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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP025248 Salmonella enterica subsp. enterica serovar Newport str. CDC 2009K-1331 chromosome, complete genome 2 crisprs cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas14j,DEDDh,DinG 0 16 9 0

Results visualization

1. CP025248
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025248_2 974960-975994 TypeI-E I-E
16 spacers
cas3,cas8e

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP025248_3 992241-993062 TypeI-E I-E
13 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 NZ_CP027613 Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed1, complete sequence 89096-89127 4 0.875
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 NZ_CP054718 Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence 37931-37962 4 0.875
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 CP051275 Salmonella phage SW-37, complete genome 24498-24529 4 0.875
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 MW013502 Salmonella virus L cI-40 13-am43, complete genome 22995-23026 4 0.875
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 MN098327 Klebsiella phage Mulock, complete genome 37856-37887 4 0.875
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 NC_004348 Enterobacteria phage ST64T, complete genome 6181-6212 4 0.875
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 MW013503 Salmonella virus L cII-101, complete genome 22995-23026 4 0.875
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 NC_018275 Salmonella phage vB_SemP_Emek, complete genome 23161-23192 4 0.875
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 NC_042346 Salmonella virus BTP1 genome assembly, chromosome: BTP1 21878-21909 4 0.875
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 AY052766 Salmonella typhimurium bacteriophage ST64T, complete genome 6181-6212 4 0.875
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 MF188997 Salmonella phage vB_SalP_PM43, complete genome 6181-6212 4 0.875
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 NZ_CP054718 Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence 11202-11233 6 0.812
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 NZ_CP054718 Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence 115172-115203 6 0.812
CP025248_2 2.17|975450|32|CP025248|PILER-CR 975450-975481 32 NC_011366 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence 208454-208485 7 0.781
CP025248_2 2.17|975450|32|CP025248|PILER-CR 975450-975481 32 NC_017958 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence 449563-449594 7 0.781
CP025248_2 2.17|975450|32|CP025248|PILER-CR 975450-975481 32 NZ_CP035001 Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence 167100-167131 7 0.781
CP025248_3 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992392-992423 32 NZ_CP050083 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence 24085-24116 7 0.781
CP025248_2 2.4|975172|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 975172-975203 32 NZ_CP042626 Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence 1117-1148 8 0.75
CP025248_3 3.1|992270|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992270-992301 32 NZ_CP032319 Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence 4010-4041 8 0.75
CP025248_3 3.4|992453|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992453-992484 32 NZ_CP032703 Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence 17112-17143 8 0.75
CP025248_3 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992575-992606 32 NC_016907 Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence 64697-64728 8 0.75
CP025248_3 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992575-992606 32 NZ_CP010858 Marinovum algicola DG 898 plasmid pMaD3 3485-3516 8 0.75
CP025248_2 2.1|974989|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 974989-975020 32 MT711528 Escherichia phage vB_EcoS_fTaEco03, complete genome 12261-12292 9 0.719
CP025248_2 2.1|974989|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 974989-975020 32 MT711525 Escherichia phage vB_EcoS_fKuEco01, complete genome 11823-11854 9 0.719
CP025248_2 2.1|974989|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 974989-975020 32 GU196278 Escherichia phage K1H, complete genome 12039-12070 9 0.719
CP025248_2 2.1|974989|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 974989-975020 32 NC_027993 Escherichia phage K1G, complete genome 13924-13955 9 0.719
CP025248_2 2.1|974989|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 974989-975020 32 MT711527 Escherichia phage vB_EcoS_fTaEco01, complete genome 11822-11853 9 0.719
CP025248_2 2.2|975050|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 975050-975081 32 NC_011255 Borrelia recurrentis A1 plasmid pl35, complete sequence 27906-27937 9 0.719
CP025248_2 2.2|975050|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 975050-975081 32 NC_011249 Borrelia duttonii Ly plasmid pl36, complete sequence 31225-31256 9 0.719
CP025248_2 2.2|975050|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 975050-975081 32 NZ_CP032297 Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence 360899-360930 9 0.719
CP025248_2 2.2|975050|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 975050-975081 32 NZ_CP034837 Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence 234035-234066 9 0.719
CP025248_2 2.12|975690|32|CP025248|CRISPRCasFinder,CRT 975690-975721 32 MN694645 Marine virus AFVG_250M761, complete genome 31050-31081 9 0.719
CP025248_2 2.17|975450|32|CP025248|PILER-CR 975450-975481 32 DQ674738 Aeromonas phage phiO18P, complete genome 15707-15738 9 0.719
CP025248_2 2.17|975450|32|CP025248|PILER-CR 975450-975481 32 NZ_CP031166 Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence 380725-380756 9 0.719
CP025248_2 2.17|975450|32|CP025248|PILER-CR 975450-975481 32 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 153785-153816 9 0.719
CP025248_2 2.21|975694|32|CP025248|PILER-CR 975694-975725 32 MN694645 Marine virus AFVG_250M761, complete genome 31050-31081 9 0.719
CP025248_3 3.1|992270|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992270-992301 32 NZ_CP023408 Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence 264920-264951 9 0.719
CP025248_3 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992392-992423 32 NZ_CP031397 Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence 50720-50751 9 0.719
CP025248_3 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992392-992423 32 NZ_CP019854 Borreliella burgdorferi plasmid lp54, complete sequence 50432-50463 9 0.719
CP025248_3 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992392-992423 32 NZ_CP019765 Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence 50432-50463 9 0.719
CP025248_3 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992392-992423 32 NC_011784 Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence 50419-50450 9 0.719
CP025248_3 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992392-992423 32 NZ_CP017218 Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence 3209-3240 9 0.719
CP025248_3 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992392-992423 32 NC_013130 Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence 50566-50597 9 0.719
CP025248_3 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992392-992423 32 NC_013129 Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence 49711-49742 9 0.719
CP025248_3 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992392-992423 32 NC_001857 Borreliella burgdorferi B31 plasmid lp54, complete sequence 50439-50470 9 0.719
CP025248_3 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992514-992545 32 NZ_CP022925 Klebsiella pneumoniae strain ST307PT01 plasmid pJYC01B 25058-25082 9 0.719
CP025248_3 3.13|992941|32|CP025248|CRISPRCasFinder,CRT 992941-992972 32 NZ_CP050096 Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence 151458-151489 9 0.719
CP025248_3 3.13|992941|32|CP025248|CRISPRCasFinder,CRT 992941-992972 32 NZ_CP050102 Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence 132694-132725 9 0.719
CP025248_3 3.13|992941|32|CP025248|CRISPRCasFinder,CRT 992941-992972 32 NZ_CP050107 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence 169943-169974 9 0.719
CP025248_3 3.13|992941|32|CP025248|CRISPRCasFinder,CRT 992941-992972 32 NZ_CP050112 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence 169942-169973 9 0.719
CP025248_3 3.13|992941|32|CP025248|CRISPRCasFinder,CRT 992941-992972 32 NZ_CP048285 Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence 30547-30578 9 0.719
CP025248_2 2.4|975172|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 975172-975203 32 LR026976 Bacillus pumilus isolate 1 genome assembly, plasmid: p576 23626-23657 10 0.688
CP025248_2 2.4|975172|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 975172-975203 32 NC_022882 Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence 54509-54540 10 0.688
CP025248_2 2.16|975934|32|CP025248|CRISPRCasFinder,CRT 975934-975965 32 NZ_CP054615 Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence 146919-146950 10 0.688
CP025248_3 3.1|992270|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992270-992301 32 NZ_CP006373 Aureimonas sp. AU20 plasmid pAU20f, complete sequence 26111-26142 10 0.688
CP025248_3 3.2|992331|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992331-992362 32 CP009871 Pantoea sp. PSNIH2 plasmid pPSP-cd6, complete sequence 51629-51660 10 0.688
CP025248_3 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992575-992606 32 NC_005262 Burkholderia cepacia phage Bcep22, complete genome 17206-17237 10 0.688
CP025248_3 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992575-992606 32 NZ_CP015746 Shinella sp. HZN7 plasmid pShin-10, complete sequence 61466-61497 10 0.688
CP025248_3 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992575-992606 32 NZ_CP019446 Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-1, complete sequence 17753-17784 10 0.688
CP025248_3 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992575-992606 32 NZ_CP032923 Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence 101360-101391 10 0.688
CP025248_3 3.9|992758|32|CP025248|PILER-CR,CRISPRCasFinder,CRT 992758-992789 32 NC_019957 Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence 63429-63460 10 0.688
CP025248_2 2.17|975450|32|CP025248|PILER-CR 975450-975481 32 NZ_CP054036 Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence 234768-234799 11 0.656
CP025248_2 2.17|975450|32|CP025248|PILER-CR 975450-975481 32 NZ_CP022568 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence 299431-299462 11 0.656
CP025248_3 3.14|993002|32|CP025248|CRISPRCasFinder,CRT 993002-993033 32 CP054927 Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence 47822-47853 11 0.656

1. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP027613 (Klebsiella pneumoniae subsp. ozaenae strain AR_0096 plasmid unnamed1, complete sequence) position: , mismatch: 4, identity: 0.875

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggagagccgcgcct	Protospacer
*********** ********.********..*

2. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.875

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggcgagccgcggct	Protospacer
*********** ******** ******** .*

3. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to CP051275 (Salmonella phage SW-37, complete genome) position: , mismatch: 4, identity: 0.875

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggtgagccgcggct	Protospacer
*********** ******** ******** .*

4. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to MW013502 (Salmonella virus L cI-40 13-am43, complete genome) position: , mismatch: 4, identity: 0.875

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggcgagccgcggct	Protospacer
*********** ******** ******** .*

5. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to MN098327 (Klebsiella phage Mulock, complete genome) position: , mismatch: 4, identity: 0.875

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggagagccgcgcct	Protospacer
*********** ********.********..*

6. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_004348 (Enterobacteria phage ST64T, complete genome) position: , mismatch: 4, identity: 0.875

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggcgagccgcggct	Protospacer
*********** ******** ******** .*

7. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to MW013503 (Salmonella virus L cII-101, complete genome) position: , mismatch: 4, identity: 0.875

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggcgagccgcggct	Protospacer
*********** ******** ******** .*

8. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_018275 (Salmonella phage vB_SemP_Emek, complete genome) position: , mismatch: 4, identity: 0.875

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggcgagccgcggct	Protospacer
*********** ******** ******** .*

9. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_042346 (Salmonella virus BTP1 genome assembly, chromosome: BTP1) position: , mismatch: 4, identity: 0.875

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggcgagccgcggct	Protospacer
*********** ******** ******** .*

10. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to AY052766 (Salmonella typhimurium bacteriophage ST64T, complete genome) position: , mismatch: 4, identity: 0.875

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggcgagccgcggct	Protospacer
*********** ******** ******** .*

11. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to MF188997 (Salmonella phage vB_SalP_PM43, complete genome) position: , mismatch: 4, identity: 0.875

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggcgagccgcggct	Protospacer
*********** ******** ******** .*

12. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
gtgccggagccgaaagacggcgagccgcggct	Protospacer
  ********* ******** ******** .*

13. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054718 (Salmonella enterica strain 85-0120 plasmid unnamed2, complete sequence) position: , mismatch: 6, identity: 0.812

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
gtgccggagccgaaagacggcgagccgcggct	Protospacer
  ********* ******** ******** .*

14. spacer 2.17|975450|32|CP025248|PILER-CR matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*   

15. spacer 2.17|975450|32|CP025248|PILER-CR matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcaccgccgatcctttcaccgccgcc	Protospacer
********* ********* ****. *.  **

16. spacer 2.17|975450|32|CP025248|PILER-CR matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*   

17. spacer 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP050083 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b3, complete sequence) position: , mismatch: 7, identity: 0.781

aaatcgtcaataaaattattggcgc--gccatcc	CRISPR spacer
ggatcgtcaatgaatttattggcgctggctat--	Protospacer
..*********.** **********  **.**  

18. spacer 2.4|975172|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042626 (Escherichia coli strain NCYU-26-73 plasmid pNCYU-26-73-11, complete sequence) position: , mismatch: 8, identity: 0.75

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
ataaacatgattttttccctctaaaaaatccc	Protospacer
  .. **** *.******************* 

19. spacer 3.1|992270|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032319 (Hymenobacter oligotrophus strain sh-6 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ccagcctg--tagcgtgggggcgttgggtagcct	CRISPR spacer
--ggtgtggccagcgtggtagcgttgggtagcct	Protospacer
  .*. **  .******* .**************

20. spacer 3.4|992453|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032703 (Pantoea dispersa strain DSM 32899 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

ataatttgctgaactacgtccgtattgagctg--	CRISPR spacer
aacgtttgctgaactttgtccgtatt--gccgac	Protospacer
*  .*********** .*********  **.*  

21. spacer 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_016907 (Gordonia polyisoprenivorans VH2 plasmid p174, complete sequence) position: , mismatch: 8, identity: 0.75

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
cggggtgatcaccgcctcgcggaaggtcttgc	Protospacer
 ******** ********** *** *.. .**

22. spacer 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP010858 (Marinovum algicola DG 898 plasmid pMaD3) position: , mismatch: 8, identity: 0.75

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
cgtggtgatcaccggctcgctgaacggcctgc	Protospacer
 * ****** **** *********** . .**

23. spacer 2.1|974989|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to MT711528 (Escherichia phage vB_EcoS_fTaEco03, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...* 

24. spacer 2.1|974989|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to MT711525 (Escherichia phage vB_EcoS_fKuEco01, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...* 

25. spacer 2.1|974989|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to GU196278 (Escherichia phage K1H, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...* 

26. spacer 2.1|974989|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_027993 (Escherichia phage K1G, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...* 

27. spacer 2.1|974989|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to MT711527 (Escherichia phage vB_EcoS_fTaEco01, complete genome) position: , mismatch: 9, identity: 0.719

ttgcgtatttcgattgtctggacatt-tcgtac	CRISPR spacer
ttgcgcatttcgatagtctggacgccgttaca-	Protospacer
*****.******** ********... *...* 

28. spacer 2.2|975050|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_011255 (Borrelia recurrentis A1 plasmid pl35, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
aaaaaatatgatttatatagaaataatttata	Protospacer
. *.****************** .***  *. 

29. spacer 2.2|975050|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_011249 (Borrelia duttonii Ly plasmid pl36, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
aaaaaatatgatttatatagaaataatttata	Protospacer
. *.****************** .***  *. 

30. spacer 2.2|975050|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032297 (Rahnella aquatilis strain ZF7 plasmid pRAZF7, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
caccaataggatttatattgaaccaataatcc	Protospacer
    **** ********* ********.* *.

31. spacer 2.2|975050|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP034837 (Rahnella aquatilis strain KM05 plasmid pKM05, complete sequence) position: , mismatch: 9, identity: 0.719

gcagaatatgatttatatagaaccaatgaact	CRISPR spacer
caccaataggatttatattgaaccaataatcc	Protospacer
    **** ********* ********.* *.

32. spacer 2.12|975690|32|CP025248|CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

33. spacer 2.17|975450|32|CP025248|PILER-CR matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcagcgccgagcagttcagcaaactg	Protospacer
**************** * *****  . .*. 

34. spacer 2.17|975450|32|CP025248|PILER-CR matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
gcggcatcagcgccgaccggttcaccgtcagg	Protospacer
 ***************.* *****. **    

35. spacer 2.17|975450|32|CP025248|PILER-CR matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatgagcgccgatcagttcgacgccctg	Protospacer
******* ********** ****.  *. *. 

36. spacer 2.21|975694|32|CP025248|PILER-CR matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

37. spacer 3.1|992270|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP023408 (Streptomyces fungicidicus strain TXX3120 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ccagcctgtagcgtgggggcgttgggtagcct	CRISPR spacer
cggccctgtagcggaggggcgttgggtcccgg	Protospacer
* . ********* .************  *  

38. spacer 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031397 (Borreliella burgdorferi strain MM1 plasmid plsm_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

39. spacer 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019854 (Borreliella burgdorferi plasmid lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

40. spacer 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019765 (Borreliella burgdorferi strain B31_NRZ isolate B31 plasmid p_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

41. spacer 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_011784 (Borreliella burgdorferi ZS7 plasmid ZS7_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

42. spacer 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP017218 (Borreliella burgdorferi strain B331 plasmid B331_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

43. spacer 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_013130 (Borreliella burgdorferi N40 plasmid N40_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

44. spacer 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_013129 (Borreliella burgdorferi JD1 plasmid JD1_lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

45. spacer 3.3|992392|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_001857 (Borreliella burgdorferi B31 plasmid lp54, complete sequence) position: , mismatch: 9, identity: 0.719

aaatcgtcaataaaattattggcgcgccatcc	CRISPR spacer
aaatcgtcgataacattattggcgaatatgac	Protospacer
********.**** ********** ..    *

46. spacer 3.5|992514|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022925 (Klebsiella pneumoniae strain ST307PT01 plasmid pJYC01B) position: , mismatch: 9, identity: 0.719

tggccggagcctaaagacggggagccgcgttt	CRISPR spacer
tggccggagccgaaagacggggaac-------	Protospacer
*********** ***********.*       

47. spacer 3.13|992941|32|CP025248|CRISPRCasFinder,CRT matches to NZ_CP050096 (Rhizobium leguminosarum bv. trifolii strain 22B plasmid pRL22b3, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **  

48. spacer 3.13|992941|32|CP025248|CRISPRCasFinder,CRT matches to NZ_CP050102 (Rhizobium leguminosarum bv. trifolii strain 9B plasmid pRL9b2, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **  

49. spacer 3.13|992941|32|CP025248|CRISPRCasFinder,CRT matches to NZ_CP050107 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b1, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **  

50. spacer 3.13|992941|32|CP025248|CRISPRCasFinder,CRT matches to NZ_CP050112 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b5, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **  

51. spacer 3.13|992941|32|CP025248|CRISPRCasFinder,CRT matches to NZ_CP048285 (Rhizobium leguminosarum bv. viciae 248 plasmid pRle248a, complete sequence) position: , mismatch: 9, identity: 0.719

ttgaata---cgtcgcgataccagtcactccggaa	CRISPR spacer
---agtgtgccgtcgcgataccagtcagtcaggcc	Protospacer
   *.*.   ***************** ** **  

52. spacer 2.4|975172|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to LR026976 (Bacillus pumilus isolate 1 genome assembly, plasmid: p576) position: , mismatch: 10, identity: 0.688

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
ctctttttgatcttttcactctaaaaaatctc	Protospacer
*   .. ** ******* ************. 

53. spacer 2.4|975172|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_022882 (Bacillus thuringiensis YBT-1518 plasmid pBMB0233, complete sequence) position: , mismatch: 10, identity: 0.688

cgggccatgttcttttccctctaaaaaatccg	CRISPR spacer
aaacacgagttcttttcgctgtaaaaaatcca	Protospacer
 ..  *. ********* ** **********.

54. spacer 2.16|975934|32|CP025248|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*  

55. spacer 3.1|992270|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP006373 (Aureimonas sp. AU20 plasmid pAU20f, complete sequence) position: , mismatch: 10, identity: 0.688

ccagcctgtagcgtgggggcgttgggtagcct	CRISPR spacer
gaacgtcttagcgtcggggcgttgggtcgcca	Protospacer
  *  .. ****** ************ *** 

56. spacer 3.2|992331|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to CP009871 (Pantoea sp. PSNIH2 plasmid pPSP-cd6, complete sequence) position: , mismatch: 10, identity: 0.688

catcttttacgcatgttgatgtgcgttcaaat	CRISPR spacer
ccgattttacgcatgttgctgcgcgttgccgg	Protospacer
*   ************** **.*****   . 

57. spacer 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_005262 (Burkholderia cepacia phage Bcep22, complete genome) position: , mismatch: 10, identity: 0.688

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
ctcggtgataacggccttgctgaacgcggtcg	Protospacer
   ********* ****.********* ..  

58. spacer 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP015746 (Shinella sp. HZN7 plasmid pShin-10, complete sequence) position: , mismatch: 10, identity: 0.688

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
cagcccttgaaccgccaggctgaacgctacgc	Protospacer
 .*  .   *******  **************

59. spacer 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019446 (Kosakonia cowanii JCM 10956 = DSM 18146 strain 888-76 plasmid p888-76-1, complete sequence) position: , mismatch: 10, identity: 0.688

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
tgatgtgataaccacatcgctgaacgccttca	Protospacer
 *. *********.* ***********. .  

60. spacer 3.6|992575|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032923 (Agrobacterium tumefaciens strain 1D1108 plasmid pAt1D1108a, complete sequence) position: , mismatch: 10, identity: 0.688

gggggtgataaccgcctcgctgaacgctacgc	CRISPR spacer
ttcaccggcaaccgcatcgctgtacgctacgc	Protospacer
   . .*..****** ****** *********

61. spacer 3.9|992758|32|CP025248|PILER-CR,CRISPRCasFinder,CRT matches to NC_019957 (Mycobacterium sp. JS623 plasmid pMYCSM01, complete sequence) position: , mismatch: 10, identity: 0.688

cattcgctcaatagcggcccgcgtggcggtga	CRISPR spacer
agcgcgctcaatagcggaccgcgcggcaacgg	Protospacer
 .. ************* *****.***...*.

62. spacer 2.17|975450|32|CP025248|PILER-CR matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

63. spacer 2.17|975450|32|CP025248|PILER-CR matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

64. spacer 3.14|993002|32|CP025248|CRISPRCasFinder,CRT matches to CP054927 (Streptomyces fulvissimus strain NA06532 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.656

aggggcgttccgcagtcggcaagggctgaaaa	CRISPR spacer
tcgggcatcccgcagtcggcaagggtgcggcg	Protospacer
  ****.*.****************.  .. .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1166356 : 1312314 153 Salmonella_phage(27.17%) lysis,portal,tRNA,integrase,capsid,terminase,holin,protease,transposase,head,tail attL 1194428:1194444|attR 1281581:1281597
DBSCAN-SWA_2 1776763 : 1785934 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_3 1860432 : 1870939 10 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_4 1948488 : 2014895 86 Salmonella_phage(86.15%) lysis,portal,plate,holin,integrase,terminase,capsid,protease,head,tail attL 1941691:1941706|attR 2017292:2017307
DBSCAN-SWA_5 2473036 : 2489761 22 Salmonella_phage(37.5%) tail,plate,integrase,terminase attL 2472791:2472805|attR 2489331:2489345
DBSCAN-SWA_6 2954773 : 3039528 94 Salmonella_phage(45.45%) lysis,portal,tRNA,holin,integrase,protease,tail attL 2978885:2978904|attR 3050677:3050696
DBSCAN-SWA_7 3104086 : 3111399 8 Ralstonia_phage(16.67%) protease,integrase attL 3098694:3098708|attR 3110135:3110149
DBSCAN-SWA_8 3346112 : 3412263 72 Shigella_phage(51.02%) plate,tRNA,transposase,protease,head,tail NA
DBSCAN-SWA_9 4503850 : 4548625 47 Burkholderia_phage(36.36%) tail,plate,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage