protein	K7PMH7	Enterobacteria_phage	9.3e-20	79.4
QAY48951.1\|1490480_1490651_+	hypothetical protein	A0A0U2RK60	Escherichia_phage	9.4e-10	62.5
QAY48952.1\|1490777_1491335_-	hypothetical protein	Q8H9L9	Vibrio_phage	4.2e-30	63.8
QAY48953.1\|1491982_1492789_-	Tryptophan synthase alpha chain	NA	NA	NA	NA
QAY48954.1\|1492788_1493982_-	Tryptophan synthase beta chain	NA	NA	NA	NA
QAY48955.1\|1493993_1495352_-	Tryptophan biosynthesis protein TrpCF	A0A0P0IR83	Acinetobacter_phage	3.9e-37	41.2

DBSCAN-SWA_6

1721680 : 1730507

Escherichia_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY49154.1\|1721680_1722895_-	Starvation-sensing protein RspA	Q6A202	Oenococcus_phage	8.2e-47	29.2
QAY49155.1\|1723100_1723427_-	hypothetical protein	A0A218MNG8	uncultured_virus	9.9e-24	55.6
QAY49156.1\|1723561_1723903_+	hypothetical protein	NA	NA	NA	NA
QAY49157.1\|1723937_1724498_+	Spermidine N(1)-acetyltransferase	NA	NA	NA	NA
QAY49158.1\|1724500_1725247_-	hypothetical protein	NA	NA	NA	NA
QAY49159.1\|1725318_1725624_+	hypothetical protein	NA	NA	NA	NA
QAY49160.1\|1725822_1728249_+	Putative dimethyl sulfoxide reductase chain YnfE	A0A077SK27	Escherichia_phage	1.7e-213	49.2
QAY49161.1\|1728336_1729071_+	putative dimethyl sulfoxide reductase chain YnfF	A0A077SK27	Escherichia_phage	1.4e-46	48.3
QAY49162.1\|1729067_1729805_+	putative dimethyl sulfoxide reductase chain YnfF	A0A077SK27	Escherichia_phage	4.6e-45	41.1
QAY49163.1\|1729889_1730507_+	Anaerobic dimethyl sulfoxide reductase chain B	A0A077SL61	Escherichia_phage	9.5e-76	59.6

DBSCAN-SWA_7

2044661 : 2070636

Escherichia_phage(36.36%)

tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY49469.1\|2044661_2045081_-	hypothetical protein	G8C7Q7	Escherichia_phage	1.8e-49	68.8
QAY49470.1\|2045247_2045412_-	hypothetical protein	NA	NA	NA	NA
QAY49471.1\|2045518_2046292_-	hypothetical protein	R9TNM7	Vibrio_phage	9.2e-28	30.7
QAY49472.1\|2046681_2047071_-	hypothetical protein	E5FFG4	Burkholderia_phage	1.0e-14	37.9
QAY49473.1\|2047106_2048747_-	hypothetical protein	A0A2I7R3J9	Vibrio_phage	1.2e-19	29.3
QAY49474.1\|2048855_2049137_-	hypothetical protein	NA	NA	NA	NA
QAY49475.1\|2049149_2049662_-	hypothetical protein	NA	NA	NA	NA
QAY49476.1\|2049679_2051182_-\|tail	Putative prophage major tail sheath protein	R9TMQ0	Vibrio_phage	5.5e-69	33.5
QAY49477.1\|2051178_2051568_-	hypothetical protein	A0A2H4EXG4	Aeromonas_phage	9.4e-05	30.8
QAY49478.1\|2051567_2052752_-	hypothetical protein	J9QDX3	Clostridium_phage	2.5e-16	35.2
QAY49479.1\|2052744_2053371_-	hypothetical protein	A0A193GYD1	Enterobacter_phage	2.0e-25	38.8
QAY49480.1\|2053373_2054294_-	hypothetical protein	D5LGZ3	Escherichia_phage	6.4e-68	47.8
QAY49481.1\|2054290_2054680_-	hypothetical protein	D4HTV2	Vibrio_phage	2.1e-20	51.6
QAY49482.1\|2054634_2055537_-	hypothetical protein	NA	NA	NA	NA
QAY49483.1\|2055517_2056054_-	hypothetical protein	NA	NA	NA	NA
QAY49484.1\|2056050_2056731_-	hypothetical protein	NA	NA	NA	NA
QAY49485.1\|2056762_2057143_-	hypothetical protein	NA	NA	NA	NA
QAY49486.1\|2057139_2057559_-	hypothetical protein	NA	NA	NA	NA
QAY49487.1\|2057593_2058628_-	hypothetical protein	A0A2I6TCE5	Escherichia_phage	6.6e-106	56.5
QAY49488.1\|2058686_2059016_-	hypothetical protein	A0A2R9YJN3	Escherichia_phage	2.0e-08	39.5
QAY49489.1\|2059015_2060323_-	Putative signal peptide peptidase SppA	A0A2I6TC87	Escherichia_phage	4.9e-106	53.7
QAY49490.1\|2060322_2061897_-	hypothetical protein	E4WL21	Enterobacteria_phage	8.6e-190	64.0
QAY49491.1\|2061893_2062127_-	hypothetical protein	NA	NA	NA	NA
QAY49492.1\|2062126_2064007_-	hypothetical protein	A0A1I9KF19	Aeromonas_phage	1.1e-191	53.2
QAY49493.1\|2063975_2064542_-	hypothetical protein	A0A1I9KFT4	Aeromonas_phage	2.9e-31	46.2
QAY49494.1\|2064910_2065156_+	hypothetical protein	NA	NA	NA	NA
QAY49495.1\|2065417_2065897_-	hypothetical protein	A0A222YWL8	Escherichia_phage	4.6e-62	68.8
QAY49496.1\|2065896_2066169_-	hypothetical protein	A0A0A0YPY6	Escherichia_phage	9.8e-09	42.9
QAY49497.1\|2066168_2066552_-	hypothetical protein	NA	NA	NA	NA
QAY49498.1\|2066664_2067336_-	hypothetical protein	Q7Y3X2	Yersinia_phage	1.9e-16	33.5
QAY49499.1\|2067335_2067629_-	hypothetical protein	A0A0U2KD41	Escherichia_phage	3.3e-34	70.5
QAY49500.1\|2067625_2068222_-	hypothetical protein	H9C173	Pectobacterium_phage	1.5e-70	64.1
QAY49501.1\|2068299_2068479_-	hypothetical protein	NA	NA	NA	NA
QAY49502.1\|2068630_2069272_-	hypothetical protein	NA	NA	NA	NA
QAY49503.1\|2069515_2069749_+	hypothetical protein	NA	NA	NA	NA
QAY49504.1\|2070147_2070636_+	hypothetical protein	A0A142KB62	Gordonia_phage	6.4e-27	42.7

DBSCAN-SWA_8

2074698 : 2086867

Pectobacterium_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY49508.1\|2074698_2075487_-	hypothetical protein	A0A0P0ZC44	Stx2-converting_phage	1.1e-39	69.8
QAY49509.1\|2075759_2075981_-	hypothetical protein	NA	NA	NA	NA
QAY49510.1\|2076055_2076172_-	hypothetical protein	NA	NA	NA	NA
QAY49511.1\|2076168_2076393_-	hypothetical protein	NA	NA	NA	NA
QAY49512.1\|2076389_2076701_-	hypothetical protein	A0A222YXX1	Escherichia_phage	1.2e-34	65.7
QAY49513.1\|2076697_2076934_-	hypothetical protein	NA	NA	NA	NA
QAY49514.1\|2076935_2077346_-	hypothetical protein	NA	NA	NA	NA
QAY49515.1\|2077384_2078800_-	Replicative DNA helicase	H9C165	Pectobacterium_phage	6.6e-173	66.7
QAY49516.1\|2078789_2079545_-	hypothetical protein	H9C164	Pectobacterium_phage	2.4e-41	68.5
QAY49517.1\|2079541_2079766_-	hypothetical protein	H9C163	Pectobacterium_phage	6.1e-17	54.1
QAY49518.1\|2079805_2080282_-	hypothetical protein	H9C162	Pectobacterium_phage	1.9e-23	48.6
QAY49519.1\|2080340_2080571_-	hypothetical protein	H6WRX5	Salmonella_phage	1.5e-21	63.2
QAY49520.1\|2080669_2081083_+	hypothetical protein	A0A1B5FPF4	Escherichia_phage	8.7e-09	49.1
QAY49521.1\|2082093_2082414_+	hypothetical protein	NA	NA	NA	NA
QAY49522.1\|2082444_2084661_+	hypothetical protein	H9C157	Pectobacterium_phage	4.7e-101	35.6
QAY49523.1\|2084657_2085227_+	hypothetical protein	H9C156	Pectobacterium_phage	6.1e-37	49.2
QAY49524.1\|2085226_2085409_+	hypothetical protein	NA	NA	NA	NA
QAY49525.1\|2085618_2085882_+	hypothetical protein	H9C153	Pectobacterium_phage	1.2e-06	38.0
QAY49526.1\|2085850_2086867_+	hypothetical protein	H9C152	Pectobacterium_phage	1.1e-126	63.6

DBSCAN-SWA_9

2231008 : 2237460

Acidithiobacillus_phage(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY49652.1\|2231008_2232550_+	hypothetical protein	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
QAY49653.1\|2232564_2233311_+	Insertion sequence IS5376 putative ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
QAY49654.1\|2233474_2233744_+	hypothetical protein	NA	NA	NA	NA
QAY49655.1\|2233759_2234170_+	hypothetical protein	NA	NA	NA	NA
QAY49656.1\|2234390_2235209_+	hypothetical protein	A0A2C9CX26	Yersinia_phage	8.8e-45	38.6
QAY49657.1\|2235208_2235454_+	hypothetical protein	NA	NA	NA	NA
QAY49658.1\|2235547_2236021_+	Antirestriction protein KlcA	A0A2D0W9W4	Bordetella_phage	4.3e-12	33.1
QAY49659.1\|2236036_2236513_+	hypothetical protein	NA	NA	NA	NA
QAY49660.1\|2236575_2236797_+	hypothetical protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
QAY49661.1\|2236815_2237460_+	hypothetical protein	A0A2I6PI07	Pseudomonas_phage	1.8e-24	32.9

DBSCAN-SWA_10

2268263 : 2274566

Enterobacteria_phage(66.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY49694.1\|2268263_2268806_-	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	6.0e-50	61.8
QAY49695.1\|2268810_2269689_-	Glucose-1-phosphate thymidylyltransferase 1	I7I009	Enterobacteria_phage	6.6e-107	64.5
QAY49696.1\|2269746_2270646_-	dTDP-4-dehydrorhamnose reductase	I7HXC9	Enterobacteria_phage	1.7e-28	34.8
QAY49697.1\|2270645_2271731_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	8.8e-101	53.9
QAY49698.1\|2272103_2272997_-	UTP--glucose-1-phosphate uridylyltransferase	A0A127AW70	Bacillus_phage	3.0e-46	42.0
QAY49699.1\|2273171_2274566_-	hypothetical protein	A0A291LBB9	Klebsiella_phage	6.3e-19	33.0

DBSCAN-SWA_11

2368742 : 2378187

Enterobacteria_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY49772.1\|2368742_2369879_+	hypothetical protein	Q9EYF7	Enterobacteria_phage	6.1e-161	96.7
QAY49773.1\|2369875_2371879_+	hypothetical protein	Q9EYF6	Enterobacteria_phage	0.0e+00	95.7
QAY49774.1\|2372003_2372465_+	putative lipoprotein YehR	Q9EYF5	Enterobacteria_phage	3.2e-76	99.3
QAY49775.1\|2372505_2372976_-	hypothetical protein	Q9EYF4	Enterobacteria_phage	1.8e-82	100.0
QAY49776.1\|2373022_2373742_-	Transcriptional regulatory protein YehT	NA	NA	NA	NA
QAY49777.1\|2373738_2375424_-	Sensor histidine kinase YehU	Q9EYF3	Enterobacteria_phage	2.5e-304	99.6
QAY49778.1\|2375645_2376377_+	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	6.3e-111	98.5
QAY49779.1\|2376436_2376544_+	hypothetical protein	NA	NA	NA	NA
QAY49780.1\|2376524_2377256_-	Glycine betaine uptake system permease protein YehW	NA	NA	NA	NA
QAY49781.1\|2377260_2378187_-	Glycine betaine uptake system ATP-binding protein YehX	G3M9Y6	Bacillus_virus	1.3e-23	30.8

DBSCAN-SWA_12

2955614 : 2962754

Escherichia_phage(83.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY50298.1\|2955614_2958176_+	DNA mismatch repair protein MutS	E3T5Q7	Cafeteria_roenbergensis_virus	1.6e-31	20.8
QAY50299.1\|2958281_2958938_+	Serine/threonine-protein phosphatase 2	A0A077SLQ6	Escherichia_phage	3.3e-50	46.1
QAY50300.1\|2958988_2959756_-	HTH-type transcriptional repressor GlcR	A0A077SK06	Escherichia_phage	9.7e-70	57.4
QAY50301.1\|2959951_2960860_+	2-hydroxy-3-oxopropionate reductase	A0A077SLF7	Escherichia_phage	1.9e-117	76.2
QAY50302.1\|2960856_2962119_+	hypothetical protein	A0A077SLJ7	Escherichia_phage	2.2e-135	61.4
QAY50303.1\|2962115_2962754_+	L-fuculose phosphate aldolase	A0A077SK32	Escherichia_phage	1.4e-82	74.5

DBSCAN-SWA_13

4051776 : 4059154

Sodalis_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY51323.1\|4051776_4052379_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	2.6e-25	36.3
QAY51324.1\|4052389_4052731_+	hypothetical protein	A0A1B5FPL8	Escherichia_phage	2.5e-33	61.5
QAY51325.1\|4052723_4053095_+	hypothetical protein	NA	NA	NA	NA
QAY51326.1\|4053081_4055838_+	DNA primase TraC	A0A1W6JPG0	Morganella_phage	1.8e-299	57.3
QAY51327.1\|4056422_4056584_+	hypothetical protein	NA	NA	NA	NA
QAY51328.1\|4056600_4057062_+	hypothetical protein	Q2A0B3	Sodalis_phage	9.9e-62	72.2
QAY51329.1\|4057055_4057733_+	hypothetical protein	Q2A0B2	Sodalis_phage	9.2e-56	71.6
QAY51330.1\|4057732_4059154_+	hypothetical protein	B6SCW4	Bacteriophage	5.7e-124	53.2

DBSCAN-SWA_14

4722626 : 4729690

Escherichia_phage(50.0%)

integrase

attL 4715619:4715632|attR 4731341:4731354

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4715619:4715632	attL	NA	NA	NA	NA
QAY51925.1\|4722626_4723130_+	hypothetical protein	U5P0U6	Shigella_phage	5.3e-93	98.2
QAY51926.1\|4724155_4724656_+	Transcriptional repressor MprA	NA	NA	NA	NA
QAY51927.1\|4725122_4725500_-	hypothetical protein	Q71TF0	Escherichia_phage	1.1e-66	99.2
QAY51928.1\|4725544_4725820_-	hypothetical protein	Q71TE9	Escherichia_phage	2.0e-46	98.9
QAY51929.1\|4726470_4726764_-	hypothetical protein	U5P0U6	Shigella_phage	8.3e-46	92.8
QAY51930.1\|4726892_4727168_-	hypothetical protein	Q71TE9	Escherichia_phage	7.7e-46	96.7
QAY51931.1\|4727218_4728169_-	hypothetical protein	NA	NA	NA	NA
QAY51932.1\|4728424_4729690_-\|integrase	Prophage integrase IntS	Q7M297	Enterobacteria_phage	2.3e-76	37.8
4731341:4731354	attR	NA	NA	NA	NA

DBSCAN-SWA_15

4888001 : 4894782

Shigella_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY52087.1\|4888001_4889999_-	Glycine betaine transporter	A0A2I7QNT1	Vibrio_phage	4.4e-21	25.9
QAY52088.1\|4890153_4890972_-	hypothetical protein	A0A0P0I4A4	Acinetobacter_phage	1.2e-65	45.2
QAY52089.1\|4891007_4891310_-	hypothetical protein	NA	NA	NA	NA
QAY52090.1\|4891508_4891922_+	hypothetical protein	Q716C2	Shigella_phage	5.2e-62	96.5
QAY52091.1\|4891918_4892161_+	hypothetical protein	Q716C2	Shigella_phage	4.7e-39	92.4
QAY52092.1\|4892243_4892501_+	hypothetical protein	NA	NA	NA	NA
QAY52093.1\|4893057_4893825_-	Fe(3+) dicitrate transport ATP-binding protein FecE	G3M9Y6	Bacillus_virus	6.4e-13	24.8
QAY52094.1\|4893825_4894782_-	Fe(3+) dicitrate transport system permease protein FecD	A0A2H4IY97	uncultured_Caudovirales_phage	1.1e-17	26.1

DBSCAN-SWA_16

4917448 : 4924110

Enterobacteria_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY52117.1\|4917448_4918195_-	Insertion sequence IS5376 putative ATP-binding protein	U5N3V8	Enterobacteria_phage	3.5e-24	31.6
QAY52118.1\|4918209_4919751_-	hypothetical protein	K4I413	Acidithiobacillus_phage	1.7e-129	46.4
QAY52119.1\|4919931_4920567_+	hypothetical protein	NA	NA	NA	NA
QAY52120.1\|4920908_4921382_+	Antirestriction protein KlcA	A9J566	Pseudomonas_phage	8.7e-13	30.3
QAY52121.1\|4921397_4921874_+	hypothetical protein	NA	NA	NA	NA
QAY52122.1\|4921936_4922158_+	hypothetical protein	A0A142F0X9	Klebsiella_phage	1.9e-10	45.8
QAY52123.1\|4922157_4922271_+	hypothetical protein	NA	NA	NA	NA
QAY52124.1\|4922320_4922689_+	Cytoskeleton bundling-enhancing protein CbeA	NA	NA	NA	NA
QAY52125.1\|4922778_4923156_+	Cytoskeleton-binding toxin CbtA	NA	NA	NA	NA
QAY52126.1\|4923152_4923323_+	hypothetical protein	NA	NA	NA	NA
QAY52127.1\|4923337_4923763_+	hypothetical protein	Q6H9S5	Enterobacteria_phage	1.5e-48	99.0
QAY52128.1\|4923759_4924110_+	hypothetical protein	A0A0P0ZBY2	Stx2-converting_phage	4.7e-40	66.4

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP035478

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

72685 : 81927

Escherichia_phage(55.56%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY52338.1\|72685_75802_-	Type I restriction enzyme EcoR124II R protein	A0A220A398	Liberibacter_phage	3.7e-27	24.0
QAY52339.1\|75923_77207_-	hypothetical protein	F2Y1N5	Organic_Lake_phycodnavirus	2.2e-10	26.5
QAY52340.1\|77203_78760_-	putative type I restriction enzymeP M protein	A0A2H4PQP4	Staphylococcus_phage	3.2e-104	42.7
QAY52341.1\|78942_79164_+	hypothetical protein	A0A222YXU1	Escherichia_phage	6.7e-32	100.0
QAY52342.1\|79163_79544_+	Toxin Doc	A0A077SK56	Escherichia_phage	1.1e-63	100.0
QAY52343.1\|79548_79728_+	hypothetical protein	Q71TH5	Escherichia_phage	3.5e-23	96.6
QAY52344.1\|79755_80115_+	hypothetical protein	A0A077SLM1	Escherichia_phage	5.0e-45	98.9
QAY52345.1\|80077_80452_+	hypothetical protein	Q716C2	Shigella_phage	5.4e-66	94.3
QAY52346.1\|80401_80719_-	hypothetical protein	NA	NA	NA	NA
QAY52347.1\|80946_81927_-	hypothetical protein	Q38213	Escherichia_phage	6.1e-186	99.4

DBSCAN-SWA_2

96875 : 104603

Stx2-converting_phage(45.45%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY52361.1\|96875_97394_-	hypothetical protein	A0A0P0ZEB3	Stx2-converting_phage	6.5e-94	99.4
QAY52362.1\|97551_98331_-	Insertion sequence IS5376 putative ATP-binding protein	A0A2L1IVB6	Escherichia_phage	1.5e-139	100.0
QAY52363.1\|98330_99353_-	hypothetical protein	A0A2L1IVA1	Escherichia_phage	3.2e-201	99.7
QAY52364.1\|99366_100125_-	hypothetical protein	A0A0P0ZBS5	Stx2-converting_phage	9.1e-129	96.9
QAY52365.1\|100126_100384_-	hypothetical protein	A0A0P0ZEB3	Stx2-converting_phage	2.3e-31	97.4
QAY52366.1\|100432_100780_-	hypothetical protein	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
QAY52367.1\|100776_101181_-	hypothetical protein	A0A0P0ZCV4	Stx2-converting_phage	3.0e-70	100.0
QAY52368.1\|101209_101566_-	hypothetical protein	Q6H9S3	Enterobacteria_phage	3.6e-51	99.0
QAY52369.1\|101682_103206_-	Group II intron-encoded protein LtrA	A0A0U4J920	Pseudomonas_phage	6.2e-44	31.8
QAY52370.1\|103499_103871_+	hypothetical protein	NA	NA	NA	NA
QAY52371.1\|103797_104277_-	hypothetical protein	A0A0N7C035	Escherichia_phage	2.7e-70	94.9
QAY52372.1\|104276_104603_-	Insertion element IS6110 uncharacterized 12.0 kDa protein	Q6H9S4	Enterobacteria_phage	1.8e-54	97.2

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP035477

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP035478

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection