CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035501	Sphingosinicella sp. BN140058 chromosome, complete genome	0 crisprs	csa3,WYL,DinG,DEDDh,cas3	0	0	2	0
CP035502	Sphingosinicella sp. BN140058 plasmid p1, complete sequence	0 crisprs	DEDDh	0	0	0	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

3641067 : 3658701

Paracoccus_phage(25.0%)

capsid,portal,head,terminase,tail,protease

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY77910.1\|3641067_3644343_+	hypothetical protein	R9TSC7	Rhizobium_phage	5.1e-67	34.7
QAY77911.1\|3644550_3645057_+	hypothetical protein	NA	NA	NA	NA
QAY77912.1\|3645240_3645597_+	HNH endonuclease	NA	NA	NA	NA
QAY77913.1\|3645627_3646110_+	AraC family transcriptional regulator	I3ULZ5	Rhodobacter_phage	8.3e-19	38.8
QAY77914.1\|3646119_3647892_+\|terminase	terminase large subunit	H6WZK9	Escherichia_phage	7.1e-132	43.9
QAY79942.1\|3647969_3649211_+\|portal	phage portal protein	A0A0U2BXP2	Paracoccus_phage	2.4e-102	52.4
QAY77915.1\|3649207_3649867_+\|head,protease	HK97 family phage prohead protease	A0A2H4JAI0	uncultured_Caudovirales_phage	4.6e-44	45.5
QAY77916.1\|3649889_3651293_+\|capsid	phage major capsid protein	A0A2H4JD98	uncultured_Caudovirales_phage	1.7e-96	52.5
QAY77917.1\|3651355_3651634_+	hypothetical protein	NA	NA	NA	NA
QAY77918.1\|3651633_3653238_+	hypothetical protein	NA	NA	NA	NA
QAY77919.1\|3653262_3653838_+	hypothetical protein	NA	NA	NA	NA
QAY77920.1\|3653837_3654170_+\|head,tail	head-tail adaptor protein	NA	NA	NA	NA
QAY77921.1\|3654169_3654604_+	hypothetical protein	A0A0U2C0P4	Paracoccus_phage	4.7e-05	29.8
QAY77922.1\|3654606_3655044_+	DUF3168 domain-containing protein	NA	NA	NA	NA
QAY77923.1\|3655045_3655492_+	hypothetical protein	NA	NA	NA	NA
QAY77924.1\|3655494_3655902_+	hypothetical protein	NA	NA	NA	NA
QAY77925.1\|3655949_3656171_+	hypothetical protein	NA	NA	NA	NA
QAY77926.1\|3656181_3658701_+\|tail	phage tail tape measure protein	M4QNS0	Tetraselmis_viridis_virus	4.6e-68	50.2

DBSCAN-SWA_2

5340736 : 5382277

Bacillus_phage(33.33%)

tail,protease,tRNA,plate

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAY79304.1\|5340736_5341735_+\|tRNA	tRNA dihydrouridine synthase DusB	NA	NA	NA	NA
QAY80083.1\|5341916_5344085_+	HAMP domain-containing protein	W8CYF6	Bacillus_phage	2.1e-05	24.3
QAY79305.1\|5344087_5345476_+	sigma-54-dependent Fis family transcriptional regulator	NA	NA	NA	NA
QAY79306.1\|5345630_5346128_+	RNA chaperone Hfq	NA	NA	NA	NA
QAY79307.1\|5346124_5347441_+	GTPase HflX	NA	NA	NA	NA
QAY79308.1\|5347437_5348376_-	nucleoside triphosphate pyrophosphohydrolase	NA	NA	NA	NA
QAY79309.1\|5348407_5351089_+	ATP-binding protein	K9MCS8	Sulfolobus_virus	4.1e-06	30.8
QAY79310.1\|5351088_5351661_+	DUF4255 domain-containing protein	NA	NA	NA	NA
QAY79311.1\|5351657_5352350_+	hypothetical protein	NA	NA	NA	NA
QAY79312.1\|5352389_5353487_+	hypothetical protein	NA	NA	NA	NA
QAY79313.1\|5353518_5355051_+\|tail	phage tail sheath family protein	J9PVC2	Bacillus_phage	6.9e-67	33.1
QAY79314.1\|5355073_5355508_+\|tail	phage tail protein	A0A1J0GW41	Streptomyces_phage	1.0e-12	35.0
QAY79315.1\|5355520_5355907_+	hypothetical protein	NA	NA	NA	NA
QAY79316.1\|5355906_5356086_+	hypothetical protein	NA	NA	NA	NA
QAY79317.1\|5356087_5356537_+\|tail	phage tail protein	NA	NA	NA	NA
QAY79318.1\|5356533_5357592_+	hypothetical protein	NA	NA	NA	NA
QAY79319.1\|5357602_5358304_+	LysM peptidoglycan-binding domain-containing protein	NA	NA	NA	NA
QAY79320.1\|5358281_5359400_+	phage late control D family protein	NA	NA	NA	NA
QAY79321.1\|5359396_5360032_+\|tail	phage tail protein	NA	NA	NA	NA
QAY79322.1\|5360031_5360331_+	hypothetical protein	NA	NA	NA	NA
QAY79323.1\|5360332_5360749_+\|plate	baseplate protein	A0A1D8KR06	Synechococcus_phage	9.4e-11	33.3
QAY79324.1\|5360745_5365713_+	hypothetical protein	NA	NA	NA	NA
QAY79325.1\|5365709_5367581_+	hypothetical protein	NA	NA	NA	NA
QAY79326.1\|5367577_5369569_+	hypothetical protein	NA	NA	NA	NA
QAY79327.1\|5369589_5371194_+	hypothetical protein	NA	NA	NA	NA
QAY79328.1\|5371190_5372477_+	hypothetical protein	NA	NA	NA	NA
QAY79329.1\|5372495_5376392_+	hypothetical protein	NA	NA	NA	NA
QAY79330.1\|5376403_5377039_+	hypothetical protein	NA	NA	NA	NA
QAY79331.1\|5377067_5377604_+	hypothetical protein	NA	NA	NA	NA
QAY79332.1\|5377600_5378272_-	response regulator transcription factor	NA	NA	NA	NA
QAY79333.1\|5378939_5380361_+	GHKL domain-containing protein	A0A1V0SGX0	Hokovirus	3.1e-05	29.0
QAY79334.1\|5380364_5381675_-	class I SAM-dependent methyltransferase	NA	NA	NA	NA
QAY80084.1\|5381788_5382277_-\|protease	TIGR02281 family clan AA aspartic protease	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage