CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP025234	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1926 chromosome, complete genome	2 crisprs	WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas3,cas14j,DEDDh,DinG,c2c9_V-U4	28	9
CP025235	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1926 plasmid pSNE1-1926, complete sequence	0 crisprs	NA	0	0
CP025236	Salmonella enterica subsp. enterica serovar Newport str. USDA-ARS-USMARC-1926 plasmid pSNE2-1926, complete sequence	0 crisprs	DEDDh	0	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025234_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025234_1

976104-977290

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
NGTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

19 spacers

cas8e,cse2gr11

The CRISPR arrays of CP025234_1

>merge|CP025234|1|976104-977290|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGCGGCAAAAGAACTCGCTAAATGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTGCGGCAGCGCGCAATCGAGACACGCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGCACAAAACGCCAGTGGCATGGTACAACCCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTGACCATGTTTAACTCTAAATCAGGCCGTGTGTTCCCAGCGCCAGCGGGGATAAACCGTCATGCTTTCGACTAAATACTACCGCGACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATAACAACATTATCAGTGTGAAAAGTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATATGAAAAACGTAAAAATTTACACCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATAGGACAGCCATTCGAGCGCCCAGAGTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCAGTATGCACTGCTTGATAAAGTCAGGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTAACGTCTATAGCTAAATGTAGAGAAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTTTGGAGTCAATGTTATTTCTTCAGGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTCGCTGGTTGCTCCAACTCCTGATATGCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAAAATCTTCTTTCATATAACCGTAAGGGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGTTTTGTCACCTCAACGGTCGGGAGTGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCAACAGTTTCTTACCGCAAGCAGTTTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCATCGGGATTCATTTTGTTGTCCGGGTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTGCTCTATGTCTAAAAATAAAAGCGGTTCGTGTTCCCTGCGCCAGCGGGGATAAACCCAGCACAATCATTATTAGATGAACTTTCATCAAGTGTTCCCCGCGCAGCGGGGATAAACCGGGGATCGCGCTGGCGGTCGCATCCGTTGCCGTGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP025234|1|1|976104-977290|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCA
AGTGTTCCCCGCGCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP025234|1|1|976104-977289|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCA
AGTGTTCCCCGCGCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCG
TGTGTTCCCCGCGCCAACAAGGATAGCCG

>CP025234|1|1|976226-977229|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCAA
GTGTTCCCCGCGCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP025234.1\|QAZ12723.1\|980857_982570_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP025234.1\|QAZ12727.1\|989538_990141_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP025234.1\|QAZ12718.1\|973701_975000_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP025234.1\|QAZ12721.1\|978272_978635_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP025234.1\|QAZ16371.1\|978563_978734_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP025234.1\|QAZ12719.1\|975135_975807_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP025234.1\|QAZ12713.1\|966192_966966_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177
CP025234.1\|QAZ12717.1\|971981_973619_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP025234.1\|QAZ12711.1\|965181_965652_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP025234.1\|QAZ12714.1\|966978_969678_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176
CP025234.1\|QAZ12722.1\|979058_980858_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP025234.1\|QAZ12712.1\|965666_966173_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP025234.1\|QAZ16372.1\|983592_984546_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP025234.1\|QAZ12720.1\|977387_978185_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP025234.1\|QAZ12715.1\|969757_970345_-\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP025234.1\|QAZ12725.1\|983268_983511_-\|hypothetical-protein	unknown	unknown	unknown
CP025234.1\|QAZ12726.1\|987986_989522_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP025234.1\|QAZ12710.1\|964648_965185_-\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168
CP025234.1\|QAZ12716.1\|970953_971754_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP025234.1\|QAZ12724.1\|982645_983380_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
CP025234.1\|QAZ12723.1\|980857_982570_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP025234.1\|QAZ12727.1\|989538_990141_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37
CP025234.1\|QAZ12718.1\|973701_975000_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP025234.1\|QAZ12721.1\|978272_978635_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP025234.1\|QAZ12719.1\|975135_975807_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP025234.1\|QAZ12713.1\|966192_966966_-\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
CP025234.1\|QAZ12717.1\|971981_973619_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP025234.1\|QAZ12711.1\|965181_965652_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
CP025234.1\|QAZ12714.1\|966978_969678_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0
CP025234.1\|QAZ12722.1\|979058_980858_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP025234.1\|QAZ12712.1\|965666_966173_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
CP025234.1\|QAZ16372.1\|983592_984546_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025234.1\|QAZ12720.1\|977387_978185_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
CP025234.1\|QAZ12715.1\|969757_970345_-\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP025234.1\|QAZ12726.1\|987986_989522_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP025234.1\|QAZ12710.1\|964648_965185_-\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.00241e-120
CP025234.1\|QAZ12716.1\|970953_971754_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
CP025234.1\|QAZ12724.1\|982645_983380_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138

>CP025234.1|QAZ12719.1|975135_975807_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP025234.1|QAZ12718.1|973701_975000_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP025234.1|QAZ12717.1|971981_973619_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRNEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDAQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP025234.1|QAZ12716.1|970953_971754_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP025234.1|QAZ12715.1|969757_970345_-|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP025234.1|QAZ12714.1|966978_969678_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESSYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>CP025234.1|QAZ12713.1|966192_966966_-|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP025234.1|QAZ12712.1|965666_966173_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP025234.1|QAZ12711.1|965181_965652_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP025234.1|QAZ12710.1|964648_965185_-|fimbrial-protein-SteF
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFKLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>CP025234.1|QAZ12720.1|977387_978185_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP025234.1|QAZ12721.1|978272_978635_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP025234.1|QAZ16371.1|978563_978734_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP025234.1|QAZ12722.1|979058_980858_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP025234.1|QAZ12723.1|980857_982570_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP025234.1|QAZ12724.1|982645_983380_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP025234.1|QAZ12725.1|983268_983511_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYDQFKIRLPAGFFIAASIIIPRKDNHPSCSPHSRFSPKNRVSSSAMPGSHLRVVCISPTDR
>CP025234.1|QAZ16372.1|983592_984546_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP025234.1|QAZ12726.1|987986_989522_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>CP025234.1|QAZ12727.1|989538_990141_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK

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Crispr_ID: CP025234_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025234_2

993959-995573

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

26 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of CP025234_2

>merge|CP025234|2|993959-995573|PILER-CR,CRISPRCasFinder,CRT,PILER-CR,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGAACGGCAGTATTTAAAAGGGGTTATTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGGCGCCCGGATTGTTTGCGTGCGGCGACGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATTTACCCGCCACTTATTCCCCATTGCATGTGTTCCCCGCGCCAGCGGGGATAAATCGGGACTATCAAACCATCTATGATGCCAATTTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGGGGCTGGTATTCGATACAGACCCGGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAATAAAAATGAATTTGAGTCAACTCTATAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTAGGCTGCGGTTGGGCACCGAAGAAAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATTATCCCGGAAATCGTGATCAACTACGCAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATTGTTATTGCGGTAACGGATAATTTATCATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGGCGATCGCATTTGGGTGCGGGAAACATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAATATGGTGATAATGTTGCACCTTCGCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTCGGCCTGTTTTTTGATTTTGACAATCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAATAACCGACGAGGGCAAACGCCGTGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGACTGAGGGAATAGGGACCGTAATTGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACAATGTTGCGTCTAATTCTCATTAATTAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACGAAAATCAGCCCGCATATTCCGACACAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGTGGTTTTAGGTTGTCGGTGCTGATCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGATTAAACAACAGGATTTTGCAATTACTGTTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACGGCAGCAGCGTGAAACACGTCAGTATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAGCTGTTCCATACTCACCCCCTGTGCAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATGTATGCCGCGACGATCGAGAGCGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCAGATGAAAAATATTTACAGATTGGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAACTATCTCTATCGCAGGCTGGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAAAGGTACTCCCATATCTCCAGCCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>CP025234|2|2|993959-994719|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGC	GGGGCTGGTATTCGATACAGACCCGGCTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGGGA	ATAAAAATGAATTTGAGTCAACTCTATAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGT	TAGGCTGCGGTTGGGCACCGAAGAAAAAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	ATCCCGGAAATCGTGATCAACTACGCAGGGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	GTTATTGCGGTAACGGATAATTTATCATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCT	GGCGATCGCATTTGGGTGCGGGAAACATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCG	AATATGGTGATAATGTTGCACCTTCGCTCGTG
TTCCCCGCGCCAGCGGGGATAAACCGGAC	TCGGCCTGTTTTTTGATTTTGACAATCAGGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCAATAACCGACGAGGGCAAACGCCGTGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGACTGAGGGAATAGGGACCGTAATTGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAACTATCTCTATCGCAGGCTGGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAAAGGTACTCCCATATCTCCAGCCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC


>CP025234|2|2|993959-995573|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTTATTGCGGTAACGGATAATTTATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGGCGATCGCATTTGGGTGCGGGAAACATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGACTGAGGGAATAGGGACCGTAATTGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>CP025234|2|2|993959-995573|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTTATTGCGGTAACGGATAATTTATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGGCGATCGCATTTGGGTGCGGGAAACATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGACTGAGGGAATAGGGACCGTAATTGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>CP025234|2|3|994813-995573|PILER-CR
	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGC	GGGGCTGGTATTCGATACAGACCCGGCTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGGGA	ATAAAAATGAATTTGAGTCAACTCTATAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGT	TAGGCTGCGGTTGGGCACCGAAGAAAAAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	ATCCCGGAAATCGTGATCAACTACGCAGGGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	GTTATTGCGGTAACGGATAATTTATCATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCT	GGCGATCGCATTTGGGTGCGGGAAACATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCG	AATATGGTGATAATGTTGCACCTTCGCTCGTG
TTCCCCGCGCCAGCGGGGATAAACCGGAC	TCGGCCTGTTTTTTGATTTTGACAATCAGGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCAATAACCGACGAGGGCAAACGCCGTGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGACTGAGGGAATAGGGACCGTAATTGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAACTATCTCTATCGCAGGCTGGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAAAGGTACTCCCATATCTCCAGCCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>CP025234|2|4|995301-995573|PILER-CR
	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGC	GGGGCTGGTATTCGATACAGACCCGGCTAGTG
TTCCCCGCGCCAGCGGGGATAAACCGGGA	ATAAAAATGAATTTGAGTCAACTCTATAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCGT	TAGGCTGCGGTTGGGCACCGAAGAAAAAAGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	ATCCCGGAAATCGTGATCAACTACGCAGGGTG
TTCCCCGCGCCAGCGGGGATAAACCGATT	GTTATTGCGGTAACGGATAATTTATCATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCT	GGCGATCGCATTTGGGTGCGGGAAACATTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCG	AATATGGTGATAATGTTGCACCTTCGCTCGTG
TTCCCCGCGCCAGCGGGGATAAACCGGAC	TCGGCCTGTTTTTTGATTTTGACAATCAGGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCAATAACCGACGAGGGCAAACGCCGTGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGACTGAGGGAATAGGGACCGTAATTGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAACTATCTCTATCGCAGGCTGGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAAAGGTACTCCCATATCTCCAGCCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP025234.1\|QAZ12734.1\|996884_997793_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP025234.1\|QAZ16372.1\|983592_984546_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP025234.1\|QAZ12728.1\|990157_991222_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP025234.1\|QAZ12741.1\|1001914_1002964_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP025234.1\|QAZ12735.1\|997802_999242_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP025234.1\|QAZ12733.1\|995587_996634_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP025234.1\|QAZ12736.1\|999228_999834_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP025234.1\|QAZ12729.1\|991231_991957_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP025234.1\|QAZ12732.1\|993580_993874_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP025234.1\|QAZ12725.1\|983268_983511_-\|hypothetical-protein	unknown	unknown	unknown
CP025234.1\|QAZ12727.1\|989538_990141_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP025234.1\|QAZ12740.1\|1001438_1001918_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP025234.1\|QAZ12738.1\|1000398_1000710_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP025234.1\|QAZ12739.1\|1000728_1001439_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP025234.1\|QAZ12730.1\|991956_992661_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
CP025234.1\|QAZ12726.1\|987986_989522_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP025234.1\|QAZ12742.1\|1002944_1003706_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP025234.1\|QAZ12737.1\|999851_1000208_+\|DUF3561-domain-containing-protein	unknown	unknown	gnl\|CDD\|371891
CP025234.1\|QAZ12731.1\|992660_993578_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP025234.1\|QAZ12724.1\|982645_983380_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997

Protein	Function_ID	Function_description	E-value
CP025234.1\|QAZ12734.1\|996884_997793_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP025234.1\|QAZ16372.1\|983592_984546_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025234.1\|QAZ12728.1\|990157_991222_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.25497e-121
CP025234.1\|QAZ12741.1\|1001914_1002964_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP025234.1\|QAZ12735.1\|997802_999242_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP025234.1\|QAZ12733.1\|995587_996634_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP025234.1\|QAZ12736.1\|999228_999834_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP025234.1\|QAZ12729.1\|991231_991957_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.58885e-47
CP025234.1\|QAZ12732.1\|993580_993874_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.50902e-63
CP025234.1\|QAZ12727.1\|989538_990141_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37
CP025234.1\|QAZ12740.1\|1001438_1001918_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP025234.1\|QAZ12738.1\|1000398_1000710_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP025234.1\|QAZ12739.1\|1000728_1001439_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.96864e-119
CP025234.1\|QAZ12730.1\|991956_992661_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	7.8492e-90
CP025234.1\|QAZ12726.1\|987986_989522_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP025234.1\|QAZ12742.1\|1002944_1003706_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP025234.1\|QAZ12737.1\|999851_1000208_+\|DUF3561-domain-containing-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP025234.1\|QAZ12731.1\|992660_993578_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.73134e-156
CP025234.1\|QAZ12724.1\|982645_983380_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138

>CP025234.1|QAZ12732.1|993580_993874_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLVVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>CP025234.1|QAZ12731.1|992660_993578_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVWATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVALGDSGHRST
>CP025234.1|QAZ12730.1|991956_992661_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHTLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>CP025234.1|QAZ12729.1|991231_991957_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNQHYHLAVHALASQDRWLRDYHTVGAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>CP025234.1|QAZ12728.1|990157_991222_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>CP025234.1|QAZ12727.1|989538_990141_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK
>CP025234.1|QAZ12726.1|987986_989522_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>CP025234.1|QAZ16372.1|983592_984546_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP025234.1|QAZ12725.1|983268_983511_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYDQFKIRLPAGFFIAASIIIPRKDNHPSCSPHSRFSPKNRVSSSAMPGSHLRVVCISPTDR
>CP025234.1|QAZ12724.1|982645_983380_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP025234.1|QAZ12733.1|995587_996634_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP025234.1|QAZ12734.1|996884_997793_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP025234.1|QAZ12735.1|997802_999242_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP025234.1|QAZ12736.1|999228_999834_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP025234.1|QAZ12737.1|999851_1000208_+|DUF3561-domain-containing-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP025234.1|QAZ12738.1|1000398_1000710_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP025234.1|QAZ12739.1|1000728_1001439_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLADHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP025234.1|QAZ12740.1|1001438_1001918_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP025234.1|QAZ12741.1|1001914_1002964_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALHWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP025234.1|QAZ12742.1|1002944_1003706_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025234_2	2.35\|995513\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	995513-995544	32	NC_004313	Salmonella phage ST64B, complete genome	31961-31992	1	0.969
CP025234_2	2.35\|995513\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	995513-995544	32	KU927493	Salmonella phage 118970_sal3, complete genome	69573-69604	1	0.969
CP025234_2	2.35\|995513\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	995513-995544	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	31961-31992	1	0.969
CP025234_1	1.20\|977230\|31\|CP025234\|CRT	977230-977260	31	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90793-90823	4	0.871
CP025234_1	1.20\|977230\|31\|CP025234\|CRT	977230-977260	31	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112082	4	0.871
CP025234_1	1.20\|977230\|31\|CP025234\|CRT	977230-977260	31	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225001	4	0.871
CP025234_1	1.19\|977230\|32\|CP025234\|CRISPRCasFinder	977230-977261	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
CP025234_1	1.19\|977230\|32\|CP025234\|CRISPRCasFinder	977230-977261	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
CP025234_1	1.19\|977230\|32\|CP025234\|CRISPRCasFinder	977230-977261	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
CP025234_1	1.20\|977230\|31\|CP025234\|CRT	977230-977260	31	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271401-271431	5	0.839
CP025234_2	2.10\|994540\|32\|CP025234\|PILER-CR	994540-994571	32	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10362	5	0.844
CP025234_2	2.19\|994537\|32\|CP025234\|CRISPRCasFinder,CRT	994537-994568	32	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10362	5	0.844
CP025234_1	1.13\|976865\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976865-976896	32	MK448383	Streptococcus satellite phage Javan248, complete genome	4976-5007	6	0.812
CP025234_1	1.18\|977170\|31\|CP025234\|CRISPRCasFinder,CRT	977170-977200	31	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33598	6	0.806
CP025234_1	1.19\|977230\|32\|CP025234\|CRISPRCasFinder	977230-977261	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
CP025234_2	2.6\|994296\|32\|CP025234\|PILER-CR	994296-994327	32	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30992	6	0.812
CP025234_2	2.10\|994540\|32\|CP025234\|PILER-CR	994540-994571	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5482	6	0.812
CP025234_2	2.15\|994293\|32\|CP025234\|CRISPRCasFinder,CRT	994293-994324	32	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30992	6	0.812
CP025234_2	2.19\|994537\|32\|CP025234\|CRISPRCasFinder,CRT	994537-994568	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5482	6	0.812
CP025234_1	1.2\|976194\|32\|CP025234\|CRISPRCasFinder,CRT	976194-976225	32	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	51303-51334	7	0.781
CP025234_1	1.15\|976987\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976987-977018	32	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	126588-126619	7	0.781
CP025234_1	1.15\|976987\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976987-977018	32	NZ_CP010602	Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence	115384-115415	7	0.781
CP025234_1	1.15\|976987\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976987-977018	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	133543-133574	7	0.781
CP025234_1	1.15\|976987\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976987-977018	32	NZ_CP010708	Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence	115381-115412	7	0.781
CP025234_1	1.15\|976987\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976987-977018	32	NZ_CP010737	Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence	183735-183766	7	0.781
CP025234_1	1.19\|977230\|32\|CP025234\|CRISPRCasFinder	977230-977261	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
CP025234_1	1.19\|977230\|32\|CP025234\|CRISPRCasFinder	977230-977261	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
CP025234_1	1.20\|977230\|31\|CP025234\|CRT	977230-977260	31	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052296-2052326	7	0.774
CP025234_1	1.20\|977230\|31\|CP025234\|CRT	977230-977260	31	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343728-343758	7	0.774
CP025234_1	1.21\|977170\|32\|CP025234\|PILER-CR	977170-977201	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	4747-4778	7	0.781
CP025234_1	1.21\|977170\|32\|CP025234\|PILER-CR	977170-977201	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	389262-389293	7	0.781
CP025234_1	1.21\|977170\|32\|CP025234\|PILER-CR	977170-977201	32	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33599	7	0.781
CP025234_2	2.6\|994296\|32\|CP025234\|PILER-CR	994296-994327	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294661	7	0.781
CP025234_2	2.15\|994293\|32\|CP025234\|CRISPRCasFinder,CRT	994293-994324	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294661	7	0.781
CP025234_2	2.30\|995208\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	995208-995239	32	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304164-304195	7	0.781
CP025234_2	2.30\|995208\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	995208-995239	32	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194537	7	0.781
CP025234_1	1.8\|976560\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976560-976591	32	CP047389	Agrobacterium sp. CGMCC 11546 plasmid pA	272606-272637	8	0.75
CP025234_1	1.15\|976987\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976987-977018	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	276525-276556	8	0.75
CP025234_1	1.15\|976987\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976987-977018	32	AY639599	Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds	1396-1427	8	0.75
CP025234_1	1.16\|977048\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	977048-977079	32	NC_019364	Sulfitobacter guttiformis plasmid pSD118, complete sequence	10703-10734	8	0.75
CP025234_1	1.19\|977230\|32\|CP025234\|CRISPRCasFinder	977230-977261	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
CP025234_1	1.20\|977230\|31\|CP025234\|CRT	977230-977260	31	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654432	8	0.742
CP025234_2	2.30\|995208\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	995208-995239	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756038-1756069	8	0.75
CP025234_2	2.30\|995208\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	995208-995239	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879041	8	0.75
CP025234_1	1.10\|976682\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976682-976713	32	MN693011	Marine virus AFVG_117M58, complete genome	34901-34932	9	0.719
CP025234_1	1.13\|976865\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976865-976896	32	MK250029	Prevotella phage Lak-C1, complete genome	220147-220178	9	0.719
CP025234_1	1.13\|976865\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976865-976896	32	MK250016	Prevotella phage Lak-A1, complete genome	256365-256396	9	0.719
CP025234_1	1.13\|976865\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976865-976896	32	MK250019	Prevotella phage Lak-A2, complete genome	177499-177530	9	0.719
CP025234_1	1.18\|977170\|31\|CP025234\|CRISPRCasFinder,CRT	977170-977200	31	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72061	9	0.71
CP025234_1	1.18\|977170\|31\|CP025234\|CRISPRCasFinder,CRT	977170-977200	31	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3414-3444	9	0.71
CP025234_1	1.18\|977170\|31\|CP025234\|CRISPRCasFinder,CRT	977170-977200	31	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232723-232753	9	0.71
CP025234_1	1.18\|977170\|31\|CP025234\|CRISPRCasFinder,CRT	977170-977200	31	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129920	9	0.71
CP025234_1	1.18\|977170\|31\|CP025234\|CRISPRCasFinder,CRT	977170-977200	31	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109942-109972	9	0.71
CP025234_1	1.18\|977170\|31\|CP025234\|CRISPRCasFinder,CRT	977170-977200	31	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148698-148728	9	0.71
CP025234_1	1.18\|977170\|31\|CP025234\|CRISPRCasFinder,CRT	977170-977200	31	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3414-3444	9	0.71
CP025234_2	2.1\|993988\|32\|CP025234\|PILER-CR,CRISPRCasFinder,CRT	993988-994019	32	NZ_CP047227	Moraxella osloensis strain YV1 plasmid p1, complete sequence	115808-115839	9	0.719
CP025234_2	2.2\|994049\|32\|CP025234\|PILER-CR,CRISPRCasFinder,CRT	994049-994080	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	616323-616354	9	0.719
CP025234_2	2.2\|994049\|32\|CP025234\|PILER-CR,CRISPRCasFinder,CRT	994049-994080	32	NC_024369	Vibrio phage X29, complete genome	16391-16422	9	0.719
CP025234_2	2.2\|994049\|32\|CP025234\|PILER-CR,CRISPRCasFinder,CRT	994049-994080	32	MK575466	Vibrio phage Rostov 7, complete genome	37606-37637	9	0.719
CP025234_2	2.2\|994049\|32\|CP025234\|PILER-CR,CRISPRCasFinder,CRT	994049-994080	32	KJ545483	Vibrio phage phi 2, complete genome	16391-16422	9	0.719
CP025234_2	2.6\|994296\|32\|CP025234\|PILER-CR	994296-994327	32	MN693555	Marine virus AFVG_25M96, complete genome	8842-8873	9	0.719
CP025234_2	2.6\|994296\|32\|CP025234\|PILER-CR	994296-994327	32	MN693550	Marine virus AFVG_25M93, complete genome	10730-10761	9	0.719
CP025234_2	2.6\|994296\|32\|CP025234\|PILER-CR	994296-994327	32	MN693245	Marine virus AFVG_25M69, complete genome	11115-11146	9	0.719
CP025234_2	2.6\|994296\|32\|CP025234\|PILER-CR	994296-994327	32	MN693208	Marine virus AFVG_25M383, complete genome	25882-25913	9	0.719
CP025234_2	2.6\|994296\|32\|CP025234\|PILER-CR	994296-994327	32	MN693436	Marine virus AFVG_25M57, complete genome	28024-28055	9	0.719
CP025234_2	2.6\|994296\|32\|CP025234\|PILER-CR	994296-994327	32	MN693515	Marine virus AFVG_25M70, complete genome	10467-10498	9	0.719
CP025234_2	2.6\|994296\|32\|CP025234\|PILER-CR	994296-994327	32	MN693320	Marine virus AFVG_25M58, complete genome	28018-28049	9	0.719
CP025234_2	2.6\|994296\|32\|CP025234\|PILER-CR	994296-994327	32	MN693286	Marine virus AFVG_25M92, complete genome	9636-9667	9	0.719
CP025234_2	2.6\|994296\|32\|CP025234\|PILER-CR	994296-994327	32	MN693549	Marine virus AFVG_25M89, complete genome	11533-11564	9	0.719
CP025234_2	2.12\|994662\|32\|CP025234\|PILER-CR	994662-994693	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	213856-213887	9	0.719
CP025234_2	2.15\|994293\|32\|CP025234\|CRISPRCasFinder,CRT	994293-994324	32	MN693555	Marine virus AFVG_25M96, complete genome	8842-8873	9	0.719
CP025234_2	2.15\|994293\|32\|CP025234\|CRISPRCasFinder,CRT	994293-994324	32	MN693550	Marine virus AFVG_25M93, complete genome	10730-10761	9	0.719
CP025234_2	2.15\|994293\|32\|CP025234\|CRISPRCasFinder,CRT	994293-994324	32	MN693245	Marine virus AFVG_25M69, complete genome	11115-11146	9	0.719
CP025234_2	2.15\|994293\|32\|CP025234\|CRISPRCasFinder,CRT	994293-994324	32	MN693208	Marine virus AFVG_25M383, complete genome	25882-25913	9	0.719
CP025234_2	2.15\|994293\|32\|CP025234\|CRISPRCasFinder,CRT	994293-994324	32	MN693436	Marine virus AFVG_25M57, complete genome	28024-28055	9	0.719
CP025234_2	2.15\|994293\|32\|CP025234\|CRISPRCasFinder,CRT	994293-994324	32	MN693515	Marine virus AFVG_25M70, complete genome	10467-10498	9	0.719
CP025234_2	2.15\|994293\|32\|CP025234\|CRISPRCasFinder,CRT	994293-994324	32	MN693320	Marine virus AFVG_25M58, complete genome	28018-28049	9	0.719
CP025234_2	2.15\|994293\|32\|CP025234\|CRISPRCasFinder,CRT	994293-994324	32	MN693286	Marine virus AFVG_25M92, complete genome	9636-9667	9	0.719
CP025234_2	2.15\|994293\|32\|CP025234\|CRISPRCasFinder,CRT	994293-994324	32	MN693549	Marine virus AFVG_25M89, complete genome	11533-11564	9	0.719
CP025234_2	2.21\|994659\|32\|CP025234\|CRISPRCasFinder,CRT	994659-994690	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	213856-213887	9	0.719
CP025234_2	2.35\|995513\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	995513-995544	32	NZ_CP015221	Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence	111308-111339	9	0.719
CP025234_1	1.6\|976438\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976438-976469	32	MG945729	UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome	1763-1794	10	0.688
CP025234_1	1.9\|976621\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976621-976652	32	MK449008	Streptococcus phage Javan84, complete genome	18935-18966	10	0.688
CP025234_1	1.9\|976621\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	976621-976652	32	MK448832	Streptococcus phage Javan85, complete genome	18935-18966	10	0.688
CP025234_1	1.16\|977048\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	977048-977079	32	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	62931-62962	10	0.688
CP025234_1	1.17\|977109\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	977109-977140	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	129540-129571	10	0.688
CP025234_1	1.17\|977109\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	977109-977140	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	111984-112015	10	0.688
CP025234_1	1.17\|977109\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	977109-977140	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	46996-47027	10	0.688
CP025234_1	1.17\|977109\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	977109-977140	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	1850-1881	10	0.688
CP025234_1	1.18\|977170\|31\|CP025234\|CRISPRCasFinder,CRT	977170-977200	31	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78356-78386	10	0.677
CP025234_1	1.21\|977170\|32\|CP025234\|PILER-CR	977170-977201	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78355-78386	10	0.688
CP025234_1	1.21\|977170\|32\|CP025234\|PILER-CR	977170-977201	32	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72062	10	0.688
CP025234_1	1.21\|977170\|32\|CP025234\|PILER-CR	977170-977201	32	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3413-3444	10	0.688
CP025234_1	1.21\|977170\|32\|CP025234\|PILER-CR	977170-977201	32	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232722-232753	10	0.688
CP025234_1	1.21\|977170\|32\|CP025234\|PILER-CR	977170-977201	32	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129921	10	0.688
CP025234_1	1.21\|977170\|32\|CP025234\|PILER-CR	977170-977201	32	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109941-109972	10	0.688
CP025234_1	1.21\|977170\|32\|CP025234\|PILER-CR	977170-977201	32	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148697-148728	10	0.688
CP025234_1	1.21\|977170\|32\|CP025234\|PILER-CR	977170-977201	32	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3413-3444	10	0.688
CP025234_2	2.5\|994235\|32\|CP025234\|PILER-CR	994235-994266	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888441	10	0.688
CP025234_2	2.5\|994235\|32\|CP025234\|PILER-CR	994235-994266	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888439	10	0.688
CP025234_2	2.11\|994601\|32\|CP025234\|PILER-CR	994601-994632	32	MK047641	Phage NV21, complete genome	23610-23641	10	0.688
CP025234_2	2.14\|994232\|32\|CP025234\|CRISPRCasFinder,CRT	994232-994263	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888441	10	0.688
CP025234_2	2.14\|994232\|32\|CP025234\|CRISPRCasFinder,CRT	994232-994263	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888439	10	0.688
CP025234_2	2.20\|994598\|32\|CP025234\|CRISPRCasFinder,CRT	994598-994629	32	MK047641	Phage NV21, complete genome	23610-23641	10	0.688
CP025234_2	2.22\|994720\|32\|CP025234\|CRISPRCasFinder,CRT	994720-994751	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	191710-191741	10	0.688
CP025234_2	2.22\|994720\|32\|CP025234\|CRISPRCasFinder,CRT	994720-994751	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	237223-237254	10	0.688
CP025234_2	2.30\|995208\|32\|CP025234\|CRISPRCasFinder,CRT,PILER-CR	995208-995239	32	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	91874-91905	10	0.688

1. spacer 2.35|995513|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

2. spacer 2.35|995513|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

3. spacer 2.35|995513|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

4. spacer 1.20|977230|31|CP025234|CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

5. spacer 1.20|977230|31|CP025234|CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

6. spacer 1.20|977230|31|CP025234|CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

7. spacer 1.19|977230|32|CP025234|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

8. spacer 1.19|977230|32|CP025234|CRISPRCasFinder matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

9. spacer 1.19|977230|32|CP025234|CRISPRCasFinder matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

10. spacer 1.20|977230|31|CP025234|CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 5, identity: 0.839

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgc	Protospacer
 .**************.* ****** *****

11. spacer 2.10|994540|32|CP025234|PILER-CR matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 5, identity: 0.844

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
ccaggcgatcgcatctgggtgcgggaggcctt	Protospacer
** ***********.***********..* **

12. spacer 2.19|994537|32|CP025234|CRISPRCasFinder,CRT matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 5, identity: 0.844

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
ccaggcgatcgcatctgggtgcgggaggcctt	Protospacer
** ***********.***********..* **

13. spacer 1.13|976865|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 6, identity: 0.812

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
tgaaaatcttctttcatagaaacgtatgtatt	Protospacer
*.**************** ** **** * .**

14. spacer 1.18|977170|31|CP025234|CRISPRCasFinder,CRT matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.806

agcacaatcattattagatgaactt--tcatca	CRISPR spacer
aacacaagaattattagatgaacttggtgat--	Protospacer
*.*****  ****************  * **

15. spacer 1.19|977230|32|CP025234|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgca	Protospacer
 .**************.* ****** *****.

16. spacer 2.6|994296|32|CP025234|PILER-CR matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 6, identity: 0.812

ggaataaaaatgaatttgagtcaact-ctataa	CRISPR spacer
ataataaaaaagtatttgagtcaactgatata-	Protospacer
. ******** * *************  ****

17. spacer 2.10|994540|32|CP025234|PILER-CR matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 6, identity: 0.812

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
gtcggcgatcgcatctgggtgcgtgaaacatg	Protospacer
 ..***********.******** *******

18. spacer 2.15|994293|32|CP025234|CRISPRCasFinder,CRT matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 6, identity: 0.812

ggaataaaaatgaatttgagtcaact-ctataa	CRISPR spacer
ataataaaaaagtatttgagtcaactgatata-	Protospacer
. ******** * *************  ****

19. spacer 2.19|994537|32|CP025234|CRISPRCasFinder,CRT matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 6, identity: 0.812

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
gtcggcgatcgcatctgggtgcgtgaaacatg	Protospacer
 ..***********.******** *******

20. spacer 1.2|976194|32|CP025234|CRISPRCasFinder,CRT matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 7, identity: 0.781

cagtgcggcagcgcgcaatcgagacacgccat	CRISPR spacer
cggtgcgacagcgagcaatcgagacgggctct	Protospacer
*.*****.***** ***********. **. *

21. spacer 1.15|976987|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccgaaagcagataaaa	Protospacer
  ******* ********* ****** * .**

22. spacer 1.15|976987|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010602 (Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

23. spacer 1.15|976987|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

24. spacer 1.15|976987|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010708 (Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

25. spacer 1.15|976987|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010737 (Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

26. spacer 1.19|977230|32|CP025234|CRISPRCasFinder matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

27. spacer 1.19|977230|32|CP025234|CRISPRCasFinder matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
 ** **************** *** *.* **.

28. spacer 1.20|977230|31|CP025234|CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.774

gggatcgcgctggcggtcgcatccgttgccg	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggccc	Protospacer
 ** ******* ************ . ***

29. spacer 1.20|977230|31|CP025234|CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.774

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagt	Protospacer
********* ********** *.**  *  *

30. spacer 1.21|977170|32|CP025234|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

31. spacer 1.21|977170|32|CP025234|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

32. spacer 1.21|977170|32|CP025234|PILER-CR matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

agcacaatcattattagatgaactt--tcatcaa	CRISPR spacer
aacacaagaattattagatgaacttggtgatg--	Protospacer
*.*****  ****************  * **

33. spacer 2.6|994296|32|CP025234|PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.781

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
tgtataaaaatgaatttgaggtaactccctac	Protospacer
 * ***************** .*****. **

34. spacer 2.15|994293|32|CP025234|CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.781

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
tgtataaaaatgaatttgaggtaactccctac	Protospacer
 * ***************** .*****. **

35. spacer 2.30|995208|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.781

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gcgatgtatgccgcgacgattgaatccacgct	Protospacer
********************.**.  *. .**

36. spacer 2.30|995208|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.781

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
accattcatgccgcgacgaacaagagcgaaca	Protospacer
.* ** .************ *.*********

37. spacer 1.8|976560|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 8, identity: 0.75

caataggacagccattcgagcgcccagagttt	CRISPR spacer
tcacaggacagctattcgagcgcccagtccgt	Protospacer
. *.********.**************  . *

38. spacer 1.15|976987|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
ttgcaacagtttctttccgcatgcagctgctt	Protospacer
 ************** ***** ****.*

39. spacer 1.15|976987|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to AY639599 (Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
gttattcagtttctgaccgccagcagtttgtt	Protospacer
**    ******** ***** *********

40. spacer 1.16|977048|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 8, identity: 0.75

atcatcgggattcattttgttgt--ccgggtggc	CRISPR spacer
gtcatcgtgatgcattttgttgtcccctaatg--	Protospacer
.****** *** ***********  ** ..**

41. spacer 1.19|977230|32|CP025234|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

gggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
 ** ******* ************ . ***

42. spacer 1.20|977230|31|CP025234|CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 8, identity: 0.742

gggatcgcgctggcggtcgcatccgttgccg	CRISPR spacer
cggctcgcgctggcggtcgcttcctcggcgc	Protospacer
 ** **************** *** . **

43. spacer 2.30|995208|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gaaccttatgccacgacgatcgagaacgaaca	Protospacer
* . . ******.************.*****

44. spacer 2.30|995208|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gaaccttatgccacgacgatcgagaacgaaca	Protospacer
* . . ******.************.*****

45. spacer 1.10|976682|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 9, identity: 0.719

aactaacgtctatagctaaatgtagagaaaac	CRISPR spacer
taaaaggttctatagctaaaagtggagaaaat	Protospacer
 *  *.  ************ **.*******.

46. spacer 1.13|976865|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

47. spacer 1.13|976865|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

48. spacer 1.13|976865|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

49. spacer 1.18|977170|31|CP025234|CRISPRCasFinder,CRT matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

50. spacer 1.18|977170|31|CP025234|CRISPRCasFinder,CRT matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

51. spacer 1.18|977170|31|CP025234|CRISPRCasFinder,CRT matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

52. spacer 1.18|977170|31|CP025234|CRISPRCasFinder,CRT matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

53. spacer 1.18|977170|31|CP025234|CRISPRCasFinder,CRT matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

54. spacer 1.18|977170|31|CP025234|CRISPRCasFinder,CRT matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

55. spacer 1.18|977170|31|CP025234|CRISPRCasFinder,CRT matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

56. spacer 2.1|993988|32|CP025234|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP047227 (Moraxella osloensis strain YV1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ctggaacggcagtatttaaaaggggttattga	CRISPR spacer
cgtaaacggcagtaattaaaagcggtttgcaa	Protospacer
*  .********** ******* ****  ..*

57. spacer 2.2|994049|32|CP025234|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
ccattggtcggattgtttgcgtgcggggccgg	Protospacer
. . .* .****************** * ***

58. spacer 2.2|994049|32|CP025234|PILER-CR,CRISPRCasFinder,CRT matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

59. spacer 2.2|994049|32|CP025234|PILER-CR,CRISPRCasFinder,CRT matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

60. spacer 2.2|994049|32|CP025234|PILER-CR,CRISPRCasFinder,CRT matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

61. spacer 2.6|994296|32|CP025234|PILER-CR matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

62. spacer 2.6|994296|32|CP025234|PILER-CR matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

63. spacer 2.6|994296|32|CP025234|PILER-CR matches to MN693245 (Marine virus AFVG_25M69, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

64. spacer 2.6|994296|32|CP025234|PILER-CR matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

65. spacer 2.6|994296|32|CP025234|PILER-CR matches to MN693436 (Marine virus AFVG_25M57, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

66. spacer 2.6|994296|32|CP025234|PILER-CR matches to MN693515 (Marine virus AFVG_25M70, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

67. spacer 2.6|994296|32|CP025234|PILER-CR matches to MN693320 (Marine virus AFVG_25M58, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

68. spacer 2.6|994296|32|CP025234|PILER-CR matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

69. spacer 2.6|994296|32|CP025234|PILER-CR matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

70. spacer 2.12|994662|32|CP025234|PILER-CR matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

gactcggcctgttttttgattttgacaatcag	CRISPR spacer
ccgtcggcctgttctttcattttgacttacac	Protospacer
   **********.*** ********   **

71. spacer 2.15|994293|32|CP025234|CRISPRCasFinder,CRT matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

72. spacer 2.15|994293|32|CP025234|CRISPRCasFinder,CRT matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

73. spacer 2.15|994293|32|CP025234|CRISPRCasFinder,CRT matches to MN693245 (Marine virus AFVG_25M69, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

74. spacer 2.15|994293|32|CP025234|CRISPRCasFinder,CRT matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

75. spacer 2.15|994293|32|CP025234|CRISPRCasFinder,CRT matches to MN693436 (Marine virus AFVG_25M57, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

76. spacer 2.15|994293|32|CP025234|CRISPRCasFinder,CRT matches to MN693515 (Marine virus AFVG_25M70, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

77. spacer 2.15|994293|32|CP025234|CRISPRCasFinder,CRT matches to MN693320 (Marine virus AFVG_25M58, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

78. spacer 2.15|994293|32|CP025234|CRISPRCasFinder,CRT matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

79. spacer 2.15|994293|32|CP025234|CRISPRCasFinder,CRT matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

80. spacer 2.21|994659|32|CP025234|CRISPRCasFinder,CRT matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

gactcggcctgttttttgattttgacaatcag	CRISPR spacer
ccgtcggcctgttctttcattttgacttacac	Protospacer
   **********.*** ********   **

81. spacer 2.35|995513|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taagttac---gccagtgcgggcgtgttgctcatc	CRISPR spacer
---actgcgcggcgagtgcgggcgcgttgctcatg	Protospacer
   ..*.*   ** **********.*********

82. spacer 1.6|976438|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to MG945729 (UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome) position: , mismatch: 10, identity: 0.688

aaaataacaacattatcagtgtgaaaagtctc	CRISPR spacer
gcaataacaaccttatcagtgtcaactttaat	Protospacer
. ********* ********** **   *  .

83. spacer 1.9|976621|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to MK449008 (Streptococcus phage Javan84, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

84. spacer 1.9|976621|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to MK448832 (Streptococcus phage Javan85, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

85. spacer 1.16|977048|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

atcatcgggattcattttgttgtccgggtggc	CRISPR spacer
attatcaggattcattttgttgtattcatcaa	Protospacer
**.***.**************** .  .* .

86. spacer 1.17|977109|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

87. spacer 1.17|977109|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

88. spacer 1.17|977109|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

89. spacer 1.17|977109|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

90. spacer 1.18|977170|31|CP025234|CRISPRCasFinder,CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.677

agcacaatcattattagatgaactttcatca	CRISPR spacer
tcttatggcattattagatgaattttcaaca	Protospacer
  .   . **************.***** **

91. spacer 1.21|977170|32|CP025234|PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
tcttatggcattattagatgaattttcaacaa	Protospacer
  .   . **************.***** ***

92. spacer 1.21|977170|32|CP025234|PILER-CR matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

93. spacer 1.21|977170|32|CP025234|PILER-CR matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

94. spacer 1.21|977170|32|CP025234|PILER-CR matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

95. spacer 1.21|977170|32|CP025234|PILER-CR matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

96. spacer 1.21|977170|32|CP025234|PILER-CR matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

97. spacer 1.21|977170|32|CP025234|PILER-CR matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

98. spacer 1.21|977170|32|CP025234|PILER-CR matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

99. spacer 2.5|994235|32|CP025234|PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

100. spacer 2.5|994235|32|CP025234|PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

101. spacer 2.11|994601|32|CP025234|PILER-CR matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 10, identity: 0.688

ccgaatatggtgataatgttgcaccttcgctc	CRISPR spacer
ctacttatggtgataatgtttcaccgtcttgg	Protospacer
*..  *************** **** ** .

102. spacer 2.14|994232|32|CP025234|CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

103. spacer 2.14|994232|32|CP025234|CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

104. spacer 2.20|994598|32|CP025234|CRISPRCasFinder,CRT matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 10, identity: 0.688

ccgaatatggtgataatgttgcaccttcgctc	CRISPR spacer
ctacttatggtgataatgtttcaccgtcttgg	Protospacer
*..  *************** **** ** .

105. spacer 2.22|994720|32|CP025234|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.688

ccaataaccgacgagggcaaacgccgtgcgcg	CRISPR spacer
atcagcgccgacgagggcacccgccgtgcggt	Protospacer
 . *  .************  *********

106. spacer 2.22|994720|32|CP025234|CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.688

ccaataaccgacgagggcaaacgccgtgcgcg	CRISPR spacer
atcagcgccgacgagggcacccgccgtgcggt	Protospacer
 . *  .************  *********

107. spacer 2.30|995208|32|CP025234|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 10, identity: 0.688

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
tttgtccatgccgcgacgatcgataccgaaaa	Protospacer
 . .* .**************** * ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1227974 : 1304732

Salmonella_phage(37.93%)

integrase,capsid,transposase,protease,head,holin,portal,terminase,tRNA,tail,lysis

attL 1220055:1220071|attR 1310579:1310595

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1220055:1220071	attL	NA	NA	NA	NA
QAZ12953.1\|1227974_1229012_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
QAZ12954.1\|1229127_1229817_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
QAZ12955.1\|1230135_1230519_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
QAZ12956.1\|1230580_1231168_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
QAZ16380.1\|1231270_1232170_+	LysR family transcriptional regulator	NA	NA	NA	NA
QAZ12957.1\|1232187_1233522_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
QAZ12958.1\|1233651_1234389_+\|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	NA	NA	NA	NA
QAZ12959.1\|1234373_1235996_-	L-aspartate oxidase	NA	NA	NA	NA
QAZ12960.1\|1236080_1236260_+	hypothetical protein	NA	NA	NA	NA
QAZ12961.1\|1236420_1236996_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
QAZ12962.1\|1237027_1237678_+	anti-sigma-E factor RseA	NA	NA	NA	NA
QAZ12963.1\|1237677_1238634_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
QAZ12964.1\|1238630_1239110_+	SoxR reducing system protein RseC	NA	NA	NA	NA
QAZ12965.1\|1239139_1239256_+	transcriptional regulator	NA	NA	NA	NA
QAZ12966.1\|1239607_1240837_+\|integrase	integrase	H6WRW7	Salmonella_phage	4.9e-233	94.1
QAZ12967.1\|1240814_1241099_-	excisionase	H6WRW8	Salmonella_phage	3.1e-42	86.2
QAZ12968.1\|1241139_1241379_-	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
QAZ12969.1\|1241421_1242579_-	enterohemolysin	S4TTE8	Salmonella_phage	3.9e-216	99.5
QAZ12970.1\|1242541_1245469_-	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.2
QAZ12971.1\|1245595_1245946_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
QAZ12972.1\|1245967_1246126_-	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
QAZ12973.1\|1246582_1247245_-	hypothetical protein	NA	NA	NA	NA
QAZ12974.1\|1247244_1247631_-	hypothetical protein	NA	NA	NA	NA
QAZ12975.1\|1247623_1248463_-	chromosome partitioning protein ParA	A0A1X9IGI7	Lactococcus_phage	1.5e-31	33.3
QAZ12976.1\|1248521_1248917_-	transcriptional regulator	K7PM35	Enterobacteria_phage	1.9e-37	61.4
QAZ12977.1\|1249016_1249259_+	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.1e-23	64.1
QAZ12978.1\|1249218_1249593_+	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
QAZ12979.1\|1249684_1250569_+	replication protein	K7PGT1	Enterobacteria_phage	1.3e-46	47.2
QAZ12980.1\|1250565_1251261_+	phage replication protein	G8C7U6	Escherichia_phage	2.1e-55	45.4
QAZ12981.1\|1251274_1251973_+	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	2.1e-63	85.7
QAZ12982.1\|1252080_1252713_+	hypothetical protein	NA	NA	NA	NA
QAZ12983.1\|1252955_1253189_+	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
QAZ12984.1\|1253305_1253554_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
QAZ12985.1\|1253588_1254191_+	hypothetical protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
QAZ12986.1\|1254190_1254397_+	hypothetical protein	S4TNP0	Salmonella_phage	1.7e-34	97.1
QAZ12987.1\|1254399_1255011_+	protein NinG	A0A0M4RU10	Salmonella_phage	1.8e-90	98.5
QAZ12988.1\|1255007_1255148_+	hypothetical protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
QAZ12989.1\|1255144_1255822_+	antiterminator	I6PDF8	Cronobacter_phage	7.7e-63	54.0
QAZ12990.1\|1255818_1256004_+	hypothetical protein	NA	NA	NA	NA
QAZ12991.1\|1256094_1256658_+	hypothetical protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
QAZ12992.1\|1257164_1257353_+	hypothetical protein	NA	NA	NA	NA
QAZ12993.1\|1257567_1258254_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
QAZ16381.1\|1258529_1258859_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
QAZ12994.1\|1258842_1259295_+	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
QAZ16382.1\|1259312_1259765_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
QAZ12995.1\|1260000_1260402_-	inhibitor of g-type lysozyme	NA	NA	NA	NA
QAZ12996.1\|1260436_1260631_+	hypothetical protein	NA	NA	NA	NA
QAZ12997.1\|1260688_1261234_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
QAZ12998.1\|1261205_1263137_+\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
QAZ12999.1\|1263120_1263324_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
QAZ13000.1\|1263320_1264901_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
QAZ13001.1\|1264890_1266387_+	scaffolding protein	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
QAZ13002.1\|1266399_1266747_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
QAZ13003.1\|1266801_1267830_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
QAZ13004.1\|1267887_1268247_+	DNA packaging protein	NA	NA	NA	NA
QAZ13005.1\|1268257_1268641_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
QAZ13006.1\|1268668_1269247_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
QAZ13007.1\|1269295_1270546_-\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	7.8e-218	100.0
QAZ13008.1\|1270534_1270936_+\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
QAZ13009.1\|1270943_1271690_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
QAZ13010.1\|1271740_1272136_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
QAZ13011.1\|1272132_1272471_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
QAZ13012.1\|1272442_1275538_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
QAZ13013.1\|1275540_1275870_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
QAZ13014.1\|1275879_1276578_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
QAZ13015.1\|1276584_1277322_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
QAZ13016.1\|1277219_1277867_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
QAZ13017.1\|1277928_1281291_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
QAZ13018.1\|1281329_1281572_+	hypothetical protein	NA	NA	NA	NA
QAZ13019.1\|1281625_1283998_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
QAZ13020.1\|1283994_1284819_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
QAZ13021.1\|1284808_1285387_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
QAZ13022.1\|1285483_1285711_-	phage virulence factor	NA	NA	NA	NA
QAZ13023.1\|1285817_1286030_+	hypothetical protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
QAZ16383.1\|1286092_1286158_+	hypothetical protein	NA	NA	NA	NA
QAZ13024.1\|1286822_1287368_-\|transposase	transposase	NA	NA	NA	NA
QAZ13025.1\|1287614_1287752_-	hypothetical protein	NA	NA	NA	NA
QAZ13026.1\|1288254_1289748_-	type III secretion system protein	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
QAZ13027.1\|1290152_1291952_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
QAZ13028.1\|1291968_1292943_+	S26 family signal peptidase	NA	NA	NA	NA
QAZ13029.1\|1293216_1293897_+	ribonuclease 3	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
QAZ13030.1\|1293893_1294799_+	GTPase Era	NA	NA	NA	NA
QAZ13031.1\|1294810_1295539_+	DNA repair protein RecO	NA	NA	NA	NA
QAZ13032.1\|1295550_1296282_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
QAZ13033.1\|1296281_1296662_+	holo-ACP synthase	NA	NA	NA	NA
QAZ13034.1\|1296773_1297034_-	ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	4.9e-18	53.5
QAZ13035.1\|1297071_1297998_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.8e-09	24.4
QAZ13036.1\|1298113_1299310_+	MFS transporter	NA	NA	NA	NA
QAZ13037.1\|1299331_1300249_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
QAZ13038.1\|1300287_1301136_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
QAZ13039.1\|1301251_1302145_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
QAZ13040.1\|1302155_1303517_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAZ13041.1\|1303520_1304156_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
QAZ13042.1\|1304180_1304732_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
1310579:1310595	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1748640 : 1757811

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ13441.1\|1748640_1749588_+	ATP-binding protein	F2Y1V5	Organic_Lake_phycodnavirus	2.8e-10	27.8
QAZ13442.1\|1749571_1750303_+	ABC transporter permease	NA	NA	NA	NA
QAZ13443.1\|1750283_1750391_-	hypothetical protein	NA	NA	NA	NA
QAZ13444.1\|1750450_1751182_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
QAZ13445.1\|1751404_1753090_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
QAZ13446.1\|1753086_1753806_+	DNA-binding response regulator	NA	NA	NA	NA
QAZ13447.1\|1753852_1754320_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
QAZ13448.1\|1754376_1754907_-	lipoprotein	NA	NA	NA	NA
QAZ13449.1\|1755078_1755537_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
QAZ13450.1\|1755777_1757811_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_3

1825902 : 1836409

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ13505.1\|1825902_1827306_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
QAZ13506.1\|1827483_1828377_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
QAZ13507.1\|1828753_1829839_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
QAZ13508.1\|1829838_1830738_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
QAZ13509.1\|1830785_1831664_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
QAZ13510.1\|1831664_1832216_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
QAZ13511.1\|1832221_1833196_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
QAZ13512.1\|1833211_1833985_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
QAZ13513.1\|1833989_1835069_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
QAZ13514.1\|1835095_1836409_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	9.1e-52	35.1

DBSCAN-SWA_4

1929541 : 1940191

Morganella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ13604.1\|1929541_1930066_-	peptidase	G9L6C4	Escherichia_phage	1.3e-36	77.7
QAZ13605.1\|1930712_1931003_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.0e-08	50.9
QAZ13606.1\|1931374_1932172_-	protein MtfA	NA	NA	NA	NA
QAZ13607.1\|1932652_1932814_+	hypothetical protein	NA	NA	NA	NA
QAZ13608.1\|1932940_1933360_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
QAZ13609.1\|1933362_1934631_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.4e-227	92.2
QAZ13610.1\|1935085_1935298_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
QAZ16405.1\|1935308_1935497_+	cold-shock protein	NA	NA	NA	NA
QAZ13611.1\|1935754_1936951_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	5.1e-110	56.1
QAZ13612.1\|1936962_1937163_-	hypothetical protein	NA	NA	NA	NA
QAZ13613.1\|1937600_1937912_+	hypothetical protein	NA	NA	NA	NA
QAZ13614.1\|1937991_1938687_+	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	28.0
QAZ13615.1\|1938760_1940191_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_5

2045229 : 2080346

Salmonella_phage(25.0%)

integrase,tail,protease

attL 2046987:2047002|attR 2062020:2062035

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ13730.1\|2045229_2046309_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	8.7e-101	52.5
2046987:2047002	attL	NA	NA	NA	NA
QAZ13731.1\|2047442_2047730_+	lytic enzyme	Q8HA86	Salmonella_phage	8.1e-38	92.7
QAZ13732.1\|2048517_2048685_-	lytic enzyme	NA	NA	NA	NA
QAZ13733.1\|2048749_2048938_-	hypothetical protein	NA	NA	NA	NA
QAZ13734.1\|2049410_2050292_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	1.4e-64	74.9
QAZ13735.1\|2050388_2050589_-	phage virulence factor	NA	NA	NA	NA
QAZ13736.1\|2050790_2050895_-\|tail	phage tail protein	NA	NA	NA	NA
QAZ13737.1\|2051157_2051283_+	arsenic transporter	NA	NA	NA	NA
QAZ13738.1\|2051411_2051678_+	hypothetical protein	NA	NA	NA	NA
QAZ13739.1\|2052430_2053045_-	disulfide bond formation protein B	NA	NA	NA	NA
QAZ13740.1\|2053054_2053213_-	hypothetical protein	NA	NA	NA	NA
QAZ13741.1\|2053345_2054260_-	protein PagO	NA	NA	NA	NA
QAZ16409.1\|2054877_2055078_+	hypothetical protein	NA	NA	NA	NA
QAZ13742.1\|2055368_2055617_+	hypothetical protein	NA	NA	NA	NA
QAZ13743.1\|2055554_2055923_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	5.4e-18	39.8
QAZ13744.1\|2057386_2057527_-	hypothetical protein	NA	NA	NA	NA
QAZ13745.1\|2057691_2057961_-	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
QAZ13746.1\|2058007_2058202_+	hypothetical protein	NA	NA	NA	NA
QAZ13747.1\|2058330_2058750_+	N-acetyltransferase	NA	NA	NA	NA
QAZ13748.1\|2061822_2062836_-	acyltransferase	NA	NA	NA	NA
2062020:2062035	attR	NA	NA	NA	NA
QAZ13749.1\|2063532_2063736_-	fimbrial protein	NA	NA	NA	NA
QAZ13750.1\|2063919_2064204_-	hypothetical protein	NA	NA	NA	NA
QAZ13751.1\|2065363_2065573_+	chemotaxis protein	NA	NA	NA	NA
QAZ13752.1\|2065800_2066277_-	hypothetical protein	NA	NA	NA	NA
QAZ13753.1\|2066592_2066988_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
QAZ13754.1\|2067671_2068394_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
QAZ13755.1\|2068678_2068843_+	hypothetical protein	NA	NA	NA	NA
QAZ13756.1\|2069066_2069717_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	2.7e-57	50.9
QAZ13757.1\|2069735_2069927_-	DUF1482 domain-containing protein	NA	NA	NA	NA
QAZ13758.1\|2070037_2070277_-	DUF1480 domain-containing protein	NA	NA	NA	NA
QAZ16410.1\|2070391_2071831_-	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA
QAZ13759.1\|2071908_2074548_-	MCE family protein	NA	NA	NA	NA
QAZ13760.1\|2074510_2075794_-	paraquat-inducible protein A	NA	NA	NA	NA
QAZ13761.1\|2075835_2076420_+	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA
QAZ13762.1\|2076517_2077204_+	RNA chaperone ProQ	NA	NA	NA	NA
QAZ13763.1\|2077223_2079272_+\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
QAZ13764.1\|2079464_2080346_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_6

2838574 : 2966810

158

Salmonella_phage(51.89%)

integrase,head,protease,holin,portal,tRNA,tail,lysis

attL 2906167:2906186|attR 2977962:2977981

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ16442.1\|2838574_2838895_-	hypothetical protein	E5G6P3	Salmonella_phage	1.2e-08	76.6
QAZ14518.1\|2839112_2839988_+	SPI-2 type III secretion system effector PipB	NA	NA	NA	NA
QAZ14519.1\|2840209_2840890_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	9.8e-82	71.0
QAZ14520.1\|2841278_2841545_+	hypothetical protein	A0A0M3ULK3	Salmonella_phage	7.3e-33	78.4
QAZ14521.1\|2841601_2842249_+	hypothetical protein	NA	NA	NA	NA
QAZ16443.1\|2842291_2842489_-	hypothetical protein	S4TTF2	Salmonella_phage	1.4e-09	97.0
QAZ14522.1\|2843114_2843507_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	8.5e-14	37.4
QAZ14523.1\|2843616_2844225_-	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	1.1e-31	44.7
QAZ14524.1\|2844287_2844473_-	hypothetical protein	NA	NA	NA	NA
QAZ14525.1\|2844721_2845240_-\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	2.0e-47	53.8
QAZ14526.1\|2845254_2846787_-\|tail	phage tail protein	S4TP62	Salmonella_phage	1.4e-128	66.2
QAZ14527.1\|2846786_2847467_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	5.5e-125	96.0
QAZ14528.1\|2847463_2848663_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	5.5e-213	96.7
QAZ14529.1\|2848663_2849017_-	hypothetical protein	A0A0M4R339	Salmonella_phage	3.0e-58	95.7
QAZ14530.1\|2849016_2849769_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	9.7e-91	69.8
QAZ14531.1\|2849887_2850343_+	hypothetical protein	NA	NA	NA	NA
QAZ14532.1\|2850426_2850759_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.7e-23	69.1
QAZ14533.1\|2850755_2851823_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	2.0e-174	91.5
QAZ14534.1\|2851825_2852128_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.2e-53	100.0
QAZ14535.1\|2852127_2852703_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.4e-97	100.0
QAZ14536.1\|2852702_2854712_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	0.0e+00	95.2
QAZ16444.1\|2854701_2854878_-	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	4.7e-12	72.9
QAZ14537.1\|2854889_2855342_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.3e-61	78.7
QAZ14538.1\|2855345_2855789_-	DUF3277 domain-containing protein	A0A2H4J619	uncultured_Caudovirales_phage	1.0e-55	74.5
QAZ14539.1\|2855801_2856947_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.2e-164	75.3
QAZ14540.1\|2856950_2857514_-	hypothetical protein	A0A0M4R331	Salmonella_phage	2.1e-82	78.7
QAZ14541.1\|2857488_2857878_-\|head,tail	head-tail adaptor	A0A0M3ULK0	Salmonella_phage	2.1e-68	98.4
QAZ14542.1\|2857864_2858419_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.4e-94	99.5
QAZ14543.1\|2858415_2858823_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.0e-70	96.3
QAZ14544.1\|2858788_2859178_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	4.0e-32	62.0
QAZ14545.1\|2859219_2860161_-	hypothetical protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	99.7
QAZ14546.1\|2860172_2860670_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
QAZ14547.1\|2860674_2861907_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	3.7e-228	99.3
QAZ16445.1\|2861910_2862450_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	4.5e-82	91.0
QAZ14548.1\|2862541_2864011_-	hypothetical protein	A0A0M4S6U1	Salmonella_phage	1.3e-280	99.2
QAZ14549.1\|2864010_2865633_-	TerL protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	99.4
QAZ14550.1\|2865635_2866265_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	1.5e-108	98.1
QAZ16446.1\|2866765_2867221_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.3e-53	76.8
QAZ14551.1\|2867538_2868078_-	lysozyme	K7PLY1	Enterobacteria_phage	4.0e-78	74.1
QAZ16447.1\|2868055_2868358_-	alpha/beta hydrolase	NA	NA	NA	NA
QAZ14552.1\|2868560_2868749_-	hypothetical protein	NA	NA	NA	NA
QAZ14553.1\|2869141_2869720_-	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	2.4e-44	52.0
QAZ14554.1\|2869716_2870010_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	2.1e-33	65.3
QAZ14555.1\|2870006_2870603_-	DUF1367 domain-containing protein	H9C173	Pectobacterium_phage	1.5e-81	73.7
QAZ14556.1\|2870671_2870863_-	hypothetical protein	NA	NA	NA	NA
QAZ14557.1\|2871046_2871385_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.7e-50	86.6
QAZ14558.1\|2871384_2871555_-	methyltransferase	I6S1S6	Salmonella_phage	6.3e-06	87.5
QAZ14559.1\|2871551_2872154_-	adenine methylase	G9L699	Escherichia_phage	1.7e-98	87.3
QAZ14560.1\|2872146_2872395_-	hypothetical protein	NA	NA	NA	NA
QAZ14561.1\|2872398_2873079_-	hypothetical protein	NA	NA	NA	NA
QAZ14562.1\|2873116_2874505_-	replicative DNA helicase	Q76H51	Enterobacteria_phage	1.2e-105	47.1
QAZ14563.1\|2874501_2875482_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	2.3e-44	80.6
QAZ14564.1\|2875484_2875709_-	hypothetical protein	H9C163	Pectobacterium_phage	1.0e-08	44.7
QAZ14565.1\|2875731_2876178_-	hypothetical protein	H9C162	Pectobacterium_phage	5.5e-25	50.4
QAZ16448.1\|2876112_2876328_+	hypothetical protein	NA	NA	NA	NA
QAZ14566.1\|2876242_2876476_-	XRE family transcriptional regulator	A0A0U2S629	Escherichia_phage	6.2e-12	48.6
QAZ14567.1\|2876574_2877039_+	transcriptional regulator	A0A0U2QW76	Escherichia_phage	2.7e-35	51.7
QAZ14568.1\|2877723_2878047_+	hypothetical protein	NA	NA	NA	NA
QAZ14569.1\|2878054_2878300_+	hypothetical protein	A0A1B1W282	Salmonella_phage	3.5e-13	53.8
QAZ14570.1\|2878329_2880594_+	hypothetical protein	H9C157	Pectobacterium_phage	1.5e-102	34.7
QAZ14571.1\|2880590_2881145_+	hypothetical protein	H9C156	Pectobacterium_phage	1.3e-47	59.3
QAZ14572.1\|2881147_2881330_+	hypothetical protein	NA	NA	NA	NA
QAZ14573.1\|2881379_2881577_+	hypothetical protein	H9C154	Pectobacterium_phage	8.3e-10	58.5
QAZ14574.1\|2881542_2881767_+	DUF4224 domain-containing protein	NA	NA	NA	NA
QAZ14575.1\|2881767_2882787_+\|integrase	integrase	A0A192Y7M7	Salmonella_phage	1.2e-91	53.5
QAZ14576.1\|2883374_2884034_+	transmembrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
QAZ14577.1\|2884120_2884450_+	sulfurtransferase TusE	NA	NA	NA	NA
QAZ14578.1\|2884446_2884728_-	acylphosphatase	NA	NA	NA	NA
QAZ14579.1\|2884776_2885556_-	AraC family transcriptional regulator	NA	NA	NA	NA
QAZ14580.1\|2885581_2886130_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
QAZ14581.1\|2886344_2887556_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
QAZ14582.1\|2887613_2887931_+	heat-shock protein HspQ	NA	NA	NA	NA
QAZ14583.1\|2887975_2888392_-	CoA-binding protein	NA	NA	NA	NA
QAZ14584.1\|2888562_2889225_+	hypothetical protein	NA	NA	NA	NA
QAZ14585.1\|2889319_2889778_+	methylglyoxal synthase	NA	NA	NA	NA
QAZ14586.1\|2889813_2891868_-	DNA helicase IV	A7KV33	Bacillus_phage	1.1e-19	27.6
QAZ14587.1\|2891991_2892438_+	YccF domain-containing protein	NA	NA	NA	NA
QAZ14588.1\|2892456_2894610_+	TIGR01666 family membrane protein	NA	NA	NA	NA
QAZ14589.1\|2894596_2895202_-	DNA transformation protein	NA	NA	NA	NA
QAZ14590.1\|2895418_2895928_+	cell division inhibitor SulA	NA	NA	NA	NA
QAZ14591.1\|2896284_2897337_+	porin OmpA	NA	NA	NA	NA
QAZ14592.1\|2897408_2897861_-	macrodomain Ter protein	NA	NA	NA	NA
QAZ14593.1\|2898046_2899807_+\|protease	Lon protease family protein	NA	NA	NA	NA
QAZ14594.1\|2899875_2900394_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
QAZ14595.1\|2900493_2900661_-	ribosome modulation factor	NA	NA	NA	NA
QAZ14596.1\|2900916_2901480_-	hypothetical protein	NA	NA	NA	NA
QAZ14597.1\|2901476_2903117_-	paraquat-inducible protein B	NA	NA	NA	NA
QAZ14598.1\|2903121_2904375_-	paraquat-inducible protein A	NA	NA	NA	NA
QAZ14599.1\|2904389_2906297_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
2906167:2906186	attL	NA	NA	NA	NA
QAZ14600.1\|2906309_2908418_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
QAZ14601.1\|2908516_2909626_+	hypothetical protein	NA	NA	NA	NA
QAZ14602.1\|2909622_2910165_-	cell division protein ZapC	NA	NA	NA	NA
QAZ14603.1\|2910330_2911341_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
QAZ14604.1\|2911548_2914161_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	4.8e-20	22.8
QAZ14605.1\|2914587_2914779_+	DNA-damage-inducible protein I	S4TNM0	Salmonella_phage	6.2e-26	95.2
QAZ14606.1\|2915049_2915736_+	virulence protein	NA	NA	NA	NA
QAZ14607.1\|2915720_2916020_+	hypothetical protein	NA	NA	NA	NA
QAZ14608.1\|2916088_2916715_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
QAZ14609.1\|2917362_2918331_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.1e-195	100.0
QAZ14610.1\|2918806_2919388_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
QAZ14611.1\|2919387_2921826_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
QAZ14612.1\|2921879_2922122_-	hypothetical protein	NA	NA	NA	NA
QAZ14613.1\|2922160_2925511_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	68.6
QAZ14614.1\|2925582_2926287_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
QAZ14615.1\|2926184_2926922_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
QAZ14616.1\|2926931_2927627_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
QAZ14617.1\|2927716_2928250_+	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
QAZ14618.1\|2928366_2928864_-	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
QAZ14619.1\|2928962_2929295_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
QAZ16449.1\|2929291_2932279_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
QAZ14620.1\|2932358_2932688_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
QAZ14621.1\|2932684_2933083_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
QAZ14622.1\|2933128_2933878_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
QAZ14623.1\|2933889_2934291_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
QAZ14624.1\|2934287_2934854_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
QAZ14625.1\|2934834_2935134_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
QAZ14626.1\|2935126_2935450_-	recombinase RecA	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
QAZ16451.1\|2935540_2937622_-	peptidase S14	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
QAZ16450.1\|2937545_2939063_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.5e-175	65.1
QAZ14627.1\|2939089_2939296_-	primosomal replication protein PriB/PriC domain protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
QAZ14628.1\|2939292_2941431_-	DNA packaging protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
QAZ14629.1\|2941387_2941921_-	DNA breaking-rejoining protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
QAZ16453.1\|2942128_2942608_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
QAZ14630.1\|2942625_2943078_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
QAZ16452.1\|2943061_2943391_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
QAZ14631.1\|2943666_2944353_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
QAZ14632.1\|2944713_2945163_+	hypothetical protein	NA	NA	NA	NA
QAZ14633.1\|2945298_2945424_-	hypothetical protein	NA	NA	NA	NA
QAZ14634.1\|2945597_2945915_-	hypothetical protein	NA	NA	NA	NA
QAZ14635.1\|2945981_2946779_-	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
QAZ14636.1\|2946768_2946915_-	hypothetical protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
QAZ14637.1\|2946911_2947523_-	protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
QAZ14638.1\|2947525_2947732_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
QAZ14639.1\|2947731_2948334_-	hypothetical protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
QAZ14640.1\|2948416_2948638_-	hypothetical protein	NA	NA	NA	NA
QAZ14641.1\|2948749_2948983_-	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
QAZ14642.1\|2949274_2949565_-	hypothetical protein	NA	NA	NA	NA
QAZ14643.1\|2949642_2949954_-	hypothetical protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
QAZ14644.1\|2949950_2950298_-	DNA-binding protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
QAZ14645.1\|2950308_2951058_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
QAZ14646.1\|2951060_2952044_-	hypothetical protein	H6WRX7	Salmonella_phage	1.9e-163	100.0
QAZ14647.1\|2952128_2952503_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
QAZ14648.1\|2952468_2952708_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
QAZ14649.1\|2952827_2953238_+	transcriptional regulator	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
QAZ14650.1\|2953287_2953548_+	hypothetical protein	NA	NA	NA	NA
QAZ14651.1\|2953540_2953699_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
QAZ14652.1\|2953720_2954020_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
QAZ14653.1\|2954146_2957032_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	97.3
QAZ14654.1\|2956994_2958152_+	enterohemolysin	S4TTE8	Salmonella_phage	1.6e-217	100.0
QAZ14655.1\|2958194_2958434_+	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
QAZ14656.1\|2958474_2958723_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
QAZ14657.1\|2958767_2960060_+\|integrase	integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
QAZ14658.1\|2960254_2961457_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
QAZ14659.1\|2961537_2962971_-	sodium:alanine symporter family protein	NA	NA	NA	NA
QAZ14660.1\|2963216_2964431_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
QAZ14661.1\|2964517_2964751_+	hypothetical protein	NA	NA	NA	NA
QAZ14662.1\|2964747_2965209_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
QAZ14663.1\|2965409_2966810_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
2977962:2977981	attR	NA	NA	NA	NA

DBSCAN-SWA_7

3026749 : 3106436

Salmonella_phage(65.45%)

integrase,capsid,plate,protease,head,portal,tRNA,tail

attL 3071876:3071892|attR 3106511:3106527

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ14705.1\|3026749_3027454_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
QAZ14706.1\|3027454_3027838_+	hypothetical protein	NA	NA	NA	NA
QAZ14707.1\|3027765_3027984_+	translation initiation factor IF-1	NA	NA	NA	NA
QAZ14708.1\|3028074_3028986_-	LysR family transcriptional regulator	NA	NA	NA	NA
QAZ14709.1\|3029094_3029955_+	pirin family protein	NA	NA	NA	NA
QAZ14710.1\|3029974_3030652_+	hydrolase	NA	NA	NA	NA
QAZ14711.1\|3031240_3031618_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	5.9e-20	42.7
QAZ14712.1\|3031779_3031977_+	hypothetical protein	NA	NA	NA	NA
QAZ14713.1\|3032190_3034467_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
QAZ14714.1\|3034497_3034818_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
QAZ14715.1\|3035141_3035363_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
QAZ14716.1\|3035317_3035512_-	hypothetical protein	NA	NA	NA	NA
QAZ14717.1\|3035492_3037439_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
QAZ14718.1\|3037435_3038554_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.8e-08	38.9
QAZ14719.1\|3038681_3039650_+	DUF535 domain-containing protein	NA	NA	NA	NA
QAZ14720.1\|3039646_3041305_-	ATP-dependent endonuclease	NA	NA	NA	NA
QAZ16457.1\|3041340_3041529_-	hypothetical protein	NA	NA	NA	NA
QAZ14721.1\|3041506_3042406_+	DUF340 domain-containing protein	NA	NA	NA	NA
QAZ14722.1\|3042549_3044202_+	hydroxylamine reductase	NA	NA	NA	NA
QAZ14723.1\|3044213_3045182_+	NADH oxidoreductase	NA	NA	NA	NA
QAZ14724.1\|3045339_3047058_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.7e-29	24.4
QAZ14725.1\|3047096_3048098_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
QAZ14726.1\|3048108_3049542_+	DUF2867 domain-containing protein	NA	NA	NA	NA
QAZ14727.1\|3049637_3050651_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
QAZ14728.1\|3050647_3051478_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	2.3e-08	30.7
QAZ14729.1\|3051474_3051798_-	hypothetical protein	NA	NA	NA	NA
QAZ14730.1\|3051925_3052441_+	lipoprotein	NA	NA	NA	NA
QAZ14731.1\|3052670_3053399_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	5.1e-28	35.8
QAZ14732.1\|3053416_3054148_+	arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA
QAZ14733.1\|3054154_3054871_+	arginine transporter permease subunit ArtQ	NA	NA	NA	NA
QAZ14734.1\|3054870_3055539_+	arginine transporter permease subunit ArtM	NA	NA	NA	NA
QAZ14735.1\|3055775_3056507_+	arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA
QAZ14736.1\|3056528_3056732_+	hypothetical protein	NA	NA	NA	NA
QAZ14737.1\|3056724_3058212_-	sulfatase	NA	NA	NA	NA
QAZ14738.1\|3058221_3058542_-	PTS sugar transporter IIB	NA	NA	NA	NA
QAZ14739.1\|3058571_3059915_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
QAZ14740.1\|3060197_3061328_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	1.2e-23	25.8
QAZ16458.1\|3061370_3061844_-	DUF2593 domain-containing protein	NA	NA	NA	NA
QAZ14741.1\|3061917_3062763_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
QAZ14742.1\|3062759_3063713_-	putrescine ABC transporter permease	NA	NA	NA	NA
QAZ14743.1\|3063722_3064856_-	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.5e-30	34.9
QAZ14744.1\|3064943_3066056_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
QAZ14745.1\|3066404_3066881_-	YbjN domain-containing protein	NA	NA	NA	NA
QAZ14746.1\|3066976_3067879_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	3.5e-34	34.0
QAZ14747.1\|3067936_3068659_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA
QAZ14748.1\|3068642_3068933_-	hypothetical protein	NA	NA	NA	NA
QAZ14749.1\|3069102_3069366_+	glutaredoxin	A0A2I7SAE2	Vibrio_phage	5.9e-27	70.5
QAZ14750.1\|3069397_3069775_-	hypothetical protein	NA	NA	NA	NA
QAZ14751.1\|3070045_3071731_+	transporter	NA	NA	NA	NA
3071876:3071892	attL	NA	NA	NA	NA
QAZ14752.1\|3071966_3072185_-	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-20	69.0
QAZ14753.1\|3072275_3073376_-	late control protein D	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.7
QAZ14754.1\|3073372_3073858_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	3.7e-67	80.6
QAZ14755.1\|3073854_3076932_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	62.9
QAZ14756.1\|3076924_3077044_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
QAZ14757.1\|3077058_3077361_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	1.2e-39	88.0
QAZ14758.1\|3077415_3077931_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	2.1e-89	95.3
QAZ14759.1\|3077940_3079113_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	7.8e-204	90.5
QAZ14760.1\|3079255_3079822_-	DNA-invertase	A0A1S6L009	Salmonella_phage	1.9e-86	84.8
QAZ14761.1\|3079852_3080359_+	hypothetical protein	NA	NA	NA	NA
QAZ14762.1\|3080361_3080772_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	1.1e-19	43.3
QAZ14763.1\|3080752_3080986_-	hypothetical protein	NA	NA	NA	NA
QAZ14764.1\|3080988_3082473_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	1.0e-152	78.7
QAZ14765.1\|3082469_3083075_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	5.8e-110	92.0
QAZ14766.1\|3083067_3083976_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	6.6e-142	90.1
QAZ14767.1\|3083962_3084322_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	1.9e-52	87.4
QAZ14768.1\|3084318_3084897_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	2.9e-103	94.8
QAZ14769.1\|3084995_3086516_+	SIR2 family protein	A0A1S5SA14	Streptococcus_phage	6.5e-09	28.8
QAZ14770.1\|3086519_3086972_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	4.7e-56	76.4
QAZ14771.1\|3086964_3087396_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	4.4e-72	93.7
QAZ14772.1\|3087358_3087562_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	1.4e-23	76.1
QAZ14773.1\|3087491_3087920_-	hypothetical protein	E5G6N2	Salmonella_phage	2.9e-47	77.3
QAZ14774.1\|3087916_3088294_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	1.8e-16	40.8
QAZ16459.1\|3088295_3088769_-	glycoside hydrolase	E5G6N1	Salmonella_phage	8.3e-80	91.0
QAZ14775.1\|3088788_3089004_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
QAZ14776.1\|3089007_3089214_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.2e-30	92.6
QAZ14777.1\|3089213_3089678_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	4.2e-76	89.0
QAZ14778.1\|3089773_3090424_-	hypothetical protein	E5G6M7	Salmonella_phage	8.7e-112	96.3
QAZ14779.1\|3090427_3091486_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	9.9e-182	93.7
QAZ14780.1\|3091502_3092336_-\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
QAZ14781.1\|3092478_3094245_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.5
QAZ14782.1\|3094244_3095276_+\|portal	phage portal protein	E5G6M3	Salmonella_phage	1.3e-170	87.7
QAZ14783.1\|3095316_3096975_-	AAA family ATPase	NA	NA	NA	NA
QAZ14784.1\|3096964_3098113_-	DUF4297 domain-containing protein	NA	NA	NA	NA
QAZ14785.1\|3098353_3098659_-	DinI family protein	E5G6M1	Salmonella_phage	1.1e-32	88.3
QAZ16460.1\|3098597_3098786_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
QAZ14786.1\|3098939_3101354_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.4
QAZ14787.1\|3101350_3102208_-	DNA adenine methylase	E5G6L8	Salmonella_phage	3.2e-162	97.5
QAZ14788.1\|3102204_3102432_-	hypothetical protein	E5G6L7	Salmonella_phage	2.7e-36	100.0
QAZ14789.1\|3102431_3102665_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	1.2e-31	96.1
QAZ14790.1\|3102732_3103074_-	hypothetical protein	E5G6L5	Salmonella_phage	6.6e-55	97.3
QAZ14791.1\|3103191_3103488_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	2.2e-22	92.3
QAZ14792.1\|3103495_3104005_-	hypothetical protein	E5G6L3	Salmonella_phage	5.8e-87	98.8
QAZ14793.1\|3104069_3104273_-	regulator	NA	NA	NA	NA
QAZ16461.1\|3104418_3104988_+	phage repressor protein	A0A1S6KZZ7	Salmonella_phage	3.2e-38	41.9
QAZ14794.1\|3105003_3105195_+	hypothetical protein	A0A0R6PIH8	Moraxella_phage	6.8e-09	65.9
QAZ14795.1\|3105383_3106436_+\|integrase	integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
3106511:3106527	attR	NA	NA	NA	NA

DBSCAN-SWA_8

4424895 : 4469671

Burkholderia_phage(40.91%)

plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ15965.1\|4424895_4425894_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
QAZ15966.1\|4425981_4427292_-	conjugal transfer protein	NA	NA	NA	NA
QAZ15967.1\|4427538_4428054_+	transcriptional regulator Zur	NA	NA	NA	NA
QAZ15968.1\|4428153_4428363_-	CsbD family protein	NA	NA	NA	NA
QAZ16518.1\|4428384_4428498_-	hypothetical protein	NA	NA	NA	NA
QAZ15969.1\|4428494_4429820_-	MATE family efflux transporter	NA	NA	NA	NA
QAZ15970.1\|4429998_4430607_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
QAZ15971.1\|4430715_4431084_-	diacylglycerol kinase	NA	NA	NA	NA
QAZ15972.1\|4431254_4433675_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
QAZ15973.1\|4433773_4434646_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
QAZ15974.1\|4434659_4435157_-	chorismate--pyruvate lyase	NA	NA	NA	NA
QAZ15975.1\|4435337_4436255_-	maltose operon protein MalM	NA	NA	NA	NA
QAZ15976.1\|4436418_4437777_-	maltoporin	NA	NA	NA	NA
QAZ15977.1\|4437865_4438975_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
QAZ15978.1\|4439336_4440527_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
QAZ15979.1\|4440658_4442203_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
QAZ15980.1\|4442217_4443108_+	maltose ABC transporter permease	NA	NA	NA	NA
QAZ15981.1\|4443273_4443684_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
QAZ15982.1\|4443826_4445923_-	YjbH domain-containing protein	NA	NA	NA	NA
QAZ15983.1\|4445922_4446660_-	hypothetical protein	NA	NA	NA	NA
QAZ15984.1\|4446656_4447295_-	YjbF family lipoprotein	NA	NA	NA	NA
QAZ15985.1\|4447358_4447601_-	outer membrane protein	NA	NA	NA	NA
QAZ15986.1\|4448044_4449694_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
QAZ15987.1\|4450038_4451388_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
QAZ15988.1\|4451518_4451866_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
QAZ15989.1\|4452443_4452731_+	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
QAZ15990.1\|4452733_4453339_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
QAZ15991.1\|4453351_4453666_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
QAZ15992.1\|4453825_4454281_+	hypothetical protein	NA	NA	NA	NA
QAZ15993.1\|4454277_4454475_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
QAZ15994.1\|4454464_4455892_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.8e-194	70.9
QAZ15995.1\|4455891_4456416_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
QAZ15996.1\|4456467_4456785_+\|tail	phage tail assembly protein	NA	NA	NA	NA
QAZ15997.1\|4456744_4456873_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
QAZ15998.1\|4456969_4459324_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.8e-67	30.8
QAZ15999.1\|4459323_4460277_+	chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
QAZ16000.1\|4460276_4460486_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
QAZ16001.1\|4460473_4461517_+	phage protein D	Q6QIA2	Burkholderia_phage	3.2e-76	45.1
QAZ16002.1\|4461526_4462249_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	2.3e-12	42.0
QAZ16003.1\|4462257_4462497_+	hypothetical protein	NA	NA	NA	NA
QAZ16004.1\|4462572_4462935_+	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
QAZ16005.1\|4462931_4463861_+	glycosyltransferase	S5FKN0	Shigella_phage	6.7e-150	83.8
QAZ16006.1\|4463860_4465408_+	hypothetical protein	B9UDL6	Salmonella_phage	1.6e-50	30.4
QAZ16007.1\|4465571_4465931_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
QAZ16008.1\|4465921_4467037_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	5.3e-101	52.2
QAZ16009.1\|4467029_4467662_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
QAZ16010.1\|4467664_4469146_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	2.1e-52	52.7
QAZ16011.1\|4469155_4469671_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.3e-33	40.7

DBSCAN-SWA_9

4618503 : 4654221

Salmonella_phage(45.24%)

integrase,capsid,plate,head,holin,portal,terminase,tail

attL 4618296:4618342|attR 4649275:4649321

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4618296:4618342	attL	NA	NA	NA	NA
QAZ16131.1\|4618503_4618920_+	hypothetical protein	S4TTB4	Salmonella_phage	1.8e-33	52.3
QAZ16132.1\|4618954_4619173_-	transcriptional regulator	S4TNZ3	Salmonella_phage	4.7e-38	100.0
QAZ16133.1\|4619250_4620420_-	hypothetical protein	S4TRX8	Salmonella_phage	1.4e-205	95.6
QAZ16134.1\|4620416_4620902_-\|tail	phage tail protein	S4TUC3	Salmonella_phage	5.9e-81	94.4
QAZ16135.1\|4620913_4623355_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	93.1
QAZ16136.1\|4623347_4623503_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
QAZ16137.1\|4623499_4623835_-\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
QAZ16138.1\|4623897_4624416_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.4e-93	99.4
QAZ16139.1\|4624431_4625619_-\|tail	phage tail protein	Q6K1H0	Salmonella_virus	2.0e-223	100.0
QAZ16140.1\|4625753_4626323_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.0e-92	86.8
QAZ16141.1\|4626322_4628065_-	hypothetical protein	A0A0M3ULF6	Salmonella_phage	1.5e-267	97.1
QAZ16142.1\|4628075_4628606_-\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	1.9e-104	100.0
QAZ16143.1\|4628598_4629507_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.7e-158	98.7
QAZ16144.1\|4629513_4629861_-\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	2.1e-56	98.3
QAZ16145.1\|4629857_4630499_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	2.4e-98	85.0
QAZ16146.1\|4630575_4631952_-	DUF4062 domain-containing protein	NA	NA	NA	NA
QAZ16147.1\|4631956_4632424_-	phage virion morphogenesis protein	O80313	Escherichia_phage	9.8e-49	67.8
QAZ16148.1\|4632416_4632884_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	2.2e-56	69.0
QAZ16149.1\|4632846_4633092_-\|holin	holin	S4TNY4	Salmonella_phage	5.5e-27	73.1
QAZ16150.1\|4632991_4633405_-	protein lysB	O80310	Escherichia_phage	8.4e-36	59.9
QAZ16151.1\|4633401_4633911_-	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
QAZ16152.1\|4633894_4634116_-	primosomal protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
QAZ16153.1\|4634106_4634310_-\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
QAZ16154.1\|4634309_4634810_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
QAZ16155.1\|4634907_4635666_-\|terminase	terminase	Q94MJ2	Enterobacteria_phage	2.7e-80	67.1
QAZ16156.1\|4635669_4636830_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	2.8e-129	62.5
QAZ16157.1\|4636861_4637725_-\|capsid	capsid scaffolding protein	A0A218M4L9	Erwinia_phage	4.5e-100	64.8
QAZ16158.1\|4637889_4639659_+	oxidoreductase	Q9T0R3	Escherichia_phage	3.2e-286	81.0
QAZ16159.1\|4639658_4640696_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	7.7e-163	78.7
QAZ16160.1\|4641216_4641408_-	hypothetical protein	S4TRZ0	Salmonella_phage	1.1e-27	100.0
QAZ16161.1\|4641406_4641838_+	hypothetical protein	S4TUD6	Salmonella_phage	1.1e-75	100.0
QAZ16162.1\|4641971_4643012_+	cell filamentation protein Fic	S4TP71	Salmonella_phage	6.3e-197	100.0
QAZ16163.1\|4643008_4643206_-	hypothetical protein	NA	NA	NA	NA
QAZ16523.1\|4643384_4645661_-	replication endonuclease	S4TTC1	Salmonella_phage	0.0e+00	88.0
QAZ16164.1\|4645650_4645926_-	hypothetical protein	M1TAP2	Escherichia_phage	7.0e-31	72.5
QAZ16165.1\|4645922_4646147_-	hypothetical protein	A0A0F7LDG9	Escherichia_phage	2.0e-23	75.7
QAZ16166.1\|4646448_4646673_-	DUF2732 domain-containing protein	Q7Y4C2	Escherichia_virus	3.4e-23	78.4
QAZ16167.1\|4646736_4647237_-	replication protein B	M1SV55	Escherichia_phage	1.8e-85	91.0
QAZ16168.1\|4647406_4647679_-	hypothetical protein	Q1JS36	Enterobacteria_phage	1.0e-42	87.8
QAZ16169.1\|4647815_4648109_+	XRE family transcriptional regulator	Q1JS45	Enterobacteria_phage	1.6e-36	75.3
QAZ16170.1\|4648178_4649159_+\|integrase	integrase	S4TP66	Salmonella_phage	1.5e-179	96.0
QAZ16171.1\|4649343_4649844_-	stress adaptor protein CpxP	NA	NA	NA	NA
4649275:4649321	attR	NA	NA	NA	NA
QAZ16172.1\|4649994_4650693_+	DNA-binding response regulator	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
QAZ16173.1\|4650689_4652063_+	two-component system sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
QAZ16174.1\|4652110_4652314_-	hypothetical protein	NA	NA	NA	NA
QAZ16175.1\|4652434_4652830_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
QAZ16176.1\|4652841_4653594_-	MOSC domain-containing protein	NA	NA	NA	NA
QAZ16177.1\|4653600_4654221_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP025236

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

41199 : 105787

Morganella_phage(20.0%)

head,integrase,transposase,tail

attL 53661:53678|attR 111363:111380

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ16595.1\|41199_41817_+\|head,tail	phage head-tail adapter protein	NA	NA	NA	NA
QAZ16596.1\|41817_42024_+	hypothetical protein	NA	NA	NA	NA
QAZ16597.1\|42028_42328_+	RNA-binding protein	A0A0K1LLW2	Caulobacter_phage	3.6e-20	55.4
QAZ16598.1\|42418_42907_-	hypothetical protein	NA	NA	NA	NA
QAZ16599.1\|42921_45114_-	DNA topoisomerase III	A0A1X9I6W8	Streptococcus_phage	9.9e-43	29.4
QAZ16600.1\|45113_45347_-	hypothetical protein	NA	NA	NA	NA
QAZ16601.1\|45328_45946_-	hypothetical protein	NA	NA	NA	NA
QAZ16602.1\|46113_49086_+	conjugal transfer protein TraI	NA	NA	NA	NA
QAZ16603.1\|49082_50948_+	conjugal transfer protein	NA	NA	NA	NA
QAZ16604.1\|50958_51543_+	hypothetical protein	NA	NA	NA	NA
QAZ16605.1\|51499_52129_+	DUF4400 domain-containing protein	NA	NA	NA	NA
QAZ16606.1\|52138_52585_+	hypothetical protein	NA	NA	NA	NA
QAZ16607.1\|52594_52972_+	hypothetical protein	NA	NA	NA	NA
QAZ16608.1\|52971_53634_+	hypothetical protein	NA	NA	NA	NA
53661:53678	attL	NA	NA	NA	NA
QAZ16609.1\|53957_54335_+	hypothetical protein	NA	NA	NA	NA
QAZ16610.1\|54479_54761_+	type IV conjugative transfer system protein TraL	NA	NA	NA	NA
QAZ16611.1\|54757_55384_+	pilus assembly protein	NA	NA	NA	NA
QAZ16612.1\|55367_56285_+	conjugal transfer protein TraK	NA	NA	NA	NA
QAZ16613.1\|56281_57598_+	conjugal transfer protein TraB	NA	NA	NA	NA
QAZ16614.1\|57594_58173_+	type IV conjugative transfer system protein TraV	NA	NA	NA	NA
QAZ16615.1\|58176_58569_+	conjugal transfer protein TraA	NA	NA	NA	NA
QAZ16616.1\|60510_61218_-	disulfide isomerase	NA	NA	NA	NA
QAZ16617.1\|61366_66853_-	hypothetical protein	NA	NA	NA	NA
QAZ16618.1\|66898_67324_-	LuxR family transcriptional regulator	NA	NA	NA	NA
QAZ16619.1\|67580_67898_+	quaternary ammonium compound-resistance protein SugE	NA	NA	NA	NA
QAZ16620.1\|67894_68428_-	hypothetical protein	A0A1W6JNX6	Morganella_phage	6.1e-47	54.1
QAZ16621.1\|68521_69667_-	class C beta-lactamase CMY-2	NA	NA	NA	NA
QAZ16622.1\|70485_71748_+\|transposase	IS1380 family transposase ISEc9	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
QAZ16623.1\|72071_73217_+	class C beta-lactamase CMY-2	NA	NA	NA	NA
QAZ16624.1\|73310_73844_+	hypothetical protein	A0A1W6JNX6	Morganella_phage	6.1e-47	54.1
QAZ16625.1\|73840_74158_-	quaternary ammonium compound-resistance protein SugE	NA	NA	NA	NA
QAZ16626.1\|74414_74840_+	LuxR family transcriptional regulator	NA	NA	NA	NA
QAZ16627.1\|74885_80372_+	hypothetical protein	NA	NA	NA	NA
QAZ16628.1\|80520_81228_+	disulfide isomerase	NA	NA	NA	NA
QAZ16629.1\|81224_83672_+	type IV secretion system protein TraC	NA	NA	NA	NA
QAZ16630.1\|83686_84004_+	hypothetical protein	NA	NA	NA	NA
QAZ16631.1\|84000_84531_+	S26 family signal peptidase	NA	NA	NA	NA
QAZ16632.1\|84493_85759_+	conjugal transfer protein TraW	NA	NA	NA	NA
QAZ16633.1\|85755_86427_+	diguanylate phosphodiesterase	NA	NA	NA	NA
QAZ16634.1\|87454_88159_-\|transposase	IS6 family transposase IS15DIV	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QAZ16635.1\|88221_88926_-\|transposase	IS6 family transposase IS15DI	A0A077SL39	Escherichia_phage	1.2e-138	99.6
QAZ16636.1\|89135_90125_-	DUF3330 domain-containing protein	NA	NA	NA	NA
QAZ16637.1\|90121_90358_-	mercury resistance protein	NA	NA	NA	NA
QAZ16638.1\|90354_90720_-	transcriptional regulator	NA	NA	NA	NA
QAZ16639.1\|90831_91470_-	alkylmercury lyase	NA	NA	NA	NA
QAZ16640.1\|91484_93170_-	mercury(II) reductase	A0A2K5B2C5	Erysipelothrix_phage	1.1e-38	27.9
QAZ16641.1\|93241_93517_-	mercuric transporter periplasmic component	NA	NA	NA	NA
QAZ16642.1\|93532_93883_-	mercuric transporter	NA	NA	NA	NA
QAZ16643.1\|93954_94389_+	mercuric resistance operon regulatory protein	NA	NA	NA	NA
QAZ16644.1\|94488_95493_+\|transposase	IS110 family transposase	NA	NA	NA	NA
QAZ16645.1\|96108_96510_+	hypothetical protein	NA	NA	NA	NA
QAZ16646.1\|96623_97349_+	hypothetical protein	NA	NA	NA	NA
QAZ16647.1\|97323_97527_-	hypothetical protein	NA	NA	NA	NA
QAZ16648.1\|97481_101735_+	RHS repeat protein	A0A2H4JHK7	uncultured_Caudovirales_phage	1.1e-18	47.6
QAZ16649.1\|101706_102147_+	hypothetical protein	NA	NA	NA	NA
QAZ16650.1\|102785_103388_-	hypothetical protein	NA	NA	NA	NA
QAZ16651.1\|103618_103939_+	hypothetical protein	NA	NA	NA	NA
QAZ16652.1\|103957_104245_+	hypothetical protein	NA	NA	NA	NA
QAZ16653.1\|104237_104774_+	hypothetical protein	NA	NA	NA	NA
QAZ16654.1\|104776_105787_+\|integrase	integrase	A0A0K0N6I5	Gordonia_phage	3.1e-07	31.9
111363:111380	attR	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025234

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP025236

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection