CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP025244	Salmonella enterica subsp. enterica serovar Newport str. CDC 2012K-0663 plasmid pSNE1-2012K-0663, complete sequence	0 crisprs	NA	0	0
CP025243	Salmonella enterica subsp. enterica serovar Newport str. CDC 2012K-0663 chromosome, complete genome	3 crisprs	WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,cas3,cas14j,DEDDh,DinG,c2c9_V-U4	30	12
CP025245	Salmonella enterica subsp. enterica serovar Newport str. CDC 2012K-0663 plasmid pSNE2-2012K-0663, complete sequence	0 crisprs	DEDDh	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP025243_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025243_1

1006049-1007235

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
NGTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR

19 spacers

cas8e,cse2gr11

The CRISPR arrays of CP025243_1

>merge|CP025243|1|1006049-1007235|CRISPRCasFinder,CRT,PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGCTGGCGGCAAAAGAACTCGCTAAATGGGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTGCGGCAGCGCGCAATCGAGACACGCCATGTGTTCCCCGCGCCAGCGGGGATAAACCGCACAAAACGCCAGTGGCATGGTACAACCCGTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGTGACCATGTTTAACTCTAAATCAGGCCGTGTGTTCCCAGCGCCAGCGGGGATAAACCGTCATGCTTTCGACTAAATACTACCGCGACAACGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAATAACAACATTATCAGTGTGAAAAGTCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGATATGAAAAACGTAAAAATTTACACCGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAATAGGACAGCCATTCGAGCGCCCAGAGTTTGTGTTCCCCGCGCCAGCGGGGATAAACCGGTCAGTATGCACTGCTTGATAAAGTCAGGCCAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACTAACGTCTATAGCTAAATGTAGAGAAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGTTTGGAGTCAATGTTATTTCTTCAGGTCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTCGCTGGTTGCTCCAACTCCTGATATGCCGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAAAATCTTCTTTCATATAACCGTAAGGGTTGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGTTTTGTCACCTCAACGGTCGGGAGTGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGCAACAGTTTCTTACCGCAAGCAGTTTGAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATCATCGGGATTCATTTTGTTGTCCGGGTGGCGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGTGCTCTATGTCTAAAAATAAAAGCGGTTCGTGTTCCCTGCGCCAGCGGGGATAAACCCAGCACAATCATTATTAGATGAACTTTCATCAAGTGTTCCCCGCGCAGCGGGGATAAACCGGGGATCGCGCTGGCGGTCGCATCCGTTGCCGTGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP025243|1|1|1006049-1007235|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCA
AGTGTTCCCCGCGCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCGT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP025243|1|1|1006049-1007234|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCTGGCGGCAAAAGAACTCGCTAAATGGGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTGCGGCAGCGCGCAATCGAGACACGCCAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCA
AGTGTTCCCCGCGCAGCGGGGATAAACCG	GGGATCGCGCTGGCGGTCGCATCCGTTGCCG
TGTGTTCCCCGCGCCAACAAGGATAGCCG

>CP025243|1|1|1006171-1007174|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CACAAAACGCCAGTGGCATGGTACAACCCGTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGTGACCATGTTTAACTCTAAATCAGGCCGT
GTGTTCCCAGCGCCAGCGGGGATAAACCG	TCATGCTTTCGACTAAATACTACCGCGACAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAATAACAACATTATCAGTGTGAAAAGTCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGATATGAAAAACGTAAAAATTTACACCGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAATAGGACAGCCATTCGAGCGCCCAGAGTTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTCAGTATGCACTGCTTGATAAAGTCAGGCCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACTAACGTCTATAGCTAAATGTAGAGAAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGTTTGGAGTCAATGTTATTTCTTCAGGTCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTCGCTGGTTGCTCCAACTCCTGATATGCCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAAAATCTTCTTTCATATAACCGTAAGGGTT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGTTTTGTCACCTCAACGGTCGGGAGTGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGCAACAGTTTCTTACCGCAAGCAGTTTGAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATCATCGGGATTCATTTTGTTGTCCGGGTGGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGTGCTCTATGTCTAAAAATAAAAGCGGTTC
GTGTTCCCTGCGCCAGCGGGGATAAACCC	AGCACAATCATTATTAGATGAACTTTCATCAA
GTGTTCCCCGCGCAGCGGGGATAAACCG

Protein	Signature genes	Signature genes Name	Protein_function
CP025243.1\|QAZ27473.1\|1005080_1005752_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP025243.1\|QAZ27471.1\|1001926_1003564_+\|CTP-synthetase	unknown	unknown	gnl\|CDD\|235437
CP025243.1\|QAZ27480.1\|1017931_1019467_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP025243.1\|QAZ27464.1\|994593_995130_-\|fimbrial-protein-SteF	unknown	unknown	gnl\|CDD\|185168
CP025243.1\|QAZ27469.1\|999702_1000290_-\|fimbrial-protein-SteA	unknown	unknown	gnl\|CDD\|185169
CP025243.1\|QAZ31211.1\|1008508_1008679_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP025243.1\|QAZ27478.1\|1012590_1013325_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP025243.1\|QAZ27479.1\|1013213_1013456_-\|hypothetical-protein	unknown	unknown	unknown
CP025243.1\|QAZ27470.1\|1000898_1001699_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP025243.1\|QAZ27475.1\|1008217_1008580_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP025243.1\|QAZ27472.1\|1003646_1004945_+\|enolase	unknown	unknown	gnl\|CDD\|234617
CP025243.1\|QAZ31212.1\|1013537_1014491_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP025243.1\|QAZ27465.1\|995126_995597_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185179
CP025243.1\|QAZ27477.1\|1010802_1012515_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP025243.1\|QAZ27481.1\|1019483_1020086_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193
CP025243.1\|QAZ27466.1\|995611_996118_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185178
CP025243.1\|QAZ27474.1\|1007332_1008130_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158
CP025243.1\|QAZ27476.1\|1009003_1010803_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP025243.1\|QAZ27467.1\|996137_996911_-\|fimbrial-protein	unknown	unknown	gnl\|CDD\|185177
CP025243.1\|QAZ27468.1\|996923_999623_-\|fimbrial-biogenesis-outer-membrane-usher-protein	unknown	unknown	gnl\|CDD\|185176

Protein	Function_ID	Function_description	E-value
CP025243.1\|QAZ27473.1\|1005080_1005752_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP025243.1\|QAZ27471.1\|1001926_1003564_+\|CTP-synthetase	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP025243.1\|QAZ27480.1\|1017931_1019467_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP025243.1\|QAZ27464.1\|994593_995130_-\|fimbrial-protein-SteF	gnl\|CDD\|185168	PRK15260, PRK15260, fimbrial protein SteF; Provisional.	1.00241e-120
CP025243.1\|QAZ27469.1\|999702_1000290_-\|fimbrial-protein-SteA	gnl\|CDD\|185169	PRK15261, PRK15261, fimbrial protein SteA; Provisional.	5.36845e-100
CP025243.1\|QAZ27478.1\|1012590_1013325_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
CP025243.1\|QAZ27470.1\|1000898_1001699_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	3.42454e-158
CP025243.1\|QAZ27475.1\|1008217_1008580_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP025243.1\|QAZ27472.1\|1003646_1004945_+\|enolase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP025243.1\|QAZ31212.1\|1013537_1014491_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025243.1\|QAZ27465.1\|995126_995597_-\|fimbrial-protein	gnl\|CDD\|185179	PRK15276, PRK15276, putative fimbrial subunit SteE; Provisional.	1.41178e-100
CP025243.1\|QAZ27477.1\|1010802_1012515_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP025243.1\|QAZ27481.1\|1019483_1020086_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37
CP025243.1\|QAZ27466.1\|995611_996118_-\|fimbrial-protein	gnl\|CDD\|185178	PRK15275, PRK15275, putative fimbrial protein SteD; Provisional.	4.31975e-105
CP025243.1\|QAZ27474.1\|1007332_1008130_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	5.39566e-102
CP025243.1\|QAZ27476.1\|1009003_1010803_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP025243.1\|QAZ27467.1\|996137_996911_-\|fimbrial-protein	gnl\|CDD\|185177	PRK15274, PRK15274, putative periplasmic fimbrial chaperone protein SteC; Provisional.	0
CP025243.1\|QAZ27468.1\|996923_999623_-\|fimbrial-biogenesis-outer-membrane-usher-protein	gnl\|CDD\|185176	PRK15273, PRK15273, fimbrial biogenesis outer membrane usher protein.	0

>CP025243.1|QAZ27473.1|1005080_1005752_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP025243.1|QAZ27472.1|1003646_1004945_+|enolase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP025243.1|QAZ27471.1|1001926_1003564_+|CTP-synthetase
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRNEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDAQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP025243.1|QAZ27470.1|1000898_1001699_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSLPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP025243.1|QAZ27469.1|999702_1000290_-|fimbrial-protein-SteA
MKSSHFCKLAVTASLVMGIVSGAQAAGSNTAKVTFLGNIVDSPCSVTLDTEDQTVNMGSSIGNGTLSNGKTTINNARTFHIDLEGCTWATEKNMNVVFTTGSGTTAATGATDNLALMKTDGTGAISNVSLAIGDAGKNNIKLGDTYTQAIADLDGDTILDEKQSLNFTAWLVGAATGTVGTGEFSSAANVTISYL
>CP025243.1|QAZ27468.1|996923_999623_-|fimbrial-biogenesis-outer-membrane-usher-protein
MMNNTWKSVLCPIACGVGMLLSVSPYSASGKDIEFNTDFLDVKNRDNVNIAQFSRKGFILPGVYLLQIKINGQTLPQEFPVNWVIPEHDPQGSEVCAEPELVTQLGIKPELAEKLVWITHGERQCLAPDSLKGMDFQADLGHSTLLVNLPQAYMEYSDVDWDPPARWDNGIPGIILDYNINNQLRHDQESGSEEQSISGNGTLGANLGAWRLRADWQASYDHRDDDENTSTLHDQSWSRYYAYRALPTLGAKLTLGESYLQSDVFDSFNYIGASVVSDDQMLPPKLRGYAPEIVGIARSNAKVKVSWQGRVLYETQVPAGPFRIQDLNQSVSGTLHVTVEEQNGQTQEFDVNTASVPFLTRPGMVRYKMALGRPQDWDHHPITGTFASAEASWGVTNGWSLYGGAIGESSYQAVALGSGKDLGVVGAVAVDITHSIAHMPQDDGFDGETLQGNSYRISYSRDFDEIDSRLTFAGYRFSEKNFMSMSDYLDAKTYHHLNAGHEKERYTVTYNQNFREQGMSAYFSYSRSTFWDSPDQSNYNLSLSWYFDLGSIKNLSASLNGYRSEYNGDKDDGVYISLSVPWGNDSISYNGTFNGSQHRNQLGYSGHSQNGDNWQLHVGQDEQGAQADGYYSHQGALTDIDLSADYEEGSYRSLGMSLRGGMTLTTQGGALHRGSLAGSTRLLVDTDGIADVPVSGNGSPTSTNIFGKAVIADVGSYSRSLARIDLNKLPEKAEATKSVVQITLTEGAIGYRHFDVVSGEKMMAVFRLADGDFPPFGAEVKNERQQQLGLVADDGNAWLAGVKAGETLKVFWDGAAQCEASLPPTFTPELLANALLLPCKILEGQPPTAPQKSSPLPAQPLIQEHTQTDGQPAAPVATTTQTPPIPLADNHAVNRKDME
>CP025243.1|QAZ27467.1|996137_996911_-|fimbrial-protein
MNKTNHFKRQALIASVLLAAPLVSHSAIVPDRTRVIFNGNENSITVTLKNGNATLPYLAQAWLEDDKFAKDTRYFTALPPLQRIEPKSDGQVKVQPLPAAASLPQDRESLFYFNVREIPPKSDKPNTLQLALQTRIKFFYRPVAVARQVDKTHPWQTKLTLTYQGDGVIFDNPTPFYLVISNAGSKENETASGFKNLLIAPREKVTSPIKGASLGSSPVVGYVDDYGGHRLLVFTCSGNTCKVNEEKTRDAEKKANK
>CP025243.1|QAZ27466.1|995611_996118_-|fimbrial-protein
MTMLTRWKMLVLLCGGFVTGTEAAGTKTVQLELHLVVTQPPPCTVGGASVEFGDVLTTKVGDASQTKPVGYSLNCDGRASDYLKLQIQGTTTTISGEQVLQTSVQGLGIRIQQAGNKQLVPVGITDWLNFTLSGSNGPELEAVPVKEPTTQLAGGDFNASATLVVDYQ
>CP025243.1|QAZ27465.1|995126_995597_-|fimbrial-protein
MKRVLILTLLITQFACADNLTFHGKLINPPACTINNGETLEVSFGSVIIDNIDGVNYLTEIPWTLTCDSSFRDDALTFTLSYLGTATPYSANALTTNVPELGIELQQNGTVFPPGTSLTIDESSLPTLKAVPVKQPGKEPAEGDFEAFATLQVDYQ
>CP025243.1|QAZ27464.1|994593_995130_-|fimbrial-protein-SteF
MNRIFQTAGHLIGGVMLWAVCNTLPAATPNVHYSGKLVAGACNLVVDNDTMATVDFHTIGSDNFDASGQTTPVPFKLSLQDCKTALANGVLVTFQGVEDSTLPGLLALEPSSEASGFAIGVETAAQQPVSINATVGTAFVLKEGITTINLQARLQKYAGEEVMPGEFSGSATVSFEYQ
>CP025243.1|QAZ27474.1|1007332_1008130_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKARPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDNSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRGPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEQKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP025243.1|QAZ27475.1|1008217_1008580_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP025243.1|QAZ31211.1|1008508_1008679_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP025243.1|QAZ27476.1|1009003_1010803_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPGVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLAATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASSQAETENEVHVTVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPQTPVIMIGPGTGIAPFRAFMQQRAAEGAEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLNRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP025243.1|QAZ27477.1|1010802_1012515_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGATYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGVDTFKEEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVSAQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENITEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP025243.1|QAZ27478.1|1012590_1013325_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP025243.1|QAZ27479.1|1013213_1013456_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYDQFKIRLPAGFFIAASIIIPRKDNHPSCSPHSRFSPKNRVSSSAMPGSHLRVVCISPTDR
>CP025243.1|QAZ31212.1|1013537_1014491_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP025243.1|QAZ27480.1|1017931_1019467_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>CP025243.1|QAZ27481.1|1019483_1020086_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK

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Crispr_ID: CP025243_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025243_2

1023904-1025518

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

26 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e

The CRISPR arrays of CP025243_2

>merge|CP025243|2|1023904-1025518|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGCTGGAACGGCAGTATTTAAAAGGGGTTATTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGTGGGCGCCCGGATTGTTTGCGTGCGGCGACGGGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATTTACCCGCCACTTATTCCCCATTGCATGTGTTCCCCGCGCCAGCGGGGATAAATCGGGACTATCAAACCATCTATGATGCCAATTTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGCGGGGCTGGTATTCGATACAGACCCGGCTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGGAATAAAAATGAATTTGAGTCAACTCTATAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTAGGCTGCGGTTGGGCACCGAAGAAAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGATTATCCCGGAAATCGTGATCAACTACGCAGGGTGTTCCCCGCGCCAGCGGGGATAAACCGATTGTTATTGCGGTAACGGATAATTTATCATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCTGGCGATCGCATTTGGGTGCGGGAAACATTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGAATATGGTGATAATGTTGCACCTTCGCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTCGGCCTGTTTTTTGATTTTGACAATCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAATAACCGACGAGGGCAAACGCCGTGCGCGGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGACTGAGGGAATAGGGACCGTAATTGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGACAATGTTGCGTCTAATTCTCATTAATTAAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACGAAAATCAGCCCGCATATTCCGACACAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGTGGTTTTAGGTTGTCGGTGCTGATCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGATTAAACAACAGGATTTTGCAATTACTGTTGGGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGACGGCAGCAGCGTGAAACACGTCAGTATTGTGTTCCCCGCGCCAGCGGGGATAAACCGTCAGCTGTTCCATACTCACCCCCTGTGCAATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGATGTATGCCGCGACGATCGAGAGCGAACTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGCAGATGAAAAATATTTACAGATTGGTAAAGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAATCCCGCTGACAATATTTTGCCACCTCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGAAAACTATCTCTATCGCAGGCTGGATATGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAAAGGTACTCCCATATCTCCAGCCAACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTAAGTTACGCCAGTGCGGGCGTGTTGCTCATCGTGTTCCCCGCGCCAGCGGGGATAAACAC

>CP025243|2|2|1023904-1025517|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATC	GGGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTGTTATTGCGGTAACGGATAATTTATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCTGGCGATCGCATTTGGGTGCGGGAAACATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAGGACTGAGGGAATAGGGACCGTAATTGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GGCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACC	GAAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACC	GCCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACC	GTAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACA

>CP025243|2|2|1023904-1025518|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTTATTGCGGTAACGGATAATTTATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGGCGATCGCATTTGGGTGCGGGAAACATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGACTGAGGGAATAGGGACCGTAATTGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

>CP025243|2|2|1023904-1025518|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTGGAACGGCAGTATTTAAAAGGGGTTATTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGGGCGCCCGGATTGTTTGCGTGCGGCGACGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATTTACCCGCCACTTATTCCCCATTGCAT
GTGTTCCCCGCGCCAGCGGGGATAAATCG	GGACTATCAAACCATCTATGATGCCAATTTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGCGGGGCTGGTATTCGATACAGACCCGGCTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GGAATAAAAATGAATTTGAGTCAACTCTATAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTAGGCTGCGGTTGGGCACCGAAGAAAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTATCCCGGAAATCGTGATCAACTACGCAGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTGTTATTGCGGTAACGGATAATTTATCATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCTGGCGATCGCATTTGGGTGCGGGAAACATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGAATATGGTGATAATGTTGCACCTTCGCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTCGGCCTGTTTTTTGATTTTGACAATCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAATAACCGACGAGGGCAAACGCCGTGCGCG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGACTGAGGGAATAGGGACCGTAATTGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ACAATGTTGCGTCTAATTCTCATTAATTAAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGAAAATCAGCCCGCATATTCCGACACA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGTGGTTTTAGGTTGTCGGTGCTGATCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	ATTAAACAACAGGATTTTGCAATTACTGTTGG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGACGGCAGCAGCGTGAAACACGTCAGTATT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCAGCTGTTCCATACTCACCCCCTGTGCAATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGATGTATGCCGCGACGATCGAGAGCGAACT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGCAGATGAAAAATATTTACAGATTGGTAAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAATCCCGCTGACAATATTTTGCCACCTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGAAAACTATCTCTATCGCAGGCTGGATAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAAAGGTACTCCCATATCTCCAGCCAACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TAAGTTACGCCAGTGCGGGCGTGTTGCTCATC
GTGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP025243.1\|QAZ27485.1\|1022605_1023523_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP025243.1\|QAZ27486.1\|1023525_1023819_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP025243.1\|QAZ27487.1\|1025532_1026579_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP025243.1\|QAZ27480.1\|1017931_1019467_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP025243.1\|QAZ27483.1\|1021176_1021902_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP025243.1\|QAZ27493.1\|1030673_1031384_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP025243.1\|QAZ27495.1\|1031859_1032909_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP025243.1\|QAZ27478.1\|1012590_1013325_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP025243.1\|QAZ27490.1\|1029173_1029779_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP025243.1\|QAZ27479.1\|1013213_1013456_-\|hypothetical-protein	unknown	unknown	unknown
CP025243.1\|QAZ27492.1\|1030343_1030655_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP025243.1\|QAZ27482.1\|1020102_1021167_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|378153
CP025243.1\|QAZ31212.1\|1013537_1014491_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP025243.1\|QAZ27488.1\|1026829_1027738_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375
CP025243.1\|QAZ27496.1\|1032889_1033651_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP025243.1\|QAZ27484.1\|1021901_1022606_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|187795
CP025243.1\|QAZ27491.1\|1029796_1030153_+\|DUF3561-domain-containing-protein	unknown	unknown	gnl\|CDD\|371891
CP025243.1\|QAZ27489.1\|1027747_1029187_+\|sulfate-adenylyltransferase	unknown	unknown	gnl\|CDD\|235349
CP025243.1\|QAZ27494.1\|1031383_1031863_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP025243.1\|QAZ27481.1\|1019483_1020086_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09670_cse2gr11_CAS-I-E	gnl\|CDD\|274193

Protein	Function_ID	Function_description	E-value
CP025243.1\|QAZ27485.1\|1022605_1023523_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	3.73134e-156
CP025243.1\|QAZ27486.1\|1023525_1023819_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.50902e-63
CP025243.1\|QAZ27487.1\|1025532_1026579_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP025243.1\|QAZ27480.1\|1017931_1019467_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP025243.1\|QAZ27483.1\|1021176_1021902_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	1.58885e-47
CP025243.1\|QAZ27493.1\|1030673_1031384_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	1.96864e-119
CP025243.1\|QAZ27496.1\|1032889_1033651_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP025243.1\|QAZ27478.1\|1012590_1013325_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	1.47943e-138
CP025243.1\|QAZ27490.1\|1029173_1029779_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP025243.1\|QAZ27495.1\|1031859_1032909_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP025243.1\|QAZ27492.1\|1030343_1030655_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP025243.1\|QAZ27482.1\|1020102_1021167_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|378153	pfam09344, Cas_CT1975, CT1975-like protein. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum.	2.25497e-121
CP025243.1\|QAZ31212.1\|1013537_1014491_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP025243.1\|QAZ27488.1\|1026829_1027738_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0
CP025243.1\|QAZ27484.1\|1021901_1022606_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|187795	cd09664, Cas6_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas6e. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas6e is an endoribonuclease that generates crRNA; This family is specific for CRISPR/Cas system I-E subtype; Homologous to Cas6 (RAMP superfamily protein); Possesses double RRM/ferredoxin fold; also known as Cse3 family.	7.8492e-90
CP025243.1\|QAZ27491.1\|1029796_1030153_+\|DUF3561-domain-containing-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP025243.1\|QAZ27489.1\|1027747_1029187_+\|sulfate-adenylyltransferase	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP025243.1\|QAZ27494.1\|1031383_1031863_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	1.27909e-104
CP025243.1\|QAZ27481.1\|1019483_1020086_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|274193	TIGR02548, CRISPR_system_Cascade_subunit_CasB, CRISPR type I-E/ECOLI-associated protein CasB/Cse2. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It was designated Cse2 originally, and renamed CasB based on its characterization in the CASCADE complex.	2.49445e-37

>CP025243.1|QAZ27486.1|1023525_1023819_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMLVVVTENVPPRLRGRLVVWLLEIRAGVYVGDVSAKIREMIWQQVSVLADEGNVVMAWATNTESGFEFQTFGVNRRIPVDLDGLRLVSFLPVENQ
>CP025243.1|QAZ27485.1|1022605_1023523_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MSWLPLNPIPLKDRVSMIFLQYGQIDVIDGAFVLIDKTGVRTHIPVGSVACIMLEPGTRVSHAAVRLAATVGTLLVWVGEAGVRVYASGQPGGARSDKLLYQAKLALDEDLRLKVVRKMFELRFGEPAPSRRSVDQLRGIEGSRVWATYALLAKQYGVKWQGRRYDPKDWEKGDVINQCISSATSCLYGVTEAAILAAGYAPAIGFVHTGKPLSFVYDIADIIKFETVVPKAFEIARRNPAEPDRDVRIACRDIFRSGKTLAKLIPLIEDVLAAGEIQPPLPPEDSQPIAIPLPVALGDSGHRST
>CP025243.1|QAZ27484.1|1021901_1022606_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRIQLRFNNLRPEMLAKWNSARPYASHQWLWQLFPEQELRQFLFREEAHGGFFMLSAIPPLLQHTLFLIETKPFNPQLTNGLELDFQLRANPVITRNGKRSDVMMNAKHQAKANGVEKERWWELQQQAAQAWLEQQGQQHGFRLIAPEPDDFAMWAGDEYSELQAHCGCVQAYQQHRFVRKDQETPITFSSVDFSGALCITDAALFKQALFSGLGKSKALGCGMLMVKRKR
>CP025243.1|QAZ27483.1|1021176_1021902_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MKEYLVFQLYAPLASWGEEASGEIRHSATVPTRSALLGLLAAALGIRRDEEARLNNFNQHYHLAVHALASQDRWLRDYHTVGAPRENKKYRYYTRRDELTLAPDEVGTLISQREYRCDGYWHVAISATPDAPHSLSELREALLTPHFPLYLGRKSCPLALPLAARLMTGTLKEVFTHAVEEISAAELSGFTLREGICYWDDPDEESLVWQQKQHSNNQPVSRQRWQFGGYTRFNGPLQERT
>CP025243.1|QAZ27482.1|1020102_1021167_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MIMTTFIQLHLLTAYAPANLNRDESGRPKTAFMGGVERLRVSSQSLKRAWRVSETFEAAMDGFMGKRTRRIGVDYVYRPMKDAGIEEKIAKSSSELIAKQFGKLKSDKDAKPEKNLEIEQIVHVSNHEISLIKQLVDTLIADKREPNDEEVKLLRKEQRSVDMALFGRMLASSPEFNVEAACQVSHALGVSAVTVESDFFTAVDDLNNKEEDAGSGHMGEQGFASALFYTYVCISRDLLVENLGGNEELAKRTIAALTETALTVSPTGKQNSFASRAYATYALAEVGQKQPRSLAAAFFQPVRDTDQIPAAITRLKQQRASFDSVYGNCADDYRELNVQEGTGSLAELLAFVSQ
>CP025243.1|QAZ27481.1|1019483_1020086_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MLNSNTAVLCRILHPDAQKALLDWFATLSERYECKDGKRVNGRAWRAELKRMAPPYGVMICEGHDALRQALLKHMRLQPLDEMALALFVSVAVHIKSHKANISFAAQLGEKLKGSTSCVSGLRFERLQKASDPETFCQLLIQAVKIRGTEGVNVLSLADGIFLWMEEWQRRENHQPEFRNPFERNCIRWANEYLSTSRGK
>CP025243.1|QAZ27480.1|1017931_1019467_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDLTKEKWLPVIFSNGDKKKISLRDLLDNRIQDLAYPRADFQGAAWQMLIGILQCTVAPEDKEEWADIWHESIEFEQWEKALNTISLALQFGEQKPSFLQSFDPLDSEYGSIAGLLVDAPGGNALKLNKDHFVKRGNVEQICPHCAAIALFAIQTNSPAGGAGYRVGMRGGGPLTTLVVPQEEDKYPLWKKLWLNVLPQEEPPNVTQHPLIFPWLAPTKTSEKAGNVVTPDNAHPLQAYWGMPRRIELDFTHTVAGICDLCGEHHESLLLQMCSKNYGVQYDSWLHPFSPYRQALKDPSAPWLAFKGQPGGSSYKDWLGLMLNREDKFNKMQPAKVVRAAGQRNKMSLWCFAWDMDKAKVRCWYQHRIPLISVLHEEQFLAALNTVLVLASESLSLLRNALKSAKFDCPKEAKMDFSMVDIAFWQETEPAFRTLQEALAVDPLRQDTQTRHAVSQWEAELAHYLFHVFDRDALTNPDCPDDILQRQLTARQDLASSYRKHKARKDVLALVE
>CP025243.1|QAZ31212.1|1013537_1014491_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYMLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLV
>CP025243.1|QAZ27479.1|1013213_1013456_-|hypothetical-protein
MLLGTHSLAAFKQLELFWVYDQFKIRLPAGFFIAASIIIPRKDNHPSCSPHSRFSPKNRVSSSAMPGSHLRVVCISPTDR
>CP025243.1|QAZ27478.1|1012590_1013325_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNDINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDIHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP025243.1|QAZ27487.1|1025532_1026579_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP025243.1|QAZ27488.1|1026829_1027738_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP025243.1|QAZ27489.1|1027747_1029187_+|sulfate-adenylyltransferase
MNTILAQQIANEGGVEAWMMAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTEKRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWHSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP025243.1|QAZ27490.1|1029173_1029779_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP025243.1|QAZ27491.1|1029796_1030153_+|DUF3561-domain-containing-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP025243.1|QAZ27492.1|1030343_1030655_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP025243.1|QAZ27493.1|1030673_1031384_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISPGDHRFAQLPLADHPQITVVDGGNERADSVLAGLQAVAEAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLHDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP025243.1|QAZ27494.1|1031383_1031863_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDDVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP025243.1|QAZ27495.1|1031859_1032909_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALHWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP025243.1|QAZ27496.1|1032889_1033651_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: CP025243_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP025243_3

3013789-3013898

Orphan

Consensus_repeat	Method
TTTTCGGGGATAACTATCCCCGTTTTC	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP025243_3

>merge|CP025243|3|3013789-3013898|CRISPRCasFinder
TTTTCGGGGATGCCCTTCCCTCTTTTCGGGGATAACTATCCCCGTTTTCAGGGATGGCTGAATGGGGTAAAACGCTATCCCTGTTTTCAGGGATAACTATCCCCGTTTTC

>CP025243|3|3|3013789-3013898|CRISPRCasFinder
TTTTCGGGGATGCCCTTCCCTCTTTTC	GGGGATAACTATCCCCGTTTTCAGGGATGGCTGAATGGGGTAAAACGCTATCCCTG
TTTTCAGGGATAACTATCCCCGTTTTC

Protein	Signature genes	Signature genes Name	Protein_function
CP025243.1\|QAZ29440.1\|3016466_3019352_+\|exodeoxyribonuclease	unknown	unknown	gnl\|CDD\|236615
CP025243.1\|QAZ29424.1\|3009110_3009257_-\|hypothetical-protein	unknown	unknown	unknown
CP025243.1\|QAZ29439.1\|3016040_3016340_+\|DNA-breaking-rejoining-protein	unknown	unknown	unknown
CP025243.1\|QAZ29431.1\|3011984_3012296_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|379401
CP025243.1\|QAZ29433.1\|3012650_3013400_-\|DNA-replication-protein-DnaC	unknown	unknown	gnl\|CDD\|183482
CP025243.1\|QAZ29442.1\|3020514_3020754_+\|DUF4060-domain-containing-protein	unknown	unknown	gnl\|CDD\|372542
CP025243.1\|QAZ29436.1\|3015147_3015558_+\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|182039
CP025243.1\|QAZ29443.1\|3020794_3021043_+\|excisionase	unknown	unknown	gnl\|CDD\|369087
CP025243.1\|QAZ29441.1\|3019314_3020472_+\|enterohemolysin	unknown	unknown	gnl\|CDD\|367688
CP025243.1\|QAZ29429.1\|3011091_3011325_-\|DinI-family-protein	unknown	unknown	gnl\|CDD\|368780
CP025243.1\|QAZ29434.1\|3014448_3014823_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|336083
CP025243.1\|QAZ29430.1\|3011616_3011907_-\|hypothetical-protein	unknown	unknown	unknown
CP025243.1\|QAZ29427.1\|3010073_3010676_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|369209
CP025243.1\|QAZ29426.1\|3009867_3010074_-\|hypothetical-protein	unknown	unknown	unknown
CP025243.1\|QAZ29435.1\|3014788_3015028_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|374243
CP025243.1\|QAZ29438.1\|3015860_3016019_+\|hypothetical-protein	unknown	unknown	unknown
CP025243.1\|QAZ29432.1\|3012292_3012640_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|310626
CP025243.1\|QAZ29428.1\|3010758_3010980_-\|hypothetical-protein	unknown	unknown	unknown
CP025243.1\|QAZ29437.1\|3015607_3015868_+\|hypothetical-protein	unknown	unknown	unknown
CP025243.1\|QAZ29425.1\|3009253_3009865_-\|protein-NinG	unknown	unknown	gnl\|CDD\|368603

Protein	Function_ID	Function_description	E-value
CP025243.1\|QAZ29440.1\|3016466_3019352_+\|exodeoxyribonuclease	gnl\|CDD\|236615	PRK09709, PRK09709, exodeoxyribonuclease VIII.	2.06321e-119
CP025243.1\|QAZ29431.1\|3011984_3012296_-\|hypothetical-protein	gnl\|CDD\|379401	pfam13935, Ead_Ea22, Ead/Ea22-like protein. This family contains phage proteins and bacterial proteins that are likely to represent integrated phage proteins. This family includes the Lambda phage Ea22 early protein as well as the Bacteriophage P22 Ead protein.	7.866e-21
CP025243.1\|QAZ29433.1\|3012650_3013400_-\|DNA-replication-protein-DnaC	gnl\|CDD\|183482	PRK12377, PRK12377, putative replication protein; Provisional.	5.94474e-166
CP025243.1\|QAZ29442.1\|3020514_3020754_+\|DUF4060-domain-containing-protein	gnl\|CDD\|372542	pfam13269, DUF4060, Protein of unknown function (DUF4060). This family of proteins is functionally uncharacterized. This family of proteins is found in bacteria. Proteins in this family are approximately 80 amino acids in length. There are two conserved sequence motifs: VEVV and SYVAT.	1.50161e-33
CP025243.1\|QAZ29436.1\|3015147_3015558_+\|transcriptional-regulator	gnl\|CDD\|182039	PRK09706, PRK09706, transcriptional repressor DicA; Reviewed.	2.07141e-08
CP025243.1\|QAZ29443.1\|3020794_3021043_+\|excisionase	gnl\|CDD\|369087	pfam06806, DUF1233, Putative excisionase (DUF1233). This family consists of several putative phage excisionase proteins of around 80 residues in length.	3.82484e-37
CP025243.1\|QAZ29441.1\|3019314_3020472_+\|enterohemolysin	gnl\|CDD\|367688	pfam03837, RecT, RecT family. The DNA single-strand annealing proteins (SSAPs), such as RecT, Red-beta, ERF and Rad52, function in RecA-dependent and RecA-independent DNA recombination pathways. This family includes proteins related to RecT.	9.67616e-35
CP025243.1\|QAZ29429.1\|3011091_3011325_-\|DinI-family-protein	gnl\|CDD\|368780	pfam06183, DinI, DinI-like family. This family of short proteins includes DNA-damage-inducible protein I (DinI) and related proteins. The SOS response, a set of cellular phenomena exhibited by eubacteria, is initiated by various causes that include DNA damage-induced replication arrest, and is positively regulated by the co- protease activity of RecA. Escherichia coli DinI, a LexA-regulated SOS gene product, shuts off the initiation of the SOS response when overexpressed in vivo. Biochemical and genetic studies indicated that DinI physically interacts with RecA to inhibit its co-protease activity. The structure of DinI is known.	9.70149e-27
CP025243.1\|QAZ29434.1\|3014448_3014823_-\|hypothetical-protein	gnl\|CDD\|336083	pfam05269, Phage_CII, Bacteriophage CII protein. This family consists of several phage CII regulatory proteins. CII plays a key role in the lysis-lysogeny decision in bacteriophage lambda and related phages.	0.000504381
CP025243.1\|QAZ29427.1\|3010073_3010676_-\|hypothetical-protein	gnl\|CDD\|369209	pfam07105, DUF1367, Protein of unknown function (DUF1367). This family consists of several highly conserved, hypothetical phage proteins of around 200 residues in length. The function of this family is unknown. Some proteins are annotated as IrsA (intracellular response to stress).	1.12791e-114
CP025243.1\|QAZ29435.1\|3014788_3015028_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|374243	pfam15943, YdaS_antitoxin, Putative antitoxin of bacterial toxin-antitoxin system, YdaS/YdaT. YdaS_antitoxin is a family of putative bacterial antitoxins, neutralising the toxin YdaT, family pfam06254.	0.00013906
CP025243.1\|QAZ29432.1\|3012292_3012640_-\|DNA-binding-protein	gnl\|CDD\|310626	pfam06163, DUF977, Bacterial protein of unknown function (DUF977). This family consists of several hypothetical bacterial proteins from Escherichia coli and Salmonella typhi. The function of this family is unknown.	4.04244e-58
CP025243.1\|QAZ29425.1\|3009253_3009865_-\|protein-NinG	gnl\|CDD\|368603	pfam05766, NinG, Bacteriophage Lambda NinG protein. NinG or Rap is involved in recombination. Rap (recombination adept with plasmid) increases lambda-by-plasmid recombination catalyzed by Escherichia coli's RecBCD pathway.	5.02649e-83

>CP025243.1|QAZ29433.1|3012650_3013400_-|DNA-replication-protein-DnaC
MKNVIGTGSALDRLKRIIPASVQPKFSTADEWRAWQEAEGRKRSEELDRMNQKSRTEKIFGRSGIQDLHRSCTFANYEVSGEGQRKAYTMAKSYAQNFGSGFASFVFSGGPGTGKNHLAAAIGNHLLAGGHSVLVVTIPDLMLRVRECYDGGQSEASLLDDLCKVDLLVLDEVGIQRGSSGEKVILNQVIDRRLSSMRPVGVLTNLNHEGLLDSLGARVIDRLQMDGGMWVNFDWESYRKNVSHLRIVK
>CP025243.1|QAZ29432.1|3012292_3012640_-|DNA-binding-protein
MARPKTQSERMIILERIIGLVKEQGRITTNDVVAIFGVHRTTAEKYLRIALERGGFIRHGRCGIFRDQRAVIDYDLRRYSSSQVTGFSALPVLEKSPVMQVYGASKMSINKGGAQ
>CP025243.1|QAZ29431.1|3011984_3012296_-|hypothetical-protein
MSNIDKRALREVAERATPGNWRRTSSLFNGITVTPFSLCGEEVTLAHTVEKRDAEFIAAANPATVLALLDVLYEFGEDEVAISEYVTNLEDALRVAAAPQQEE
>CP025243.1|QAZ29430.1|3011616_3011907_-|hypothetical-protein
MNYEDKLMYQRMIFEEGKEPRLYSSQHDSKFIPISNNNGKVQKVPVMEFKDTRGDVFYAYNYAYSGKKPSNDEIYKAIDELKPIGEKFEMSKTISD
>CP025243.1|QAZ29429.1|3011091_3011325_-|DinI-family-protein
MRIELVISRAKQLPEGAVPALEKELITRLQNQYENCNLTIRRGSQDGLSIVGAADGDKKRIQSILQETWESADDWFY
>CP025243.1|QAZ29428.1|3010758_3010980_-|hypothetical-protein
MAEGVLSDLADNLRVTITDAKGIELLSFRLASGDRYILSTQNGSVTNRKLSRDDLYWSKDTIMEVVREMGSNN
>CP025243.1|QAZ29427.1|3010073_3010676_-|hypothetical-protein
MAHELQLIKQSSGILIPATPETSEILQSKIKLGAVLVAEFRQVRNPAFHRRFFALLNLGFEYWEPTGGTISANERKLVNGYAKFLAAYGGNESALLDAAEQYLEQIANRRVTNGISLCKSFDAYRAWVTVEAGHYDAIQLPDGTLRKHPRSIAFSSMDEVEFQQLYKSALDVLWRWILSRTFRTQREAENAAAQLMSFAG
>CP025243.1|QAZ29426.1|3009867_3010074_-|hypothetical-protein
MAMKYSWFHHHDCTTEQADTLISDYQKRGVRTEKSLNPDFITWTVSAKLPEYAHRVRTPKSLRQKVWG
>CP025243.1|QAZ29425.1|3009253_3009865_-|protein-NinG
MAKLPRRKCANKECRQWFHPIREGQIVCSYQCASAVGKEQTRKAREAAQRKAQSLQRAAEKKERAAWRQRKAAVKPLKHWIDLTQRAVNDICRETELAEGLGCISCGTKTAFAWHAGHYRSTAAAGHLRFTRFNIHLQCDVYNVYKSGNIEAYRAALVERYGEAAVLALENNNTPHRWTVEELKEIRLAALADLRALKKLEAA
>CP025243.1|QAZ29424.1|3009110_3009257_-|hypothetical-protein
MKPELIEILRMRWLRLRIYRYRGSFPVAYRILRNYVRIEAKREHRNES
>CP025243.1|QAZ29434.1|3014448_3014823_-|hypothetical-protein
MAYQAKRHQPNNHRGYLPMENAIARKLDPPEINPIEIESVLLNRLASVGQKSYAEHMGISESTVSRRKAEGYFCNMAKELAFLGIQAAPPEAVLVSRNYLTAVEILADAGLKAERARPDALGWD
>CP025243.1|QAZ29435.1|3014788_3015028_-|helix-turn-helix-domain-containing-protein
MDNQLKIKISNHMTQMSIGEHFGISSQAVGKWLRKGVIPPRRILPLCEILEWKVTPHEIDPAAYPNPTDGLPSQEASAK
>CP025243.1|QAZ29436.1|3015147_3015558_+|transcriptional-regulator
MNKNLHPIFAKRIQQVLDENGWSMADLSRRVMLSHTSVRKWASGTSVASGERLKRLSAVTGRPEYWFFMEPGDESEGERAEPKPRVLDEKEETLLSLFNQLPEAEKLRVILHTKAVLQEMDLLKNNVFDLINDLKK
>CP025243.1|QAZ29437.1|3015607_3015868_+|hypothetical-protein
MLQNRTFSCTFCFTNRTFGFIVSFIDNKRIVVRCKTFRWPAIRQTRVRMIDFARRPARQQAVPLNRIEVLIRRLCYLLAQKGDPDA
>CP025243.1|QAZ29438.1|3015860_3016019_+|hypothetical-protein
MLKQCGYCRKSIDEGKEVKNTLLYRNGSQLASKEKEYCSRQCAEYDQMAHES
>CP025243.1|QAZ29439.1|3016040_3016340_+|DNA-breaking-rejoining-protein
MKNSPLIWRGFIHPEFKTGEIMEIVKIEMNLKAVNKSIALFNCENLDGGYVLGKFDSPHCAVKAISLLTVKVSDGEQAGFGNYRSYKLDYSEKFYQTIH
>CP025243.1|QAZ29440.1|3016466_3019352_+|exodeoxyribonuclease
MSGTNPVFLVRKAKKSSGQKDAVLWCSDDFEAANATLDYLLIKSGAKLKDYFKAVATNFPVVNELPPEGELSLTFCDYYQLAKDNMTWTQIPGVTLPSSEAAAAARQHIVDGVDTETGEVLEDHTENFGNESNSPAQATAPAPELTVVATMPLRHRVLAQYIGEGEYLYHVDASQKKEILRLEMDTDNSYVQNLLLAAENVEAFKKAIEHDIHKIVNAVKKVFPVDGKTPELATVIQFLKTWFETEHIDRGLLVKEWAKGNRVSAIQRTESGANAGGGNKTDRNPDYEHTLDTLDVEIAMATLPMDFNIYELPGSVYRRAKEIVKKKESPFKEWSAALRATPGILDYSRAAIFALIRSAHPEFYHYPGRLQGYINANLTETDHENPTEEALTAARHTPEKDAVEEANRQLAAARGEYVEGISDPNDPKWVKTGTSQPTTEPELVKNVGNGIFDVSALMQNSSTHGTETNPETTSNVQVQKADSDEKQAGDAVQAGEDDLGTGKEAVTVENQNQAEAQQNVPESQQEEPEAAWPEYFEPGRYEGVPNEVYHAANGISSTQVKDARVSLMYFNARHVEKTIVKERSPVLDMGNLVHALALQPENLEAEFSVEPEIPEGAFTTTATLREFIDAHNASLPALLSADDIKALLEEYNATLPSQMPLGASVDETYASYEQLPEEFQRIENGTKHTATAMKACIKEYNVTLPAPVKTSGSRDALLEQLAIINPDLVAQEAQKSSPLKVSGTKADLIQAVKSVNPAVVFADELLDAWRENTEGKVLVTRQQLSTALNIQKALLEHPTAGKLLTHPSRAVEVSYFGIDEETGLEVRVRPDLELDMGGLRIGADLKTISMWNIKQEGLRAKLHREIIDRDYHLSAAMYCETAALDQFFWIFVNKDENYHWVAIIEASTELLELGMLEYRKTMREIANGFDTGEWSAPITEDYTDELNDFDVRRLEALRVQA
>CP025243.1|QAZ29441.1|3019314_3020472_+|enterohemolysin
MCAALKRCAYRHKGKIMENTNIVTTEQQAPNTISASNAIFNVQALGQLTAFANLMADSQVTVPAHLAGKPADCMAIVMQAMQWGMNPYAVAQKTHLVNGVLGYEAQLVNAVIASSSAIHGRFHYRYGGDWERCTRTQEITRDKNGKNGKYTVTERVRGWTDEDEIGLFVQVGAILRGESEITWGEPLYLSGVVTRNSPLWVSNPKQQIAYLGVKYWARLYCPEVILGVYSPDEVEQREEREINPAPVQRMSVQEITSEVSTRTSAQESAANVDAVADDLRERIDTASSVDQAKAIRADIESQKALLGTALFTELKNKAVKRYYQVDAQNKVEAVINSIPNPGEPEAAEMFAKAESTLGAAKRHLGDELHDKYRVTLDDMKPEYIG
>CP025243.1|QAZ29442.1|3020514_3020754_+|DUF4060-domain-containing-protein
MRLINRSKQSPLGRRACDVALAAHHEKFGDYGRQKHVTNYTVVVDGVKVPVEVVNRATSYVATAMIGVRKLRNLPAQAN
>CP025243.1|QAZ29443.1|3020794_3021043_+|excisionase
MSNIIQLTPNKWVSEKVLIAVTGLKPGTITRARKESWMLGREYLHISPDGNPKPSSECIYNREAVDQWIEAQKKNQPGAKTT

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP025243_3	3.1\|3013816\|56\|CP025243\|CRISPRCasFinder	3013816-3013871	56	JQ288021	Salmonella phage SPN3UB, complete genome	36120-36175	0	1.0
CP025243_3	3.1\|3013816\|56\|CP025243\|CRISPRCasFinder	3013816-3013871	56	NC_010393	Phage Gifsy-2, complete genome	8573-8628	0	1.0
CP025243_3	3.1\|3013816\|56\|CP025243\|CRISPRCasFinder	3013816-3013871	56	NC_010392	Phage Gifsy-1, complete genome	39722-39777	0	1.0
CP025243_2	2.26\|1025457\|33\|CP025243\|PILER-CR	1025457-1025489	33	NC_004313	Salmonella phage ST64B, complete genome	31960-31992	1	0.97
CP025243_2	2.26\|1025457\|33\|CP025243\|PILER-CR	1025457-1025489	33	KU927493	Salmonella phage 118970_sal3, complete genome	69572-69604	1	0.97
CP025243_2	2.26\|1025457\|33\|CP025243\|PILER-CR	1025457-1025489	33	AY055382	Salmonella typhimurium phage ST64B complete sequence	31960-31992	1	0.97
CP025243_2	2.52\|1025458\|32\|CP025243\|CRISPRCasFinder,CRT	1025458-1025489	32	NC_004313	Salmonella phage ST64B, complete genome	31961-31992	1	0.969
CP025243_2	2.52\|1025458\|32\|CP025243\|CRISPRCasFinder,CRT	1025458-1025489	32	KU927493	Salmonella phage 118970_sal3, complete genome	69573-69604	1	0.969
CP025243_2	2.52\|1025458\|32\|CP025243\|CRISPRCasFinder,CRT	1025458-1025489	32	AY055382	Salmonella typhimurium phage ST64B complete sequence	31961-31992	1	0.969
CP025243_1	1.20\|1007175\|31\|CP025243\|CRT	1007175-1007205	31	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90793-90823	4	0.871
CP025243_1	1.20\|1007175\|31\|CP025243\|CRT	1007175-1007205	31	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112082	4	0.871
CP025243_1	1.20\|1007175\|31\|CP025243\|CRT	1007175-1007205	31	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225001	4	0.871
CP025243_1	1.19\|1007175\|32\|CP025243\|CRISPRCasFinder	1007175-1007206	32	NZ_CP024424	Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence	112052-112083	5	0.844
CP025243_1	1.19\|1007175\|32\|CP025243\|CRISPRCasFinder	1007175-1007206	32	NZ_CP020440	Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence	224971-225002	5	0.844
CP025243_1	1.19\|1007175\|32\|CP025243\|CRISPRCasFinder	1007175-1007206	32	NZ_CP044082	Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence	90792-90823	5	0.844
CP025243_1	1.20\|1007175\|31\|CP025243\|CRT	1007175-1007205	31	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271401-271431	5	0.839
CP025243_2	2.36\|1024482\|32\|CP025243\|CRISPRCasFinder,CRT	1024482-1024513	32	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10362	5	0.844
CP025243_1	1.13\|1006810\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006810-1006841	32	MK448383	Streptococcus satellite phage Javan248, complete genome	4976-5007	6	0.812
CP025243_1	1.18\|1007115\|31\|CP025243\|CRISPRCasFinder,CRT	1007115-1007145	31	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33598	6	0.806
CP025243_1	1.19\|1007175\|32\|CP025243\|CRISPRCasFinder	1007175-1007206	32	NZ_CP031080	Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence	271400-271431	6	0.812
CP025243_2	2.10\|1024481\|33\|CP025243\|PILER-CR	1024481-1024513	33	MK448237	Klebsiella phage ST974-OXA48phi18.2, complete genome	10331-10363	6	0.818
CP025243_2	2.32\|1024238\|32\|CP025243\|CRISPRCasFinder,CRT	1024238-1024269	32	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30992	6	0.812
CP025243_2	2.36\|1024482\|32\|CP025243\|CRISPRCasFinder,CRT	1024482-1024513	32	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5482	6	0.812
CP025243_1	1.2\|1006139\|32\|CP025243\|CRISPRCasFinder,CRT	1006139-1006170	32	NZ_CP024891	Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence	51303-51334	7	0.781
CP025243_1	1.15\|1006932\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006932-1006963	32	NZ_CP016366	Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence	126588-126619	7	0.781
CP025243_1	1.15\|1006932\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006932-1006963	32	NZ_CP010602	Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence	115384-115415	7	0.781
CP025243_1	1.15\|1006932\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006932-1006963	32	NZ_CP010769	Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence	133543-133574	7	0.781
CP025243_1	1.15\|1006932\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006932-1006963	32	NZ_CP010708	Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence	115381-115412	7	0.781
CP025243_1	1.15\|1006932\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006932-1006963	32	NZ_CP010737	Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence	183735-183766	7	0.781
CP025243_1	1.19\|1007175\|32\|CP025243\|CRISPRCasFinder	1007175-1007206	32	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343727-343758	7	0.781
CP025243_1	1.19\|1007175\|32\|CP025243\|CRISPRCasFinder	1007175-1007206	32	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654433	7	0.781
CP025243_1	1.20\|1007175\|31\|CP025243\|CRT	1007175-1007205	31	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052296-2052326	7	0.774
CP025243_1	1.20\|1007175\|31\|CP025243\|CRT	1007175-1007205	31	NC_008826	Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence	343728-343758	7	0.774
CP025243_1	1.21\|1007115\|32\|CP025243\|PILER-CR	1007115-1007146	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	4747-4778	7	0.781
CP025243_1	1.21\|1007115\|32\|CP025243\|PILER-CR	1007115-1007146	32	NZ_LR215032	Mycoplasma gallopavonis strain NCTC10186 plasmid 2	389262-389293	7	0.781
CP025243_1	1.21\|1007115\|32\|CP025243\|PILER-CR	1007115-1007146	32	AP014010	Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, * SEQUENCING IN PROGRESS *	33568-33599	7	0.781
CP025243_2	2.6\|1024237\|33\|CP025243\|PILER-CR	1024237-1024269	33	MH319741	Marine virus AG-345-E15 Ga0172270_11 genomic sequence	30961-30993	7	0.788
CP025243_2	2.10\|1024481\|33\|CP025243\|PILER-CR	1024481-1024513	33	MK448230	Klebsiella phage ST16-OXA48phi5.2, complete genome	5451-5483	7	0.788
CP025243_2	2.21\|1025152\|33\|CP025243\|PILER-CR	1025152-1025184	33	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304163-304195	7	0.788
CP025243_2	2.32\|1024238\|32\|CP025243\|CRISPRCasFinder,CRT	1024238-1024269	32	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294661	7	0.781
CP025243_2	2.47\|1025153\|32\|CP025243\|CRISPRCasFinder,CRT	1025153-1025184	32	NZ_CP041417	Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence	304164-304195	7	0.781
CP025243_2	2.47\|1025153\|32\|CP025243\|CRISPRCasFinder,CRT	1025153-1025184	32	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194537	7	0.781
CP025243_1	1.8\|1006505\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006505-1006536	32	CP047389	Agrobacterium sp. CGMCC 11546 plasmid pA	272606-272637	8	0.75
CP025243_1	1.15\|1006932\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006932-1006963	32	NZ_CP054613	Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence	276525-276556	8	0.75
CP025243_1	1.15\|1006932\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006932-1006963	32	AY639599	Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds	1396-1427	8	0.75
CP025243_1	1.16\|1006993\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006993-1007024	32	NC_019364	Sulfitobacter guttiformis plasmid pSD118, complete sequence	10703-10734	8	0.75
CP025243_1	1.19\|1007175\|32\|CP025243\|CRISPRCasFinder	1007175-1007206	32	NZ_CP029452	Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence	2052295-2052326	8	0.75
CP025243_1	1.20\|1007175\|31\|CP025243\|CRT	1007175-1007205	31	NC_009621	Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence	654402-654432	8	0.742
CP025243_2	2.5\|1024176\|33\|CP025243\|PILER-CR	1024176-1024208	33	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888442	8	0.758
CP025243_2	2.5\|1024176\|33\|CP025243\|PILER-CR	1024176-1024208	33	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888440	8	0.758
CP025243_2	2.6\|1024237\|33\|CP025243\|PILER-CR	1024237-1024269	33	NZ_CP045273	Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence	294630-294662	8	0.758
CP025243_2	2.21\|1025152\|33\|CP025243\|PILER-CR	1025152-1025184	33	NZ_LT984809	Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence	194506-194538	8	0.758
CP025243_2	2.47\|1025153\|32\|CP025243\|CRISPRCasFinder,CRT	1025153-1025184	32	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756038-1756069	8	0.75
CP025243_2	2.47\|1025153\|32\|CP025243\|CRISPRCasFinder,CRT	1025153-1025184	32	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879041	8	0.75
CP025243_1	1.10\|1006627\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006627-1006658	32	MN693011	Marine virus AFVG_117M58, complete genome	34901-34932	9	0.719
CP025243_1	1.13\|1006810\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006810-1006841	32	MK250029	Prevotella phage Lak-C1, complete genome	220147-220178	9	0.719
CP025243_1	1.13\|1006810\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006810-1006841	32	MK250016	Prevotella phage Lak-A1, complete genome	256365-256396	9	0.719
CP025243_1	1.13\|1006810\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006810-1006841	32	MK250019	Prevotella phage Lak-A2, complete genome	177499-177530	9	0.719
CP025243_1	1.18\|1007115\|31\|CP025243\|CRISPRCasFinder,CRT	1007115-1007145	31	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72061	9	0.71
CP025243_1	1.18\|1007115\|31\|CP025243\|CRISPRCasFinder,CRT	1007115-1007145	31	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3414-3444	9	0.71
CP025243_1	1.18\|1007115\|31\|CP025243\|CRISPRCasFinder,CRT	1007115-1007145	31	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232723-232753	9	0.71
CP025243_1	1.18\|1007115\|31\|CP025243\|CRISPRCasFinder,CRT	1007115-1007145	31	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129920	9	0.71
CP025243_1	1.18\|1007115\|31\|CP025243\|CRISPRCasFinder,CRT	1007115-1007145	31	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109942-109972	9	0.71
CP025243_1	1.18\|1007115\|31\|CP025243\|CRISPRCasFinder,CRT	1007115-1007145	31	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148698-148728	9	0.71
CP025243_1	1.18\|1007115\|31\|CP025243\|CRISPRCasFinder,CRT	1007115-1007145	31	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3414-3444	9	0.71
CP025243_2	2.2\|1023993\|33\|CP025243\|PILER-CR	1023993-1024025	33	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	616323-616355	9	0.727
CP025243_2	2.21\|1025152\|33\|CP025243\|PILER-CR	1025152-1025184	33	NZ_CP049157	Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence	1756037-1756069	9	0.727
CP025243_2	2.21\|1025152\|33\|CP025243\|PILER-CR	1025152-1025184	33	NZ_CP049317	Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence	1879010-1879042	9	0.727
CP025243_2	2.27\|1023933\|32\|CP025243\|CRISPRCasFinder,CRT	1023933-1023964	32	NZ_CP047227	Moraxella osloensis strain YV1 plasmid p1, complete sequence	115808-115839	9	0.719
CP025243_2	2.28\|1023994\|32\|CP025243\|CRISPRCasFinder,CRT	1023994-1024025	32	NZ_CP032695	Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence	616323-616354	9	0.719
CP025243_2	2.28\|1023994\|32\|CP025243\|CRISPRCasFinder,CRT	1023994-1024025	32	NC_024369	Vibrio phage X29, complete genome	16391-16422	9	0.719
CP025243_2	2.28\|1023994\|32\|CP025243\|CRISPRCasFinder,CRT	1023994-1024025	32	MK575466	Vibrio phage Rostov 7, complete genome	37606-37637	9	0.719
CP025243_2	2.28\|1023994\|32\|CP025243\|CRISPRCasFinder,CRT	1023994-1024025	32	KJ545483	Vibrio phage phi 2, complete genome	16391-16422	9	0.719
CP025243_2	2.32\|1024238\|32\|CP025243\|CRISPRCasFinder,CRT	1024238-1024269	32	MN693555	Marine virus AFVG_25M96, complete genome	8842-8873	9	0.719
CP025243_2	2.32\|1024238\|32\|CP025243\|CRISPRCasFinder,CRT	1024238-1024269	32	MN693550	Marine virus AFVG_25M93, complete genome	10730-10761	9	0.719
CP025243_2	2.32\|1024238\|32\|CP025243\|CRISPRCasFinder,CRT	1024238-1024269	32	MN693245	Marine virus AFVG_25M69, complete genome	11115-11146	9	0.719
CP025243_2	2.32\|1024238\|32\|CP025243\|CRISPRCasFinder,CRT	1024238-1024269	32	MN693208	Marine virus AFVG_25M383, complete genome	25882-25913	9	0.719
CP025243_2	2.32\|1024238\|32\|CP025243\|CRISPRCasFinder,CRT	1024238-1024269	32	MN693436	Marine virus AFVG_25M57, complete genome	28024-28055	9	0.719
CP025243_2	2.32\|1024238\|32\|CP025243\|CRISPRCasFinder,CRT	1024238-1024269	32	MN693515	Marine virus AFVG_25M70, complete genome	10467-10498	9	0.719
CP025243_2	2.32\|1024238\|32\|CP025243\|CRISPRCasFinder,CRT	1024238-1024269	32	MN693320	Marine virus AFVG_25M58, complete genome	28018-28049	9	0.719
CP025243_2	2.32\|1024238\|32\|CP025243\|CRISPRCasFinder,CRT	1024238-1024269	32	MN693286	Marine virus AFVG_25M92, complete genome	9636-9667	9	0.719
CP025243_2	2.32\|1024238\|32\|CP025243\|CRISPRCasFinder,CRT	1024238-1024269	32	MN693549	Marine virus AFVG_25M89, complete genome	11533-11564	9	0.719
CP025243_2	2.38\|1024604\|32\|CP025243\|CRISPRCasFinder,CRT	1024604-1024635	32	NZ_CP013139	Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence	213856-213887	9	0.719
CP025243_2	2.52\|1025458\|32\|CP025243\|CRISPRCasFinder,CRT	1025458-1025489	32	NZ_CP015221	Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence	111308-111339	9	0.719
CP025243_1	1.6\|1006383\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006383-1006414	32	MG945729	UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome	1763-1794	10	0.688
CP025243_1	1.9\|1006566\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006566-1006597	32	MK449008	Streptococcus phage Javan84, complete genome	18935-18966	10	0.688
CP025243_1	1.9\|1006566\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006566-1006597	32	MK448832	Streptococcus phage Javan85, complete genome	18935-18966	10	0.688
CP025243_1	1.16\|1006993\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1006993-1007024	32	AP022645	Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence	62931-62962	10	0.688
CP025243_1	1.17\|1007054\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1007054-1007085	32	NZ_CP024657	Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence	129540-129571	10	0.688
CP025243_1	1.17\|1007054\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1007054-1007085	32	NZ_CP015354	Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence	111984-112015	10	0.688
CP025243_1	1.17\|1007054\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1007054-1007085	32	NC_047948	Staphylococcus phage phiSA_BS2, complete genome	46996-47027	10	0.688
CP025243_1	1.17\|1007054\|32\|CP025243\|CRISPRCasFinder,CRT,PILER-CR	1007054-1007085	32	MH078572	Staphylococcus phage phiSA_BS1, complete genome	1850-1881	10	0.688
CP025243_1	1.18\|1007115\|31\|CP025243\|CRISPRCasFinder,CRT	1007115-1007145	31	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78356-78386	10	0.677
CP025243_1	1.21\|1007115\|32\|CP025243\|PILER-CR	1007115-1007146	32	NC_011246	Borrelia recurrentis A1 plasmid pl124, complete sequence	78355-78386	10	0.688
CP025243_1	1.21\|1007115\|32\|CP025243\|PILER-CR	1007115-1007146	32	NZ_CP053971	Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence	72031-72062	10	0.688
CP025243_1	1.21\|1007115\|32\|CP025243\|PILER-CR	1007115-1007146	32	NZ_CP013278	Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence	3413-3444	10	0.688
CP025243_1	1.21\|1007115\|32\|CP025243\|PILER-CR	1007115-1007146	32	NC_018509	Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence	232722-232753	10	0.688
CP025243_1	1.21\|1007115\|32\|CP025243\|PILER-CR	1007115-1007146	32	NZ_CP039724	Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence	129890-129921	10	0.688
CP025243_1	1.21\|1007115\|32\|CP025243\|PILER-CR	1007115-1007146	32	NZ_CP051859	Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence	109941-109972	10	0.688
CP025243_1	1.21\|1007115\|32\|CP025243\|PILER-CR	1007115-1007146	32	NZ_CP009347	Bacillus thuringiensis HD1002 plasmid 3, complete sequence	148697-148728	10	0.688
CP025243_1	1.21\|1007115\|32\|CP025243\|PILER-CR	1007115-1007146	32	NZ_CP045025	Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence	3413-3444	10	0.688
CP025243_2	2.2\|1023993\|33\|CP025243\|PILER-CR	1023993-1024025	33	NC_024369	Vibrio phage X29, complete genome	16391-16423	10	0.697
CP025243_2	2.2\|1023993\|33\|CP025243\|PILER-CR	1023993-1024025	33	MK575466	Vibrio phage Rostov 7, complete genome	37606-37638	10	0.697
CP025243_2	2.2\|1023993\|33\|CP025243\|PILER-CR	1023993-1024025	33	KJ545483	Vibrio phage phi 2, complete genome	16391-16423	10	0.697
CP025243_2	2.31\|1024177\|32\|CP025243\|CRISPRCasFinder,CRT	1024177-1024208	32	NZ_CP021653	Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence	1888410-1888441	10	0.688
CP025243_2	2.31\|1024177\|32\|CP025243\|CRISPRCasFinder,CRT	1024177-1024208	32	NZ_CP012688	Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence	1888408-1888439	10	0.688
CP025243_2	2.37\|1024543\|32\|CP025243\|CRISPRCasFinder,CRT	1024543-1024574	32	MK047641	Phage NV21, complete genome	23610-23641	10	0.688
CP025243_2	2.39\|1024665\|32\|CP025243\|CRISPRCasFinder,CRT	1024665-1024696	32	NZ_CP015881	Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence	191710-191741	10	0.688
CP025243_2	2.39\|1024665\|32\|CP025243\|CRISPRCasFinder,CRT	1024665-1024696	32	NZ_CP030263	Ensifer adhaerens strain Corn53 plasmid AA, complete sequence	237223-237254	10	0.688
CP025243_2	2.47\|1025153\|32\|CP025243\|CRISPRCasFinder,CRT	1025153-1025184	32	NZ_CP021033	Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence	91874-91905	10	0.688

1. spacer 3.1|3013816|56|CP025243|CRISPRCasFinder matches to JQ288021 (Salmonella phage SPN3UB, complete genome) position: , mismatch: 0, identity: 1.0

ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	CRISPR spacer
ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	Protospacer
********************************************************

2. spacer 3.1|3013816|56|CP025243|CRISPRCasFinder matches to NC_010393 (Phage Gifsy-2, complete genome) position: , mismatch: 0, identity: 1.0

ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	CRISPR spacer
ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	Protospacer
********************************************************

3. spacer 3.1|3013816|56|CP025243|CRISPRCasFinder matches to NC_010392 (Phage Gifsy-1, complete genome) position: , mismatch: 0, identity: 1.0

ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	CRISPR spacer
ggggataactatccccgttttcagggatggctgaatggggtaaaacgctatccctg	Protospacer
********************************************************

4. spacer 2.26|1025457|33|CP025243|PILER-CR matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.97

gtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
gtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
*****************.***************

5. spacer 2.26|1025457|33|CP025243|PILER-CR matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.97

gtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
gtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
*****************.***************

6. spacer 2.26|1025457|33|CP025243|PILER-CR matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.97

gtaagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
gtaagttacgccagtgcaggcgtgttgctcatc	Protospacer
*****************.***************

7. spacer 2.52|1025458|32|CP025243|CRISPRCasFinder,CRT matches to NC_004313 (Salmonella phage ST64B, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

8. spacer 2.52|1025458|32|CP025243|CRISPRCasFinder,CRT matches to KU927493 (Salmonella phage 118970_sal3, complete genome) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

9. spacer 2.52|1025458|32|CP025243|CRISPRCasFinder,CRT matches to AY055382 (Salmonella typhimurium phage ST64B complete sequence) position: , mismatch: 1, identity: 0.969

taagttacgccagtgcgggcgtgttgctcatc	CRISPR spacer
taagttacgccagtgcaggcgtgttgctcatc	Protospacer
****************.***************

10. spacer 1.20|1007175|31|CP025243|CRT matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

11. spacer 1.20|1007175|31|CP025243|CRT matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

12. spacer 1.20|1007175|31|CP025243|CRT matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 4, identity: 0.871

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgc	Protospacer
*.**************.* ****** *****

13. spacer 1.19|1007175|32|CP025243|CRISPRCasFinder matches to NZ_CP024424 (Paracoccus yeei strain TT13 plasmid pTT13-2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

14. spacer 1.19|1007175|32|CP025243|CRISPRCasFinder matches to NZ_CP020440 (Paracoccus yeei strain FDAARGOS_252 plasmid unnamed2, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

15. spacer 1.19|1007175|32|CP025243|CRISPRCasFinder matches to NZ_CP044082 (Paracoccus yeei strain FDAARGOS_643 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.844

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gagatcgcgctggcggcctcatccg-tgccgca	Protospacer
*.**************.* ****** *****.

16. spacer 1.20|1007175|31|CP025243|CRT matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 5, identity: 0.839

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgc	Protospacer
 .**************.* ****** *****

17. spacer 2.36|1024482|32|CP025243|CRISPRCasFinder,CRT matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 5, identity: 0.844

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
ccaggcgatcgcatctgggtgcgggaggcctt	Protospacer
** ***********.***********..* **

18. spacer 1.13|1006810|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to MK448383 (Streptococcus satellite phage Javan248, complete genome) position: , mismatch: 6, identity: 0.812

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
tgaaaatcttctttcatagaaacgtatgtatt	Protospacer
*.**************** ** **** * .**

19. spacer 1.18|1007115|31|CP025243|CRISPRCasFinder,CRT matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 6, identity: 0.806

agcacaatcattattagatgaactt--tcatca	CRISPR spacer
aacacaagaattattagatgaacttggtgat--	Protospacer
*.*****  ****************  * **

20. spacer 1.19|1007175|32|CP025243|CRISPRCasFinder matches to NZ_CP031080 (Paracoccus yeei strain CCUG 32053 plasmid pYEE2, complete sequence) position: , mismatch: 6, identity: 0.812

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cagatcgcgctggcggcctcatccg-tgccgca	Protospacer
 .**************.* ****** *****.

21. spacer 2.10|1024481|33|CP025243|PILER-CR matches to MK448237 (Klebsiella phage ST974-OXA48phi18.2, complete genome) position: , mismatch: 6, identity: 0.818

gcctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
accaggcgatcgcatctgggtgcgggaggcctt	Protospacer
.** ***********.***********..* **

22. spacer 2.32|1024238|32|CP025243|CRISPRCasFinder,CRT matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 6, identity: 0.812

ggaataaaaatgaatttgagtcaact-ctataa	CRISPR spacer
ataataaaaaagtatttgagtcaactgatata-	Protospacer
. ******** * *************  ****

23. spacer 2.36|1024482|32|CP025243|CRISPRCasFinder,CRT matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 6, identity: 0.812

cctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
gtcggcgatcgcatctgggtgcgtgaaacatg	Protospacer
 ..***********.******** *******

24. spacer 1.2|1006139|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP024891 (Rhodococcus ruber strain YYL plasmid pYYL1.2, complete sequence) position: , mismatch: 7, identity: 0.781

cagtgcggcagcgcgcaatcgagacacgccat	CRISPR spacer
cggtgcgacagcgagcaatcgagacgggctct	Protospacer
*.*****.***** ***********. **. *

25. spacer 1.15|1006932|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP016366 (Phaeobacter porticola strain P97 plasmid pP97_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccgaaagcagataaaa	Protospacer
  ******* ********* ****** * .**

26. spacer 1.15|1006932|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010602 (Phaeobacter inhibens strain P83 plasmid pP83_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

27. spacer 1.15|1006932|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010769 (Phaeobacter piscinae strain P13 plasmid pP13_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

28. spacer 1.15|1006932|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010708 (Phaeobacter inhibens strain P66 plasmid pP66_c, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

29. spacer 1.15|1006932|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP010737 (Phaeobacter inhibens strain P72 plasmid pP72_b, complete sequence) position: , mismatch: 7, identity: 0.781

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
tggcaacagattcttaccacaagcaggcagaa	Protospacer
  ******* ********.******* . ***

30. spacer 1.19|1007175|32|CP025243|CRISPRCasFinder matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagtt	Protospacer
********* ********** *.**  *  **

31. spacer 1.19|1007175|32|CP025243|CRISPRCasFinder matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 7, identity: 0.781

gggatcgcgctggcggtcgcatccgttgccgt-	CRISPR spacer
cggctcgcgctggcggtcgcttcc-tcggcgcg	Protospacer
 ** **************** *** *.* **.

32. spacer 1.20|1007175|31|CP025243|CRT matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 7, identity: 0.774

gggatcgcgctggcggtcgcatccgttgccg	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggccc	Protospacer
 ** ******* ************ . ***

33. spacer 1.20|1007175|31|CP025243|CRT matches to NC_008826 (Methylibium petroleiphilum PM1 plasmid RPME01, complete sequence) position: , mismatch: 7, identity: 0.774

gggatcgcgctggcggtcgcatccgttgccg-	CRISPR spacer
gggatcgcggtggcggtcgc-ttcgaggaagt	Protospacer
********* ********** *.**  *  *

34. spacer 1.21|1007115|32|CP025243|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

35. spacer 1.21|1007115|32|CP025243|PILER-CR matches to NZ_LR215032 (Mycoplasma gallopavonis strain NCTC10186 plasmid 2) position: , mismatch: 7, identity: 0.781

agcac-aatcattattagatgaactttcatcaa	CRISPR spacer
-ttacgaaagatttttagatgaacttgcatcaa	Protospacer
  .** **  *** ************ ******

36. spacer 1.21|1007115|32|CP025243|PILER-CR matches to AP014010 (Uncultured Mediterranean phage uvMED isolate uvMED-CGF-C97-MedDCM-OCT-S27-C11, *** SEQUENCING IN PROGRESS ***) position: , mismatch: 7, identity: 0.781

agcacaatcattattagatgaactt--tcatcaa	CRISPR spacer
aacacaagaattattagatgaacttggtgatg--	Protospacer
*.*****  ****************  * **

37. spacer 2.6|1024237|33|CP025243|PILER-CR matches to MH319741 (Marine virus AG-345-E15 Ga0172270_11 genomic sequence) position: , mismatch: 7, identity: 0.788

gggaataaaaatgaatttgagtcaact-ctataa	CRISPR spacer
tataataaaaaagtatttgagtcaactgatata-	Protospacer
 . ******** * *************  ****

38. spacer 2.10|1024481|33|CP025243|PILER-CR matches to MK448230 (Klebsiella phage ST16-OXA48phi5.2, complete genome) position: , mismatch: 7, identity: 0.788

gcctggcgatcgcatttgggtgcgggaaacatt	CRISPR spacer
cgtcggcgatcgcatctgggtgcgtgaaacatg	Protospacer
  ..***********.******** *******

39. spacer 2.21|1025152|33|CP025243|PILER-CR matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.788

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
ggcgatgtatgccgcgacgattgaatccacgct	Protospacer
*********************.**.  *. .**

40. spacer 2.32|1024238|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 7, identity: 0.781

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
tgtataaaaatgaatttgaggtaactccctac	Protospacer
 * ***************** .*****. **

41. spacer 2.47|1025153|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP041417 (Escherichia coli strain STEC711 plasmid pSTEC711_1, complete sequence) position: , mismatch: 7, identity: 0.781

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gcgatgtatgccgcgacgattgaatccacgct	Protospacer
********************.**.  *. .**

42. spacer 2.47|1025153|32|CP025243|CRISPRCasFinder,CRT matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 7, identity: 0.781

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
accattcatgccgcgacgaacaagagcgaaca	Protospacer
.* ** .************ *.*********

43. spacer 1.8|1006505|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to CP047389 (Agrobacterium sp. CGMCC 11546 plasmid pA) position: , mismatch: 8, identity: 0.75

caataggacagccattcgagcgcccagagttt	CRISPR spacer
tcacaggacagctattcgagcgcccagtccgt	Protospacer
. *.********.**************  . *

44. spacer 1.15|1006932|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP054613 (Paenibacillus cellulosilyticus strain KACC 14175 plasmid unnamed4, complete sequence) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
ttgcaacagtttctttccgcatgcagctgctt	Protospacer
 ************** ***** ****.*

45. spacer 1.15|1006932|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to AY639599 (Bacteriophage TP Ogr (ogr) and putative protease genes, complete cds) position: , mismatch: 8, identity: 0.75

gtgcaacagtttcttaccgcaagcagtttgaa	CRISPR spacer
gttattcagtttctgaccgccagcagtttgtt	Protospacer
**    ******** ***** *********

46. spacer 1.16|1006993|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to NC_019364 (Sulfitobacter guttiformis plasmid pSD118, complete sequence) position: , mismatch: 8, identity: 0.75

atcatcgggattcattttgttgt--ccgggtggc	CRISPR spacer
gtcatcgtgatgcattttgttgtcccctaatg--	Protospacer
.****** *** ***********  ** ..**

47. spacer 1.19|1007175|32|CP025243|CRISPRCasFinder matches to NZ_CP029452 (Sinorhizobium fredii CCBAU 25509 plasmid pSF25509b, complete sequence) position: , mismatch: 8, identity: 0.75

gggatcgcgctggcggtcgcatccgttgccgt	CRISPR spacer
cggctcgcgctcgcggtcgcatcctcggcccg	Protospacer
 ** ******* ************ . ***

48. spacer 1.20|1007175|31|CP025243|CRT matches to NC_009621 (Sinorhizobium medicae WSM419 plasmid pSMED02, complete sequence) position: , mismatch: 8, identity: 0.742

gggatcgcgctggcggtcgcatccgttgccg	CRISPR spacer
cggctcgcgctggcggtcgcttcctcggcgc	Protospacer
 ** **************** *** . **

49. spacer 2.5|1024176|33|CP025243|PILER-CR matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

gcgc-ggggctggtattcgatacagacccggcta	CRISPR spacer
-cgctcgggctggtattcgattccgacccgcgcc	Protospacer
 ***  *************** * ******  .

50. spacer 2.5|1024176|33|CP025243|PILER-CR matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.758

gcgc-ggggctggtattcgatacagacccggcta	CRISPR spacer
-cgctcgggctggtattcgattccgacccgcgcc	Protospacer
 ***  *************** * ******  .

51. spacer 2.6|1024237|33|CP025243|PILER-CR matches to NZ_CP045273 (Bacillus megaterium strain FDU301 plasmid pFDU301A, complete sequence) position: , mismatch: 8, identity: 0.758

gggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttgtataaaaatgaatttgaggtaactccctac	Protospacer
  * ***************** .*****. **

52. spacer 2.21|1025152|33|CP025243|PILER-CR matches to NZ_LT984809 (Cupriavidus taiwanensis isolate Cupriavidus taiwanensis STM 8555 plasmid I, complete sequence) position: , mismatch: 8, identity: 0.758

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
caccattcatgccgcgacgaacaagagcgaaca	Protospacer
 .* ** .************ *.*********

53. spacer 2.47|1025153|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gaaccttatgccacgacgatcgagaacgaaca	Protospacer
* . . ******.************.*****

54. spacer 2.47|1025153|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 8, identity: 0.75

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
gaaccttatgccacgacgatcgagaacgaaca	Protospacer
* . . ******.************.*****

55. spacer 1.10|1006627|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to MN693011 (Marine virus AFVG_117M58, complete genome) position: , mismatch: 9, identity: 0.719

aactaacgtctatagctaaatgtagagaaaac	CRISPR spacer
taaaaggttctatagctaaaagtggagaaaat	Protospacer
 *  *.  ************ **.*******.

56. spacer 1.13|1006810|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to MK250029 (Prevotella phage Lak-C1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

57. spacer 1.13|1006810|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to MK250016 (Prevotella phage Lak-A1, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

58. spacer 1.13|1006810|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to MK250019 (Prevotella phage Lak-A2, complete genome) position: , mismatch: 9, identity: 0.719

taaaaatcttctttcatataaccgtaagggtt	CRISPR spacer
gtattatcttctttcacataacggtaagcaat	Protospacer
  *  ***********.***** ***** . *

59. spacer 1.18|1007115|31|CP025243|CRISPRCasFinder,CRT matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

60. spacer 1.18|1007115|31|CP025243|CRISPRCasFinder,CRT matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

61. spacer 1.18|1007115|31|CP025243|CRISPRCasFinder,CRT matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

62. spacer 1.18|1007115|31|CP025243|CRISPRCasFinder,CRT matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

63. spacer 1.18|1007115|31|CP025243|CRISPRCasFinder,CRT matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

64. spacer 1.18|1007115|31|CP025243|CRISPRCasFinder,CRT matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

65. spacer 1.18|1007115|31|CP025243|CRISPRCasFinder,CRT matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 9, identity: 0.71

agcacaatcattattagatgaactttcatca	CRISPR spacer
ccaacatgcattattagatgaacttttcttt	Protospacer
   ***  ******************. *.

66. spacer 2.2|1023993|33|CP025243|PILER-CR matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.727

gtgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
gccattggtcggattgtttgcgtgcggggccgg	Protospacer
*. . .* .****************** * ***

67. spacer 2.21|1025152|33|CP025243|PILER-CR matches to NZ_CP049157 (Caballeronia sp. SBC1 plasmid pSBC1_1, complete sequence) position: , mismatch: 9, identity: 0.727

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
tgaaccttatgccacgacgatcgagaacgaaca	Protospacer
 * . . ******.************.*****

68. spacer 2.21|1025152|33|CP025243|PILER-CR matches to NZ_CP049317 (Caballeronia sp. SBC2 plasmid pSBC2-1, complete sequence) position: , mismatch: 9, identity: 0.727

ggcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
tgaaccttatgccacgacgatcgagaacgaaca	Protospacer
 * . . ******.************.*****

69. spacer 2.27|1023933|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP047227 (Moraxella osloensis strain YV1 plasmid p1, complete sequence) position: , mismatch: 9, identity: 0.719

ctggaacggcagtatttaaaaggggttattga	CRISPR spacer
cgtaaacggcagtaattaaaagcggtttgcaa	Protospacer
*  .********** ******* ****  ..*

70. spacer 2.28|1023994|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP032695 (Rhizobium jaguaris strain CCGE525 plasmid pRCCGE525c, complete sequence) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
ccattggtcggattgtttgcgtgcggggccgg	Protospacer
. . .* .****************** * ***

71. spacer 2.28|1023994|32|CP025243|CRISPRCasFinder,CRT matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

72. spacer 2.28|1023994|32|CP025243|CRISPRCasFinder,CRT matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

73. spacer 2.28|1023994|32|CP025243|CRISPRCasFinder,CRT matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 9, identity: 0.719

tgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
cccaagcccggcttttttgcgtgcggcgaatg	Protospacer
.  . ****** ** **************  *

74. spacer 2.32|1024238|32|CP025243|CRISPRCasFinder,CRT matches to MN693555 (Marine virus AFVG_25M96, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

75. spacer 2.32|1024238|32|CP025243|CRISPRCasFinder,CRT matches to MN693550 (Marine virus AFVG_25M93, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

76. spacer 2.32|1024238|32|CP025243|CRISPRCasFinder,CRT matches to MN693245 (Marine virus AFVG_25M69, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

77. spacer 2.32|1024238|32|CP025243|CRISPRCasFinder,CRT matches to MN693208 (Marine virus AFVG_25M383, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

78. spacer 2.32|1024238|32|CP025243|CRISPRCasFinder,CRT matches to MN693436 (Marine virus AFVG_25M57, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

79. spacer 2.32|1024238|32|CP025243|CRISPRCasFinder,CRT matches to MN693515 (Marine virus AFVG_25M70, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

80. spacer 2.32|1024238|32|CP025243|CRISPRCasFinder,CRT matches to MN693320 (Marine virus AFVG_25M58, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

81. spacer 2.32|1024238|32|CP025243|CRISPRCasFinder,CRT matches to MN693286 (Marine virus AFVG_25M92, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttctaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

82. spacer 2.32|1024238|32|CP025243|CRISPRCasFinder,CRT matches to MN693549 (Marine virus AFVG_25M89, complete genome) position: , mismatch: 9, identity: 0.719

ggaataaaaatgaatttgagtcaactctataa	CRISPR spacer
ttttaataaatgaaattgattcaactctatga	Protospacer
     * ******* **** **********.*

83. spacer 2.38|1024604|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP013139 (Pseudoalteromonas sp. Bsw20308 plasmid pPBSW1, complete sequence) position: , mismatch: 9, identity: 0.719

gactcggcctgttttttgattttgacaatcag	CRISPR spacer
ccgtcggcctgttctttcattttgacttacac	Protospacer
   **********.*** ********   **

84. spacer 2.52|1025458|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP015221 (Rhodococcus sp. PBTS 2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

taagttac---gccagtgcgggcgtgttgctcatc	CRISPR spacer
---actgcgcggcgagtgcgggcgcgttgctcatg	Protospacer
   ..*.*   ** **********.*********

85. spacer 1.6|1006383|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to MG945729 (UNVERIFIED: Microviridae sp. isolate 2292-1801, complete genome) position: , mismatch: 10, identity: 0.688

aaaataacaacattatcagtgtgaaaagtctc	CRISPR spacer
gcaataacaaccttatcagtgtcaactttaat	Protospacer
. ********* ********** **   *  .

86. spacer 1.9|1006566|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to MK449008 (Streptococcus phage Javan84, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

87. spacer 1.9|1006566|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to MK448832 (Streptococcus phage Javan85, complete genome) position: , mismatch: 10, identity: 0.688

gtcagtatgcactgcttgataaagtcaggcca	CRISPR spacer
cacagtatggacagcttgataaagttacctgg	Protospacer
  ******* ** ************.*  . .

88. spacer 1.16|1006993|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to AP022645 (Bacillus wiedmannii PL1 plasmid pBwiPL1-2 DNA, complete sequence) position: , mismatch: 10, identity: 0.688

atcatcgggattcattttgttgtccgggtggc	CRISPR spacer
attatcaggattcattttgttgtattcatcaa	Protospacer
**.***.**************** .  .* .

89. spacer 1.17|1007054|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP024657 (Bacillus cereus strain MLY1 plasmid pMLY1.1, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

90. spacer 1.17|1007054|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to NZ_CP015354 (Bacillus thuringiensis strain MYBT18246 plasmid p120416, complete sequence) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tgcatttctatgtcgaaaaataaaaacggcag	Protospacer
.*   .******** **********.***.

91. spacer 1.17|1007054|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to NC_047948 (Staphylococcus phage phiSA_BS2, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

92. spacer 1.17|1007054|32|CP025243|CRISPRCasFinder,CRT,PILER-CR matches to MH078572 (Staphylococcus phage phiSA_BS1, complete genome) position: , mismatch: 10, identity: 0.688

cggtgctctatgtctaaaaataaaagcggttc	CRISPR spacer
tagatacctatgtctaaaaatgaaaggggtat	Protospacer
..*   .**************.**** *** .

93. spacer 1.18|1007115|31|CP025243|CRISPRCasFinder,CRT matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.677

agcacaatcattattagatgaactttcatca	CRISPR spacer
tcttatggcattattagatgaattttcaaca	Protospacer
  .   . **************.***** **

94. spacer 1.21|1007115|32|CP025243|PILER-CR matches to NC_011246 (Borrelia recurrentis A1 plasmid pl124, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
tcttatggcattattagatgaattttcaacaa	Protospacer
  .   . **************.***** ***

95. spacer 1.21|1007115|32|CP025243|PILER-CR matches to NZ_CP053971 (Bacillus thuringiensis strain FDAARGOS_796 plasmid unnamed3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

96. spacer 1.21|1007115|32|CP025243|PILER-CR matches to NZ_CP013278 (Bacillus thuringiensis serovar israelensis strain AM65-52 plasmid pAM65-52-3-235K, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

97. spacer 1.21|1007115|32|CP025243|PILER-CR matches to NC_018509 (Bacillus thuringiensis HD-789 plasmid pBTHD789-2, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

98. spacer 1.21|1007115|32|CP025243|PILER-CR matches to NZ_CP039724 (Bacillus thuringiensis strain BT-59 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

99. spacer 1.21|1007115|32|CP025243|PILER-CR matches to NZ_CP051859 (Bacillus thuringiensis serovar israelensis strain BGSC 4Q7rifR plasmid pBtic235, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

100. spacer 1.21|1007115|32|CP025243|PILER-CR matches to NZ_CP009347 (Bacillus thuringiensis HD1002 plasmid 3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

101. spacer 1.21|1007115|32|CP025243|PILER-CR matches to NZ_CP045025 (Bacillus thuringiensis strain JW-1 plasmid p3, complete sequence) position: , mismatch: 10, identity: 0.688

agcacaatcattattagatgaactttcatcaa	CRISPR spacer
ccaacatgcattattagatgaacttttctttt	Protospacer
   ***  ******************. *.

102. spacer 2.2|1023993|33|CP025243|PILER-CR matches to NC_024369 (Vibrio phage X29, complete genome) position: , mismatch: 10, identity: 0.697

gtgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
tcccaagcccggcttttttgcgtgcggcgaatg	Protospacer
 .  . ****** ** **************  *

103. spacer 2.2|1023993|33|CP025243|PILER-CR matches to MK575466 (Vibrio phage Rostov 7, complete genome) position: , mismatch: 10, identity: 0.697

gtgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
tcccaagcccggcttttttgcgtgcggcgaatg	Protospacer
 .  . ****** ** **************  *

104. spacer 2.2|1023993|33|CP025243|PILER-CR matches to KJ545483 (Vibrio phage phi 2, complete genome) position: , mismatch: 10, identity: 0.697

gtgggcgcccggattgtttgcgtgcggcgacgg	CRISPR spacer
tcccaagcccggcttttttgcgtgcggcgaatg	Protospacer
 .  . ****** ** **************  *

105. spacer 2.31|1024177|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP021653 (Ralstonia solanacearum strain RS 488 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

106. spacer 2.31|1024177|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP012688 (Ralstonia solanacearum strain UY031 plasmid unnamed, complete sequence) position: , mismatch: 10, identity: 0.688

cgcggggctggtattcgatacagacccggcta	CRISPR spacer
gctcgggctggtattcgattccgacccgcgcc	Protospacer
  . *************** * ******  .

107. spacer 2.37|1024543|32|CP025243|CRISPRCasFinder,CRT matches to MK047641 (Phage NV21, complete genome) position: , mismatch: 10, identity: 0.688

ccgaatatggtgataatgttgcaccttcgctc	CRISPR spacer
ctacttatggtgataatgtttcaccgtcttgg	Protospacer
*..  *************** **** ** .

108. spacer 2.39|1024665|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP015881 (Ensifer adhaerens strain Casida A plasmid pCasidaAA, complete sequence) position: , mismatch: 10, identity: 0.688

ccaataaccgacgagggcaaacgccgtgcgcg	CRISPR spacer
atcagcgccgacgagggcacccgccgtgcggt	Protospacer
 . *  .************  *********

109. spacer 2.39|1024665|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP030263 (Ensifer adhaerens strain Corn53 plasmid AA, complete sequence) position: , mismatch: 10, identity: 0.688

ccaataaccgacgagggcaaacgccgtgcgcg	CRISPR spacer
atcagcgccgacgagggcacccgccgtgcggt	Protospacer
 . *  .************  *********

110. spacer 2.47|1025153|32|CP025243|CRISPRCasFinder,CRT matches to NZ_CP021033 (Rhizobium sp. NXC14 plasmid pRspNXC14c, complete sequence) position: , mismatch: 10, identity: 0.688

gcgatgtatgccgcgacgatcgagagcgaact	CRISPR spacer
tttgtccatgccgcgacgatcgataccgaaaa	Protospacer
 . .* .**************** * ****

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

678735 : 721826

Cronobacter_phage(66.67%)

holin,tRNA,integrase,head,capsid,portal,terminase,tail

attL 672801:672821|attR 720541:720561

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
672801:672821	attL	NA	NA	NA	NA
QAZ27153.1\|678735_680301_+	methyl-accepting chemotaxis protein	A0A2H4J162	uncultured_Caudovirales_phage	1.7e-12	33.9
QAZ27154.1\|680297_680945_-	PadR family transcriptional regulator	NA	NA	NA	NA
QAZ27155.1\|681176_681944_+	siderophore-interacting protein	NA	NA	NA	NA
QAZ27156.1\|682154_683192_-\|integrase	integrase	F1BUS9	Erwinia_phage	2.8e-120	64.1
QAZ27157.1\|683188_683677_-	hypothetical protein	NA	NA	NA	NA
QAZ27158.1\|683684_684272_-	phage repressor protein CI	F1BUS8	Erwinia_phage	1.9e-33	40.3
QAZ27159.1\|684410_684632_+	regulator	NA	NA	NA	NA
QAZ27160.1\|684662_685166_+	hypothetical protein	F1BUN6	Cronobacter_phage	3.5e-60	72.5
QAZ27161.1\|685175_685358_+	hypothetical protein	NA	NA	NA	NA
QAZ27162.1\|685362_685788_+	hypothetical protein	F1BUN5	Cronobacter_phage	1.7e-28	56.2
QAZ27163.1\|685787_686189_+	hypothetical protein	F1BUN2	Cronobacter_phage	1.2e-47	66.2
QAZ27164.1\|686256_686490_+	DUF2732 domain-containing protein	NA	NA	NA	NA
QAZ27165.1\|686480_686888_+	Eaa protein	A0A076GCP4	Escherichia_phage	9.8e-13	44.2
QAZ27166.1\|686884_687214_+	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	3.0e-12	45.2
QAZ27167.1\|687203_688064_+	adenine methylase	F1BUN1	Cronobacter_phage	1.5e-132	83.1
QAZ27168.1\|688060_690082_+	replication endonuclease	F1BUM9	Cronobacter_phage	5.0e-299	74.9
QAZ27169.1\|690201_690408_+	hypothetical protein	NA	NA	NA	NA
QAZ27170.1\|690381_690705_-	transcriptional regulator	F1BUM8	Cronobacter_phage	8.0e-50	92.3
QAZ27171.1\|690701_691763_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	3.0e-162	77.1
QAZ27172.1\|691759_693535_-\|terminase	terminase	F1BUM5	Cronobacter_phage	5.4e-289	82.6
QAZ27173.1\|693695_694499_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	4.1e-79	56.4
QAZ27174.1\|694560_695583_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
QAZ27175.1\|695586_696288_+\|terminase	terminase	F1BUM0	Cronobacter_phage	9.4e-88	66.8
QAZ27176.1\|696333_696837_+\|head	head completion protein	F1BUL8	Cronobacter_phage	5.2e-64	82.0
QAZ27177.1\|696833_697340_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.2e-64	69.8
QAZ27178.1\|697336_698044_+	hypothetical protein	F1BUL6	Cronobacter_phage	6.8e-102	76.9
QAZ27179.1\|698040_699168_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.9e-175	83.7
QAZ27180.1\|699164_699620_+	DUF2597 domain-containing protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
QAZ27181.1\|699629_699923_+\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
QAZ27182.1\|699919_700261_+	hypothetical protein	F1BUL3	Cronobacter_phage	2.2e-50	91.1
QAZ27183.1\|700260_700593_+	hypothetical protein	F1BUL2	Cronobacter_phage	6.7e-36	70.9
QAZ27184.1\|700564_700753_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.1e-22	80.6
QAZ27185.1\|700739_700997_+	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
QAZ27186.1\|701184_703155_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	9.2e-266	68.8
QAZ27187.1\|703151_703481_+	DUF2590 domain-containing protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
QAZ27188.1\|703477_704662_+	hypothetical protein	F1BUK6	Cronobacter_phage	3.9e-179	78.4
QAZ27189.1\|704648_705242_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.4e-89	82.1
QAZ27190.1\|705251_707495_+\|tail	phage tail protein	Q8HAB4	Salmonella_phage	4.4e-171	72.7
QAZ27191.1\|707507_708062_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	3.0e-97	96.7
QAZ27192.1\|708051_708777_+	hypothetical protein	F1BUK1	Cronobacter_phage	6.6e-68	56.4
QAZ27193.1\|708748_709294_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.5e-58	71.4
QAZ27194.1\|709293_710997_+	hypothetical protein	F1BUJ7	Cronobacter_phage	3.8e-223	81.4
QAZ27195.1\|712169_712676_+	mismatch-specific DNA-glycosylase	NA	NA	NA	NA
QAZ27196.1\|712799_714782_-	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	9.0e-35	33.7
QAZ27197.1\|714796_716542_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	2.1e-72	38.4
QAZ27198.1\|716777_716993_-	30S ribosomal protein S21	NA	NA	NA	NA
QAZ27199.1\|717220_718234_+\|tRNA	tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex transferase subunit TsaD	A0A0R6PI74	Moraxella_phage	2.8e-109	59.5
QAZ27200.1\|718137_718476_-	hypothetical protein	NA	NA	NA	NA
QAZ27201.1\|718483_719095_-	acyl-phosphate--glycerol-3-phosphate O-acyltransferase	NA	NA	NA	NA
QAZ27202.1\|719201_719561_+	bifunctional dihydroneopterin aldolase/7,8-dihydroneopterin epimerase	NA	NA	NA	NA
QAZ27203.1\|719658_720480_+	undecaprenyl-diphosphatase	NA	NA	NA	NA
QAZ27204.1\|720584_721826_-\|tRNA	multifunctional CCA tRNA nucleotidyl transferase/2'3'-cyclic phosphodiesterase/2'nucleotidase/phosphatase	A0A0F6YPT7	Sinorhizobium_phage	6.5e-92	47.9
720541:720561	attR	NA	NA	NA	NA

DBSCAN-SWA_2

1201597 : 1263331

Cronobacter_phage(76.32%)

holin,tRNA,integrase,head,capsid,portal,terminase,tail

attL 1202973:1203020|attR 1234649:1234696

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ27668.1\|1201597_1202791_-\|integrase	integrase	A0A1B5FPC6	Escherichia_phage	2.6e-106	49.6
1202973:1203020	attL	NA	NA	NA	NA
QAZ27669.1\|1203136_1204147_-\|integrase	integrase	F1BUN9	Cronobacter_phage	9.5e-174	85.7
QAZ27670.1\|1204146_1204713_-	Repressor protein CI	F1BUN8	Cronobacter_phage	1.1e-65	59.7
QAZ27671.1\|1204858_1205062_+	hypothetical protein	F1BUN7	Cronobacter_phage	1.0e-10	52.0
QAZ27672.1\|1205099_1205603_+	hypothetical protein	F1BUN6	Cronobacter_phage	1.5e-58	71.3
QAZ27673.1\|1205612_1205840_+	hypothetical protein	NA	NA	NA	NA
QAZ27674.1\|1205829_1206255_+	hypothetical protein	F1BUN5	Cronobacter_phage	2.2e-23	49.6
QAZ27675.1\|1206254_1206656_+	hypothetical protein	F1BUN2	Cronobacter_phage	1.4e-48	66.9
QAZ27676.1\|1206723_1206954_+	DUF2732 domain-containing protein	NA	NA	NA	NA
QAZ27677.1\|1206944_1207274_+	DUF3850 domain-containing protein	Q2P9X4	Enterobacteria_phage	2.0e-11	45.2
QAZ27678.1\|1207263_1208097_+	adenine methylase	F1BUN1	Cronobacter_phage	1.6e-105	68.3
QAZ27679.1\|1208093_1210115_+	replication endonuclease	F1BUM9	Cronobacter_phage	1.9e-298	74.9
QAZ27680.1\|1210227_1210446_+	hypothetical protein	E5G6M0	Salmonella_phage	3.6e-06	49.1
QAZ27681.1\|1210419_1210743_-	transcriptional regulator	F1BUM8	Cronobacter_phage	8.0e-50	92.3
QAZ27682.1\|1210739_1211801_-\|portal	phage portal protein	F1BUM7	Cronobacter_phage	6.0e-163	77.1
QAZ27683.1\|1211797_1213573_-\|terminase	terminase	F1BUM5	Cronobacter_phage	7.0e-289	82.6
QAZ27684.1\|1213733_1214537_+\|capsid	phage capsid protein	F1BUM4	Cronobacter_phage	4.1e-79	56.4
QAZ27685.1\|1214598_1215621_+\|capsid	phage major capsid protein, P2 family	F1BUM2	Cronobacter_phage	1.1e-158	81.2
QAZ27686.1\|1215624_1216326_+\|terminase	terminase	F1BUM0	Cronobacter_phage	9.4e-88	66.8
QAZ27687.1\|1216371_1216875_+\|head	head completion protein	F1BUL8	Cronobacter_phage	5.2e-64	82.0
QAZ27688.1\|1216871_1217378_+\|tail	phage tail protein	F1BUL7	Cronobacter_phage	5.2e-64	69.8
QAZ27689.1\|1217374_1218082_+	hypothetical protein	F1BUL6	Cronobacter_phage	6.8e-102	76.9
QAZ27690.1\|1218078_1219206_+	DUF2586 domain-containing protein	F1BUL5	Cronobacter_phage	1.9e-175	83.7
QAZ27691.1\|1219202_1219658_+	DUF2597 domain-containing protein	F1BUL4	Cronobacter_phage	1.5e-57	72.2
QAZ27692.1\|1219667_1219961_+\|holin	holin	C7BGD7	Burkholderia_phage	1.3e-14	46.2
QAZ27693.1\|1219957_1220299_+	hypothetical protein	F1BUL3	Cronobacter_phage	2.2e-50	91.1
QAZ27694.1\|1220298_1220631_+	hypothetical protein	F1BUL2	Cronobacter_phage	6.7e-36	70.9
QAZ27695.1\|1220602_1220791_+	hypothetical protein	F1BUL1	Cronobacter_phage	1.1e-22	80.6
QAZ27696.1\|1220777_1221035_+	hypothetical protein	A5X9I7	Aeromonas_virus	3.6e-21	63.4
QAZ27697.1\|1221222_1223193_+\|tail	phage tail tape measure protein	F1BUK9	Cronobacter_phage	9.2e-266	68.8
QAZ27698.1\|1223189_1223519_+	DUF2590 domain-containing protein	F1BUK8	Cronobacter_phage	3.8e-39	72.4
QAZ27699.1\|1223515_1224700_+	hypothetical protein	F1BUK6	Cronobacter_phage	6.7e-179	78.4
QAZ27700.1\|1224686_1225280_+	hypothetical protein	F1BUK5	Cronobacter_phage	1.1e-89	82.1
QAZ27701.1\|1225289_1227395_+\|tail	phage tail protein	S4TP62	Salmonella_phage	8.8e-198	69.0
QAZ31216.1\|1227503_1227962_+\|tail	tail fiber assembly protein	S4TUB9	Salmonella_phage	1.6e-75	93.2
QAZ27702.1\|1227951_1228677_+	hypothetical protein	F1BUK1	Cronobacter_phage	5.5e-67	56.0
QAZ27703.1\|1228648_1229194_+	hypothetical protein	F1BUJ9	Cronobacter_phage	3.2e-59	72.0
QAZ27704.1\|1229193_1230897_+	hypothetical protein	F1BUJ7	Cronobacter_phage	4.9e-223	81.3
QAZ27705.1\|1231577_1232696_+	hypothetical protein	NA	NA	NA	NA
QAZ27706.1\|1234321_1234570_-	hypothetical protein	NA	NA	NA	NA
QAZ31217.1\|1235085_1236249_-	HlyD family type I secretion periplasmic adaptor subunit	NA	NA	NA	NA
1234649:1234696	attR	NA	NA	NA	NA
QAZ27707.1\|1236256_1238437_-	type I secretion system permease/ATPase	F2Y302	Organic_Lake_phycodnavirus	9.9e-19	34.0
QAZ27708.1\|1238433_1239843_-	type I secretion protein TolC	NA	NA	NA	NA
QAZ27709.1\|1239907_1251073_-	Ig-like domain repeat protein	NA	NA	NA	NA
QAZ31218.1\|1251686_1252169_-	SsrA-binding protein	W5RAM5	Staphylococcus_phage	5.2e-29	47.4
QAZ27710.1\|1252318_1252795_+	ubiquinone-binding protein	NA	NA	NA	NA
QAZ27711.1\|1252784_1253075_+	RnfH family protein	NA	NA	NA	NA
QAZ27712.1\|1253240_1253579_-	outer membrane protein assembly factor BamE	NA	NA	NA	NA
QAZ27713.1\|1253727_1255389_-	DNA repair protein RecN	NA	NA	NA	NA
QAZ27714.1\|1255474_1256353_-	NAD(+) kinase	NA	NA	NA	NA
QAZ31219.1\|1256284_1256479_+	molecular chaperone GrpE	NA	NA	NA	NA
QAZ27715.1\|1256475_1257066_+	nucleotide exchange factor GrpE	NA	NA	NA	NA
QAZ27716.1\|1257100_1257706_-	cytoplasmic protein	NA	NA	NA	NA
QAZ27717.1\|1257826_1259068_-	magnesium/cobalt efflux protein	NA	NA	NA	NA
QAZ27718.1\|1259132_1259924_-	inner membrane protein YpjD	NA	NA	NA	NA
QAZ27719.1\|1259869_1260166_-	hypothetical protein	NA	NA	NA	NA
QAZ27720.1\|1260089_1261451_+	signal recognition particle protein	NA	NA	NA	NA
QAZ27721.1\|1261703_1261952_+	30S ribosomal protein S16	NA	NA	NA	NA
QAZ27722.1\|1261970_1262519_+	ribosome maturation factor RimM	NA	NA	NA	NA
QAZ27723.1\|1262563_1263331_+\|tRNA	tRNA (guanosine(37)-N1)-methyltransferase TrmD	NA	NA	NA	NA

DBSCAN-SWA_3

1290335 : 1367075

Salmonella_phage(37.93%)

holin,tRNA,integrase,transposase,head,capsid,terminase,portal,tail,protease,lysis

attL 1282416:1282432|attR 1372922:1372938

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1282416:1282432	attL	NA	NA	NA	NA
QAZ27745.1\|1290335_1291373_+\|tRNA	tRNA/rRNA methyltransferase	NA	NA	NA	NA
QAZ27746.1\|1291488_1292178_-	uracil-DNA glycosylase	A0A172DS90	Canid_alphaherpesvirus	4.6e-55	49.5
QAZ27747.1\|1292496_1292880_+	autonomous glycyl radical cofactor GrcA	Q7Y524	Enterobacteria_phage	6.1e-33	74.0
QAZ27748.1\|1292941_1293529_-	cysteine/O-acetylserine efflux protein	NA	NA	NA	NA
QAZ31221.1\|1293631_1294531_+	LysR family transcriptional regulator	NA	NA	NA	NA
QAZ27749.1\|1294548_1295883_-	ATP-dependent RNA helicase SrmB	A0A1B1IS59	uncultured_Mediterranean_phage	1.6e-43	29.7
QAZ27750.1\|1296012_1296750_+\|tRNA	tRNA (adenosine(37)-N6)-methyltransferase TrmM	NA	NA	NA	NA
QAZ27751.1\|1296734_1298357_-	L-aspartate oxidase	NA	NA	NA	NA
QAZ27752.1\|1298441_1298621_+	hypothetical protein	NA	NA	NA	NA
QAZ27753.1\|1298781_1299357_+	RNA polymerase sigma factor RpoE	NA	NA	NA	NA
QAZ27754.1\|1299388_1300039_+	anti-sigma-E factor RseA	NA	NA	NA	NA
QAZ27755.1\|1300038_1300995_+	sigma-E factor regulatory protein RseB	NA	NA	NA	NA
QAZ27756.1\|1300991_1301471_+	SoxR reducing system protein RseC	NA	NA	NA	NA
QAZ27757.1\|1301500_1301617_+	transcriptional regulator	NA	NA	NA	NA
QAZ27758.1\|1301968_1303198_+\|integrase	integrase	H6WRW7	Salmonella_phage	4.9e-233	94.1
QAZ27759.1\|1303175_1303460_-	excisionase	H6WRW8	Salmonella_phage	3.1e-42	86.2
QAZ27760.1\|1303500_1303740_-	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
QAZ27761.1\|1303782_1304940_-	enterohemolysin	S4TTE8	Salmonella_phage	3.9e-216	99.5
QAZ27762.1\|1304902_1307830_-	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	99.2
QAZ27763.1\|1307956_1308307_-	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	1.1e-60	97.4
QAZ27764.1\|1308328_1308487_-	hypothetical protein	H6WRX3	Salmonella_phage	9.0e-23	98.1
QAZ27765.1\|1308943_1309606_-	hypothetical protein	NA	NA	NA	NA
QAZ27766.1\|1309605_1309992_-	hypothetical protein	NA	NA	NA	NA
QAZ27767.1\|1309984_1310824_-	chromosome partitioning protein ParA	A0A1X9IGI7	Lactococcus_phage	1.5e-31	33.3
QAZ27768.1\|1310882_1311278_-	transcriptional regulator	K7PM35	Enterobacteria_phage	1.9e-37	61.4
QAZ27769.1\|1311377_1311620_+	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	2.1e-23	64.1
QAZ27770.1\|1311579_1311954_+	hypothetical protein	S4TTD7	Salmonella_phage	1.9e-63	98.4
QAZ27771.1\|1312045_1312930_+	replication protein	K7PGT1	Enterobacteria_phage	1.3e-46	47.2
QAZ27772.1\|1312926_1313622_+	phage replication protein	G8C7U6	Escherichia_phage	2.1e-55	45.4
QAZ27773.1\|1313635_1314334_+	DUF550 domain-containing protein	A0A0M4RTV1	Salmonella_phage	2.1e-63	85.7
QAZ27774.1\|1314441_1315074_+	hypothetical protein	NA	NA	NA	NA
QAZ27775.1\|1315316_1315550_+	DinI family protein	H6WRY5	Salmonella_phage	5.6e-37	100.0
QAZ27776.1\|1315666_1315915_+	hypothetical protein	A0A0U2C0C8	Salmonella_phage	1.6e-42	100.0
QAZ27777.1\|1315949_1316552_+	hypothetical protein	S4TTI0	Salmonella_phage	2.8e-109	99.0
QAZ27778.1\|1316551_1316758_+	hypothetical protein	S4TNP0	Salmonella_phage	1.7e-34	97.1
QAZ27779.1\|1316760_1317372_+	protein NinG	A0A0M4RU10	Salmonella_phage	1.8e-90	98.5
QAZ27780.1\|1317368_1317509_+	hypothetical protein	A0A0M5M7B2	Salmonella_phage	7.2e-08	78.9
QAZ27781.1\|1317505_1318183_+	antiterminator	I6PDF8	Cronobacter_phage	7.7e-63	54.0
QAZ27782.1\|1318179_1318365_+	hypothetical protein	NA	NA	NA	NA
QAZ27783.1\|1318455_1319019_+	hypothetical protein	A0A0P0ZC44	Stx2-converting_phage	7.6e-56	92.2
QAZ27784.1\|1319525_1319714_+	hypothetical protein	NA	NA	NA	NA
QAZ27785.1\|1319928_1320615_-\|protease	type III secretion system effector protease GogA	Q9MBM2	Phage_Gifsy-1	9.4e-133	100.0
QAZ31222.1\|1320890_1321220_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
QAZ27786.1\|1321203_1321656_+	lysozyme	A0A0M4R365	Salmonella_phage	5.1e-79	97.3
QAZ31223.1\|1321673_1322126_+\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	2.9e-66	92.7
QAZ27787.1\|1322361_1322763_-	inhibitor of g-type lysozyme	NA	NA	NA	NA
QAZ27788.1\|1322797_1322992_+	hypothetical protein	NA	NA	NA	NA
QAZ27789.1\|1323049_1323595_+\|terminase	terminase small subunit	A0A0U2S671	Escherichia_phage	1.5e-56	80.6
QAZ27790.1\|1323566_1325498_+\|terminase	terminase	A0A0K2FJ14	Enterobacteria_phage	6.3e-259	65.7
QAZ27791.1\|1325481_1325685_+\|tail	phage tail protein	K7PM10	Enterobacteria_phage	1.9e-17	73.8
QAZ27792.1\|1325681_1327262_+\|portal	phage portal protein	K7P6U7	Enterobacteria_phage	9.6e-189	62.8
QAZ27793.1\|1327251_1328748_+	scaffolding protein	A0A0K2FI53	Enterobacteria_phage	8.1e-97	52.2
QAZ27794.1\|1328760_1329108_+\|head	head decoration protein	A0A2R9YJN3	Escherichia_phage	9.2e-20	52.7
QAZ27795.1\|1329162_1330191_+\|capsid	minor capsid protein E	C6ZCY2	Enterobacteria_phage	1.7e-114	61.1
QAZ27796.1\|1330248_1330608_+	DNA packaging protein	NA	NA	NA	NA
QAZ27797.1\|1330618_1331002_+\|tail	phage tail protein	A0A0K2FJB7	Enterobacteria_phage	9.2e-29	55.6
QAZ27798.1\|1331029_1331608_+\|tail	phage tail protein	A5LH33	Enterobacteria_phage	3.7e-82	80.2
QAZ27799.1\|1331656_1332907_-\|transposase	transposase	Q9G0F2	Phage_Gifsy-1	7.8e-218	100.0
QAZ27800.1\|1332895_1333297_+\|tail	phage tail protein	Q9G0F3	Phage_Gifsy-1	8.1e-52	100.0
QAZ27801.1\|1333304_1334051_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
QAZ27802.1\|1334101_1334497_+\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
QAZ27803.1\|1334493_1334832_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
QAZ27804.1\|1334803_1337899_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	6.1e-280	62.3
QAZ27805.1\|1337901_1338231_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
QAZ27806.1\|1338240_1338939_+\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	5.5e-104	76.3
QAZ27807.1\|1338945_1339683_+\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	5.2e-129	85.0
QAZ27808.1\|1339580_1340228_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.1e-89	77.7
QAZ27809.1\|1340289_1343652_+	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	79.7
QAZ27810.1\|1343690_1343933_+	hypothetical protein	NA	NA	NA	NA
QAZ27811.1\|1343986_1346359_+\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	1.1e-90	65.6
QAZ27812.1\|1346355_1347180_+\|tail	phage tail protein	A0A0M4QWS3	Salmonella_phage	1.2e-145	92.0
QAZ27813.1\|1347169_1347748_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.6e-93	88.9
QAZ27814.1\|1347844_1348072_-	phage virulence factor	NA	NA	NA	NA
QAZ27815.1\|1348178_1348391_+	hypothetical protein	S4TTF2	Salmonella_phage	3.8e-08	90.6
QAZ31224.1\|1348453_1348519_+	hypothetical protein	NA	NA	NA	NA
QAZ27816.1\|1349183_1349729_-\|transposase	transposase	NA	NA	NA	NA
QAZ27817.1\|1349975_1350113_-	hypothetical protein	NA	NA	NA	NA
QAZ27818.1\|1350597_1352091_-	type III secretion system protein	Q9MBM1	Phage_Gifsy-1	3.4e-260	100.0
QAZ27819.1\|1352495_1354295_+	elongation factor 4	E4ZFJ7	Streptococcus_phage	7.2e-23	24.9
QAZ27820.1\|1354311_1355286_+	S26 family signal peptidase	NA	NA	NA	NA
QAZ27821.1\|1355559_1356240_+	ribonuclease 3	A0A2K9L5P0	Tupanvirus	7.4e-21	31.8
QAZ27822.1\|1356236_1357142_+	GTPase Era	NA	NA	NA	NA
QAZ27823.1\|1357153_1357882_+	DNA repair protein RecO	NA	NA	NA	NA
QAZ27824.1\|1357893_1358625_+	pyridoxine 5'-phosphate synthase	NA	NA	NA	NA
QAZ27825.1\|1358624_1359005_+	holo-ACP synthase	NA	NA	NA	NA
QAZ27826.1\|1359116_1359377_-	ferredoxin	A0A1B1IWY9	uncultured_Mediterranean_phage	4.9e-18	53.5
QAZ27827.1\|1359414_1360341_-	LysR family transcriptional regulator	A0A2P0ZL89	Lactobacillus_phage	1.8e-09	24.4
QAZ27828.1\|1360456_1361653_+	MFS transporter	NA	NA	NA	NA
QAZ27829.1\|1361674_1362592_+	2-dehydropantoate 2-reductase	NA	NA	NA	NA
QAZ27830.1\|1362630_1363479_-	MurR/RpiR family transcriptional regulator	NA	NA	NA	NA
QAZ27831.1\|1363594_1364488_+	N-acetylmuramic acid 6-phosphate etherase	NA	NA	NA	NA
QAZ27832.1\|1364498_1365860_+	PTS sugar transporter subunit IIC	NA	NA	NA	NA
QAZ27833.1\|1365863_1366499_+	phosphatidylglycerophosphatase C	NA	NA	NA	NA
QAZ27834.1\|1366523_1367075_+\|tRNA	tRNA adenosine(34) deaminase TadA	NA	NA	NA	NA
1372922:1372938	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1810983 : 1820154

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ28233.1\|1810983_1811931_+	ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
QAZ28234.1\|1811914_1812646_+	ABC transporter permease	NA	NA	NA	NA
QAZ28235.1\|1812626_1812734_-	hypothetical protein	NA	NA	NA	NA
QAZ28236.1\|1812793_1813525_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
QAZ28237.1\|1813747_1815433_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	4.8e-279	91.3
QAZ28238.1\|1815429_1816149_+	DNA-binding response regulator	NA	NA	NA	NA
QAZ28239.1\|1816195_1816663_+	DUF1456 domain-containing protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
QAZ28240.1\|1816719_1817250_-	lipoprotein	NA	NA	NA	NA
QAZ28241.1\|1817421_1817880_-	lipoprotein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
QAZ28242.1\|1818120_1820154_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_5

1888245 : 1898752

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ28297.1\|1888245_1889649_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	3.1e-21	26.5
QAZ28298.1\|1889826_1890720_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
QAZ28299.1\|1891096_1892182_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
QAZ28300.1\|1892181_1893081_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	5.1e-30	36.0
QAZ28301.1\|1893128_1894007_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	5.1e-107	64.8
QAZ28302.1\|1894007_1894559_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	1.0e-52	58.0
QAZ28303.1\|1894564_1895539_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
QAZ28304.1\|1895554_1896328_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
QAZ28305.1\|1896332_1897412_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	1.3e-16	24.5
QAZ28306.1\|1897438_1898752_+	LPS biosynthesis protein	H8ZJ36	Ostreococcus_tauri_virus	9.1e-52	35.1

DBSCAN-SWA_6

1991884 : 2002534

Morganella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ28395.1\|1991884_1992409_-	peptidase	G9L6C4	Escherichia_phage	1.3e-36	77.7
QAZ28396.1\|1993055_1993346_-	DUF4102 domain-containing protein	B7SYF8	Stenotrophomonas_phage	1.0e-08	50.9
QAZ28397.1\|1993717_1994515_-	protein MtfA	NA	NA	NA	NA
QAZ28398.1\|1994995_1995157_+	hypothetical protein	NA	NA	NA	NA
QAZ28399.1\|1995283_1995703_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
QAZ28400.1\|1995705_1996974_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.4e-227	92.2
QAZ28401.1\|1997428_1997641_+	cold-shock protein CspJ	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
QAZ31247.1\|1997651_1997840_+	cold-shock protein	NA	NA	NA	NA
QAZ28402.1\|1998097_1999294_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	5.1e-110	56.1
QAZ28403.1\|1999305_1999506_-	hypothetical protein	NA	NA	NA	NA
QAZ28404.1\|1999943_2000255_+	hypothetical protein	NA	NA	NA	NA
QAZ28405.1\|2000334_2001030_+	phosphohydrolase	S4W232	Pandoravirus	2.8e-07	28.0
QAZ28406.1\|2001103_2002534_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_7

2107572 : 2142689

Salmonella_phage(25.0%)

integrase,protease,tail

attL 2109330:2109345|attR 2124363:2124378

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ28520.1\|2107572_2108652_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	8.7e-101	52.5
2109330:2109345	attL	NA	NA	NA	NA
QAZ28521.1\|2109785_2110073_+	lytic enzyme	Q8HA86	Salmonella_phage	8.1e-38	92.7
QAZ28522.1\|2110860_2111028_-	lytic enzyme	NA	NA	NA	NA
QAZ28523.1\|2111092_2111281_-	hypothetical protein	NA	NA	NA	NA
QAZ28524.1\|2111753_2112635_+\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	1.4e-64	74.9
QAZ28525.1\|2112731_2112932_-	phage virulence factor	NA	NA	NA	NA
QAZ28526.1\|2113133_2113238_-\|tail	phage tail protein	NA	NA	NA	NA
QAZ28527.1\|2113500_2113626_+	arsenic transporter	NA	NA	NA	NA
QAZ28528.1\|2113754_2114021_+	hypothetical protein	NA	NA	NA	NA
QAZ28529.1\|2114773_2115388_-	disulfide bond formation protein B	NA	NA	NA	NA
QAZ28530.1\|2115397_2115556_-	hypothetical protein	NA	NA	NA	NA
QAZ28531.1\|2115688_2116603_-	protein PagO	NA	NA	NA	NA
QAZ31252.1\|2117220_2117421_+	hypothetical protein	NA	NA	NA	NA
QAZ28532.1\|2117711_2117960_+	hypothetical protein	NA	NA	NA	NA
QAZ28533.1\|2117897_2118266_-\|integrase	integrase	K7PHK0	Enterobacteria_phage	5.4e-18	39.8
QAZ28534.1\|2119729_2119870_-	hypothetical protein	NA	NA	NA	NA
QAZ28535.1\|2120034_2120304_-	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
QAZ28536.1\|2120350_2120545_+	hypothetical protein	NA	NA	NA	NA
QAZ28537.1\|2120673_2121093_+	N-acetyltransferase	NA	NA	NA	NA
QAZ28538.1\|2124165_2125179_-	acyltransferase	NA	NA	NA	NA
2124363:2124378	attR	NA	NA	NA	NA
QAZ28539.1\|2125875_2126079_-	fimbrial protein	NA	NA	NA	NA
QAZ28540.1\|2126262_2126547_-	hypothetical protein	NA	NA	NA	NA
QAZ28541.1\|2127706_2127916_+	chemotaxis protein	NA	NA	NA	NA
QAZ28542.1\|2128143_2128620_-	hypothetical protein	NA	NA	NA	NA
QAZ28543.1\|2128935_2129331_-	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	7.0e-16	32.8
QAZ28544.1\|2130014_2130737_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
QAZ28545.1\|2131021_2131186_+	hypothetical protein	NA	NA	NA	NA
QAZ28546.1\|2131409_2132060_+	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	2.7e-57	50.9
QAZ28547.1\|2132078_2132270_-	DUF1482 domain-containing protein	NA	NA	NA	NA
QAZ28548.1\|2132380_2132620_-	DUF1480 domain-containing protein	NA	NA	NA	NA
QAZ31253.1\|2132734_2134174_-	ribosomal RNA small subunit methyltransferase F	NA	NA	NA	NA
QAZ28549.1\|2134251_2136891_-	MCE family protein	NA	NA	NA	NA
QAZ28550.1\|2136853_2138137_-	paraquat-inducible protein A	NA	NA	NA	NA
QAZ28551.1\|2138178_2138763_+	Free methionine-R-sulfoxide reductase	NA	NA	NA	NA
QAZ28552.1\|2138860_2139547_+	RNA chaperone ProQ	NA	NA	NA	NA
QAZ28553.1\|2139566_2141615_+\|tail,protease	tail-specific protease	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
QAZ28554.1\|2141807_2142689_+\|protease	protease HtpX	NA	NA	NA	NA

DBSCAN-SWA_8

2900916 : 3029130

157

Salmonella_phage(51.43%)

holin,tRNA,integrase,head,portal,tail,protease,lysis

attL 2968509:2968528|attR 3040282:3040301

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ31286.1\|2900916_2901237_-	hypothetical protein	E5G6P3	Salmonella_phage	1.2e-08	76.6
QAZ29306.1\|2901454_2902330_+	SPI-2 type III secretion system effector PipB	NA	NA	NA	NA
QAZ29307.1\|2902551_2903232_+\|protease	type III secretion system effector protease PipA	Q9MBM0	Phage_Gifsy-2	9.8e-82	71.0
QAZ29308.1\|2903620_2903887_+	hypothetical protein	A0A0M3ULK3	Salmonella_phage	7.3e-33	78.4
QAZ29309.1\|2903943_2904591_+	hypothetical protein	NA	NA	NA	NA
QAZ31287.1\|2904633_2904831_-	hypothetical protein	S4TTF2	Salmonella_phage	1.4e-09	97.0
QAZ29310.1\|2905456_2905849_-	DUF1353 domain-containing protein	I1TQ41	Pseudomonas_phage	8.5e-14	37.4
QAZ29311.1\|2905958_2906567_-	DUF4376 domain-containing protein	S5MBX6	Escherichia_phage	1.1e-31	44.7
QAZ29312.1\|2906629_2906815_-	hypothetical protein	NA	NA	NA	NA
QAZ29313.1\|2907063_2907582_-\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	2.0e-47	53.8
QAZ29314.1\|2907596_2909129_-\|tail	phage tail protein	S4TP62	Salmonella_phage	1.4e-128	66.2
QAZ29315.1\|2909128_2909809_-	DUF2612 domain-containing protein	A0A0M5M1K4	Salmonella_phage	5.5e-125	96.0
QAZ29316.1\|2909805_2911005_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	5.5e-213	96.7
QAZ29317.1\|2911005_2911359_-	hypothetical protein	A0A0M4R339	Salmonella_phage	3.0e-58	95.7
QAZ29318.1\|2911358_2912111_-	translation initiation factor IF-2	A0A0M5M1K7	Salmonella_phage	9.7e-91	69.8
QAZ29319.1\|2912229_2912685_+	hypothetical protein	NA	NA	NA	NA
QAZ29320.1\|2912768_2913101_-	hypothetical protein	A0A0M4RTY3	Salmonella_phage	1.7e-23	69.1
QAZ29321.1\|2913097_2914165_-	hypothetical protein	A0A0M4QX01	Salmonella_phage	2.0e-174	91.5
QAZ29322.1\|2914167_2914470_-	hypothetical protein	A0A0M4R5B7	Salmonella_phage	4.2e-53	100.0
QAZ29323.1\|2914469_2915045_-	hypothetical protein	A0A0M3ULD5	Salmonella_phage	2.4e-97	100.0
QAZ29324.1\|2915044_2917054_-	lytic transglycosylase	A0A0M4REK7	Salmonella_phage	0.0e+00	95.2
QAZ31288.1\|2917043_2917220_-	NTP pyrophosphohydrolase	A0A2H4J1A2	uncultured_Caudovirales_phage	4.7e-12	72.9
QAZ29325.1\|2917231_2917684_-	hypothetical protein	A0A0M4S6U8	Salmonella_phage	1.3e-61	78.7
QAZ29326.1\|2917687_2918131_-	DUF3277 domain-containing protein	A0A2H4J619	uncultured_Caudovirales_phage	1.0e-55	74.5
QAZ29327.1\|2918143_2919289_-	DUF3383 domain-containing protein	A0A2H4J8G4	uncultured_Caudovirales_phage	1.2e-164	75.3
QAZ29328.1\|2919292_2919856_-	hypothetical protein	A0A0M4R331	Salmonella_phage	2.1e-82	78.7
QAZ29329.1\|2919830_2920220_-\|head,tail	head-tail adaptor	A0A0M3ULK0	Salmonella_phage	2.1e-68	98.4
QAZ29330.1\|2920206_2920761_-	hypothetical protein	A0A0M4S631	Salmonella_phage	1.4e-94	99.5
QAZ29331.1\|2920757_2921165_-	DUF4054 domain-containing protein	A0A0M5M3S2	Salmonella_phage	3.0e-70	96.3
QAZ29332.1\|2921130_2921520_-	hypothetical protein	A0A0M4RTX5	Salmonella_phage	4.0e-32	62.0
QAZ29333.1\|2921561_2922503_-	hypothetical protein	A0A0M3ULD3	Salmonella_phage	3.1e-179	99.7
QAZ29334.1\|2922514_2923012_-	hypothetical protein	A0A0M4QWZ6	Salmonella_phage	8.7e-88	99.4
QAZ29335.1\|2923016_2924249_-	DUF2213 domain-containing protein	A0A0M4R5A6	Salmonella_phage	3.7e-228	99.3
QAZ31289.1\|2924252_2924792_-\|head	phage head morphogenesis protein	A0A0M4REK0	Salmonella_phage	4.5e-82	91.0
QAZ29336.1\|2924883_2926353_-	hypothetical protein	A0A0M4S6U1	Salmonella_phage	1.3e-280	99.2
QAZ29337.1\|2926352_2927975_-	TerL protein	A0A0M5M1R6	Salmonella_phage	0.0e+00	99.4
QAZ29338.1\|2927977_2928607_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	1.5e-108	98.1
QAZ31290.1\|2929107_2929563_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	1.3e-53	76.8
QAZ29339.1\|2929880_2930420_-	lysozyme	K7PLY1	Enterobacteria_phage	4.0e-78	74.1
QAZ31291.1\|2930397_2930700_-	alpha/beta hydrolase	NA	NA	NA	NA
QAZ29340.1\|2930902_2931091_-	hypothetical protein	NA	NA	NA	NA
QAZ29341.1\|2931483_2932062_-	DUF1133 domain-containing protein	A0A0U2S606	Escherichia_phage	2.4e-44	52.0
QAZ29342.1\|2932058_2932352_-	DUF1364 domain-containing protein	A0A0U2KD41	Escherichia_phage	2.1e-33	65.3
QAZ29343.1\|2932348_2932945_-	DUF1367 domain-containing protein	H9C173	Pectobacterium_phage	1.5e-81	73.7
QAZ29344.1\|2933013_2933205_-	hypothetical protein	NA	NA	NA	NA
QAZ29345.1\|2933388_2933727_-	hypothetical protein	A0A193GYX4	Enterobacter_phage	3.7e-50	86.6
QAZ29346.1\|2933726_2933897_-	methyltransferase	I6S1S6	Salmonella_phage	6.3e-06	87.5
QAZ29347.1\|2933893_2934496_-	adenine methylase	G9L699	Escherichia_phage	1.7e-98	87.3
QAZ29348.1\|2934488_2934737_-	hypothetical protein	NA	NA	NA	NA
QAZ29349.1\|2934740_2935421_-	hypothetical protein	NA	NA	NA	NA
QAZ29350.1\|2935458_2936847_-	replicative DNA helicase	Q76H51	Enterobacteria_phage	1.2e-105	47.1
QAZ29351.1\|2936843_2937824_-	helix-turn-helix domain-containing protein	H9C164	Pectobacterium_phage	2.3e-44	80.6
QAZ29352.1\|2937826_2938051_-	hypothetical protein	H9C163	Pectobacterium_phage	1.0e-08	44.7
QAZ29353.1\|2938073_2938520_-	hypothetical protein	H9C162	Pectobacterium_phage	5.5e-25	50.4
QAZ31292.1\|2938454_2938670_+	hypothetical protein	NA	NA	NA	NA
QAZ29354.1\|2938584_2938818_-	XRE family transcriptional regulator	A0A0U2S629	Escherichia_phage	6.2e-12	48.6
QAZ29355.1\|2938916_2939381_+	transcriptional regulator	A0A0U2QW76	Escherichia_phage	2.7e-35	51.7
QAZ29356.1\|2940065_2940389_+	hypothetical protein	NA	NA	NA	NA
QAZ29357.1\|2940396_2940642_+	hypothetical protein	A0A1B1W282	Salmonella_phage	3.5e-13	53.8
QAZ29358.1\|2940671_2942936_+	hypothetical protein	H9C157	Pectobacterium_phage	1.5e-102	34.7
QAZ29359.1\|2942932_2943487_+	hypothetical protein	H9C156	Pectobacterium_phage	1.3e-47	59.3
QAZ29360.1\|2943489_2943672_+	hypothetical protein	NA	NA	NA	NA
QAZ29361.1\|2943721_2943919_+	hypothetical protein	H9C154	Pectobacterium_phage	8.3e-10	58.5
QAZ29362.1\|2943884_2944109_+	DUF4224 domain-containing protein	NA	NA	NA	NA
QAZ29363.1\|2944109_2945129_+\|integrase	integrase	A0A192Y7M7	Salmonella_phage	1.2e-91	53.5
QAZ29364.1\|2945716_2946376_+	transmembrane protein	A0A2H4JFM9	uncultured_Caudovirales_phage	2.7e-44	52.4
QAZ29365.1\|2946462_2946792_+	sulfurtransferase TusE	NA	NA	NA	NA
QAZ29366.1\|2946788_2947070_-	acylphosphatase	NA	NA	NA	NA
QAZ29367.1\|2947118_2947898_-	AraC family transcriptional regulator	NA	NA	NA	NA
QAZ29368.1\|2947923_2948472_-	YbhB/YbcL family Raf kinase inhibitor-like protein	NA	NA	NA	NA
QAZ29369.1\|2948686_2949898_+	ribosomal RNA large subunit methyltransferase I	NA	NA	NA	NA
QAZ29370.1\|2949955_2950273_+	heat-shock protein HspQ	NA	NA	NA	NA
QAZ29371.1\|2950317_2950734_-	CoA-binding protein	NA	NA	NA	NA
QAZ29372.1\|2950904_2951567_+	hypothetical protein	NA	NA	NA	NA
QAZ29373.1\|2951661_2952120_+	methylglyoxal synthase	NA	NA	NA	NA
QAZ29374.1\|2952155_2954210_-	DNA helicase IV	A7KV33	Bacillus_phage	1.1e-19	27.6
QAZ29375.1\|2954333_2954780_+	YccF domain-containing protein	NA	NA	NA	NA
QAZ29376.1\|2954798_2956952_+	TIGR01666 family membrane protein	NA	NA	NA	NA
QAZ29377.1\|2956938_2957544_-	DNA transformation protein	NA	NA	NA	NA
QAZ29378.1\|2957760_2958270_+	cell division inhibitor SulA	NA	NA	NA	NA
QAZ29379.1\|2958626_2959679_+	porin OmpA	NA	NA	NA	NA
QAZ29380.1\|2959750_2960203_-	macrodomain Ter protein	NA	NA	NA	NA
QAZ29381.1\|2960388_2962149_+\|protease	Lon protease family protein	NA	NA	NA	NA
QAZ29382.1\|2962217_2962736_+	beta-hydroxydecanoyl-ACP dehydratase	NA	NA	NA	NA
QAZ29383.1\|2962835_2963003_-	ribosome modulation factor	NA	NA	NA	NA
QAZ29384.1\|2963258_2963822_-	hypothetical protein	NA	NA	NA	NA
QAZ29385.1\|2963818_2965459_-	paraquat-inducible protein B	NA	NA	NA	NA
QAZ29386.1\|2965463_2966717_-	paraquat-inducible protein A	NA	NA	NA	NA
QAZ29387.1\|2966731_2968639_-	ABC transporter ATP-binding protein	A0A2K9L3Z8	Tupanvirus	2.4e-53	29.8
2968509:2968528	attL	NA	NA	NA	NA
QAZ29388.1\|2968651_2970760_-	ribosomal RNA large subunit methyltransferase K/L	NA	NA	NA	NA
QAZ29389.1\|2970858_2971968_+	hypothetical protein	NA	NA	NA	NA
QAZ29390.1\|2971964_2972507_-	cell division protein ZapC	NA	NA	NA	NA
QAZ29391.1\|2972672_2973683_-	dihydroorotate dehydrogenase (quinone)	NA	NA	NA	NA
QAZ29392.1\|2973890_2976503_-	aminopeptidase N	A0A0P0IY26	Acinetobacter_phage	4.8e-20	22.8
QAZ29393.1\|2976929_2977121_+	DNA-damage-inducible protein I	S4TNM0	Salmonella_phage	6.2e-26	95.2
QAZ29394.1\|2977391_2978078_+	virulence protein	NA	NA	NA	NA
QAZ29395.1\|2978062_2978362_+	hypothetical protein	NA	NA	NA	NA
QAZ29396.1\|2978430_2979057_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	63.2
QAZ29397.1\|2979704_2980673_-	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	7.1e-195	100.0
QAZ29398.1\|2981148_2981730_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.7e-95	89.5
QAZ29399.1\|2981729_2984168_-\|tail	phage tail protein	A0A0K2FIZ6	Escherichia_phage	2.9e-91	63.4
QAZ29400.1\|2984221_2984464_-	hypothetical protein	NA	NA	NA	NA
QAZ29401.1\|2984502_2987853_-	host specificity protein J	A0A0K2FI38	Escherichia_phage	0.0e+00	68.6
QAZ29402.1\|2987924_2988629_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.2e-67	62.6
QAZ29403.1\|2988526_2989264_-\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.6e-114	76.1
QAZ29404.1\|2989273_2989969_-\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.3e-89	66.7
QAZ29405.1\|2990058_2990592_+	superoxide dismutase [Cu-Zn] SodC1	Q9MC02	Salmonella_phage	1.8e-46	54.0
QAZ29406.1\|2990708_2991206_-	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.4e-16	36.6
QAZ29407.1\|2991304_2991637_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	3.3e-35	61.5
QAZ31293.1\|2991633_2994621_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	8.2e-266	62.1
QAZ29408.1\|2994700_2995030_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
QAZ29409.1\|2995026_2995425_-\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
QAZ29410.1\|2995470_2996220_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	3.7e-90	68.6
QAZ29411.1\|2996231_2996633_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	1.5e-42	60.9
QAZ29412.1\|2996629_2997196_-\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
QAZ29413.1\|2997176_2997476_-	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
QAZ29414.1\|2997468_2997792_-	recombinase RecA	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
QAZ31295.1\|2997882_2999964_-	peptidase S14	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
QAZ31294.1\|2999887_3001405_-\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	1.5e-175	65.1
QAZ29415.1\|3001431_3001638_-	primosomal replication protein PriB/PriC domain protein	A0A1W6JT66	Pseudomonas_phage	2.9e-05	53.3
QAZ29416.1\|3001634_3003773_-	DNA packaging protein	A5LH27	Enterobacteria_phage	3.4e-290	72.6
QAZ29417.1\|3003729_3004263_-	DNA breaking-rejoining protein	A0A291AWV8	Escherichia_phage	1.0e-33	48.1
QAZ31297.1\|3004470_3004950_-\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
QAZ29418.1\|3004967_3005420_-	lysozyme	A0A0M4R365	Salmonella_phage	2.3e-79	97.3
QAZ31296.1\|3005403_3005733_-\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
QAZ29419.1\|3006008_3006695_+\|protease	type III secretion system effector protease GtgA	Q9MBM0	Phage_Gifsy-2	2.1e-132	100.0
QAZ29420.1\|3007055_3007505_+	hypothetical protein	NA	NA	NA	NA
QAZ29421.1\|3007640_3007766_-	hypothetical protein	NA	NA	NA	NA
QAZ29422.1\|3007939_3008257_-	hypothetical protein	NA	NA	NA	NA
QAZ29423.1\|3008323_3009121_-	antitermination protein	A0A0M4S661	Salmonella_phage	2.3e-151	99.6
QAZ29424.1\|3009110_3009257_-	hypothetical protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
QAZ29425.1\|3009253_3009865_-	protein NinG	A0A0M4RU10	Salmonella_phage	6.9e-79	91.6
QAZ29426.1\|3009867_3010074_-	hypothetical protein	S4TNP0	Salmonella_phage	3.5e-35	100.0
QAZ29427.1\|3010073_3010676_-	hypothetical protein	S4TTI0	Salmonella_phage	8.3e-109	98.5
QAZ29428.1\|3010758_3010980_-	hypothetical protein	NA	NA	NA	NA
QAZ29429.1\|3011091_3011325_-	DinI family protein	H6WRY5	Salmonella_phage	2.1e-36	98.7
QAZ29430.1\|3011616_3011907_-	hypothetical protein	NA	NA	NA	NA
QAZ29431.1\|3011984_3012296_-	hypothetical protein	A0A220NQV2	Salmonella_phage	7.2e-32	97.2
QAZ29432.1\|3012292_3012640_-	DNA-binding protein	H6WRX9	Salmonella_phage	5.4e-52	89.6
QAZ29433.1\|3012650_3013400_-	DNA replication protein DnaC	S4TNF5	Salmonella_phage	3.6e-138	99.6
QAZ29434.1\|3014448_3014823_-	hypothetical protein	S4TTD7	Salmonella_phage	3.9e-64	99.2
QAZ29435.1\|3014788_3015028_-	helix-turn-helix domain-containing protein	H6WRX5	Salmonella_phage	8.3e-12	47.2
QAZ29436.1\|3015147_3015558_+	transcriptional regulator	A0A1B5FPF4	Escherichia_phage	8.1e-07	42.4
QAZ29437.1\|3015607_3015868_+	hypothetical protein	NA	NA	NA	NA
QAZ29438.1\|3015860_3016019_+	hypothetical protein	H6WRX3	Salmonella_phage	1.2e-22	98.1
QAZ29439.1\|3016040_3016340_+	DNA breaking-rejoining protein	S4TSN6	Salmonella_phage	8.1e-49	84.5
QAZ29440.1\|3016466_3019352_+	exodeoxyribonuclease	S4TNL0	Salmonella_phage	0.0e+00	97.3
QAZ29441.1\|3019314_3020472_+	enterohemolysin	S4TTE8	Salmonella_phage	1.6e-217	100.0
QAZ29442.1\|3020514_3020754_+	DUF4060 domain-containing protein	S4TR31	Salmonella_phage	2.0e-37	100.0
QAZ29443.1\|3020794_3021043_+	excisionase	S4TND0	Salmonella_phage	4.7e-42	100.0
QAZ29444.1\|3021087_3022380_+\|integrase	integrase	S4TSP2	Salmonella_phage	1.0e-252	99.8
QAZ29445.1\|3022574_3023777_+	nicotinate phosphoribosyltransferase	NA	NA	NA	NA
QAZ29446.1\|3023857_3025291_-	sodium:alanine symporter family protein	NA	NA	NA	NA
QAZ29447.1\|3025536_3026751_-	diaminopropionate ammonia-lyase	NA	NA	NA	NA
QAZ29448.1\|3026837_3027071_+	hypothetical protein	NA	NA	NA	NA
QAZ29449.1\|3027067_3027529_+	Lrp/AsnC family transcriptional regulator	NA	NA	NA	NA
QAZ29450.1\|3027729_3029130_+\|tRNA	asparagine--tRNA ligase	A0A167RLM0	Powai_lake_megavirus	4.5e-81	35.1
3040282:3040301	attR	NA	NA	NA	NA

DBSCAN-SWA_9

3089069 : 3167408

Salmonella_phage(65.45%)

tRNA,integrase,head,plate,capsid,portal,tail,protease

attL 3134196:3134212|attR 3167483:3167499

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ29492.1\|3089069_3089774_+\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
QAZ29493.1\|3089774_3090158_+	hypothetical protein	NA	NA	NA	NA
QAZ29494.1\|3090085_3090304_+	translation initiation factor IF-1	NA	NA	NA	NA
QAZ29495.1\|3090394_3091306_-	LysR family transcriptional regulator	NA	NA	NA	NA
QAZ29496.1\|3091414_3092275_+	pirin family protein	NA	NA	NA	NA
QAZ29497.1\|3092294_3092972_+	hydrolase	NA	NA	NA	NA
QAZ29498.1\|3093560_3093938_+\|integrase	integrase	A0A077KET4	Ralstonia_phage	5.9e-20	42.7
QAZ29499.1\|3094099_3094297_+	hypothetical protein	NA	NA	NA	NA
QAZ29500.1\|3094510_3096787_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
QAZ29501.1\|3096817_3097138_-\|protease	ATP-dependent Clp protease adaptor ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
QAZ29502.1\|3097461_3097683_+	cold shock domain protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
QAZ29503.1\|3097637_3097832_-	hypothetical protein	NA	NA	NA	NA
QAZ29504.1\|3097812_3099759_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	9.1e-40	42.3
QAZ29505.1\|3099755_3100874_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.8e-08	38.9
QAZ29506.1\|3101001_3101970_+	DUF535 domain-containing protein	NA	NA	NA	NA
QAZ29507.1\|3101966_3103625_-	ATP-dependent endonuclease	NA	NA	NA	NA
QAZ31301.1\|3103660_3103849_-	hypothetical protein	NA	NA	NA	NA
QAZ29508.1\|3103826_3104726_+	DUF340 domain-containing protein	NA	NA	NA	NA
QAZ29509.1\|3104869_3106522_+	hydroxylamine reductase	NA	NA	NA	NA
QAZ29510.1\|3106533_3107502_+	NADH oxidoreductase	NA	NA	NA	NA
QAZ29511.1\|3107659_3109378_+	ubiquinone-dependent pyruvate dehydrogenase	A0A0P0YLY7	Yellowstone_lake_phycodnavirus	1.7e-29	24.4
QAZ29512.1\|3109416_3110418_+	low-specificity L-threonine aldolase	NA	NA	NA	NA
QAZ29513.1\|3110428_3111862_+	DUF2867 domain-containing protein	NA	NA	NA	NA
QAZ29514.1\|3111957_3112971_+	NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
QAZ29515.1\|3112967_3113798_-	N-acetylmuramoyl-L-alanine amidase	A0A1B0UZW5	Roseobacter_phage	2.3e-08	30.7
QAZ29516.1\|3113794_3114118_-	hypothetical protein	NA	NA	NA	NA
QAZ29517.1\|3114245_3114761_+	lipoprotein	NA	NA	NA	NA
QAZ29518.1\|3114990_3115719_+	arginine ABC transporter ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	5.1e-28	35.8
QAZ29519.1\|3115736_3116468_+	arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA
QAZ29520.1\|3116474_3117191_+	arginine transporter permease subunit ArtQ	NA	NA	NA	NA
QAZ29521.1\|3117190_3117859_+	arginine transporter permease subunit ArtM	NA	NA	NA	NA
QAZ29522.1\|3118095_3118827_+	arginine/ornithine ABC transporter substrate-binding protein	NA	NA	NA	NA
QAZ29523.1\|3118848_3119052_+	hypothetical protein	NA	NA	NA	NA
QAZ29524.1\|3119044_3120532_-	sulfatase	NA	NA	NA	NA
QAZ29525.1\|3120541_3120862_-	PTS sugar transporter IIB	NA	NA	NA	NA
QAZ29526.1\|3120891_3122235_-	PTS ascorbate transporter subunit IIC	NA	NA	NA	NA
QAZ29527.1\|3122517_3123648_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A1X9I6F4	Streptococcus_phage	1.2e-23	25.8
QAZ31302.1\|3123690_3124164_-	DUF2593 domain-containing protein	NA	NA	NA	NA
QAZ29528.1\|3124237_3125083_-	putrescine ABC transporter permease PotI	NA	NA	NA	NA
QAZ29529.1\|3125079_3126033_-	putrescine ABC transporter permease	NA	NA	NA	NA
QAZ29530.1\|3126042_3127176_-	polyamine ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	6.5e-30	34.9
QAZ29531.1\|3127263_3128376_-	spermidine/putrescine ABC transporter substrate-binding protein PotF	NA	NA	NA	NA
QAZ29532.1\|3128724_3129201_-	YbjN domain-containing protein	NA	NA	NA	NA
QAZ29533.1\|3129296_3130199_-	30S ribosomal protein S6--L-glutamate ligase	A0A1D7SR78	Cyanophage	3.5e-34	34.0
QAZ29534.1\|3130256_3130979_-	NADPH-dependent oxidoreductase	NA	NA	NA	NA
QAZ29535.1\|3130962_3131253_-	hypothetical protein	NA	NA	NA	NA
QAZ29536.1\|3131422_3131686_+	glutaredoxin	A0A2I7SAE2	Vibrio_phage	5.9e-27	70.5
QAZ29537.1\|3131717_3132095_-	hypothetical protein	NA	NA	NA	NA
QAZ29538.1\|3132365_3134051_+	transporter	NA	NA	NA	NA
3134196:3134212	attL	NA	NA	NA	NA
QAZ29539.1\|3134286_3134505_-	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-20	69.0
QAZ29540.1\|3134595_3135696_-	late control protein D	A0A1S6KZZ5	Salmonella_phage	1.7e-176	88.0
QAZ29541.1\|3135692_3136178_-\|tail	phage tail protein	E5G6Q2	Salmonella_phage	6.3e-67	80.6
QAZ29542.1\|3136174_3139252_-\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	62.7
QAZ29543.1\|3139244_3139364_-\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
QAZ29544.1\|3139378_3139681_-\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
QAZ29545.1\|3139735_3140251_-\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	4.8e-89	94.7
QAZ29546.1\|3140260_3141433_-\|tail	phage tail protein	A0A1S6KZY7	Salmonella_phage	2.1e-204	90.3
QAZ29547.1\|3141575_3142142_-	DNA-invertase	A0A1S6L009	Salmonella_phage	1.9e-86	84.8
QAZ29548.1\|3142172_3142679_+	hypothetical protein	NA	NA	NA	NA
QAZ29549.1\|3142681_3143092_+\|tail	tail fiber assembly protein	B6SCW7	Bacteriophage	2.2e-20	43.3
QAZ29550.1\|3143072_3143306_-	hypothetical protein	NA	NA	NA	NA
QAZ29551.1\|3143308_3144793_-\|tail	phage tail protein	M1TAS6	Escherichia_phage	6.7e-152	78.1
QAZ29552.1\|3144789_3145395_-\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.4e-110	92.0
QAZ29553.1\|3145387_3146296_-\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	1.6e-143	90.7
QAZ29554.1\|3146282_3146642_-\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	2.8e-51	86.6
QAZ29555.1\|3146638_3147217_-\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	1.1e-94	87.5
QAZ29556.1\|3147285_3147732_-	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	1.3e-61	84.2
QAZ29557.1\|3147724_3148156_-\|tail	phage tail protein	E5G6N3	Salmonella_phage	2.9e-71	93.0
QAZ29558.1\|3148118_3148322_-	hypothetical protein	A0A1S6KZX6	Salmonella_phage	1.0e-23	76.1
QAZ29559.1\|3148251_3148680_-	hypothetical protein	E5G6N2	Salmonella_phage	1.4e-46	75.9
QAZ29560.1\|3148676_3149054_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	3.9e-16	40.0
QAZ31303.1\|3149055_3149529_-	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
QAZ29561.1\|3149548_3149764_-	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
QAZ29562.1\|3149767_3149971_-\|tail	phage tail protein	E5G6M9	Salmonella_phage	1.4e-31	92.5
QAZ29563.1\|3149970_3150435_-\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	1.9e-76	89.0
QAZ29564.1\|3150530_3151181_-	hypothetical protein	E5G6M7	Salmonella_phage	8.7e-112	96.3
QAZ29565.1\|3151184_3152243_-\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	2.9e-181	93.4
QAZ29566.1\|3152259_3153093_-\|capsid	capsid protein	A0A1S6KZW9	Salmonella_phage	2.2e-123	91.3
QAZ29567.1\|3153235_3155002_+	oxidoreductase	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.3
QAZ29568.1\|3155001_3156033_+\|portal	phage portal protein	A0A1S6KZW5	Salmonella_phage	3.8e-170	88.2
QAZ29569.1\|3156084_3156831_-	hypothetical protein	S5W9H2	Leptospira_phage	3.6e-05	39.1
QAZ29570.1\|3156832_3157651_-	hypothetical protein	NA	NA	NA	NA
QAZ29571.1\|3157978_3158284_-	DinI family protein	E5G6M1	Salmonella_phage	4.7e-36	100.0
QAZ31304.1\|3158222_3158411_-	hypothetical protein	E5G6M0	Salmonella_phage	5.5e-27	98.4
QAZ29572.1\|3158564_3160979_-	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	98.0
QAZ29573.1\|3160975_3161833_-	DNA adenine methylase	E5G6L8	Salmonella_phage	9.5e-159	95.8
QAZ29574.1\|3161829_3162057_-	hypothetical protein	E5G6L7	Salmonella_phage	7.8e-36	98.7
QAZ29575.1\|3162056_3162290_-	DUF2732 domain-containing protein	E5G6L6	Salmonella_phage	1.9e-32	97.4
QAZ29576.1\|3162357_3162699_-	hypothetical protein	E5G6L5	Salmonella_phage	1.7e-55	98.2
QAZ29577.1\|3162816_3163113_-	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	1.9e-21	88.5
QAZ29578.1\|3163120_3163630_-	hypothetical protein	E5G6L3	Salmonella_phage	1.3e-86	98.2
QAZ29579.1\|3163662_3163884_-	regulator	NA	NA	NA	NA
QAZ29580.1\|3163979_3164576_+	hypothetical protein	A0A1S6KZZ7	Salmonella_phage	1.2e-40	43.9
QAZ29581.1\|3164596_3166273_+	DUF4041 domain-containing protein	A0A142LP25	Marinitoga_camini_virus	1.7e-82	66.8
QAZ29582.1\|3166355_3167408_+\|integrase	integrase	A0A218M4I3	Erwinia_phage	2.7e-107	57.3
3167483:3167499	attR	NA	NA	NA	NA

DBSCAN-SWA_10

3210011 : 3295442

106

Salmonella_phage(38.24%)

integrase,coat,head,portal,terminase,tail,protease,lysis

attL 3258358:3258382|attR 3295508:3295532

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ29619.1\|3210011_3210527_-\|protease	outer membrane protease	A5LH44	Enterobacteria_phage	1.1e-16	34.2
QAZ29620.1\|3210880_3211768_+	threonine/homoserine exporter RhtA	NA	NA	NA	NA
QAZ29621.1\|3212070_3212574_+	DNA starvation/stationary phase protection protein	A0A222YYG6	Streptomyces_phage	7.1e-05	23.0
QAZ29622.1\|3213050_3213797_+	glutamine ABC transporter substrate-binding protein GlnH	NA	NA	NA	NA
QAZ29623.1\|3213942_3214602_+	glutamine ABC transporter permease GlnP	NA	NA	NA	NA
QAZ29624.1\|3214598_3215321_+	glutamine ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.9e-35	43.2
QAZ29625.1\|3215439_3217662_+	mechanosensitive channel protein	NA	NA	NA	NA
QAZ29626.1\|3217658_3218585_-	ribosomal RNA large subunit methyltransferase F	NA	NA	NA	NA
QAZ29627.1\|3218789_3219056_+	DksA/TraR family C4-type zinc finger protein	E5E4B1	Acinetobacter_phage	2.2e-13	52.8
QAZ29628.1\|3219340_3219601_+	hypothetical protein	NA	NA	NA	NA
QAZ29629.1\|3219756_3220731_-	DNA-binding protein YbiB	NA	NA	NA	NA
QAZ29630.1\|3220760_3222905_-	ATP-dependent helicase DinG	A0A127AW80	Bacillus_phage	7.4e-43	26.7
QAZ29631.1\|3223112_3224474_-	ATP-dependent RNA helicase RhlE	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	2.9e-53	34.2
QAZ29632.1\|3224703_3225378_+	transcriptional regulator	NA	NA	NA	NA
QAZ29633.1\|3225377_3226373_+	secretion protein HlyD	NA	NA	NA	NA
QAZ29634.1\|3226365_3228102_+	ABC transporter ATP-binding protein	W6JKT0	Anomala_cuprea_entomopoxvirus	1.3e-18	30.3
QAZ29635.1\|3228094_3229225_+	ABC transporter permease	NA	NA	NA	NA
QAZ29636.1\|3229340_3230447_+	ABC transporter permease	NA	NA	NA	NA
QAZ29637.1\|3230408_3230819_-	hypothetical protein	NA	NA	NA	NA
QAZ29638.1\|3230951_3231710_+	EEP domain-containing protein	NA	NA	NA	NA
QAZ29639.1\|3231706_3232948_+	cardiolipin synthase B	NA	NA	NA	NA
QAZ29640.1\|3232947_3233910_+	lysylphosphatidylglycerol synthetase family protein	NA	NA	NA	NA
QAZ29641.1\|3233912_3234473_-	hypothetical protein	NA	NA	NA	NA
QAZ29642.1\|3234480_3235089_-	hypothetical protein	NA	NA	NA	NA
QAZ29643.1\|3235112_3235820_-	hypothetical protein	NA	NA	NA	NA
QAZ29644.1\|3235965_3236670_-	BAX inhibitor (BI)-1/YccA family protein	NA	NA	NA	NA
QAZ29645.1\|3236717_3237170_-	molybdopterin synthase catalytic subunit	NA	NA	NA	NA
QAZ29646.1\|3237171_3237423_-	molybdopterin synthase sulfur carrier subunit	NA	NA	NA	NA
QAZ29647.1\|3237409_3237895_-	cyclic pyranopterin monophosphate synthase MoaC	NA	NA	NA	NA
QAZ29648.1\|3237897_3238410_-	molybdenum cofactor biosynthesis protein B	NA	NA	NA	NA
QAZ29649.1\|3238431_3239421_-	cyclic pyranopterin monophosphate synthase	NA	NA	NA	NA
QAZ29650.1\|3239817_3240726_+	hypothetical protein	A1IMD5	Streptococcus_phage	6.0e-26	29.9
QAZ29651.1\|3240817_3243085_-	SPI-1 type III secretion system effector E3 ubiquitin transferase SlrP	Q9MBL9	Phage_Gifsy-2	4.1e-15	42.1
QAZ29652.1\|3243092_3243266_-	hypothetical protein	NA	NA	NA	NA
QAZ29653.1\|3243574_3245596_-	excinuclease ABC subunit B	NA	NA	NA	NA
QAZ29654.1\|3245592_3245820_-	hypothetical protein	NA	NA	NA	NA
QAZ29655.1\|3246246_3246933_-	dethiobiotin synthase	NA	NA	NA	NA
QAZ29656.1\|3246925_3247681_-	malonyl-[acyl-carrier protein] O-methyltransferase BioC	NA	NA	NA	NA
QAZ29657.1\|3247664_3248822_-	8-amino-7-oxononanoate synthase	NA	NA	NA	NA
QAZ29658.1\|3248818_3249859_-	biotin synthase	NA	NA	NA	NA
QAZ31307.1\|3249945_3251235_+	adenosylmethionine--8-amino-7-oxononanoate transaminase	A0A1V0SKB7	Klosneuvirus	7.7e-19	28.5
QAZ29659.1\|3251292_3251769_+	kinase inhibitor	NA	NA	NA	NA
QAZ29660.1\|3251853_3253374_-	histidine ammonia-lyase	A0A1V0S940	Catovirus	1.7e-81	40.0
QAZ29661.1\|3253375_3255061_-	urocanate hydratase	NA	NA	NA	NA
QAZ29662.1\|3255257_3255983_-	histidine utilization repressor	NA	NA	NA	NA
QAZ29663.1\|3256027_3256969_-	formimidoylglutamase	NA	NA	NA	NA
QAZ29664.1\|3256965_3258189_-	imidazolonepropionase	NA	NA	NA	NA
3258358:3258382	attL	NA	NA	NA	NA
QAZ29665.1\|3258650_3260507_-\|tail	phage tail protein	S4TVJ1	Salmonella_phage	2.3e-274	90.1
QAZ29666.1\|3260544_3260775_-	hypothetical protein	NA	NA	NA	NA
QAZ29667.1\|3260791_3262783_-	DNA transfer protein	A0A1R3Y5Q1	Salmonella_virus	0.0e+00	96.6
QAZ29668.1\|3262782_3264078_-	acyltransferase	Q716G3	Shigella_phage	2.1e-181	84.0
QAZ29669.1\|3264087_3264780_-	DNA transfer protein	G5DA80	Enterobacteria_phage	2.7e-111	99.6
QAZ29670.1\|3264782_3265238_-	hypothetical protein	I1TEJ3	Salmonella_phage	4.4e-86	98.7
QAZ29671.1\|3265237_3265939_-\|tail	phage tail protein	C6ZR14	Salmonella_phage	4.7e-71	92.3
QAZ29672.1\|3265942_3267361_-	hypothetical protein	A0A075B8I2	Enterobacteria_phage	3.9e-274	98.3
QAZ29673.1\|3267370_3267832_-\|head	head DNA stabilization protein	A5VW70	Enterobacteria_phage	7.1e-84	100.0
QAZ29674.1\|3267812_3268001_-	hypothetical protein	A5VW71	Enterobacteria_phage	2.9e-28	100.0
QAZ29675.1\|3268042_3269296_-\|coat	coat protein	A0A088CQ56	Enterobacteria_phage	1.0e-233	98.3
QAZ29676.1\|3269314_3270208_-	scaffolding protein	A0A088CPT0	Enterobacteria_phage	2.6e-114	84.2
QAZ29677.1\|3270298_3272497_-\|portal	portal protein	A0A088CQ69	Enterobacteria_phage	0.0e+00	97.3
QAZ29678.1\|3272498_3273914_-\|terminase	PBSX family phage terminase large subunit	A5VW75	Enterobacteria_phage	3.2e-276	99.2
QAZ31308.1\|3273910_3274333_-	ubiquitin carboxyl-hydrolase	Q716H4	Shigella_phage	3.6e-74	99.3
QAZ29679.1\|3274356_3274536_-	hypothetical protein	Q9AZ02	Salmonella_phage	2.1e-23	93.2
QAZ29680.1\|3274537_3274780_-	hypothetical protein	A0A0M4R322	Salmonella_phage	8.3e-36	98.8
QAZ29681.1\|3275075_3275603_-	DUF2829 domain-containing protein	A0A1B0VMG3	Pseudomonas_phage	3.3e-45	54.6
QAZ29682.1\|3275681_3276119_-\|lysis	lysis protein	A0A2I6PIF7	Escherichia_phage	6.5e-71	97.9
QAZ31309.1\|3276207_3276705_-	lysozyme	I6R0P2	Salmonella_phage	9.9e-92	100.0
QAZ29683.1\|3276682_3276886_-	hypothetical protein	I6R0S9	Salmonella_phage	1.1e-33	100.0
QAZ29684.1\|3277349_3277868_-	antiterminator	Q716B8	Shigella_phage	2.2e-94	98.8
QAZ29685.1\|3277858_3278530_-	serine/threonine protein phosphatase	Q5TJL8	Enterobacteria_phage	2.0e-127	95.5
QAZ29686.1\|3278526_3279135_-	protein NinG	I6S604	Salmonella_phage	2.9e-93	95.0
QAZ29687.1\|3279109_3279289_-	NinF family protein	I6R994	Salmonella_phage	1.1e-27	94.9
QAZ29688.1\|3279285_3279462_-	NinE family protein	Q5G8S3	Enterobacteria_phage	3.0e-27	100.0
QAZ29689.1\|3279428_3279602_-	protein ninD	C6ZR56	Salmonella_phage	5.2e-32	100.0
QAZ29690.1\|3279598_3280036_-	recombination protein NinB	A0A192Y6T2	Salmonella_phage	9.4e-78	98.6
QAZ29691.1\|3280050_3280257_-	hypothetical protein	I1TEG6	Salmonella_phage	2.7e-35	98.5
QAZ29692.1\|3280260_3280512_-	hypothetical protein	A0A220NQX3	Salmonella_phage	2.9e-23	65.5
QAZ29693.1\|3280523_3280724_-	hypothetical protein	Q716C9	Shigella_phage	4.6e-32	100.0
QAZ29694.1\|3280720_3281047_-	hypothetical protein	Q716D0	Shigella_phage	4.2e-59	99.1
QAZ29695.1\|3281119_3281389_-	hypothetical protein	G9L682	Escherichia_phage	1.9e-44	98.9
QAZ29696.1\|3281385_3281676_-	hypothetical protein	K7PH23	Enterobacteria_phage	2.5e-50	100.0
QAZ29697.1\|3281672_3282518_-	ATP-binding protein	K7PLU3	Enterobacteria_phage	2.1e-110	73.6
QAZ29698.1\|3282520_3283363_-	replication protein	K7PGT1	Enterobacteria_phage	1.0e-128	94.2
QAZ29699.1\|3283349_3283994_-	hypothetical protein	NA	NA	NA	NA
QAZ31310.1\|3284028_3284307_-	hypothetical protein	Q8VNP9	Enterobacteria_phage	3.6e-43	100.0
QAZ29700.1\|3284415_3284610_-	Cro/Cl family transcriptional regulator	K7PLQ6	Enterobacteria_phage	1.8e-28	100.0
QAZ29701.1\|3284716_3285433_+	peptidase S24	K7PGR7	Enterobacteria_phage	9.2e-123	100.0
QAZ29702.1\|3285451_3285820_+	hypothetical protein	K7PJJ3	Enterobacteria_phage	1.3e-56	100.0
QAZ29703.1\|3286187_3286493_+	hypothetical protein	A5VW99	Enterobacteria_phage	1.3e-25	92.8
QAZ29704.1\|3286763_3286958_+	restriction endonuclease	A0A2H4FS18	Salmonella_phage	2.5e-30	100.0
QAZ31311.1\|3287041_3287998_+	hypothetical protein	Q5G8T6	Enterobacteria_phage	5.6e-75	84.9
QAZ29705.1\|3288192_3288366_+\|protease	protease FtsH-inhibitory lysogeny factor CIII	I6R987	Salmonella_phage	8.9e-24	100.0
QAZ29706.1\|3288346_3288535_+	protein kil	I6S647	Salmonella_phage	3.7e-31	100.0
QAZ29707.1\|3288664_3289372_+	recombinase	B8K1D9	Salmonella_phage	6.7e-134	96.2
QAZ29708.1\|3289372_3289831_+	single-stranded DNA-binding protein	C6ZR36	Salmonella_phage	2.6e-70	89.0
QAZ29709.1\|3289839_3290319_+	hypothetical protein	Q716E9	Shigella_phage	1.6e-86	91.2
QAZ29710.1\|3290327_3290876_+	3'-5' exoribonuclease	C6ZR35	Salmonella_phage	2.1e-106	100.0
QAZ29711.1\|3290891_3291185_+	RecBCD nuclease inhibitor	A0A1V0E5L7	Salmonella_phage	5.5e-50	100.0
QAZ29712.1\|3291195_3291369_+	DUF2737 domain-containing protein	A0A2H4FUQ1	Salmonella_phage	2.1e-25	96.5
QAZ31312.1\|3291380_3291905_+	hypothetical protein	Q5G8U6	Enterobacteria_phage	1.6e-39	64.8
QAZ29713.1\|3291901_3292498_+	hypothetical protein	A0A2H4FRZ0	Salmonella_phage	8.7e-42	55.2
QAZ29714.1\|3292499_3292718_+	sugar acetyltransferase inhibitor	C6ZR28	Salmonella_phage	7.0e-34	97.2
QAZ29715.1\|3292721_3292955_+	hypothetical protein	A0A1V0E5L6	Salmonella_phage	6.0e-15	91.1
QAZ29716.1\|3293024_3293999_+	hypothetical protein	Q5G8V2	Enterobacteria_phage	5.2e-28	44.0
QAZ29717.1\|3294175_3294394_+	excisionase	A0A1V0E5M4	Salmonella_phage	5.7e-36	100.0
QAZ29718.1\|3294371_3295442_+\|integrase	integrase	A0A1V0E5M7	Salmonella_phage	3.0e-154	99.6
3295508:3295532	attR	NA	NA	NA	NA

DBSCAN-SWA_11

4523017 : 4567793

Burkholderia_phage(40.91%)

tail,plate,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ30807.1\|4523017_4524016_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
QAZ30808.1\|4524103_4525414_-	conjugal transfer protein	NA	NA	NA	NA
QAZ30809.1\|4525660_4526176_+	transcriptional regulator Zur	NA	NA	NA	NA
QAZ30810.1\|4526275_4526485_-	CsbD family protein	NA	NA	NA	NA
QAZ31365.1\|4526506_4526620_-	hypothetical protein	NA	NA	NA	NA
QAZ30811.1\|4526616_4527942_-	MATE family efflux transporter	NA	NA	NA	NA
QAZ30812.1\|4528120_4528729_-	LexA repressor	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
QAZ30813.1\|4528837_4529206_-	diacylglycerol kinase	NA	NA	NA	NA
QAZ30814.1\|4529376_4531797_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
QAZ30815.1\|4531895_4532768_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
QAZ30816.1\|4532781_4533279_-	chorismate--pyruvate lyase	NA	NA	NA	NA
QAZ30817.1\|4533459_4534377_-	maltose operon protein MalM	NA	NA	NA	NA
QAZ30818.1\|4534540_4535899_-	maltoporin	NA	NA	NA	NA
QAZ30819.1\|4535987_4537097_-	maltose/maltodextrin import ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	6.2e-17	47.2
QAZ30820.1\|4537458_4538649_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
QAZ30821.1\|4538780_4540325_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
QAZ30822.1\|4540339_4541230_+	maltose ABC transporter permease	NA	NA	NA	NA
QAZ30823.1\|4541395_4541806_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
QAZ30824.1\|4541948_4544045_-	YjbH domain-containing protein	NA	NA	NA	NA
QAZ30825.1\|4544044_4544782_-	hypothetical protein	NA	NA	NA	NA
QAZ30826.1\|4544778_4545417_-	YjbF family lipoprotein	NA	NA	NA	NA
QAZ30827.1\|4545480_4545723_-	outer membrane protein	NA	NA	NA	NA
QAZ30828.1\|4546166_4547816_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
QAZ30829.1\|4548160_4549510_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
QAZ30830.1\|4549640_4549988_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
QAZ30831.1\|4550565_4550853_+	hypothetical protein	Q6QIC8	Burkholderia_phage	2.3e-16	49.1
QAZ30832.1\|4550855_4551461_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	2.5e-60	59.9
QAZ30833.1\|4551473_4551788_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
QAZ30834.1\|4551947_4552403_+	hypothetical protein	NA	NA	NA	NA
QAZ30835.1\|4552399_4552597_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
QAZ30836.1\|4552586_4554014_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	1.8e-194	70.9
QAZ30837.1\|4554013_4554538_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
QAZ30838.1\|4554589_4554907_+\|tail	phage tail assembly protein	NA	NA	NA	NA
QAZ30839.1\|4554866_4554995_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
QAZ30840.1\|4555091_4557446_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	2.8e-67	30.8
QAZ30841.1\|4557445_4558399_+	chemotaxis protein	A4JWL1	Burkholderia_virus	2.3e-36	50.8
QAZ30842.1\|4558398_4558608_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
QAZ30843.1\|4558595_4559639_+	phage protein D	Q6QIA2	Burkholderia_phage	3.2e-76	45.1
QAZ30844.1\|4559648_4560371_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	2.3e-12	42.0
QAZ30845.1\|4560379_4560619_+	hypothetical protein	NA	NA	NA	NA
QAZ30846.1\|4560694_4561057_+	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
QAZ30847.1\|4561053_4561983_+	glycosyltransferase	S5FKN0	Shigella_phage	6.7e-150	83.8
QAZ30848.1\|4561982_4563530_+	hypothetical protein	B9UDL6	Salmonella_phage	1.6e-50	30.4
QAZ30849.1\|4563693_4564053_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
QAZ30850.1\|4564043_4565159_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	5.3e-101	52.2
QAZ30851.1\|4565151_4565784_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
QAZ30852.1\|4565786_4567268_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	1.6e-52	52.7
QAZ30853.1\|4567277_4567793_+\|tail	tail fiber assembly protein	A0A0U2QV64	Escherichia_phage	1.3e-33	40.7

DBSCAN-SWA_12

4716628 : 4752346

Salmonella_phage(45.24%)

holin,integrase,head,plate,terminase,capsid,portal,tail

attL 4716421:4716467|attR 4747400:4747446

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
4716421:4716467	attL	NA	NA	NA	NA
QAZ30972.1\|4716628_4717045_+	hypothetical protein	S4TTB4	Salmonella_phage	1.8e-33	52.3
QAZ30973.1\|4717079_4717298_-	transcriptional regulator	S4TNZ3	Salmonella_phage	4.7e-38	100.0
QAZ30974.1\|4717375_4718545_-	hypothetical protein	S4TRX8	Salmonella_phage	1.4e-205	95.6
QAZ30975.1\|4718541_4719027_-\|tail	phage tail protein	S4TUC3	Salmonella_phage	5.9e-81	94.4
QAZ30976.1\|4719038_4721480_-\|tail	phage tail tape measure protein	A0A0M3UL85	Salmonella_phage	0.0e+00	93.1
QAZ30977.1\|4721472_4721628_-\|tail	GpE family phage tail protein	Q6K1G8	Salmonella_virus	8.8e-23	98.0
QAZ30978.1\|4721624_4721960_-\|tail	phage tail assembly protein	A0A0M4S5P8	Salmonella_phage	1.8e-52	100.0
QAZ30979.1\|4722022_4722541_-\|tail	phage major tail tube protein	S4TNZ0	Salmonella_phage	1.4e-93	99.4
QAZ30980.1\|4722556_4723744_-\|tail	phage tail protein	Q6K1H0	Salmonella_virus	2.0e-223	100.0
QAZ30981.1\|4723878_4724448_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	3.0e-92	86.8
QAZ30982.1\|4724447_4726190_-	hypothetical protein	A0A0M3ULF6	Salmonella_phage	1.5e-267	97.1
QAZ30983.1\|4726200_4726731_-\|tail	phage tail protein I	A0A0M4R4W9	Salmonella_phage	1.9e-104	100.0
QAZ30984.1\|4726723_4727632_-\|plate	baseplate assembly protein	A0A1J0I2M3	Salmonella_phage	1.7e-158	98.7
QAZ30985.1\|4727638_4727986_-\|plate	baseplate assembly protein	A0A0M4RE59	Salmonella_phage	2.1e-56	98.3
QAZ30986.1\|4727982_4728624_-\|plate	phage baseplate assembly protein V	Q6K1H6	Salmonella_virus	2.4e-98	85.0
QAZ30987.1\|4728700_4730077_-	DUF4062 domain-containing protein	NA	NA	NA	NA
QAZ30988.1\|4730081_4730549_-	phage virion morphogenesis protein	O80313	Escherichia_phage	9.8e-49	67.8
QAZ30989.1\|4730541_4731009_-\|tail	phage tail protein	U5N0S7	Enterobacteria_phage	2.2e-56	69.0
QAZ30990.1\|4730971_4731217_-\|holin	holin	S4TNY4	Salmonella_phage	5.5e-27	73.1
QAZ30991.1\|4731116_4731530_-	protein lysB	O80310	Escherichia_phage	8.4e-36	59.9
QAZ30992.1\|4731526_4732036_-	lysozyme	A0A218M4K3	Erwinia_phage	4.6e-76	82.6
QAZ30993.1\|4732019_4732241_-	primosomal protein	A0A218M4L5	Erwinia_phage	8.7e-24	71.2
QAZ30994.1\|4732231_4732435_-\|tail	phage tail protein	U5N3E7	Enterobacteria_phage	8.9e-23	76.1
QAZ30995.1\|4732434_4732935_-\|head	head completion/stabilization protein	U5N0S3	Enterobacteria_phage	3.8e-59	68.5
QAZ30996.1\|4733032_4733791_-\|terminase	terminase	Q94MJ2	Enterobacteria_phage	2.7e-80	67.1
QAZ30997.1\|4733794_4734955_-\|capsid	phage major capsid protein, P2 family	A0A0M4R4W2	Salmonella_phage	2.8e-129	62.5
QAZ30998.1\|4734986_4735850_-\|capsid	capsid scaffolding protein	A0A218M4L9	Erwinia_phage	4.5e-100	64.8
QAZ30999.1\|4736014_4737784_+	oxidoreductase	Q9T0R3	Escherichia_phage	3.2e-286	81.0
QAZ31000.1\|4737783_4738821_+\|portal	phage portal protein	Q6K1J0	Salmonella_virus	7.7e-163	78.7
QAZ31001.1\|4739341_4739533_-	hypothetical protein	S4TRZ0	Salmonella_phage	1.1e-27	100.0
QAZ31002.1\|4739531_4739963_+	hypothetical protein	S4TUD6	Salmonella_phage	1.1e-75	100.0
QAZ31003.1\|4740096_4741137_+	cell filamentation protein Fic	S4TP71	Salmonella_phage	6.3e-197	100.0
QAZ31004.1\|4741133_4741331_-	hypothetical protein	NA	NA	NA	NA
QAZ31371.1\|4741509_4743786_-	replication endonuclease	S4TTC1	Salmonella_phage	0.0e+00	88.0
QAZ31005.1\|4743775_4744051_-	hypothetical protein	M1TAP2	Escherichia_phage	7.0e-31	72.5
QAZ31006.1\|4744047_4744272_-	hypothetical protein	A0A0F7LDG9	Escherichia_phage	2.0e-23	75.7
QAZ31007.1\|4744573_4744798_-	DUF2732 domain-containing protein	Q7Y4C2	Escherichia_virus	3.4e-23	78.4
QAZ31008.1\|4744861_4745362_-	replication protein B	M1SV55	Escherichia_phage	1.8e-85	91.0
QAZ31009.1\|4745531_4745804_-	hypothetical protein	Q1JS36	Enterobacteria_phage	1.0e-42	87.8
QAZ31010.1\|4745940_4746234_+	XRE family transcriptional regulator	Q1JS45	Enterobacteria_phage	1.6e-36	75.3
QAZ31011.1\|4746303_4747284_+\|integrase	integrase	S4TP66	Salmonella_phage	1.5e-179	96.0
QAZ31012.1\|4747468_4747969_-	stress adaptor protein CpxP	NA	NA	NA	NA
4747400:4747446	attR	NA	NA	NA	NA
QAZ31013.1\|4748119_4748818_+	DNA-binding response regulator	Q6XM27	Feldmannia_irregularis_virus	5.3e-06	30.3
QAZ31014.1\|4748814_4750188_+	two-component system sensor histidine kinase CpxA	W8CYF6	Bacillus_phage	7.2e-15	25.6
QAZ31015.1\|4750235_4750439_-	hypothetical protein	NA	NA	NA	NA
QAZ31016.1\|4750559_4750955_-	nuclear transport factor 2 family protein	NA	NA	NA	NA
QAZ31017.1\|4750966_4751719_-	MOSC domain-containing protein	NA	NA	NA	NA
QAZ31018.1\|4751725_4752346_-	superoxide dismutase [Mn]	Q56AR7	Bacillus_thuringiensis_phage	2.4e-63	58.9

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP025243

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection