CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP030138	Staphylococcus aureus strain M48 chromosome, complete genome	11 crisprs	cas3,DEDDh,DinG,csa3,WYL	13	4	16	1

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP030138_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030138_1

443148-443248

Orphan

Consensus_repeat	Method
TTATGAATTGAGTATTAAATTTG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030138_1

>merge|CP030138|1|443148-443248|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTGAAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTATATATGAATTGAGTATTAAATTTG

>CP030138|1|1|443148-443248|CRISPRCasFinder
TTATGAATTGAGTATTAAATTTG	AAAGTAAATTACAGTTCTATAGGTTTATAAAAATCAGTTTTTAAATCAAAGCTAT
ATATGAATTGAGTATTAAATTTG

Protein	Signature genes	Signature genes Name	Protein_function
CP030138.1\|QAZ58381.1\|446641_447910_+\|purine-permease	unknown	unknown	gnl\|CDD\|274468
CP030138.1\|QAZ58379.1\|445143_445551_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378584
CP030138.1\|QAZ58374.1\|440899_442288_-\|L-cystine-transporter	unknown	unknown	gnl\|CDD\|224736
CP030138.1\|QAZ58380.1\|446063_446642_+\|xanthine-phosphoribosyltransferase	unknown	unknown	gnl\|CDD\|181705
CP030138.1\|QAZ58384.1\|451047_452241_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP030138.1\|QAZ58378.1\|444338_445001_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58371.1\|437463_438987_-\|alkyl-hydroperoxide-reductase-subunit-F	unknown	unknown	gnl\|CDD\|237942
CP030138.1\|QAZ58383.1\|449438_450980_+\|GMP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|234614
CP030138.1\|QAZ58376.1\|442681_442939_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58377.1\|443264_444221_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|235334
CP030138.1\|QAZ58370.1\|437091_437385_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58367.1\|435107_435689_+\|histidine-phosphatase-family-protein	unknown	unknown	gnl\|CDD\|223483
CP030138.1\|QAZ58369.1\|436392_437019_-\|NDxxF-motif-lipoprotein	unknown	unknown	gnl\|CDD\|380196
CP030138.1\|QAZ58386.1\|452965_453196_-\|helix-turn-helix-domain-containing-protein	unknown	unknown	gnl\|CDD\|378900
CP030138.1\|QAZ58375.1\|442372_442474_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58368.1\|435754_436138_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58382.1\|447947_449414_+\|IMP-dehydrogenase	unknown	unknown	gnl\|CDD\|235507
CP030138.1\|QAZ58373.1\|440063_440819_+\|NADPH-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|380322
CP030138.1\|QAZ58372.1\|439002_439572_-\|peroxiredoxin	unknown	unknown	gnl\|CDD\|211789
CP030138.1\|QAZ58385.1\|452267_452468_-\|DUF3173-domain-containing-protein	unknown	unknown	gnl\|CDD\|371495

Protein	Function_ID	Function_description	E-value
CP030138.1\|QAZ58383.1\|449438_450980_+\|GMP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|234614	PRK00074, guaA, GMP synthase; Reviewed.	0
CP030138.1\|QAZ58379.1\|445143_445551_-\|hypothetical-protein	gnl\|CDD\|378584	pfam11181, YflT, Heat induced stress protein YflT. YflT is a heat induced protein.	2.0219e-12
CP030138.1\|QAZ58374.1\|440899_442288_-\|L-cystine-transporter	gnl\|CDD\|224736	COG1823, COG1823, Predicted Na+/dicarboxylate symporter [General function prediction only].	0
CP030138.1\|QAZ58380.1\|446063_446642_+\|xanthine-phosphoribosyltransferase	gnl\|CDD\|181705	PRK09219, PRK09219, xanthine phosphoribosyltransferase; Validated.	9.01486e-119
CP030138.1\|QAZ58384.1\|451047_452241_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.36769e-47
CP030138.1\|QAZ58371.1\|437463_438987_-\|alkyl-hydroperoxide-reductase-subunit-F	gnl\|CDD\|237942	PRK15317, PRK15317, alkyl hydroperoxide reductase subunit F; Provisional.	0
CP030138.1\|QAZ58381.1\|446641_447910_+\|purine-permease	gnl\|CDD\|274468	TIGR03173, pbuX, xanthine permease. All the seed members of this model are observed adjacent to genes for either xanthine phosphoribosyltransferase (for the conversion of xanthine to guanine, GenProp0696) or genes for the conversion of xanthine to urate and its concomitant catabolism (GenProp0640, GenProp0688, GenProp0686 and GenProp0687). A number of sequences scoring higher than trusted to this model are found in different genomic contexts, and the possibility exist that these transport related compounds in addition to or instead of xanthine itself. The outgroup to this family are sequences which are characterized as uracil permeases or are adjacent to established uracil phosphoribosyltransferases.	3.16192e-170
CP030138.1\|QAZ58377.1\|443264_444221_-\|hypothetical-protein	gnl\|CDD\|235334	PRK05035, PRK05035, electron transport complex protein RnfC; Provisional.	0.000748442
CP030138.1\|QAZ58367.1\|435107_435689_+\|histidine-phosphatase-family-protein	gnl\|CDD\|223483	COG0406, phoE, Broad specificity phosphatase PhoE and related phosphatases [General function prediction only].	2.78414e-49
CP030138.1\|QAZ58369.1\|436392_437019_-\|NDxxF-motif-lipoprotein	gnl\|CDD\|380196	NF033193, lipo_NDxxF, NDxxF motif lipoprotein. Members of this family are lipoproteins, about 200 amino acids long in precursor form, found in Staphylococcus aureus, Bacillus cereus, and various other Firmicutes. The protein family is named for one of its several highly conserved motifs.	1.67126e-71
CP030138.1\|QAZ58386.1\|452965_453196_-\|helix-turn-helix-domain-containing-protein	gnl\|CDD\|378900	pfam12645, HTH_16, Helix-turn-helix domain. This domain appears to be a helix-turn-helix domain suggesting that this might be a transcriptional regulatory protein. Some members of this family are annotated as conjugative transposon domains.	2.04673e-25
CP030138.1\|QAZ58382.1\|447947_449414_+\|IMP-dehydrogenase	gnl\|CDD\|235507	PRK05567, PRK05567, inosine 5'-monophosphate dehydrogenase; Reviewed.	0
CP030138.1\|QAZ58373.1\|440063_440819_+\|NADPH-dependent-oxidoreductase	gnl\|CDD\|380322	cd02146, NfsA-like, nitroreductase similar to Escherichia coli NfsA. This family contains NADPH-dependent flavin reductase and oxygen-insensitive nitroreductase. These enzymes are homodimeric flavoproteins that contain one FMN per monomer as a cofactor. Flavin reductase catalyzes the reduction of flavin by using NADPH as an electron donor. Oxygen-insensitive nitroreductase, such as NfsA protein in Escherichia coli, catalyzes reduction of nitrocompounds using NADPH as electron donor.	5.03864e-88
CP030138.1\|QAZ58372.1\|439002_439572_-\|peroxiredoxin	gnl\|CDD\|211789	TIGR03137, AhpC, peroxiredoxin. This peroxiredoxin (AhpC, alkylhydroperoxide reductase subunit C) is one subunit of a two-subunit complex with subunit F(TIGR03140). Usually these are found as an apparent operon. The gene has been characterized in Bacteroides fragilis, where it is important in oxidative stress defense. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue. [Cellular processes, Detoxification, Cellular processes, Adaptations to atypical conditions].	1.50623e-124
CP030138.1\|QAZ58385.1\|452267_452468_-\|DUF3173-domain-containing-protein	gnl\|CDD\|371495	pfam11372, DUF3173, Domain of unknown function (DUF3173). This family of proteins with unknown function appears to be restricted to Firmicutes. These proteins appear to be distantly related to HHH domains and are therefore likely to be DNA-binding. Genomic environment-visualisation confirms the likely function as being DNA-binding, as this short protein lies very closely between an integrase and a replication protein (http://www.microbesonline.org/).	2.02242e-22

>CP030138.1|QAZ58376.1|442681_442939_-|hypothetical-protein
MLVTDESHKCTLIFTFTTNAFLLKQKYLFTVAFELPPAHTNTQKMLILIRQNFLQRVCSKRLFKVDHLLSFHSINMRLAIFIKPP
>CP030138.1|QAZ58375.1|442372_442474_+|hypothetical-protein
MQLNVNMMKFDRWHKGICKQIVLNSVVIGGKGK
>CP030138.1|QAZ58374.1|440899_442288_-|L-cystine-transporter
MNAFLTLINIIVLVIFIVILHMMARKHISFAKRVFTALGIGIVFGVLLHLIYGTHSNVITSTSDWFNIVGQGYVALLQMIVMPLIFISIVAAFTKIQIGEKFAKIGSLIFIFLIGTVTIAAIVGVVYALVFGLDASTINLGNAEQARGSEIAKQAKDLTAHTLPQQILELLPKNPFLDFTGQRATSTIAVVIFASFIGFAYLRVARKQPDHGELLKRAIDAIYSLVMAIVTFVLRLTPYGVLAIMANTLSTSDFGAIWTLGKFLIASYAALITMYIIHLIILSLLGISPIRYVKKTLEVLIFAFTSRSSAGALPLNVQTQTRRLGVPEGIANFAATFGLSIGQNGCAGIYPAMLAIMVAPVANVEIDLQFIVTLIAVVIISSFGVAGVGGGATFASILVLSTLNLPVALAGVLISVEPLIDMGRTALNVNDSMLAGTGTAKLTKHWDKDTFDSNDNAALTSH
>CP030138.1|QAZ58373.1|440063_440819_+|NADPH-dependent-oxidoreductase
MSEHVYNLVKKHHSVRKFKNKPLSEDVVKKLVEAGQSASTSSFLQAYSIIGIDDEKIKENLREVSGQPYVVENGYLFVFVIDYYRHHLVDQHAETDMENAYGSTEGLLVGAIDAALVAENIAVTAEDMGYGIVFLGSLRNDVERVREILDLPDYVFPVFGMAVGEPADDENGAAKPRLPFDHVFHHNKYHADKETQYAQMADYDQTISEYYDQRTNGNRKETWSQQIEMFLGNKARLDMLEQLQKSGLIQR
>CP030138.1|QAZ58372.1|439002_439572_-|peroxiredoxin
MSLINKEILPFTAQAFDPKKDQFKEVTQEDLKGSWSVVCFYPADFSFVCPTELEDLQNQYEELQKLGVNVFSVSTDTHFVHKAWHDHSDAISKITYTMIGDPSQTITRNFDVLDEATGLAQRGTFIIDPDGVVQASEINADGIGRDASTLAHKIKAAQYVRKNPGEVCPAKWEEGAKTLQPGLDLVGKI
>CP030138.1|QAZ58371.1|437463_438987_-|alkyl-hydroperoxide-reductase-subunit-F
MLNADLKQQLKQLLELMEGNVEFVASLGSDDKSKELKDLLTEITDMSPRLSLSEKSLKRTPSFSVNRPGEETGVTFAGIPLGHEFNSLVLAILQVSGRAPKEKQSIIDQIKKLEGSFHFETFISLTCQKCPDVVQALNLMSVINPNITHSMIDGAVFREESENIMAVPAVFLNGEEFGNGRMTIQDILSKLGSTADASEFENKEPYDVLIVGGGPASGSAAIYTARKGLRTGIVADRIGGQVNDTAGIENFITVKETTGSEFSSNLAAHIDQYDIDAMTGIRATDIEKTDEAIKVTLENGAVLESKTVIIATGAGWRKLNIPGEEQLINKGVAFCPHCDGPLFENKDVAVIGGGNSGVEAAIDLAGIVNHVTLFEFASELKADNVLQDRLRSLSNVDIKTNAKTTEVVGEDHVTGIRYEDMNTGEEHLLNLDGIFVQIGLLPNTSWLNDAVELNERGEIVIDRNNNTNVPGIFAAGDVTDQKNKQIIISMGAGANAALNAFDYIIRN
>CP030138.1|QAZ58370.1|437091_437385_-|hypothetical-protein
MINLIYTTRCAIMLKVCTSRKQINMKNDIEKEKYVNEIIMLLRTIPTSKLVQPIMQLFIDKAILNNVQNDALLIEKATHARNHLRLWSLQGHRDIPN
>CP030138.1|QAZ58369.1|436392_437019_-|NDxxF-motif-lipoprotein
MKKRLLLSTFLASTLILTGCASDQSDNEDHHTSTGIHAPKSAKKLETKDIFNSDKKNSDISDAEMKQAIEKYLSVNSDILDNKYIMQHKLDKQIDSQTKVTEKQAETLSHLSNLAVKNDLHFKKFVTENNIPKEYKKPVELMMNYFKALNSTIANVDEDIEKLSYQPQNKINVVDVPTKYAGDVNKKQQDKIKDFLKSKGIKSDVIDK
>CP030138.1|QAZ58368.1|435754_436138_-|hypothetical-protein
MKVRITFIILAILSTIVCLFLAAMHPTGPNTVTFEQPYLFTLNIIIMVLVALPSLVLAIYDYMSFRISSAILQFLGAISWFFLSLILSLTQFTPFTLASFITSIILFTSTIITLAIGGKSVEKNDSP
>CP030138.1|QAZ58367.1|435107_435689_+|histidine-phosphatase-family-protein
MTIYLVRHGESKSNYDNKHFRSYFCGQLDVPLTDTGTKSADDLCDYFKEKQIKHVYVSDLLRTQQTFEHIFPYDIASTTTPLLRERSLGVFEGEYKDEISANPKYEKYFNDPNFKDFRHSFSQKAPEGESYEDVYQRVEHFMNHVVNEDTQKDDIVIVAHQVVIRCLMVYFNKVSRAEAVDLKVENCKPYIIE
>CP030138.1|QAZ58377.1|443264_444221_-|hypothetical-protein
MLTKEFAQRVELSEKQVRKIVQHLEERGYQLSKTEYRGREATDFKEEDIELFKDIADKVKQTNSYDLAFDELEKEKDFLQVIVKNDDKNLPTNQNVAQLVEDLRLEIQKMREERHLLGQMMNQVHQQQQELKELQNQLTSKIDSNSESLKAIQTSQEAIQEAQASQAKALAESTNKVEKNAVTEDKADSKDSKVAGVNTSTDAKTDTKAENAGDGTATKVDKEDQISATEAIEKASVEQSKNDNAAETSNKEATVDAEAQHDAEQQVAEAHAEASKQATSNDSLEAKAENDSTASQSEMSEPKPQEEKKGFFARLFNL
>CP030138.1|QAZ58378.1|444338_445001_-|hypothetical-protein
MEFKTIQSVKDPHYNEALKLYDTKLNLSLTEDKRIIKRSLENNKTENDYVFIVGLENDVVVSLATAHYEATTNSAFLIYLFAKDLPNHDELMTQTLHQIEHELNLLSNLVHSRSINFLMMEVPKEPADLTQDNGLIIEHRRQFLYEHQFERQTEIDYIHPTNDGHTKKVDLFLKKNIKLTKDIYGTSVKSNYILKYVFANGIAREIIYALLEETDLRKPF
>CP030138.1|QAZ58379.1|445143_445551_-|hypothetical-protein
MADITVVNDTGELYNVINQKKSEGYLESELTIISKSKLHLNDLHDSEISLISTSGTFSDRMTKLLTGEDGEHAVLSRYNLAPDELEKYKQLILDDKMLVVAVRDKSSHQEVHENNSAYEEIDITHFAEASKGPKA
>CP030138.1|QAZ58380.1|446063_446642_+|xanthine-phosphoribosyltransferase
MELLGQKVKEDGVVIDEKILKVDGFLNHQIDAKLMNEVGRTFYEQFKDKGITKILTIEASGIAPAIMAALHFDVPCLFAKKAKPSTLTDGYYETSIHSFTKNKTSTVIVSKEFLSEEDTVLIIDDFLANGDASLGLYDIAQQANAKTAGIGIVVEKSFQNGHQRLEEAGLTVSSLCKVASLEGNKVTLVGEE
>CP030138.1|QAZ58381.1|446641_447910_+|purine-permease
MKNLILSVQHLLAMYAGAILVPIIVGTSLKFTPEQIAYLVTVDIFMCGVATFLQANKVTGTGLPIVLGCTFTAVAPMILIGQTKGIDVLYGSLFLSGILVIIIAPFFSHLVKFFPPVVTGSVVTIIGINLMPVAMNYLAGGQGAKDYGDVKNILLGLMTLIIILLLQRFTTGFIKSIAILIGLVLGTIGAGLLGMVDINQVNHAGWLGIPVPFRFSGFSFDVTSTLVFFIVAIVSLIESTGVYHALSEITGKKLERKDFRKGYTAEGLAIVLGSIFNSFPYTAYSQNVGLVSLSGAKKNNVIYGMVVLLLICGCIPKLGALANIIPLPVLGGAMIAMFGMVMAYGVSILGHIDFKNQNNLLIIAVSVGLGTGISAVPQAFKGLGEQFAWLTQNGIVLGAISAIILNFFFNGIKYKQTEENVQ
>CP030138.1|QAZ58382.1|447947_449414_+|IMP-dehydrogenase
MWESKFAKESLTFDDVLLIPAQSDILPKDVDLSVQLSDKVKLNIPVISAGMDTVTESKMAIAMARQGGLGVIHKNMGVEEQADEVQKVKRSENGVISNPFFLTPEESVYEAEALMGKYRISGVPIVDNKEDRNLVGILTNRDLRFIEDFSIKIVDVMTQENLITAPVNTTLEEAEKILQKHKIEKLPLVKDGRLEGLITIKDIEKVIEFPNAAKDEHGRLLVAAAIGISKDTDIRAQKLVEAGVDVLVIDTAHGHSKGVIDQVKHIKKTYPEITLVAGNVATAEATKDLFEAGADIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATEARKHGKAIIADGGIKFSGDIIKALAAGGHAVMLGSLLAGTEESPGATEIFQGRQYKVYRGMGSLGAMEKGSNDRYFQEDKAPKKFVPEGIEGRTAYKGALQDTIYQLMGGVRAGMGYTGSHDLRELREEAQFTRMGPAGLAESHPHNIQITKESPNYSF
>CP030138.1|QAZ58383.1|449438_450980_+|GMP-synthase-(glutamine-hydrolyzing)
MEMAKEQELILVLDFGSQYNQLITRRIREMGVYSELHDHEISIEEIKKMNPKGIILSGGPNSVYEEGSFTIDPEIYNLGIPVLGICYGMQLTTKLLGGKVERANEREYGKAIINAKSDELFAGLPAEQTVWMSHSDKVIEIPEGFEVIADSPSTDYAAIEDKKRRIYGVQFHPEVRHTEYGNDLLNNFVRRVCDCRGQWTMENFIEIEIEKIRQRVGDRRVLCAMSGGVDSSVVAVLLHKAIGDQLTCIFVDHGLLRKGEGDMVMEQFGEGFNMNIIRVNAKDRFMNKLKGVSDPEQKRKIIGNEFVYVFDDEASKLKGVDFLAQGTLYTDVIESGTKTAQTIKSHHNVGGLPEDMEFELIEPINTLFKDEVRKLGIELGIPEHLVWRQPFPGPGLGIRVLGEITEDKLEIVRESDAILRQVIREEGLEREIWQYFTVLPNIQSVGVMGDYRTYDHTVGIRAVTSIDGMTSDFARIDWEVLQKISSRIVNEVDHVNRVVYDITSKPPSTIEWE
>CP030138.1|QAZ58384.1|451047_452241_-|site-specific-integrase
MVKDPIKKAKNGTYYFRANLGYDSKGKKIQKYRSGFTTKKEAREEYSKLLLMKPEELSENKDKMTFKHYIFEIFLPWYKTQVKLRTYENRLPTIKKHFSYFDKMAVSDIEPIDVQNWQLKLSKKCKSSYVRAVQGLFSVAMDRAIVLGITTTNPSKIIGNVKKQKSKIEFWTKEEFEKVISLIYKEDYYQHFLFISLWFLFMTGMRIGEATAIQWEDIDFDSGVLTINKTLYYKNQSNYRFVEPKTKASVRHIVLDKCTLTYLSEWKEVQQNLIQTDFVMSYNGIPTQKHTLSYAIERYAKLAGIHRIRIHGLRHSHASLLISMGENPLIIKDRLGHEDIETTLGTYGHLYPNSNFEVANKLNGAISFKEAKQNYDTSPKNQFTVDYLRNKEMKKVQ
>CP030138.1|QAZ58385.1|452267_452468_-|DUF3173-domain-containing-protein
MITVTKKDLVELGYGTSFSADIIKKAKELMITKGHIYYQSRKLDRVPREAVEEILGIRFSNENRSE
>CP030138.1|QAZ58386.1|452965_453196_-|helix-turn-helix-domain-containing-protein
MKTAYPRVPFPLIVKATDGDVEAINQIVKHYRGYTSKRSLRRMTDEYGNSHMVIDETLRGRMETKLISKILSFEIK

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Crispr_ID: CP030138_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030138_2

708594-708686

Orphan

Consensus_repeat	Method
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030138_2

>merge|CP030138|2|708594-708686|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTAAGGCACAACTGCATAAAAGCCTCTAATCGCTAAAGATGAAGAGGAACGCAGTTGGATGCTA

>CP030138|2|2|708594-708686|CRISPRCasFinder
CTAAAGGTGAAGAGGAACGCAGTTGGATGCTA	AGGCACAACTGCATAAAAGCCTCTAATCG
CTAAAGATGAAGAGGAACGCAGTTGGATGCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP030138.1\|QAZ58619.1\|711497_712298_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP030138.1\|QAZ58618.1\|710794_711514_+\|HAD-family-hydrolase	unknown	unknown	gnl\|CDD\|223943
CP030138.1\|QAZ58614.1\|705077_705185_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58610.1\|700428_700965_+\|flavodoxin-family-protein	unknown	unknown	gnl\|CDD\|223728
CP030138.1\|QAZ60922.1\|709789_710740_+\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|376439
CP030138.1\|QAZ58613.1\|703992_705003_+\|zinc-dependent-alcohol-dehydrogenase	unknown	unknown	gnl\|CDD\|181842
CP030138.1\|QAZ60921.1\|708814_709642_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238563
CP030138.1\|QAZ58621.1\|713101_713818_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58622.1\|713986_714775_+\|alpha/beta-hydrolase	unknown	unknown	gnl\|CDD\|223669
CP030138.1\|QAZ58616.1\|707296_707605_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58611.1\|701133_701610_+\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|366181
CP030138.1\|QAZ58617.1\|707740_708376_+\|endonuclease-III-domain-containing-protein	unknown	unknown	gnl\|CDD\|225140
CP030138.1\|QAZ58623.1\|715025_715400_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|130944
CP030138.1\|QAZ58625.1\|717471_717696_-\|DUF2922-domain-containing-protein	unknown	unknown	gnl\|CDD\|378571
CP030138.1\|QAZ60920.1\|705310_705694_+\|DUF1934-family-protein	unknown	unknown	gnl\|CDD\|226896
CP030138.1\|QAZ60919.1\|702972_703494_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378039
CP030138.1\|QAZ58620.1\|712433_712940_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58612.1\|701649_702945_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|224004
CP030138.1\|QAZ58615.1\|705690_707352_+\|arginine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234964
CP030138.1\|QAZ58624.1\|716347_717277_-\|EamA-like-transporter-family-protein	unknown	unknown	gnl\|CDD\|225778

Protein	Function_ID	Function_description	E-value
CP030138.1\|QAZ58619.1\|711497_712298_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.35732e-24
CP030138.1\|QAZ58625.1\|717471_717696_-\|DUF2922-domain-containing-protein	gnl\|CDD\|378571	pfam11148, DUF2922, Protein of unknown function (DUF2922). This bacterial family of proteins has no known function.	1.74707e-13
CP030138.1\|QAZ58610.1\|700428_700965_+\|flavodoxin-family-protein	gnl\|CDD\|223728	COG0655, WrbA, Multimeric flavodoxin WrbA [General function prediction only].	3.16348e-26
CP030138.1\|QAZ60922.1\|709789_710740_+\|iron-ABC-transporter-permease	gnl\|CDD\|376439	pfam01032, FecCD, FecCD transport family. This is a sub-family of bacterial binding protein-dependent transport systems family. This Pfam entry contains the inner components of this multicomponent transport system.	5.19191e-48
CP030138.1\|QAZ58613.1\|703992_705003_+\|zinc-dependent-alcohol-dehydrogenase	gnl\|CDD\|181842	PRK09422, PRK09422, ethanol-active dehydrogenase/acetaldehyde-active reductase; Provisional.	0
CP030138.1\|QAZ60921.1\|708814_709642_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238563	cd01143, YvrC, Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.	1.32108e-72
CP030138.1\|QAZ58622.1\|713986_714775_+\|alpha/beta-hydrolase	gnl\|CDD\|223669	COG0596, MhpC, Predicted hydrolases or acyltransferases (alpha/beta hydrolase superfamily) [General function prediction only].	1.55978e-34
CP030138.1\|QAZ58611.1\|701133_701610_+\|GNAT-family-N-acetyltransferase	gnl\|CDD\|366181	pfam00583, Acetyltransf_1, Acetyltransferase (GNAT) family. This family contains proteins with N-acetyltransferase functions such as Elp3-related proteins.	1.13315e-11
CP030138.1\|QAZ58612.1\|701649_702945_+\|HD-domain-containing-protein	gnl\|CDD\|224004	COG1078, COG1078, HD superfamily phosphohydrolases [General function prediction only].	3.76825e-150
CP030138.1\|QAZ58623.1\|715025_715400_-\|transcriptional-regulator	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	1.77309e-26
CP030138.1\|QAZ58617.1\|707740_708376_+\|endonuclease-III-domain-containing-protein	gnl\|CDD\|225140	COG2231, COG2231, Uncharacterized protein related to Endonuclease III [DNA replication, recombination, and repair].	3.98158e-90
CP030138.1\|QAZ60920.1\|705310_705694_+\|DUF1934-family-protein	gnl\|CDD\|226896	COG4506, COG4506, Uncharacterized protein conserved in bacteria [Function unknown].	9.50091e-54
CP030138.1\|QAZ60919.1\|702972_703494_+\|hypothetical-protein	gnl\|CDD\|378039	pfam08741, YwhD, YwhD family. This family of proteins are currently uncharacterized. They are around 170 amino acids in length.	8.7406e-98
CP030138.1\|QAZ58618.1\|710794_711514_+\|HAD-family-hydrolase	gnl\|CDD\|223943	COG1011, COG1011, Predicted hydrolase (HAD superfamily) [General function prediction only].	3.6864e-38
CP030138.1\|QAZ58615.1\|705690_707352_+\|arginine--tRNA-ligase	gnl\|CDD\|234964	PRK01611, argS, arginyl-tRNA synthetase; Reviewed.	0
CP030138.1\|QAZ58624.1\|716347_717277_-\|EamA-like-transporter-family-protein	gnl\|CDD\|225778	COG3238, COG3238, Uncharacterized protein conserved in bacteria [Function unknown].	7.93315e-37

>CP030138.1|QAZ58617.1|707740_708376_+|endonuclease-III-domain-containing-protein
MLGTDELYKVLYEHLGPQFWWPADNDIEMMLGAILVQNTRWRNAEIALNQIKEHTHFNPNHILELPIETLQSLIHSSGFYKSKSLTIKTLLTWLARHHFNYQEINERYKGGLRKELLSLKGIGSETADVLLVYIFGRIEFIPDSYTRKIYDKLGYENTKNYDQLKKVVTLPNHFTNQDANEFHALLDVFGKHYFRDKDIKNYDFLEPYFKK
>CP030138.1|QAZ58616.1|707296_707605_-|hypothetical-protein
MTRIEKSLLQANFRSVNYCHYNFVEHRTLIYVSGSLMQLCRASNCVPLNLIHILSIPQYVTYLKKTLQHKVSFEKLYVGVYINVLTLIQVRLHRPLPMHFSM
>CP030138.1|QAZ58615.1|705690_707352_+|arginine--tRNA-ligase
MNIIDQVKQTLVEEIAASINKAGLADEIPDIKIEVPKDTKNGDYATNIAMVLTKIAKRNPREIAQAIVDNLDTEKAHVKQIDIAGPGFINFYLDNQYLTAIIPEAIEKGDQFGHVNESKGQNVLLEYVSANPTGDLHIGHARNAAVGDALANILTAAGYNVTREYYINDAGNQITNLARSIETRFFEALGDNSYSMPEDGYNGKDIIEIGKDLAEKHPEIKDYSEEARLKEFRKLGVEYEMAKLKNDLAEFNTHFDNWFSETSLYEKGEILEVLAKMKELGYTYEADGATWLRTTDFKDDKDRVLIKNDGTYTYFLPDIAYHFDKVKRGNDILIDLFGADHHGYINRLKASLETFGVDSNRLEIQIMQMVRLMENGKEVKMSKRTGNAITLREIMDEVGVDAARYFLTMRSPDSHFDFDMELAKEQSQDNPVYYAQYAHARICSILKQAKEQGIEVTAANDFTTITNEKAIELLKKVADFEPTIESAAEHRSAHRITNYIQDLASHFHKFYNAEKVLTDDIEKTKAHVAMIEAVRITLKNALAMVGVSAPESM
>CP030138.1|QAZ60920.1|705310_705694_+|DUF1934-family-protein
MLKQHNEKEKFEFTTEGTWQQRQSNFIRYVEQIEDATVNVTIKVDDDSVKLIRKGDINMNLHFVEGQTTTTFYDISAGRIPLEVKTLRILHFVSGDGGKLKIHYELYQDNEKMGSYQYEINYKEIGE
>CP030138.1|QAZ58614.1|705077_705185_+|hypothetical-protein
MKDSENLVFFGFEVLFVFYKMAYIYEALIKYGIVN
>CP030138.1|QAZ58613.1|703992_705003_+|zinc-dependent-alcohol-dehydrogenase
MRAAVVTKDHKVSIEDKKLRALKPGEALVQTEYCGVCHTDLHVKNADFGDVTGVTLGHEGIGKVIEVAEDVESLKIGDRVSIAWMFESCGRCEYCTTGRETLCRSVKNAGYTVDGAMAEQVIVTADYAVKVPEKLDPAAASSITCAGVTTYKAVKVSNVKPGQWLGVFGIGGLGNLALQYAKNVMGAKIVAFDINDDKLAFAKELGADAIINSKDVDPVAEVMKLTDNKGLDATVVTSVAKTPFNQAVDVVKAGARVVAVGLPVDKMNLDIPRLVLDGIEVVGSLVGTRQDLREAFEFAAENKVTPKVQLRKLEEINDIFEEMENGTITGRMVIKF
>CP030138.1|QAZ60919.1|702972_703494_+|hypothetical-protein
MEVISLSEKKGFNFNIIKNDPLDGHKGTNIGSISLDNIAPVFIDVANKEAFIDIGGMHARAKVEKGVKWITDKAAVEGDEAKEYWLCWVTTERNEQGPYYAGLTACYLLVNKAIRRGYKSMPEHVNMMDKSMKHHIIIDQIGDENKAILKDFLMNHDEGMWKHSSDALHQAFN
>CP030138.1|QAZ58612.1|701649_702945_+|HD-domain-containing-protein
MTNAYVDLKLVEEKVFKDPIHRYIHVEDQLIWDLIKTKEFQRLRRIRQLGTLYLSFHTAEHSRFGHSLGVYEIVRRLIDESFIGHDAWDNKDRPLALCAALLHDLGHGPFSHSFEKIFNTDHEAYTQAIITGDTEVNAVLRKVAPEFPREVAEVINKTHHNKLVISMISSQIDADRMDYLQRDAYFTGVSYGAFDMERILRLMRPSKDEVLIKESGMHAVENFIMSRYQMYWQIYFHPVSRGGEVLLNNCLKRAKQLYNEGYEFKLHPHDFIPFFEETVTIEQYVELDEAVVTYYLEKWTKEDDAILSDLASRFINRDLFKYIPFDGSIITISELQELFEAGGINPDYYFVSEAFSDLPYDYDRPGSNRKPIHLLRQYGTIREISNQSLVIHSITGINRQDYKLYYPREMVAKIKDKTIREAIENLINELN
>CP030138.1|QAZ58611.1|701133_701610_+|GNAT-family-N-acetyltransferase
MFKVRQATEKDVVQIRDVATKAWFNTYLNIYAATTVNHLLEASYNEHHLKKRLQEQLFLVVEEGNDIVGFANFIYGEELYLSAHYVKPESQHTGYGTALLNEGLSRFEDKFEGVYLEVDNKNEEAVAYYKEQGFTILRSYEPEMYGEKLDLALMYKAF
>CP030138.1|QAZ58610.1|700428_700965_+|flavodoxin-family-protein
MITVLFGGSRPNGNTAQLTKFALQDLEYQWIDVTQHQFKPIRDVRHTAETITSYDDDYLPILDKILASDTIIFASPVYWYSISAPLKAFIEHWSETLQDKRYPNFKAQMAEKDFRVILVGGDCPKIKAKPAITQMKYSLDFLGATLNGYIIGTAEKPGDIMKDNYALARATEWNSILQ
>CP030138.1|QAZ60921.1|708814_709642_+|ABC-transporter-substrate-binding-protein
MKDNDKQGSNDNGSSKSPYHRIVSLMPSNTEILYELGLGKYIVGVSTVDDYPKDVKKGKKQFDALNLNKEELLKAKPDLILAHESQKATANKVLSSLEKQGIKVVYVKDAQSIDETYNTFKQIGKLTHHDKQAEQLVEETKDNIDKVIDSIPAHHKKSKVFIEVSSKPEIYTAGKHTFFNDMLEKLEAQNVYSDINGWNPVTKESIIKKNPDILISTEAKTRSDYMDIIKKRGGFNKINAVKNTRIEVVNGDEVSRPGPRIDEGLKELRDAIYRK
>CP030138.1|QAZ60922.1|709789_710740_+|iron-ABC-transporter-permease
MTFNKVLLSWIVILIITTSIYLFWQLGDINDVFNQSILINVRLPRLLEALLTGMILTVAGLIFQTVLNNALADSFTLGLASGATFGSGLALFLGLTTLWIPVFSITFSLITLITVLVITSVLSQGYPVRILILSGLMIGALFNSLLYFLILLKPRKLNTIANYLFGGFGDAEYSNVSIIAITFIIALFGIFIILNQLKLLQLGELKSQSLGLNVQLITYIALCIASMITAINVAYVGIIGFIGMVIPQLIRKWQWKQSLGRQLALNIVTGGQIMVMADFIGSHILSPVQIPASIIIALIGIPVLFYMLISQSKRLH
>CP030138.1|QAZ58618.1|710794_711514_+|HAD-family-hydrolase
MDLNQIKAVVFDLEGTLLDRVKSREKFIEEQYERFHDYLIHVQLADFKKAFIELDDDEDNDKPDLYKEIIKRFHVDRLTWKDLFNDFEMHFYRYVFPYYDTLYTLEKLSQKGFQIGVIANGKSKIKQFRLHSLGLMHVINYLSTSETVGFRKPHPKIFEDMIDQLGVLPEQIMYVGDDALNDVAPARAMGMVSVWYKQEDAEIEPLEEEVDFTITTVEELLTILPIKNDNKGENYGSIY
>CP030138.1|QAZ58619.1|711497_712298_+|alpha/beta-hydrolase
MDLFTRKDGTSIHYSTLGEGYPIVLIHTVLDNYSVFNKLAAELAKSFQVVLIDLRGHGYSDKPRHIEIKDFSDDIVELLKYLYIEEVAFVCHEMSGIIGADISVRYPEFTSSLTLVNPTSIEGELPEERLFRKYAHIIRNWDPEKQDKFLNKRKYYRPRKMNRFLKHVVDTNEISTKEEIQAVKEVFKNADISQTYRNVVVPTKIIAGEFGERTTRLEAKEVADLIQNADFEVYQESSAFPFVEEQERFVEDTAAFINKHHDEKHV
>CP030138.1|QAZ58620.1|712433_712940_+|hypothetical-protein
MKKLLTASIIACSVVMGVGLVNTSAEAASGNSIDTVKQLIKGDQSLENVKIGESIKDVLTKYKNPMYSYNEDGTEHYYEFHTKKGMLLVTTDGKKNNGKVTHISMMYNDANGPTYQAVKNYVGKAVTHTEYSKVAGNFGYIEKGKTTYQFASAPKDKNIKLYRIDLEK
>CP030138.1|QAZ58621.1|713101_713818_+|hypothetical-protein
MRINDKILLENIEDYFNHKGLSPHLIDDIKEKVITDIKNSEKKDQDYIEYKRKSPAQIILMIQRNLFALQMNPVIFFIINFILISYLYDKQYVQFQAITGMSLFYCLVIFPMTIVVYLRVSQKNYLRSNKIEMIMGTIIAIISLLLIILQAFNITWGVIPITNFGHQFFFFIGIILVIAGIFYKRLEFSGIGLLFCQKTVDAMIHNPQSAQIFSLIIWILLVVLVIYFTIRLSSRTRL
>CP030138.1|QAZ58622.1|713986_714775_+|alpha/beta-hydrolase
MNKVTINPQIQLTYQIEGKGDPIILLHGLDGNLAGFEDLQHQLASSYKVLTYDLRGHGKSSKSESYDLNDHVEDLKILMEKLNIHEAHILGHDLGGVVAKLFTDKYAYRVKSLTTIASKKDDLIHSFTQLLIQYQDDIAGFNKSEAYILLFSKLFRNQEKTMKWYQKQRIYSIKSEDDSAVAIRSLILHKDEPMYLKKRTCVPTLLINGEHDPLIKDKNHFKLEAHFLNVTKKIFEHSGHAPHIEEPEAFMNYYLKFLKSVS
>CP030138.1|QAZ58623.1|715025_715400_-|transcriptional-regulator
MAITKINDCFELLSMVTYADKLKSLIKKEFSISFEEFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDYFDKKRNEHDERTVLILVNAQQRKKIESLLSRVNKRITEANNEIEL
>CP030138.1|QAZ58624.1|716347_717277_-|EamA-like-transporter-family-protein
MLLFYIIGVLVGMLIPIQTSVNSRLSLYTKSPFYTSFISFSVGTICLIILNIIINPEVFTIHFYNNQSFNYTWVVGGLLGVSFLTGNLLLLPKLGATLTVIATVAGQIIMGVIIDTFGLFGATIHDFNLIKAIGVLLLIVGIVIMNQFNKNNLLLTDQKYLLFWLLLGFIFGFFPPIQTTINSALASHTHSPAFASLVSFTIGSIALLILTAIFNRSLKLKTSHLKFGKLKPIYFTGGILGMAFVTANIILMPHMGAALTTLIGMFGQILMGILIDHFGLFGSPKIAMTSRKTIGLLCILTGIILLRLF
>CP030138.1|QAZ58625.1|717471_717696_-|DUF2922-domain-containing-protein
MTKTLELSFKSSLDKPVKLQLPQLNNVVTEQVARDSMNALVDLNIIKSNSGTITKVHSAQIIDKTTTVLFEDKK

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Crispr_ID: CP030138_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030138_3

824339-824421

Orphan

Consensus_repeat	Method
CCAATTTCTACAGACAATGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030138_3

>merge|CP030138|3|824339-824421|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACGCCAATTTCTACAGACAATGCAAGTTGG

>CP030138|3|3|824339-824421|CRISPRCasFinder
CCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACATAGAGAAATTGGAACG
CCAATTTCTACAGACAATGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP030138.1\|QAZ58741.1\|830450_832556_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	unknown	unknown	gnl\|CDD\|236069
CP030138.1\|QAZ58734.1\|825877_825979_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58742.1\|832673_833645_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	unknown	unknown	gnl\|CDD\|275027
CP030138.1\|QAZ58723.1\|811233_811944_+\|allophanate-hydrolase	unknown	unknown	gnl\|CDD\|224960
CP030138.1\|QAZ58731.1\|823647_824190_+\|5'(3')-deoxyribonucleotidase	unknown	unknown	gnl\|CDD\|226895
CP030138.1\|QAZ58735.1\|826056_827562_-\|peptide-MFS-transporter	unknown	unknown	gnl\|CDD\|225646
CP030138.1\|QAZ58739.1\|829673_829940_+\|ribonucleoside-diphosphate-reductase	unknown	unknown	unknown
CP030138.1\|QAZ58726.1\|815616_817500_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|223562
CP030138.1\|QAZ58736.1\|827627_827873_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58724.1\|811927_812932_+\|allophanate-hydrolase-subunit-2-family-protein	unknown	unknown	gnl\|CDD\|224895
CP030138.1\|QAZ58725.1\|813405_815346_+\|lipoteichoic-acid-synthase	unknown	unknown	gnl\|CDD\|224287
CP030138.1\|QAZ58730.1\|822238_823297_+\|histidinol-phosphate-transaminase	unknown	unknown	gnl\|CDD\|235106
CP030138.1\|QAZ58729.1\|820484_821999_+\|ABC-transporter-permease-subunit	unknown	unknown	gnl\|CDD\|270328
CP030138.1\|QAZ58722.1\|810939_811146_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58728.1\|819514_820492_+\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224050
CP030138.1\|QAZ58738.1\|828422_829289_-\|DMT-family-transporter	unknown	unknown	gnl\|CDD\|223769
CP030138.1\|QAZ58737.1\|827902_828403_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	unknown	unknown	gnl\|CDD\|223851
CP030138.1\|QAZ58727.1\|817511_819293_+\|DNA-helicase-RecQ	unknown	unknown	gnl\|CDD\|273594
CP030138.1\|QAZ58740.1\|830089_830488_+\|protein-NrdI	unknown	unknown	gnl\|CDD\|224694
CP030138.1\|QAZ58733.1\|824869_825787_-\|lipid-kinase	unknown	unknown	gnl\|CDD\|224513

Protein	Function_ID	Function_description	E-value
CP030138.1\|QAZ58741.1\|830450_832556_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha	gnl\|CDD\|236069	PRK07632, PRK07632, ribonucleotide-diphosphate reductase subunit alpha; Validated.	0
CP030138.1\|QAZ58742.1\|832673_833645_+\|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta	gnl\|CDD\|275027	TIGR04171, ribonucleotide-diphosphate_reductase_subunit_beta, ribonucleoside-diphosphate reductase, class 1b, beta subunit. Members of this family are NrdF, the beta subunit of class 1b ribonucleotide reductase. This form uses a dimanganese moiety associated with a tyrosine radical to reduce the cellular requirement for iron. [Purines, pyrimidines, nucleosides, and nucleotides, 2'-Deoxyribonucleotide metabolism].	2.30551e-164
CP030138.1\|QAZ58723.1\|811233_811944_+\|allophanate-hydrolase	gnl\|CDD\|224960	COG2049, DUR1, Allophanate hydrolase subunit 1 [Amino acid transport and metabolism].	1.29969e-94
CP030138.1\|QAZ58731.1\|823647_824190_+\|5'(3')-deoxyribonucleotidase	gnl\|CDD\|226895	COG4502, COG4502, 5'(3')-deoxyribonucleotidase [Nucleotide transport and metabolism].	1.15481e-107
CP030138.1\|QAZ58735.1\|826056_827562_-\|peptide-MFS-transporter	gnl\|CDD\|225646	COG3104, PTR2, Dipeptide/tripeptide permease [Amino acid transport and metabolism].	1.22605e-172
CP030138.1\|QAZ58726.1\|815616_817500_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|223562	COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only].	0
CP030138.1\|QAZ58740.1\|830089_830488_+\|protein-NrdI	gnl\|CDD\|224694	COG1780, NrdI, Protein involved in ribonucleotide reduction [Nucleotide transport and metabolism].	5.52807e-56
CP030138.1\|QAZ58724.1\|811927_812932_+\|allophanate-hydrolase-subunit-2-family-protein	gnl\|CDD\|224895	COG1984, DUR1, Allophanate hydrolase subunit 2 [Amino acid transport and metabolism].	1.25641e-144
CP030138.1\|QAZ58725.1\|813405_815346_+\|lipoteichoic-acid-synthase	gnl\|CDD\|224287	COG1368, MdoB, Phosphoglycerol transferase and related proteins, alkaline phosphatase superfamily [Cell envelope biogenesis, outer membrane].	0
CP030138.1\|QAZ58730.1\|822238_823297_+\|histidinol-phosphate-transaminase	gnl\|CDD\|235106	PRK03158, PRK03158, histidinol-phosphate aminotransferase; Provisional.	0
CP030138.1\|QAZ58729.1\|820484_821999_+\|ABC-transporter-permease-subunit	gnl\|CDD\|270328	cd13610, PBP2_ChoS, Substrate-binding domain ChoS of an osmoregulated ABC-type transporter and related proteins; type 2 periplasmic-binding protein fold. Osmoprotectant binding lipoprotein ChoS of Lactococcus lactis is predicted to be involved in uptake of compatible solutes such as choline and glycine betaine, but the relative substrate preference is not known. To counteract the efflux of water, microorganisms accumulate the compatible solutes for a sustained adjustment to high osmolarity surroundings. ChoS belongs to the type 2 periplasmic binding fold protein superfamily (PBP2). The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap.	3.03165e-152
CP030138.1\|QAZ58728.1\|819514_820492_+\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224050	COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism].	4.80291e-155
CP030138.1\|QAZ58738.1\|828422_829289_-\|DMT-family-transporter	gnl\|CDD\|223769	COG0697, RhaT, Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only].	3.8323e-10
CP030138.1\|QAZ58737.1\|827902_828403_-\|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF	gnl\|CDD\|223851	COG0780, COG0780, Enzyme related to GTP cyclohydrolase I [General function prediction only].	7.91282e-79
CP030138.1\|QAZ58727.1\|817511_819293_+\|DNA-helicase-RecQ	gnl\|CDD\|273594	TIGR01389, recQ, ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ. [DNA metabolism, DNA replication, recombination, and repair].	0
CP030138.1\|QAZ58733.1\|824869_825787_-\|lipid-kinase	gnl\|CDD\|224513	COG1597, LCB5, Sphingosine kinase and enzymes related to eukaryotic diacylglycerol kinase [Lipid metabolism / General function prediction only].	3.10512e-78

>CP030138.1|QAZ58731.1|823647_824190_+|5'(3')-deoxyribonucleotidase
MTRKSIAIDMDEVLADTLGEIIDAVNFRADLGIKMEALNGQKLKHVIPEHDGLITEVLREPGFFRHLKVMPYAQEVVKKLTEHYDVYIATAAMDVPTSFSDKYEWLLEFFPFLDPQHFVFCGRKNIVKADYLIDDNPRQLEIFTGTPIMFTAVHNINDDRFERVNSWKDVEQYFLDNIEK
>CP030138.1|QAZ58730.1|822238_823297_+|histidinol-phosphate-transaminase
MKEQLNQLSAYQPGLSPRALKEKYGIEGDLYKLASNENLYGPSPKVKEAISAHLDELYYYPETGSPTLKAAISKHLNVDQSRILFGAGLDEVILMISRAVLTPGDTIVTSEATFGQYYHNAIVESANVIQVPLKDGGFDLEGILKEVNEDTSLVWLCNPNNPTGTYFNHESLDSFLSQVPPHVPVIIDEAYFEFVTAEDYPDTLALQQKYDNAFLLRTFSKAYGLAGLRVGYVVASEHAIEKWNIIRPPFNVTRISEYAAVAALEDQQYLKEVTHKNSVERERFYQLPQSEYFLPSQTNFIFVKTKRVNELYEALLNVGCITRPFPTGVRITIGFKEQNDKMLEVLSNFKYE
>CP030138.1|QAZ58729.1|820484_821999_+|ABC-transporter-permease-subunit
MTNFFDILSERKGQLFSTMIEHIQISFIALLIATAIAVPLGILLTKTKTISEIVMNIAAILQTIPSLALLGLMIPLFGIGRVPAIIALVVYALLPILRNTYTGIKEVDPSLIEAAKGIGMKPFRRLTKVELPIAMPVIMAGVRTAMVLIIGTATLAALIGAGGLGDLILLGIDRNNASLILLGAIPAALLAIIFDLILRFMAKLSYKKLLMTLGVIVMIIILAIAIPMFAQKGDKITLAGKLGSEPSIITNMYKILIEEETKNTVEVKDGMGKTAFLFNALKSDDIDGYLEFTGTVLGELTKEPLKSKEEKKVYEQAKQSLEKKYQMTMLKPMKYNNTYALAVKRDFAKQHNIRTIGDLNKVKDQLKPGFTLEFNDRPDGYKAVQKAYNLNLDNIRTMEPKLRYQAINKGNINLIDAYSTDAELKQYDMVVLKDDKHVFPPYQGAPLFKESFLKKHPEIKKPLNKLENKISDEDMQMMNYKVTVKNEDPYTVAKDYLKAKGLIK
>CP030138.1|QAZ58728.1|819514_820492_+|ABC-transporter-ATP-binding-protein
MIKFKNVTKRYGKHVAVDNISFNINEGEFFVLIGPSGCGKTTTLKMINRLIHLSEGYIYFKDKPISDYPVYEMRWDIGYVLQQIALFPHMTIKENIAQVPQMKKWKEKDIDKRVDELLEMVGLEPEKYKNRKPDELSGGQRQRVGVIRALAADPPVILMDEPFSALDPISREKLQDDLIELQTKIKKTIIFVTHDIQEAMKLGDKICLLNEGHIEQIDTPEGFKNNPQSEFVKQFMGSHLEDDAPCVEENAIIRDLDIMKPIDEVTSMSAYPIVYDNQPIEVLYQLLSESERVIVMQEDSVGQYVIDRKDIFKYLSQKKEVAQHD
>CP030138.1|QAZ58727.1|817511_819293_+|DNA-helicase-RecQ
MMQQTLSHYFGYETFRPGQEEIISKVLDHRNVLGVLPTGGGKSICYQVPGLLLGGTTIVISPLISLMKDQVDQLKAMGIQAAFLNSSLTQKEQQRIEKALSNGEIQFLYVAPERFENRYFLNMLQRIKIHLVAFDEAHCISKWGHDFRPSYQNVISKVFTLPQDFTIIALTATATVEVQQDIREKLNIAQTDQIKTSTKRRNLIFKVNPTYQRQKFILDYIKTHDEDAGIIYCSTRKQVEELQEALESQKIESVIYHAGLSNKEREEAQNDFLFDRVKVVVATNAFGMGIDKSNVRFVIHYNMPGDLESYYQEAGRAGRDGLKSECILLFSERDINLHEYFITVSQADDDYKDKMGEKLTKMIQYTKTKKCLEATIVHYFEPNEKLEECEQCSNCVQQDKSYNMTQEAKMIISCIARMKQQESYSVIIQVLRGESTDYIKYKGYDQISTHGLMKGYTTSELSHLIDELRFKGFLNENDEILMCDTSIKKLLSNEVEVFTTPFKQKATEKVFINTVEGVDRVLFSQLVEVRKKLSDKLTIAPVSIFSDYTLEEFAKRKPASKQDMINIDGVGSYKLKHYCPAFLETIQNYKAKV
>CP030138.1|QAZ58726.1|815616_817500_+|ABC-transporter-ATP-binding-protein
MGMEAYKIEHLNKSYADKTIFDNLDLSISEGEKIGLVGINGTGKSTLLKVIGGIDDDFTANVMHPNQYRIRYSSQKQDLNEDMTVFDAVLSSDTTTLRIIKQYEQAVQAYADDQSDKLFKRMMDAQDAMDQHDAWDYNAEIKTILSKLGIHDTTKYIKELSGGQQKRVVLAKTLIEQPDLLLLDEPTNHLDFESISWLINYVKQYPHTVLFVTHDRYFLNEVSTRIIELNRGKLASYPGNYESYIEMRAEREVTLQKQQQKQRALYKEELAWMRAGAKARTTKQQARINRFNDLENEVNQQYKDDKGELNLAYSRLGKQVFELEDLSKAINDKVLFEHLTEIIQKGERIGVVGPNGAGKTTLLNILSGEDQQFEGKLKTGQTVKVAYFKQTDETLDRDIRMIDYLREENEIAKEKDGTSVSITQLLERFLFPSATHGKKVYKLSGGEQKRLYLLRLLVHQPNVLLLDEPTNDLDTETLTILEDYIHTFGGTVITVSHDRYFLNKVAQSYWFIHDGQMEKIIGTFEDYESYKKSLDKNKSTLKQQSKSSTTVRKKNGLSYKEKLEYEQLMKRIEQAEVRMEEIDVLMIEASADYGKIKELNEEKEQLEIQYDLDITRWSELEEIKEQQ
>CP030138.1|QAZ58725.1|813405_815346_+|lipoteichoic-acid-synthase
MSSQKKKISLFAFFLLTVITITLKTYFSYYVDFSLGVKGLVQNLILLMNPYSLVALVLSVFLFFKGKKAFWFMFIGGFLLTFLLYANVVYFRFFSDFLTFSTLNQVGNVESMGGAVSASFKWYDFVYFIDTLVYLFILIFKTKWLDTKAFSKKFVPVVMAASVALFFLNLAFAETDRPELLTRTFDHKYLVKYLGPYNFTVYDGVKTIENNQQKALASEDDLTKVLNYTKQRQTEPNPEYYGVAKKKNIIKIHLESFQTFLINKKVNGKEVTPFLNKLSSGKEQFTYFPNFFHQTGQGKTSDSEFTMDNSLYGLPQGSAFSLKGDNTYQSLPAILDQKQGYKSDVMHGDYKTFWNRDQVYKHFGIDKFYDATYYDMSDKNVVNLGLKDKIFFKDSANYQAKMKSPFYSHLITLTNHYPFTLDEKDATIEKSNTGDATVDGYIQTARYLDEALEEYINDLKKKGLYDNSVIMIYGDHYGISENHNNAMEKLLGEKITPAKFTDLNRTGFWIKIPGKSGGINNEYAGQVDVMPTILHLAGIDTKNYLMFGTDLFSKGHNQVVPFRNGDFITKDYKYVNGKIYSNKNNELITTQPADFEKNKKQVEKDLEMSDNVLNGDLFRFYKNPDFKKVNPSKYKYETGPKANSKK
>CP030138.1|QAZ58724.1|811927_812932_+|allophanate-hydrolase-subunit-2-family-protein
MSIIIEKSGLFSSFQDFGRRGYEHDGVIPCGALDTLAHEIANRLVANDKNEATLEMTNKMATIRFTEPTLIALAGGNVKAYTEHMTISPYKLYLLDKGDVLKFRETSYTSRVYLAVGGGFELDAWLGSNSTDFNVKIGGFKGRTLQDGDEIKLKRDYTARHHKLFENLAHTKQTDWGIDGYALSFNYMSDVFHVVKNKGTEDFKEDAIQRFVKHDYKVTSKANRMGMMLEGEKIKAFYEDMPPYQTVKKGTIQIKRDGTPIILLNDHYTLGSYPQIGTIASYHLTKLAQKPQGSRLKFQFIDILTAEKNLVKYSNWLNQLFHGIEYRMQLEMMK
>CP030138.1|QAZ58723.1|811233_811944_+|allophanate-hydrolase
MKIYSQGDQAIVVAIEKEVSKSLTEDLLTLRSYLIEQNYPFIIEIVPSESDMMIVYDARDMIKHHNIQSPFLYMKALIESIHLNIKHDFNQQDLIEIPIVYGSKYGPDLESLLKHYKIKLETFIELHSKAQYFVSMMGYSPGFPYLTGLNKKLYINHTSKQKKFIPAGSVVLEGKKCGIVTTDTINDWLVIGYTPLSLFNPKESDFARLKLGDNIKFRPINENELEVGAFKDVNHN
>CP030138.1|QAZ58722.1|810939_811146_+|hypothetical-protein
MIIVYIVLLLILVYVNYRLVNRLLSENRIYVVRLIATITTVISFILVYALIHELMPFVVRAMDLMYHQ
>CP030138.1|QAZ58733.1|824869_825787_-|lipid-kinase
MENKYTHGVLFYHEHSGLKNINQGIGEVTTALSSICKHLSIQLSENEGDIIKYCQEIKTKNYAKDVDILFILGGDGTVNELINGVMTHDLQLPIGILPGGTFNDFTKTLNIAPNHKQASEQMISAQVGTYDVIKINNQYALNFVGLGLIVQNAENVQDGSKDIFGKLSYIGSTVKTLLNPTQFNYQLSIDDKTYSGETTMILTANGPFIGGSRIPLTDLSPQDGELNTFIFNEQSFSILNDIFKKRDSMNWNEITQGIEHIPGKKISLTTDPAMKVDIDGEISLETPIDIEVIPNAIQLLTVNDL
>CP030138.1|QAZ58734.1|825877_825979_+|hypothetical-protein
MVINEIDFYRVGRENIVIAVYNEHIKFLFILIS
>CP030138.1|QAZ58735.1|826056_827562_-|peptide-MFS-transporter
MTQQNSHGNQIQDIPQTGFFGHPRGLGVLFFVEFWERFSYYGMRALLIFYMYFAVTDNGLGIDKTTAMSIMSVYGSLIYMTSIPGGWIADRITGTRGATLLGAVFIIIGHICLSLPFALIGLFTSMFFIIIGSGLMKPNISNIVGRLYPENDRRMDAGFVIFYMSVNMGALLSPIILQHFVNVKNFHGGFLIAAVGMALGLVWYVLFNRKNLGSVGMKPTNPLTPAEKKKYGLIIGSVVLAIVLIIVIGALTNSLSFNLVSNTVLVLGIALPIIYFTLIIRSKDVTDTERSRVKAFIPLFILGMVFWAIQEQGSNVLNIYGIEHSDMKLNLFGWKTNFGEAIFQSINPLFILLLAPIISLLWQKLGTKQPSLPVKFAIGTFLAGASYILIGIVGYASGSSNFSVNWVILSYIICVIGELCLSPTGNSAAVKLAPKAFNAQMMSIWYLTNASAQAINGTLVKLIEPLGQTNYFIFLGVVAIIVTTIVLAFSPLIIKAMKGIR
>CP030138.1|QAZ58736.1|827627_827873_-|hypothetical-protein
MIFLTYWCVFHLAYIIGYIKITFYTKVHQKNISTRIKQHFYRNLLHFNVNKYIFILSLINCARLITEYSQYFYFFVICWNI
>CP030138.1|QAZ58737.1|827902_828403_-|NADPH-dependent-7-cyano-7-deazaguanine-reductase-QueF
MAHGRQQDELQDITLLGNQDNTYNFDYRPDVLESFDNKHQGRDYFVKFNCPEFTSLCPITGQPDFATIYISYIPNVKMVESKSLKLYLFSFRNHGDFHEDCMNIIMNDLIELMDPHYIEVWGKFTPRGGISIDPYTNYGRPNSKYEKMAEHRLMNHDLYPEKIDNR
>CP030138.1|QAZ58738.1|828422_829289_-|DMT-family-transporter
MNPKVKGIIAILISAIGFSFMSVFFRLAGDLPVFQKSLARNLVAMFIPLFFIYKYHQPMFGRLSSQPLLITRSTLGLIGVLLNIYAIDHMVLSDADSLMKLNPFWTILLSIVFLHEKVRKYQITAMIIAILGMLLIVKPEFSSSMIPSLAGLFSGIFAASAYTCVRALSTREAPYTIVFYFSLFSVIVLIPFTAYTYEPMSQMQILYLLGAGLAAAVGQIGVTLAYSFAAAKDISIFTYASIIFTAILGFILFGESPDFYATLGYVVIIGASYYMFEKARRDAKIIKK
>CP030138.1|QAZ58739.1|829673_829940_+|ribonucleoside-diphosphate-reductase
MCLMYNETHNIVLVKRKRHNILCFVCKCFIYEEITFKSNLTQKFNSYYQLIVIFLENVLSKWKISNDVNTTYSDFYTFNPYKLLFSQI
>CP030138.1|QAZ58740.1|830089_830488_+|protein-NrdI
MKIIYFSFTGNVRRFIKRTELENTLEITAENCMEPVHEPFIIVTGTIGFGEVPEPVQSFLEVNHQYIRGVAASGNRNWGLNFAKAGRTISEEYNVPLLMKFELHGKNKDVIEFKNKVGNFNENHGREKVQSY
>CP030138.1|QAZ58741.1|830450_832556_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-alpha
MKTMEEKKYNHIELNNEVTKRREDGFFSLEKDQEALVAYLEEVKDKTIFFDTEIERLRYLVDNDFYFNVFDIYSEADLIEITDYAKSIPFNFASYMSASKFFKDYALKTNDKSQYLEDYNQHVAIVALYLANGNKAQAKQFISAMVEQRYQPATPTFLNAGRARRGELVSCFLLEVDDSLNSINFIDSTAKQLSKIGGGVAINLSKLRARGEAIKGIKGVAKGVLPIAKSLEGGFSYADQLGQRPGAGAVYLNIFHYDVEEFLDTKKVNADEDLRLSTISTGLIVPSKFFDLAKEGKDFYMFAPHTVKEEYGVTLDDIDLEKYYDDMVANPNVEKKKKNAREMLNLIAQTQLQSGYPYLMFKDNANRVHPNSNIGQIKMSNLCTEIFQLQETSIINDYGIEDEIKRDISCNLGSLNIVNVMESGKFRDSVHSGMDALTVVSDVANIQNAPGVRKANSELHSVGLGVMNLHGYLAKNKIGYESEEAKDFANIFFMMMNFYSIERSMEIAKERGIKYQDFEKSDYANGKYFEFYTTQEFEPQFEKVRELFDGMAIPTSEDWKKLQQDVEQYGLYHAYRLAIAPTQSISYVQNATSSVMPIVDQIERRTYGNAETFYPMPFLSPQTMWYYKSAFNTDQMKLIDLIATIQTHIDQGISTILYVNSEISTRELARLYVYAHYKGLKSLYYTRNKLLSVEECTSCSI
>CP030138.1|QAZ58742.1|832673_833645_+|class-1b-ribonucleoside-diphosphate-reductase-subunit-beta
MIAVNWNTQEDMTNMFWRQNISQMWVETEFKVSKDIASWKTLSEAEQDTFKKALAGLTGLDTHQADDGMPLVMLHTTDLRKKAVYSFMAMMEQIHAKSYSHIFTTLLPSSETNYLLDEWVLEEPHLKYKSDKIVANYHKLWGKEASIYDQYMARVTSVFLETFLFFSGFYYPLYLAGQGKMTTSGEIIRKILLDESIHGVFTGLDAQHLRNELSESEKQKADQEMYKLLNDLYLNEESYTKMLYDDLGITEDVLNYVKYNGNKALSNLGFEPYFEEREFNPIIENALDTTTKNHDFFSVKGDGYVLALNVEALQDDDFVFDNK

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Crispr_ID: CP030138_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030138_4

865393-865473

Unclear

Consensus_repeat	Method
TTCTTTATGTTGGGGCCCCGCCAACT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030138_4

>merge|CP030138|4|865393-865473|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACTTGCATTGTTTGTAGAATTTCTTTTCGAAATTCTTTATGTTGGGGCCCCGCCAACT

>CP030138|4|4|865393-865473|CRISPRCasFinder
TTCTTTATGTTGGGGCCCCGCCAACT	TGCATTGTTTGTAGAATTTCTTTTCGAAA
TTCTTTATGTTGGGGCCCCGCCAACT

Protein	Signature genes	Signature genes Name	Protein_function
CP030138.1\|QAZ58772.1\|865709_866642_+\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP030138.1\|QAZ58773.1\|866647_867487_+\|prolipoprotein-diacylglyceryl-transferase	unknown	unknown	gnl\|CDD\|183527
CP030138.1\|QAZ58769.1\|859758_859995_+\|DUF2198-family-protein	unknown	unknown	gnl\|CDD\|227234
CP030138.1\|QAZ58763.1\|853733_856265_+\|preprotein-translocase-subunit-SecA	unknown	unknown	gnl\|CDD\|237259
CP030138.1\|QAZ58775.1\|867987_869427_+\|tetratricopeptide-repeat-protein	unknown	unknown	gnl\|CDD\|276808
CP030138.1\|QAZ58778.1\|871252_872164_+\|RNase-adapter-RapZ	unknown	unknown	gnl\|CDD\|224574
CP030138.1\|QAZ58765.1\|856579_857690_+\|peptide-chain-release-factor-2	unknown	unknown	gnl\|CDD\|234799
CP030138.1\|QAZ58779.1\|872160_873156_+\|YvcK-family-protein	unknown	unknown	gnl\|CDD\|211689
CP030138.1\|QAZ58776.1\|869493_870429_+\|thioredoxin-disulfide-reductase	unknown	unknown	gnl\|CDD\|273540
CP030138.1\|QAZ58781.1\|874782_875370_+\|ATP-dependent-Clp-protease-proteolytic-subunit	unknown	unknown	gnl\|CDD\|178955
CP030138.1\|QAZ58768.1\|859111_859762_+\|HD-domain-containing-protein	unknown	unknown	gnl\|CDD\|378993
CP030138.1\|QAZ58770.1\|860263_862249_+\|excinuclease-ABC-subunit-UvrB	unknown	unknown	gnl\|CDD\|235395
CP030138.1\|QAZ58764.1\|856306_856411_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58767.1\|858098_858938_+\|CHAP-domain-containing-protein	unknown	unknown	gnl\|CDD\|226451
CP030138.1\|QAZ58777.1\|870774_870909_-\|nitrogen-fixation-protein-NifR	unknown	unknown	unknown
CP030138.1\|QAZ58762.1\|852747_853320_+\|ribosomal-subunit-interface-protein	unknown	unknown	gnl\|CDD\|224461
CP030138.1\|QAZ58774.1\|867494_867980_+\|acetyltransferase	unknown	unknown	gnl\|CDD\|100053
CP030138.1\|QAZ58780.1\|873265_874210_+\|DNA-binding-protein-WhiA	unknown	unknown	gnl\|CDD\|273194
CP030138.1\|QAZ58771.1\|862256_865103_+\|excinuclease-ABC-subunit-A	unknown	unknown	gnl\|CDD\|234734
CP030138.1\|QAZ58766.1\|857843_857951_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP030138.1\|QAZ58772.1\|865709_866642_+\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.22623e-170
CP030138.1\|QAZ58773.1\|866647_867487_+\|prolipoprotein-diacylglyceryl-transferase	gnl\|CDD\|183527	PRK12437, PRK12437, prolipoprotein diacylglyceryl transferase; Reviewed.	1.39921e-119
CP030138.1\|QAZ58778.1\|871252_872164_+\|RNase-adapter-RapZ	gnl\|CDD\|224574	COG1660, COG1660, Predicted P-loop-containing kinase [General function prediction only].	1.09727e-168
CP030138.1\|QAZ58763.1\|853733_856265_+\|preprotein-translocase-subunit-SecA	gnl\|CDD\|237259	PRK12904, PRK12904, preprotein translocase subunit SecA; Reviewed.	0
CP030138.1\|QAZ58775.1\|867987_869427_+\|tetratricopeptide-repeat-protein	gnl\|CDD\|276808	sd00008, TPR_YbbN, C-terminal Tetratricopeptide repeat (TPR) region of YbbN and similar motifs. The Tetratricopeptide repeat (TPR) typically contains 34 amino acids and is found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans. It is present in a variety of proteins including those involved in chaperone, cell-cycle, transcription, and protein transport complexes. YbbN is a thioredoxin-like protein containing two tandem TPR repeats at the C-terminus, separated by two alpha helices. Its N-terminal thioredoxin-like domain is not a functional oxidoreductase. It functions in heat stress response and DNA synthesis as a chaperone or co-chaperone.	4.31987e-06
CP030138.1\|QAZ58765.1\|856579_857690_+\|peptide-chain-release-factor-2	gnl\|CDD\|234799	PRK00578, prfB, peptide chain release factor 2; Validated.	0
CP030138.1\|QAZ58779.1\|872160_873156_+\|YvcK-family-protein	gnl\|CDD\|211689	TIGR01826, Putative_gluconeogenesis_factor, conserved hypothetical protein, cofD-related. This model represents a subfamily of conserved hypothetical proteins that forms a sister group to the family of CofD, (TIGR01819), LPPG:Fo 2-phospho-L-lactate transferase, an enzyme of cytochrome F420 biosynthesis. Both this family and TIGR01819 are within the scope of the pfam01933. [Hypothetical proteins, Conserved].	5.06652e-172
CP030138.1\|QAZ58776.1\|869493_870429_+\|thioredoxin-disulfide-reductase	gnl\|CDD\|273540	TIGR01292, Thioredoxin_reductase, thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (pfam00070). [Energy metabolism, Electron transport].	4.19425e-154
CP030138.1\|QAZ58781.1\|874782_875370_+\|ATP-dependent-Clp-protease-proteolytic-subunit	gnl\|CDD\|178955	PRK00277, clpP, ATP-dependent Clp protease proteolytic subunit; Reviewed.	4.59321e-148
CP030138.1\|QAZ58768.1\|859111_859762_+\|HD-domain-containing-protein	gnl\|CDD\|378993	pfam12917, HD_2, HD containing hydrolase-like enzyme. This is a family of bacterial and archaeal hydrolases.	6.51021e-58
CP030138.1\|QAZ58770.1\|860263_862249_+\|excinuclease-ABC-subunit-UvrB	gnl\|CDD\|235395	PRK05298, PRK05298, excinuclease ABC subunit UvrB.	0
CP030138.1\|QAZ58774.1\|867494_867980_+\|acetyltransferase	gnl\|CDD\|100053	cd04647, LbH_MAT_like, Maltose O-acyltransferase (MAT)-like: This family is composed of maltose O-acetyltransferase, galactoside O-acetyltransferase (GAT), xenobiotic acyltransferase (XAT) and similar proteins. MAT and GAT catalyze the CoA-dependent acetylation of the 6-hydroxyl group of their respective sugar substrates. MAT acetylates maltose and glucose exclusively while GAT specifically acetylates galactopyranosides. XAT catalyzes the CoA-dependent acetylation of a variety of hydroxyl-bearing acceptors such as chloramphenicol and streptogramin, among others. XATs are implicated in inactivating xenobiotics leading to xenobiotic resistance in patients. Members of this family contain a a left-handed parallel beta-helix (LbH) domain with at least 5 turns, each containing three imperfect tandem repeats of a hexapeptide repeat motif (X-[STAV]-X-[LIV]-[GAED]-X). They are trimeric in their active form.	4.85181e-30
CP030138.1\|QAZ58767.1\|858098_858938_+\|CHAP-domain-containing-protein	gnl\|CDD\|226451	COG3942, COG3942, Surface antigen [General function prediction only].	1.11098e-41
CP030138.1\|QAZ58762.1\|852747_853320_+\|ribosomal-subunit-interface-protein	gnl\|CDD\|224461	COG1544, COG1544, Ribosome-associated protein Y (PSrp-1) [Translation, ribosomal structure and biogenesis].	1.13584e-37
CP030138.1\|QAZ58780.1\|873265_874210_+\|DNA-binding-protein-WhiA	gnl\|CDD\|273194	TIGR00647, DNA_bind_WhiA, DNA-binding protein WhiA. This family describes a DNA-binding protein widely conserved in Gram-positive bacteria, and occasionally occurring elsewhere, such as in Thermotoga. It is associated with cell division, and in sporulating organisms with sporulation. [Cellular processes, Cell division].	7.40812e-153
CP030138.1\|QAZ58771.1\|862256_865103_+\|excinuclease-ABC-subunit-A	gnl\|CDD\|234734	PRK00349, uvrA, excinuclease ABC subunit UvrA.	0
CP030138.1\|QAZ58769.1\|859758_859995_+\|DUF2198-family-protein	gnl\|CDD\|227234	COG4897, CsbA, Uncharacterized protein conserved in bacteria [Function unknown].	4.73465e-34

>CP030138.1|QAZ58771.1|862256_865103_+|excinuclease-ABC-subunit-A
MKEPSIVVKGARAHNLKDIDIELPKNKLIVMTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDVDTIEGLSPAISIDQKTTSKNPRSTVATVTEIYDYIRLLYARVGKPYCPNHNIEIESQTVQQMVDRIMELEARTKIQLLAPVIAHRKGSHEKLIEDIGKKGYVRLRIDGEIVDVNDVPTLDKNKNHTIEVVVDRLVVKDGIETRLADSIETALELSEGQLTVDVIDGEDLKFSESHACPICGFSIGELEPRMFSFNSPFGACPTCDGLGQKLTVDVDLVVPDKDKTLNEGAIEPWIPTSSDFYPTLLKRVCEVYKINMDKPFKKLTERQRDILLYGSGDKEIEFTFTQRQGGTRKRTMVFEGVVPNISRRFHESPSEYTREMMSKYMTELPCETCHGKRLSREALSVYVGGLNIGEVVEYSISQALNYYKNIDLSEQDQAIANQILKEIISRLTFLNNVGLEYLTLNRASGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLINTLKEMRDLGNTLIVVEHDDDTMRAADYLVDIGPGAGEHGGQIVSSGTPQKVMKDKKSLTGQYLSGKKRIEVPEYRRPASDRKISIRGARSNNLKGVDVDIPLSIMTVVTGVSGSGKSSLVNEVLYKSLAQKINKSKVKPGLYDKIEGIDQLDKIIDIDQSPIGRTPRSNPATYTGVFDDIRDVFAQTNEAKIRGYQKGRFSFNVKGGRCEACKGDGIIKIEMHFLPDVYVPCEVCDGKRYNRETLEVTYKGKNIADILEMTVEEATQFFENIPKIKRKLQTLVDVGLGYVTLGQQATTLSGGEAQRVKLASELHKRSTGKSIYILDEPTTGLHVDDISRLLKVLNRLVENGDTVVIIEHNLDVIKTADYIIDLGPEGGSGGGTIVATGTPEDIAQTKSSYTGKYLKEVLERDKQNTEDK
>CP030138.1|QAZ58770.1|860263_862249_+|excinuclease-ABC-subunit-UvrB
MVEHYPFKIHSDFEPQGDQPQAIKEIVEGIKAGKRHQTLLGATGTGKTFTMSNVIKEVGKPTLIIAHNKTLAGQLYSEFKEFFPENRVEYFVSYYDYYQPEAYVPSTDTFIEKDASINDEIDQLRHSATSALFERDDVIIIASVSCIYGLGNPEEYKDLVVSVRVGMEMDRSELLRKLVDVQYTRNDIDFQRGTFRVRGDVVEIFPASKEELCIRVEFFGDEIDRIREVNYLTGEVLKEREHFAIFPASHFVTREEKLKVAIERIEKELEERLKELRDENKLLEAQRLEQRTNYDLEMMREMGFCSGIENYSVHLTLRPLGSTPYTLLDYFGDDWLVMIDESHVTLPQVRGMYNGDRARKQVLVDHGFRLPSALDNRPLKFEEFEEKTKQLVYVSATPGPYEIEHTDKMVEQIIRPTGLLDPKIEVRPTENQIDDLLSEIQTRVERNERVLVTTLTKKMSEDLTTYMKEAGIKVNYLHSEIKTLERIEIIRDLRMGTYDVIVGINLLREGIDIPEVSLVVILDADKEGFLRSNRSLIQTIGRAARNDKGEVIMYADKMTDSMKYAIDETQRRREIQMKHNEKHGITPKTINKKIHDLISATVENDENNDKAQTVIPKKMTKKERQKTIDNIEKEMKQAAKDLDFEKATELRDMLFELKAEG
>CP030138.1|QAZ58769.1|859758_859995_+|DUF2198-family-protein
MIWYFSAAFFPCVLVVLFSVITRSKWVGTILTLILIGASIYKEYFHNEWIIFIDVVSLLAGYLIIDQLEFHKHQDEDR
>CP030138.1|QAZ58768.1|859111_859762_+|HD-domain-containing-protein
MGVHQYFKRLSDMERLIRLPGKFKYFEHNVAAHSFKVTKIAQYLATVEEYHGRKINWKSLYEKALNHDFAEVFTGDIKTPVKYASSELKKLFSQVEEEMVETFIEEEIPLQYRDVYKQRLQEGKDDSLEGQILSVADKIDLLYETFGEIQKRNPEELFFEIYEMSLETIIQFDHLASVQDFINNIIPEMLTENFIPRTELRETTMNILNKRKEENE
>CP030138.1|QAZ58767.1|858098_858938_+|CHAP-domain-containing-protein
MKKSLTVTVSSVLAFLALNNAAHAQQHGTQVKTPVQHNYVSNVQAQTQSPTTYTVVAGDSLYKIALEHHLTLNQLYSYNPGVTPLIFPGDVISLVPQNKVKQTKAVKSPVRKASQAKKVVKQPVQQASKKVVVKQAPKQAVTKTVNVAYKPAQVQKSVPTVPVAHNYNKSVANRGSLYAYGNCTYYAFDRRAQLGRSIGSLWGNANNWNYAAKVAGFKVDKTPEVGAIFQTAAGPYGHVGVVESVNPNGTITVSEMNYAGFNVKSSRTILNPGKYNYIH
>CP030138.1|QAZ58766.1|857843_857951_+|hypothetical-protein
MCLLKQHMQCAFSNITYGDFQGIELIIENVLNYMV
>CP030138.1|QAZ58765.1|856579_857690_+|peptide-chain-release-factor-2
MELSEIKRNIDKYNQDLTQIRGSLDLENKETNIQEYEEMMAEPNFWDNQTKAQDIIDKNNALKAIVNGYKTLQAEVDDMDATWDLLQEEFDEEMKEDLEQEVINFKAKVDEYELQLLLDGPHDANNAILELHPGAGGTESQDWANMLFRMYQRYCEKKGFKVETVDYLPGDEAGIKSVTLLIKGHNAYGYLKAEKGVHRLVRISPFDSSGRRHTSFASCDVIPDFNNDEIEIEINPDDITVDTFRASGAGGQHINKTESAIRITHHPSGIVVNNQNERSQIKNREAAMKMLKSKLYQLKLEEQAREMAEIRGEQKEIGWGSQIRSYVFHPYSMVKDHRTNEETGKVDAVMDGDIGPFIESYLRQTMSHD
>CP030138.1|QAZ58764.1|856306_856411_+|hypothetical-protein
MLWEESFYFTSVKYFKKCEEVVKRCYVLSFKKSV
>CP030138.1|QAZ58763.1|853733_856265_+|preprotein-translocase-subunit-SecA
MGFLSKILDGNNKEIKQLGKLADKVIALEEKTAILTDEEIRNKTKQFQTELADIDNVKKQNDYLDKILPEAYALVREGSKRVFNMTPYKVQIMGGIAIHKGDIAEMRTGEGKTLTATMPTYLNALAGRGVHVITVNEYLSSVQSEEMAELYNFLGLTVGLNLNSKTTEEKREAYAQDITYSTNNELGFDYLRDNMVNYSEDRVMRPLHFAIIDEVDSILIDEARTPLIISGEAEKSTSLYTQANVFAKMLKQDEDYKYDEKTKAVHLTEQGADKAERMFKVENLYDVQNVDVISHINTALRAHVTLQRDVDYMVVDGEVLIVDQFTGRTMPGRRFSEGLHQAIEAKEGVQIQNESKTMASITFQNYFRMYNKLAGMTGTAKTEEEEFRNIYNMTVTQIPTNKPVQRNDKSDLIYISQKGKFDAVVEDVVEKHKAGQPVLLGTVAVETSEYISNLLKKRGIRHDVLNAKNHEREAEIVAGAGQKGAVTIATNMAGRGTDIKLGEGVEELGGLAVIGTERHESRRIDDQLRGRSGRQGDKGDSRFYLSLQDELMIRFGSERLQKMMSRLGLDDSTPIESKMVSRAVESAQKRVEGNNFDARKRILEYDEVLRKQREIIYNERNSIIDEEDSSQVVDAMLRSTLQRSINYYINTADDEPEYQPFIDYINDIFLQEGDITEDDIKGKDAEDIFEVVWAKIEAAYQSQKDILEEQMNEFERMILLRSIDSHWTDHIDTMDQLRQGIHLRSYAQQNPLRDYQNESHELFDIMMQNIEEDTCKFILKSVVQVEDNIEREKTTEFGEAKHVSAEDGKEKVKPKPIVKGDQVGRNDDCPCGSGKKFKNCHGK
>CP030138.1|QAZ58762.1|852747_853320_+|ribosomal-subunit-interface-protein
MIRFEIHGDNLTITDAIRNYIEEKIGKLERYFNDVPNAVAHVKVKTYSNSATKIEVTIPLKNVTLRAEERNDDLYAGIDLINNKLERQVRKYKTRINRKSRDRGDQEVFVAELQEMQETQVDNDAYDDNEIEIIRSKEFSLKPMDSEEAVLQMNLLGHDFFVFTDRETDGTSIVYRRKDGKYGLIQTSEQ
>CP030138.1|QAZ58772.1|865709_866642_+|HPr-kinase/phosphorylase
MLTTEKLVETLKLDLIAGEEGLSKPIKNADISRPGLEMAGYFSHYASDRIQLLGTTELSFYNLLPDKDRAGRMRKLCRPETPAIIVTRGLQPPEELVEAAKELNTPLIVAKDATTSLMSRLTTFLEHALAKTTSLHGVLVDVYGVGVLITGDSGIGKSETALELVKRGHRLVADDNVEIRQINKDELIGKPPKLIEHLLEIRGLGIINVMTLFGAGSILTEKRIRLNINLENWNKQKLYDRVGLNEETLSILDTEITKKTIPVRPGRNVAVIIEVAAMNYRLNIMGINTAEEFSERLNEEIIKNSHKSEE
>CP030138.1|QAZ58773.1|866647_867487_+|prolipoprotein-diacylglyceryl-transferase
MGIVFNYIDPVAFNLGPLSVRWYGIIIAVGILLGYFVAQRALVKAGLHKDTLVDIIFYSALFGFIAARIYFVIFQWPYYAENPSEIIKIWHGGIAIHGGLIGGFIAGVIVCKVKNLNPFQIGDIVAPSIILAQGIGRWGNFMNHEAHGGSVSRAFLEQLHLPNFIIENMYINGQYYHPTFLYESIWDVAGFIILVNIRKHLKLGETFFLYLTWYSIGRFFIEGLRTDSLMLTSNIRVAQLVSILLILISISLIVYRRIKYNPPLYSKVGALPWPTKKVK
>CP030138.1|QAZ58774.1|867494_867980_+|acetyltransferase
MRKFLSKTHHHTNPLWRVYRLVKFSKVFKNVIIIEFSKFIPSMVLKRHIYKQLLNINIGNQSSIAYKVMLDIFYPELITIGSNSVIGYNVTILTHEALVDEFRYGPVTIGSNTLIGANATILPGITIGDNVKVAAGTVVSKDIPDNGFAYGNPMYIKMIRR
>CP030138.1|QAZ58775.1|867987_869427_+|tetratricopeptide-repeat-protein
MAQKNNNVIPMTFDDAFYRKMAKQKFKQREYKRAAEYFEKVLELSPDDMEIQIDYAQCLVQLGIAKKAEHLFYDNIIYNRHLEDSFYELSQLNIEVNEPNKAFLFGINYVIVSDDQDYRDELDQMFDVKYQSEEQIELEAQLFVVQILFQYLFSQGRLKDAKNYVLHQPQEVQDHRVVRNLLAMCYLYLGEYDTAKALYEALLQEDSTDIYALCHYTLLLYNTKENEQYQKYLKILNKVVPMNDDESFKLGIVLSYLKQYRASQQLLYPLYKKGKFLSIQMYNALAYNYYYLGEEDESHYYWDKLKQISKVEIGHAPWVIENSKEVFDQHILPLLQSDDSHYRLYGIFLLDQLNGKEIVMTESIWQVLENLNNYEKLYLTYLVQGLTLNKLDFIHRGLLTLYHNELFVSENDVMVAWINQGELIIAEKVDLSDVEPYIGAFIYLYFKNQPRNVTKKQITTWLGITQYKLNKMIEFLLSI
>CP030138.1|QAZ58776.1|869493_870429_+|thioredoxin-disulfide-reductase
MTEIDFDIAIIGAGPAGMTAAVYASRANLKTVMIERGIPGGQMANTEEVENFPGFEMITGPDLSTKMFEHAKKFGAVYQYGDIKSVEDKGEYKVINFGNKELTAKAVIIATGAEYKKIGVPGEQELGGRGVSYCAVCDGAFFKNKRLFVIGGGDSAVEEGTFLTKFADKVTIVHRRDELRAQRILQDRAFKNDKIDFIWSHTLKSINEKDGKVGSVTLTSTKDGSEETHEADGVFIYIGMKPLTAPFKDLGITNDVGYIVTKDDMTTSVPGIFAAGDVRDKGLRQIVTATGDGSIAAQSAAEYIEHLNDQA
>CP030138.1|QAZ58777.1|870774_870909_-|nitrogen-fixation-protein-NifR
MGCGPQHREIGFPISTDNASWRGPNTEAGGKSAYNNVQVGVGQR
>CP030138.1|QAZ58778.1|871252_872164_+|RNase-adapter-RapZ
MDNNEKEKSKSELLVVTGLSGVGKSLVIQCLEDMGYFCVDNLPPVLLPKFVELMEQGNPSLRKVAIAIDLRGKELFNSLVAVVDKVKSESDVIIDVMFLEASTEKLISRYKETRRAHPLMEQGKRSLINAINDEREHLSQIRSIANFVIDTTKLSPKELKERIRRYYEDEEFETFTINVTSFGFKHGIQMDADLVFDVRFLPNPYYVVDLRPLTGLDKDVYNYVMKWKETEIFFEKLTDLLDFMIPGYKKEGKSQLVIAIGCTGGQHRSVALAERLGNYLNEVFEYNVYVHHRDAHIESGEKK
>CP030138.1|QAZ58779.1|872160_873156_+|YvcK-family-protein
MRQIKVVLIGGGTGLSVMARGLREFPIDITAIVTVADNGGSTGKIRDEMDIPAPGDIRNVIAALSDSESVLSQLFQYRFEENQISGHSLGNLLIAGMTNITNDFGHAIKALSKILNIKGRVIPSTNTSVQLNAVMEDGEIVFGETNIPKKHKKIDRVFLEPNDVQPMEEAIDALREADLIVLGPGSLYTSVISNLCVNGISDALIHSDAPKLYVSNVMTQPGETDGYSVKDHIDAIHRQAGQPFIDYVICSTQTFNAQVLKKYEEKHSKPVEVNKAELEKESINVKTSSNLVEISENHLVRHNTKVLSTMIYDIALELISTIPFVPSDKRK
>CP030138.1|QAZ58780.1|873265_874210_+|DNA-binding-protein-WhiA
MSFASEMKNELTRIDVDEMNAKAELSALIRMNGALSLSNQQFVINVQTENATTARRIYSLIKRVFNVEVEILVRKKMKLKKNNIYICRTKMKAKEILDELGILKDGIFTHEIDHSMIQDDEMRRSYLRGAFLAGGSVNNPETSSYHLEIFSQNESHAEGLTKLMNSYELNAKHLERKKGSITYLKEAEKISDFLSLIGGYQALLKFEDVRIVRDMRNSVNRLVNCETANLNKTVSAAMKQVESIKLIDKEIGIENLPDRLREIARIRVEHQEISLKELGEMVSTGPISKSGVNHRLRKLNDLADKIRNGEQIEL
>CP030138.1|QAZ58781.1|874782_875370_+|ATP-dependent-Clp-protease-proteolytic-subunit
MNLIPTVIETTNRGERAYDIYSRLLKDRIIMLGSQIDDNVANSIVSQLLFLQAQDSEKDIYLYINSPGGSVTAGFAIYDTIQHIKPDVQTICIGMAASMGSFLLAAGAKGKRFALPNAEVMIHQPLGGAQGQATEIEIAANHILKTREKLNRILSERTGQSIEKIQKDTDRDNFLTAEEAKEYGLIDEVMVPETK

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Crispr_ID: CP030138_5

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030138_5

915260-915341

Orphan

Consensus_repeat	Method
CCCCAACTTGCATTGTCTGTAGAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030138_5

>merge|CP030138|5|915260-915341|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAAATTGGGAATCCAATTTCTCTTTGTTGGGGCCCATCCCCAACTTGCATTGCCTGTAGAA

>CP030138|5|5|915260-915341|CRISPRCasFinder
CCCCAACTTGCATTGTCTGTAGAA	ATTGGGAATCCAATTTCTCTTTGTTGGGGCCCAT
CCCCAACTTGCATTGCCTGTAGAA

Protein	Signature genes	Signature genes Name	Protein_function
CP030138.1\|QAZ58813.1\|909017_909635_-\|amino-acid-transporter	unknown	unknown	gnl\|CDD\|224198
CP030138.1\|QAZ58829.1\|919518_920739_-\|site-specific-integrase	unknown	unknown	gnl\|CDD\|271189
CP030138.1\|QAZ58816.1\|911252_911969_+\|3-dehydroquinase	unknown	unknown	gnl\|CDD\|184156
CP030138.1\|QAZ58818.1\|912740_913061_-\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP030138.1\|QAZ60927.1\|921578_922307_-\|exotoxin	unknown	unknown	gnl\|CDD\|280949
CP030138.1\|QAZ58830.1\|920826_921555_-\|exotoxin	unknown	unknown	gnl\|CDD\|280949
CP030138.1\|QAZ58820.1\|913718_914099_+\|glycine-cleavage-system-protein-H	unknown	unknown	gnl\|CDD\|234918
CP030138.1\|QAZ58828.1\|918553_919375_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|224381
CP030138.1\|QAZ58827.1\|917840_918536_+\|ABC-transporter-permease	unknown	unknown	gnl\|CDD\|224922
CP030138.1\|QAZ58831.1\|922481_923216_-\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP030138.1\|QAZ58821.1\|914162_914276_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58817.1\|912051_912591_+\|nitroreductase	unknown	unknown	gnl\|CDD\|380312
CP030138.1\|QAZ58823.1\|915574_915688_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ58826.1\|916822_917848_+\|methionine-import-ATP-binding-protein-MetN-2	unknown	unknown	gnl\|CDD\|224058
CP030138.1\|QAZ58819.1\|913204_913561_+\|arsenate-reductase-family-protein	unknown	unknown	gnl\|CDD\|239334
CP030138.1\|QAZ58824.1\|915897_916284_+\|topiosmerase	unknown	unknown	gnl\|CDD\|224572
CP030138.1\|QAZ58825.1\|916276_916573_+\|thioredoxin	unknown	unknown	gnl\|CDD\|239245
CP030138.1\|QAZ58814.1\|909789_910284_-\|GNAT-family-N-acetyltransferase	unknown	unknown	gnl\|CDD\|372596
CP030138.1\|QAZ58815.1\|910682_911105_-\|organic-hydroperoxide-reductase-OsmC/OhrA	unknown	unknown	gnl\|CDD\|274649
CP030138.1\|QAZ58822.1\|914277_915156_+\|DUF1963-domain-containing-protein	unknown	unknown	gnl\|CDD\|226395

Protein	Function_ID	Function_description	E-value
CP030138.1\|QAZ58813.1\|909017_909635_-\|amino-acid-transporter	gnl\|CDD\|224198	COG1279, COG1279, Lysine efflux permease [General function prediction only].	9.12336e-62
CP030138.1\|QAZ58816.1\|911252_911969_+\|3-dehydroquinase	gnl\|CDD\|184156	PRK13575, PRK13575, type I 3-dehydroquinate dehydratase.	1.26721e-148
CP030138.1\|QAZ58818.1\|912740_913061_-\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	2.70086e-24
CP030138.1\|QAZ60927.1\|921578_922307_-\|exotoxin	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	7.79999e-28
CP030138.1\|QAZ58830.1\|920826_921555_-\|exotoxin	gnl\|CDD\|280949	pfam02876, Stap_Strp_tox_C, Staphylococcal/Streptococcal toxin, beta-grasp domain.	3.87599e-25
CP030138.1\|QAZ58820.1\|913718_914099_+\|glycine-cleavage-system-protein-H	gnl\|CDD\|234918	PRK01202, PRK01202, glycine cleavage system protein GcvH.	2.81086e-68
CP030138.1\|QAZ58828.1\|918553_919375_+\|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein	gnl\|CDD\|224381	COG1464, NlpA, ABC-type metal ion transport system, periplasmic component/surface antigen [Inorganic ion transport and metabolism].	2.15951e-112
CP030138.1\|QAZ58827.1\|917840_918536_+\|ABC-transporter-permease	gnl\|CDD\|224922	COG2011, AbcD, ABC-type metal ion transport system, permease component [Inorganic ion transport and metabolism].	9.67625e-100
CP030138.1\|QAZ58831.1\|922481_923216_-\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	5.1934e-12
CP030138.1\|QAZ58825.1\|916276_916573_+\|thioredoxin	gnl\|CDD\|239245	cd02947, TRX_family, TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functional TRXs have been reported in most organisms; in eukaryotes, they are located in the cytoplasm and the mitochondria. Higher plants contain more types (at least 20 TRX genes have been detected in the genome of Arabidopsis thaliana), two of which (types f amd m) are located in the same compartment, the chloroplast. Also included in the alignment are TRX-like domains which show sequence homology to TRX but do not contain the redox active CXXC motif. Group II proteins, in addition to either a redox active TRX or a TRX-like domain, also contain additional domains, which may or may not possess homology to known proteins.	7.01368e-14
CP030138.1\|QAZ58817.1\|912051_912591_+\|nitroreductase	gnl\|CDD\|380312	cd02135, YdjA-like, nitroreductase family protein similar to Escherichia coli YdjA. A subfamily of the nitroreductase family containing uncharacterized proteins that are similar to nitroreductase YdjA from Escherichia coli. Nitroreductase catalyzes the reduction of nitroaromatic compounds such as nitrotoluenes, nitrofurans and nitroimidazoles. This process requires NAD(P)H as electron donor in an obligatory two-electron transfer and uses FMN as cofactor. The enzyme is typically a homodimer. Members of this family are also called NADH dehydrogenase, oxygen-insensitive NAD(P)H nitrogenase or dihydropteridine reductase.	1.47647e-49
CP030138.1\|QAZ58826.1\|916822_917848_+\|methionine-import-ATP-binding-protein-MetN-2	gnl\|CDD\|224058	COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism].	3.37873e-170
CP030138.1\|QAZ58819.1\|913204_913561_+\|arsenate-reductase-family-protein	gnl\|CDD\|239334	cd03036, ArsC_like, Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.	1.06191e-56
CP030138.1\|QAZ58824.1\|915897_916284_+\|topiosmerase	gnl\|CDD\|224572	COG1658, COG1658, Small primase-like proteins (Toprim domain) [DNA replication, recombination, and repair].	2.45102e-36
CP030138.1\|QAZ58829.1\|919518_920739_-\|site-specific-integrase	gnl\|CDD\|271189	cd01189, INT_ICEBs1_C_like, C-terminal catalytic domain of integrases from bacterial phages and conjugate transposons. This family of tyrosine based site-specific integrases is has origins in bacterial phages and conjugate transposons. One member is the integrase from Bacillus subtilis conjugative transposon ICEBs1. ICEBs1 can be excised and transfered to various recipients in response to DNA damage or high concentrations of potential mating partners. The family belongs to the superfamily of DNA breaking-rejoining enzymes, which share the same fold in their catalytic domain and the overall reaction mechanism. The catalytic domain contains six conserved active site residues. Their overall reaction mechanism involves cleavage of a single strand of a DNA duplex by nucleophilic attack of a conserved tyrosine to give a 3' phosphotyrosyl protein-DNA adduct. In the second rejoining step, a terminal 5' hydroxyl attacks the covalent adduct to release the enzyme and generate duplex DNA.	1.81902e-37
CP030138.1\|QAZ58814.1\|909789_910284_-\|GNAT-family-N-acetyltransferase	gnl\|CDD\|372596	pfam13420, Acetyltransf_4, Acetyltransferase (GNAT) domain.	2.53639e-47
CP030138.1\|QAZ58815.1\|910682_911105_-\|organic-hydroperoxide-reductase-OsmC/OhrA	gnl\|CDD\|274649	TIGR03561, organ_hyd_perox, peroxiredoxin, Ohr subfamily. pfam02566, OsmC-like protein, contains several deeply split clades of homologous proteins. The clade modeled here includes the protein Ohr, or organic hydroperoxide resistance protein. [Cellular processes, Detoxification].	5.58225e-61
CP030138.1\|QAZ58822.1\|914277_915156_+\|DUF1963-domain-containing-protein	gnl\|CDD\|226395	COG3878, COG3878, Uncharacterized protein conserved in bacteria [Function unknown].	1.16579e-75

>CP030138.1|QAZ58822.1|914277_915156_+|DUF1963-domain-containing-protein
MLNIQDVSHLSKKEQKAYNRFVESVENGNLPVLPCIEMDLKEMQEETLNQSKIGGMPFLKSFKDIPLDENNVPMVLLAQINLDDLPEQQELFPVKEGILQFWISSEDQMYGMSENLKGNNINSRLVYIKEPITDLSLENIQAHLKSLDADNEDIPFSGAFSIEFRLSKQTITCTDYKYDEDVLALWNKVNPSFALKSMFGGYDELMEPVCNTFTAKEPFNQLGGYPYFDQIDPRTNDQELKMYDRVLLQIDSTRDGNSSIIWGDLGIANILVKSTDLEAMKFDDYMYSWDCS
>CP030138.1|QAZ58821.1|914162_914276_+|hypothetical-protein
MKEKLLGTIIWSIATFYYSRMMEIMNLAILKIKIGGS
>CP030138.1|QAZ58820.1|913718_914099_+|glycine-cleavage-system-protein-H
MAVPNELKYSKEHEWVKVEGNVAIIGITEYAQSELGDIVFVELPETDDEINEGDTFGSVESVKTVSELYAPISGKVVEVNEELEDSPEFVNESPYEKAWMVKVEISDESQIEALLTAEKYSEMIGE
>CP030138.1|QAZ58819.1|913204_913561_+|arsenate-reductase-family-protein
MIKFYQYKNCTTCKKAAKFLDEYGVSYEPIDIVQHTPTINEFKTIIANTGVEINKLFNTHGAKYRELDLKNKLQTLSDDEKLELLSSDGMLVKRPLAVMGDKITLGFKEDQYKETWLA
>CP030138.1|QAZ58818.1|912740_913061_-|thioredoxin
MQSIKSNESFKSVINSDTPVIVKFEAGWCPDCRAMDLWIDPIVEQYNDYQWYTVNRDELEDVVVENEVMGIPSLLVFKNGDKIAHLHSANAKSPEQVESFLAETFK
>CP030138.1|QAZ58817.1|912051_912591_+|nitroreductase
MELQQAIANRRSVKKFKRDMHIDDALLYQAIEKAADAPNHGMREPWRVVHVPKDRLGDMSKDISKFAFPNELDKQQCHYDAVTKLGGMLLLILKTDPRQRQNDENYFAFGAYAQNLMLLLYEAGIGTCWKSPLYIYDPKVRKTLGIKKDEVLAGFLYLTDLEGDMPKAPRKNRNLITLY
>CP030138.1|QAZ58816.1|911252_911969_+|3-dehydroquinase
MTHVEVVATIAPQLSIEETLIQKINHRIDAIDVLELRIDQIENVTVDQVAEMITKLKVMQDSFKLLVTYRTKLQGGYGQFTNDSYLNLISDLANINGIDMIDIEWQADIDIEKHQRIITHLQQYNKEVVISHHNFESTPPLDELQFIFFKMQKFNPEYVKLAVMPHNKNDVLNLLQAMSTFSDTMDCKVVGISMSKLGLISRTAQGVFGGALTYGCIGVPQAPGQIDVTDLKAQVTLY
>CP030138.1|QAZ58815.1|910682_911105_-|organic-hydroperoxide-reductase-OsmC/OhrA
MAIHYETKATNVGGRKGHVYTDDRALDIDIVPPAQADGKATNPEQLFAAGYASCFNGAFDLILKQNKVRDAHPEVTLTVRLEDDSDSESPKLSVSIDATIKNVISQEEAEKYLQMAHEFCPYSKATQGNINVDLNVNVVD
>CP030138.1|QAZ58814.1|909789_910284_-|GNAT-family-N-acetyltransferase
MIEIKTLTNNDFNEYKRLVSTVNEEFTQDSHYSQTMTDTLIHDILNQGSPKCIVFGCYENETLIATAALEQIRYVGKEHKSLIKYNFVTNNDKSINSELINFIINYARQNNYESLLTSIVSNNIGAKVFYSALGFDILGFEKNAIKIGNTYFDEHWLFYDLINK
>CP030138.1|QAZ58813.1|909017_909635_-|amino-acid-transporter
MVTAIIHGFILAIGLILPLGAQNVFIFNQGANQPKYRYVLPAIITAGLSDSLLIIIAVVGVSIIIMSLPVLQAIIYIVGLIFLMYMAWTIWHDKPSTDGETQIMSPMKQVSFALSVSLLNPHAILDTIGVIGSSAALYSGSNKIAFTIACISVSWLWFFLLAILGKMVGSIDKTGKLLTIINKISSIIIIIVALMILQKLIQLLF
>CP030138.1|QAZ58823.1|915574_915688_+|hypothetical-protein
MLGPRQLAHYCKLTYHQLLCWGPAIIEKFVIGVFSFG
>CP030138.1|QAZ58824.1|915897_916284_+|topiosmerase
MAIVNKVIIVEGKSDKKRVQQVIAEPVNIICTHGTMSIDKLDDMIESLYDKQVFVLADSDDEGDRIRNWFKRYLSESEHIFIDKTYCQVANCPKQYLAHVLSKHGFTCKKETPLLPNINNERLVLVNE
>CP030138.1|QAZ58825.1|916276_916573_+|thioredoxin
MNNSLDIKDVTTFYEEDKHLIFGYTPTCGTCKVSERMLDIANEILQLPLLKIDLNFYPQFCKDMQIMSTPILLLMNKDKEVKRIYAFKSVTDLLENLK
>CP030138.1|QAZ58826.1|916822_917848_+|methionine-import-ATP-binding-protein-MetN-2
MIELKEVVKEYRTKNKEVLAVDHVNLSIRAGSIYGVIGFSGAGKSTLIRMFNHLEAPTSGEVIIDGDHIGQLSKNGLRAKRQKVSMIFQHFNLLWSRTVLKNIMFPLEIAGVPRRRAKQKALELVELVGLKGREKAYPSELSGGQKQRVGIARALANDPTVLLCDEATSALDPQTTDEILDLLLKIREQQNLTIVLITHEMHVIRRICDEVAVMESGKVIEQGPVTQVFENPQHTVTKRFVKDDLNDDFETSLTELEPLEKDAYIVRLVFAGSTTTEPIVSSLSTAYDIKINILEANIKNTKNGTVGFLVLHIPYISSVDFGKFEKELIERQVKMEVLRHG
>CP030138.1|QAZ58827.1|917840_918536_+|ABC-transporter-permease
MGKSFSEIINEMITMPNIQWPEVWTAIVETLYMTVVSTIFAFILGLILGVLLFLSAKGKSIGARLFYSIVSFIVNLFRAIPFIILILLLIPFTSLILGTISGPTGALPALIIGAAPFYARLVEIAFKEIDKGVIEAAWSMGANTWTVIRKVLLPEAMPALVSGITVTAIALVGSTAVAGVIGAGGLGNLAYLTGFTRNQNDVILVSTVFILIIVFIIQFIGDWLTNKLDKR
>CP030138.1|QAZ58828.1|918553_919375_+|MetQ/NlpA-family-ABC-transporter-substrate-binding-protein
MKKLFGLILVLTFAVVLAACGNGNKSGSDDKKITVGASPAPHAEILEKAKPLLEKKGYELDIKTINDYTTPNKLLDKGEIDANYFQHTPYLNTEKKDKGYKIVSAGDVHLEPMAVYSKKYKSLKELPKGATVYVSNNPAEQGRFLKFFVDAGLIKIKKGVKIEDAKFSDITENKKDIKFNNKQSAEFLPKIYQNEDADAVIINSNFAIEQKLNPKKDSIAVESAKDNPYANLIAVKEGHQDDKKIKALIEVLQSKDIQDFINEKYNGAVIPAK
>CP030138.1|QAZ58829.1|919518_920739_-|site-specific-integrase
MWFEKFKNKNKETKYRYYEKYKDPLTNKWRRVSVVLNKNGKQSQKEAQRLLNERIEAKLNDKTPTTLKSLTFHAASDEWFQNYIKTSGSKRTTIKTKLSKLNTLKKFVDEDILINKITLSYAQQVFDEMDSKGYVYQVNKDALSIFKNVFEYTRRIYKLQDLEFLKDITLNKRIKSYDEVKAKRNKYLELNEIQSIIKDINMKAQKMHSGIHKRFYLFVALMTEFQALNGMRIGEMLAIQNEDIDFDNKSLNINGTIHWFHDESGGFGVKDTTKTESSYRTIGLSSRSCEILKKAILENKKDSKWNDGYLNRNFVFTNHKGNPMQTERFNKILREAAKDVGIDKEVSSHILRHSHISLLSQQGVSLKAIMDRVGHSDHRTTLSIYSHVTEQMDKDMMNKLEQVKLG
>CP030138.1|QAZ58830.1|920826_921555_-|exotoxin
MKKLISILLINIIILGVSNNASAQGDIGIDNLRNFYTKKDFVDLKDVKDNDTPIANQLQFSNESYDLISESKDFNKFSNFKGKKLDVFGISYNGQCNTKYIYGGVTATNEYLDKSRNIPINIWINGNHKTISTNKVSTNKKLVTAQEIDVKLRKYLQEEYNIYGHNGTKKGEEYGHKSKFYSGFNIGKVTFHLNNNDTFSYDLFYTGDDGLPKSFLKIYEDNKTVESEKFHLDVDISYKETI
>CP030138.1|QAZ60927.1|921578_922307_-|exotoxin
MNKIFRILTVSLFFFTFLIKNNLAYADVGVINLRNFYANYEPEKLQGVSSGNFSTSHQLEYIDGKYTLYSQFHNEYEAKRLKDHKVDIFGISYSGLCNTKYMYGGITLANQNLDKPRNIPINLWVNGKQNTISTDKVSTQKKEVTAQEIDIKLRKYLQNEYNIYGFNKTKKGQEYGYQSKFNSGFNKGKITFHLNNEPSFTYDLFYTGTGQAESFLKIYNDNKTIDAENFHLDVEISYEKTE
>CP030138.1|QAZ58831.1|922481_923216_-|XRE-family-transcriptional-regulator
MTFGEILKKERVSWKLSVKELSTLSGVSQTYISKLENGKRNFPSLETIFNLLIGFKTHIEYKMGSESPFYEINNSYLDEILIMFINSSNSTISDRDPNELITQFNEYYDVTIKKKQNENSKIESDIFSNKIKLVKGTTKKEVIEKPYFDLNWLLTQNEYEVFFDRSFLLDNNFLNKKHFTEKDMYYYNVLNDNDLKTIKDLIVVFLLNKYNYIKNKDDFFNIFTNSEDDKTKRDALYKILYETD

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Crispr_ID: CP030138_6

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030138_6

978677-978959

Orphan

Consensus_repeat	Method
AAAGNCAGCTNNNNANANNNTGCAAGTTGG	CRT

4 spacers

The CRISPR arrays of CP030138_6

>merge|CP030138|6|978677-978959|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGGCGGGGCCCCAACACAGAGGCTGGCGGAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGAGCCCCGACACAGAGAAATTAGCTCCTCAATTTCTACAGACAATGCAAGTTGGCGGGGCCCCAACACAGAAGCTGGCGAAAAGTCAGCTTACAATAGTGTGCAAGTTGGGGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAAAAAGACAGCAGTAGGATAATTTCAATTTGG

>CP030138|6|1|978677-978959|CRT
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	CGGGGCCCCAACACAGAGGCTGGCGG
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGAGCCCCGACACAGAGAAATTAGC
TCCTCAATTTCTACAGACAATGCAAGTTGG	CGGGGCCCCAACACAGAAGCTGGCGA
AAAGTCAGCTTACAATAGTGTGCAAGTTGG	GGTGGGACGACGAAATAAATTTTGCGAAAATATCATTTCTGTCCCACTCCCAA
AAAGACAGCAGTAGGATAATTTCAATTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP030138.1\|QAZ58906.1\|986635_990112_+\|ATP-dependent-helicase/deoxyribonuclease-subunit-B	unknown	unknown	gnl\|CDD\|213736
CP030138.1\|QAZ58890.1\|969395_969824_-\|Na+/H+-antiporter-subunit-B	unknown	unknown	gnl\|CDD\|183602
CP030138.1\|QAZ58904.1\|985360_985885_+\|signal-peptidase-I	unknown	unknown	gnl\|CDD\|274044
CP030138.1\|QAZ58908.1\|993931_994834_+\|FAA-hydrolase-family-protein	unknown	unknown	gnl\|CDD\|223257
CP030138.1\|QAZ58891.1\|969816_972222_-\|Na+/H+-antiporter-subunit-A	unknown	unknown	gnl\|CDD\|237155
CP030138.1\|QAZ58892.1\|972352_972736_-\|kinase	unknown	unknown	gnl\|CDD\|378054
CP030138.1\|QAZ58902.1\|983124_984456_+\|glucose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|184504
CP030138.1\|QAZ58893.1\|972799_973393_+\|peptidylprolyl-isomerase	unknown	unknown	gnl\|CDD\|238908
CP030138.1\|QAZ60931.1\|969054_969384_-\|Na(+)/H(+)-antiporter-subunit-C	unknown	unknown	gnl\|CDD\|181497
CP030138.1\|QAZ58907.1\|990112_993766_+\|ATP-dependent-helicase/nuclease-subunit-A	unknown	unknown	gnl\|CDD\|274299
CP030138.1\|QAZ58894.1\|973808_974186_+\|S1-RNA-binding-domain-containing-protein	unknown	unknown	gnl\|CDD\|224023
CP030138.1\|QAZ58899.1\|979028_979958_-\|glycerophosphodiester-phosphodiesterase	unknown	unknown	gnl\|CDD\|176543
CP030138.1\|QAZ58895.1\|974547_975675_+\|NADH-dependent-flavin-oxidoreductase	unknown	unknown	gnl\|CDD\|240086
CP030138.1\|QAZ58905.1\|985900_986476_+\|signal-peptidase-IB	unknown	unknown	gnl\|CDD\|274044
CP030138.1\|QAZ58889.1\|967565_969062_-\|Na+/H+-antiporter-subunit-D	unknown	unknown	gnl\|CDD\|181085
CP030138.1\|QAZ58903.1\|984780_985356_+\|TVP38/TMEM64-family-protein	unknown	unknown	gnl\|CDD\|223475
CP030138.1\|QAZ58900.1\|980199_981579_-\|argininosuccinate-lyase	unknown	unknown	gnl\|CDD\|179143
CP030138.1\|QAZ58896.1\|975982_977173_+\|Ornithine-aminotransferase-2	unknown	unknown	gnl\|CDD\|179736
CP030138.1\|QAZ58901.1\|981568_982774_-\|argininosuccinate-synthase	unknown	unknown	gnl\|CDD\|234785
CP030138.1\|QAZ58897.1\|977281_978526_+\|NAD-specific-glutamate-dehydrogenase	unknown	unknown	gnl\|CDD\|223411

Protein	Function_ID	Function_description	E-value
CP030138.1\|QAZ58906.1\|986635_990112_+\|ATP-dependent-helicase/deoxyribonuclease-subunit-B	gnl\|CDD\|213736	TIGR02773, ATP-dependent_helicase/deoxyribonuclease_subunit_B, helicase-exonuclease AddAB, AddB subunit. DNA repair is accomplished by several different systems in prokaryotes. Recombinational repair of double-stranded DNA breaks involves the RecBCD pathway in some lineages, and AddAB (also called RexAB) in other. The AddA protein is conserved between the firmicutes and the alphaproteobacteria, while the partner protein is not. Nevertheless, the partner is designated AddB in both systems. This model describes the AddB protein as found Bacillus subtilis and related species. Although the RexB protein of Streptococcus and Lactococcus is considered to be orthologous, functionally equivalent, and merely named differently, all members of this protein family have a P-loop nucleotide binding motif GxxGxGK[ST] at the N-terminus, unlike RexB proteins, and a CxxCxxxxxC motif at the C-terminus, both of which may be relevant to function. [DNA metabolism, DNA replication, recombination, and repair].	0
CP030138.1\|QAZ58890.1\|969395_969824_-\|Na+/H+-antiporter-subunit-B	gnl\|CDD\|183602	PRK12573, PRK12573, Na(+)/H(+) antiporter subunit B.	9.17513e-61
CP030138.1\|QAZ58904.1\|985360_985885_+\|signal-peptidase-I	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	2.63848e-48
CP030138.1\|QAZ58908.1\|993931_994834_+\|FAA-hydrolase-family-protein	gnl\|CDD\|223257	COG0179, MhpD, 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway) [Secondary metabolites biosynthesis, transport, and catabolism].	1.0042e-87
CP030138.1\|QAZ58891.1\|969816_972222_-\|Na+/H+-antiporter-subunit-A	gnl\|CDD\|237155	PRK12645, PRK12645, monovalent cation/H+ antiporter subunit A; Reviewed.	0
CP030138.1\|QAZ58892.1\|972352_972736_-\|kinase	gnl\|CDD\|378054	pfam08810, KapB, Kinase associated protein B. This bacterial protein forms an anti-parallel beta sheet with an extending alpha helical region.	1.89892e-52
CP030138.1\|QAZ58902.1\|983124_984456_+\|glucose-6-phosphate-isomerase	gnl\|CDD\|184504	PRK14097, pgi, glucose-6-phosphate isomerase; Provisional.	0
CP030138.1\|QAZ58893.1\|972799_973393_+\|peptidylprolyl-isomerase	gnl\|CDD\|238908	cd01927, cyclophilin_WD40, cyclophilin_WD40: cyclophilin-type peptidylprolyl cis- trans isomerases (cyclophilins) having a WD40 domain. This group consists of several hypothetical and putative eukaryotic and bacterial proteins which have a cyclophilin domain and a WD40 domain. Function of the protein is not known.	3.93388e-65
CP030138.1\|QAZ60931.1\|969054_969384_-\|Na(+)/H(+)-antiporter-subunit-C	gnl\|CDD\|181497	PRK08600, PRK08600, putative monovalent cation/H+ antiporter subunit C; Reviewed.	3.20641e-61
CP030138.1\|QAZ58907.1\|990112_993766_+\|ATP-dependent-helicase/nuclease-subunit-A	gnl\|CDD\|274299	TIGR02785, ATP-dependent_helicase/nuclease_subunit_A, helicase-exonuclease AddAB, AddA subunit, Firmicutes type. AddAB, also called RexAB, substitutes for RecBCD in several bacterial lineages. These DNA recombination proteins act before synapse and are particularly important for DNA repair of double-stranded breaks by homologous recombination. The term AddAB is used broadly, with AddA homologous between the Firmicutes (as modeled here) and the alphaproteobacteria, while the partner AddB proteins show no strong homology across the two groups of species. [DNA metabolism, DNA replication, recombination, and repair].	0
CP030138.1\|QAZ58894.1\|973808_974186_+\|S1-RNA-binding-domain-containing-protein	gnl\|CDD\|224023	COG1098, VacB, Predicted RNA binding protein (contains ribosomal protein S1 domain) [Translation, ribosomal structure and biogenesis].	3.22125e-44
CP030138.1\|QAZ58899.1\|979028_979958_-\|glycerophosphodiester-phosphodiesterase	gnl\|CDD\|176543	cd08601, GDPD_SaGlpQ_like, Glycerophosphodiester phosphodiesterase domain of Staphylococcus aureus and similar proteins. This subfamily corresponds to the glycerophosphodiester phosphodiesterase domain (GDPD) present in uncharacterized glycerophosphodiester phosphodiesterase (GP-GDE, EC 3.1.4.46) from Staphylococcus aureus, Bacillus subtilis and similar proteins. Members in this family show very high sequence similarity to Escherichia coli periplasmic phosphodiesterase GlpQ, which catalyzes the Ca2+-dependent degradation of periplasmic glycerophosphodiesters to produce sn-glycerol-3-phosphate (G3P) and the corresponding alcohols.	5.11302e-151
CP030138.1\|QAZ58895.1\|974547_975675_+\|NADH-dependent-flavin-oxidoreductase	gnl\|CDD\|240086	cd04735, OYE_like_4_FMN, Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.	0
CP030138.1\|QAZ58905.1\|985900_986476_+\|signal-peptidase-IB	gnl\|CDD\|274044	TIGR02227, Inactive_signal_peptidase_IA., signal peptidase I, bacterial type. This model represents signal peptidase I from most bacteria. Eukaryotic sequences are likely organellar. Several bacteria have multiple paralogs, but these represent isozymes of signal peptidase I. Virtually all known bacteria may be presumed to A related model finds a simlar protein in many archaea and a few bacteria, as well as a microsomal (endoplasmic reticulum) protein in eukaryotes. [Protein fate, Protein and peptide secretion and trafficking].	4.05406e-53
CP030138.1\|QAZ58889.1\|967565_969062_-\|Na+/H+-antiporter-subunit-D	gnl\|CDD\|181085	PRK07691, PRK07691, putative monovalent cation/H+ antiporter subunit D; Reviewed.	0
CP030138.1\|QAZ58903.1\|984780_985356_+\|TVP38/TMEM64-family-protein	gnl\|CDD\|223475	COG0398, COG0398, Uncharacterized conserved protein [Function unknown].	1.01759e-40
CP030138.1\|QAZ58900.1\|980199_981579_-\|argininosuccinate-lyase	gnl\|CDD\|179143	PRK00855, PRK00855, argininosuccinate lyase; Provisional.	0
CP030138.1\|QAZ58896.1\|975982_977173_+\|Ornithine-aminotransferase-2	gnl\|CDD\|179736	PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional.	0
CP030138.1\|QAZ58901.1\|981568_982774_-\|argininosuccinate-synthase	gnl\|CDD\|234785	PRK00509, PRK00509, argininosuccinate synthase; Provisional.	0
CP030138.1\|QAZ58897.1\|977281_978526_+\|NAD-specific-glutamate-dehydrogenase	gnl\|CDD\|223411	COG0334, GdhA, Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism].	0

>CP030138.1|QAZ58897.1|977281_978526_+|NAD-specific-glutamate-dehydrogenase
MTENNNLVTSTQGIIKEALHKLGFDEGMYDLIKEPLRMLQVRIPVRMDDGTVKTFTGYRAQHNDAVGPTKGGVRFHPDVDEEEVKALSMWMTLKCGIVNLPYGGGKGGIVCDPRQMSIHEVERLSRGYVRAISQFVGPNKDIPAPDVFTNSQIMAWMMDEYSALDKFNSPGFITGKPIVLGGSHGRDRSTALGVVIAIEQAAKRRNMQIEGAKVVIQGFGNAGSFLAKFLYDLGAKIVGISDAYGALHDPNGLDIDYLLDRRDSFGTVTNLFEETISNKELFELDCDILVPAAISNQITEDNAHDIKASIVVEAANGPTTPEATRILTERGILLVPDVLASAGGVTVSYFEWVQNNQGYYWSEEEVNEKLREKLEAAFDTIYELSQNRKIDMRLAAYIIGIKRTAEAARYRGWA
>CP030138.1|QAZ58896.1|975982_977173_+|Ornithine-aminotransferase-2
MTKSEKIIELTNHYGAHNYLPLPIVISEAEGVWVKDPEGNKYMDMLSAYSAVNQGHRHPKIIQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWAYDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKAAINENTAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKLFATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIAALDVIVDEDLPGRSLELGDYFKEQLKQIDHPSIKEVRGRGLFIGVELNESARPYCEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ
>CP030138.1|QAZ58895.1|974547_975675_+|NADH-dependent-flavin-oxidoreductase
MKSKYEPLFDKVELPNGVELRNRFVLAPLTHISSNDDGTISDVELPYIEKRSQDVGITINAASNVSDVGKAFPGQPSIAHDSNIEGLKRLATAMKKNGAKALVQIHHGGAQALPELTPDGDVVAPSPISLKSFGQKQEHSAREMTNEEIEQAIKDFGEATRRAIEAGFDGVEIHGANHYLIHQFVSPYYNRRNDVWANQYKFPVAVIEEVLKAKEAYGNKDFIVGYRLSPEEAESPGITMEITEELVNKISHMPIDYIHVSMMDTHATTREGKYAGQERLPLIHKWINGRMPLIGIGSIFTADEALDAVENVGVDLVAIGRELLLDYQFVEKIKDGREDEIINYFDPEREDNHHLTPNLWHQFNEGFYPLPRKDK
>CP030138.1|QAZ58894.1|973808_974186_+|S1-RNA-binding-domain-containing-protein
MNNYKIGQHIKVRVTGIQPYGAFVETPNHTEGLIHISEIMDDYVHNLKKFLSEGQIVKAKILSIDDEGKLNLSLKDNDYFKNYERKKEKQSVLDEIRETEKYGFQTLKERLPIWIKQSKRAIRND
>CP030138.1|QAZ58893.1|972799_973393_+|peptidylprolyl-isomerase
MANYPQLNKEVQQGEIKVVMHTNKGDMTFKLFPNIAPKTVENFVTHAKNGYYDGITFHRVINDFMIQGGDPTATGMGGESIYGGAFEDEFSLNAFNLYGALSMANSGPNTNGSQFFIVQMKEVPQNMLSQLADGGWPQPIVDAYGEKGGTPWLDQKHTVFGQIIDGETTLEDIANTKVGPQDKPLHDVVIESIDVEE
>CP030138.1|QAZ58892.1|972352_972736_-|kinase
MKLYRFSHKTGSYGVTIVEENGDDVLVKVEQVIKHPKQGDLHNPTETEGVFFHDRKALSHFEKRYTKRSQLRDFNVDVLRYEDSLQQAITDLETKLKAQQTKHAEMSLASLARLKEDYSLQYKENFK
>CP030138.1|QAZ58891.1|969816_972222_-|Na+/H+-antiporter-subunit-A
MSLLHIAVILPLIFALIIPILYRFFKRIHLGWFVLPVPIVIFIYMLTLIKTTMSGNTVMKTLNWMPHFGMNFDLYLDGLGLLFSLLISGIGSLVVLYSIGYLSKSEQLGNFYCYLLLFMGAMLGVVLSDNVIILYLFWELTSFSSFLLISFWRERQASIYGAQKSLIITVFGGLSLLGGIILLAIPTQSFSIQYMIQHASEIQNSPFFIFAMILIMIGAFTKSAQFPFYIWLPDAMEAPTPVSAYLHSATMVKAGLYLIARMTPIFAASQGWVWTVTLVGLITLFWASLNATKQQDLKGILAFSTVSQLGMIMAMLGIGAISYHYQGDDSKIYAAAFTAAIFHLINHATFKGALFMITGAVDHSTGTRDVKKLGGLLTIMPISFTITVITALSMAGVPPFNGFLSKESFLETTFTASQANLFSVDTLGYLFPIIGIVGSVFTFVYSIKFIMHIFFGQYKPEQLPKKAHEVSILMLLSPAILATLVIVFGLFPGILTNSIIEPATSSINHTVIDDVEFHMFHGLTPAFLSTLVIYILGILLIVTFSYWVKLLQRQPGKLTFNYWYNRSANVIPNYSEKMTNSYVTDYSRNNLVIIFGALILLTFVTIFSVPFNINFKDVSPIRIFEVCIVILLLSAAFLILFAKSRLFSIIMLSAVGYAVSVLFIFFKAPDLALTQFVVESISTALFLLCFYHLPNLNRYNEKRSFQLTNTLIAGGVGLSVIIIGLIAYGNRHFESISKFYQEHVYDLAHGKNMVNVILVDFRGMDTLFESSVLGIAGLAVYTMIKLRKKRQTQGNEVKNHE
>CP030138.1|QAZ58890.1|969395_969824_-|Na+/H+-antiporter-subunit-B
MNRQQNDLILQFAAVIIFFMVMVFGFSLFLAGHYTPGGGFVGGLLFASSLVIITIAFDIETMRKIFPLDFKILIGIGLVFCIATPIASWFLGKNFFTHVTFDIPLFILEPVHMTTAVFFDFGVLCAVVGTVMTIIISIGENE
>CP030138.1|QAZ60931.1|969054_969384_-|Na(+)/H(+)-antiporter-subunit-C
MIFVSGILTAISVYLVLSKSLIRIVMGTTLLTHAANLFLITMGGLKHGTVPIYEANVKSYVDPIPQALILTAIVIAFATTAFFLVLAFRTYKELGTDNVESMKGVPEDD
>CP030138.1|QAZ58889.1|967565_969062_-|Na+/H+-antiporter-subunit-D
MIESNMLVLTLVIPVITAILLVFIGKRPIIKRYVALGGTLLTLVAAIINLANVVKHGPIRVELGSWKAPYSIVFVLDIFSALLIITSIIITAIVILYSYQTIGNERERYYYYFSVLFMLIGIIGAFTTGDIFNLFVFFEVFLMSSYFLLVIGSTKIQLQETIKYVLVNVVSSSFFVMGVAILYSVVGTLNLADISNKLANLSAHDSGLVNIVFILFIFVFATKAGVFPMFVWLPSAYYAPPIPIIAFFGALLTKVGVYAIARTLSLFFSDNVSFSHYVILFLALLTIIFGCVGAVAYANIKKIILYNVMIAVGVILVGVAMMTESGMIGAIYYTLHDMLVKLALFLLIGIMIKITGTADLRQFGGLIKRYPVLGWSFFIAALSLAGIPPLSGFYGKFFIVQSTFERGFYLSGVIVLLSSLVVLYSVIRIFLQGFFGQPKGYDLNNKVDVKYLITIAIVAVVITVLYGLSADYLYPMVKAGAETFYNPSTYVKAVLGGK
>CP030138.1|QAZ58899.1|979028_979958_-|glycerophosphodiester-phosphodiesterase
MTNSSKSFTKFMAASAVFTMGFLSVPTAGAEQTNQIANKPQAIQWHTNLTNERFTTIAHRGASGYAPEHTFQAYDKSHNELKASYIEIDLQRTKDGHLVAMHDETVNRTTNGHGKVEDYTLDELKQLDAGSWFNKKYPKYARASYKNAKVPTLDEILERYGPNANYYIETKSPDVYPGMEEQLLASLKKHHLLNNNKLKNGHVMIQSFSDESLKKIHRQNKHVPLVKLVDKGELQQFNDQRLKEIRSYAIGLGPDYTDLTEQNTHHLKDLGFIVHPYTVNEKADMLRLNKYGVDGVFTNFADKYKEVIK
>CP030138.1|QAZ58900.1|980199_981579_-|argininosuccinate-lyase
MSNKAWGGRFEVQPEEWVDDFNASITFDQTLIDQDIEGSIAHATMLANQGIISQQDSEQIIQGLKSIQHDYHQDQIQFSASLEDIHLNIEHELIKRIGDAGGKLHTGRSRNDQVATDMHLYTKKQVQDIIALIKSLQSVIVDIASNNVDTIMPGYTHLQRAQPISFAHHIMTYFWMLQRDQQRFEDSLKRIDINPLGAAALSGTTYPIDRHETTALLNFGSLYENSLDAVSDRDYIIETLHNISLTMVHLSRFAEEIIFWSTDEAKFITLSDAFSTGSSIMPQKKNPDMAELIRGKVGRTTGHLMSMLMTLKGLPLAYNKDMQEDKEGLFDAVHTIKGSLRIFEGMIQTMTINKERLNQTVKEDFSNATELADYLVTKNIPFRTAHEIVGKIVLECIQQGHYLLDVPLATYQQHHSSIDADIYDYLQPENCLKRRQSYGSTGQSSVKQQLDVAKQLLSQ
>CP030138.1|QAZ58901.1|981568_982774_-|argininosuccinate-synthase
MKEKIVLAYSGGLDTSVAVQWLIDKGYDVVACCLDVGEGKDLDIVYKKALDMGAVECHIIDATKEFSDEYVSYAIKGNLMYENAYPLVSALSRPLIAKKLVEIAEKTNSVGIAHGCTGKGNDQVRFEVAIKALNPSLKAFAPVREWAWSREEEIDYAIKHNIPVSINHDSPYSIDQNLWGRANECGILEDPYAAPPEDAFDLTNALEETPDTADEIILTFDKGIPVQIDGKTYELDDLILTLNALAGKHGIGRIDHVENRLVGIKSREIYEAPAAEVILKAHKALETITLTKDVAHFKPIIEKQFAEQLYNGLWFSPLTDSLKLFIDSTQQYVSGDVRIKLFKGNAIVNGRKSPYTLYDEKLATYTKEDAFNQDAAVGFIDIYGLPTQVNAMLHGGYSNEQ
>CP030138.1|QAZ58902.1|983124_984456_+|glucose-6-phosphate-isomerase
MTHIQLNFSKTLEFFGEHELKQQQEIVKSIHKTIHEGTGAGSDFLGWVDLPVDYDKEEFSRIVEASKRIKENSDVLVVIGIGGSYLGARAAIEMLTSSFRNSNEYPEIVFVGNHLSSTYTKELVDYLADKDFSVNVISKSGTTTEPAVAFRLFKQLVEERYGKEEAQKRIFATTDKEKGALKQLATNEGYETFIVPDDVGGRYSVLTAVGLLPIATAGINIEAMMIGAAKAREELSSDKLEENIAYQYATIRNILYAKGYTTEMLINYEPSMQYFNEWWKQLFGESEGKDFKGIYPSSANYTTDLHSLGQYVQEGRRFLFETVVKVNHPKYDITIEKDSDDLDGLNYLAGKTIDEVNTKAFEGTLLAHTDGGVPNMVVNIPQLDEETFGYVVYFFELACAMSGYQLGVNPFNQPGVEAYKQNMFALLGKPGFEDLKKELEERL
>CP030138.1|QAZ58903.1|984780_985356_+|TVP38/TMEM64-family-protein
MSFHQVEEWFEIFRQFGYLPGFILLYIRAIIPVFPLALYILINIQAYGPILGILISWLGLISGTFTVYLICKRLVNTERMQRIKQRTAVQRLISFIDRQGLIPLFILLCFPFTPNTLINFVASLSHIRPKYYFIVLASSKLVSTIILGYLGKEITTILTHPLRGILMLVVLVVFWIVGKKLEQHFMGSKKE
>CP030138.1|QAZ58904.1|985360_985885_+|signal-peptidase-I
MKKVVKYLISLILAIIIVLFVQTFVIVGHVIPNNDMSPTLNKGDRVIVNKIKVTFNQLNNGDIITYRRGNEIYTSRIIAKPGQSMAFRQGQLYRDDRPVDASYAKNRKIKDFSLRNFKELDGDIIPPNNFVVLNDQDNNKHDSRQFGLIDKKDIIGNVSLRYYPFSKWTVQFKS
>CP030138.1|QAZ58905.1|985900_986476_+|signal-peptidase-IB
MKKEILEWIISIAVAFVILFIVGKFIVTPYTIKGESMDPTLKDGERVAVNIVGYKTGGLEKGNVVVFHANKNDDYVKRVIGVPGDKVEYKNDTLYVNGKKQDEPYLNYNLKHKQGDYITGTFQVKDLPNANPKSNVIPKGKYLVLGDNREVSKDSRAFGLIDEDQIVGKVSFRFWPFSEFKHNFNPENTKN
>CP030138.1|QAZ58906.1|986635_990112_+|ATP-dependent-helicase/deoxyribonuclease-subunit-B
MTLHAYLGRAGTGKSTKMLTEIKQKMKADPLGDPIILIAPTQSTFQLEQAFVNDPELNGSLRTEVLHFERLSHRIFQEVGSYSEQKLSKAATEMMIYNIVQEQQKYLKLYQSQAKYYGFSEKLTEQIQDFKKYAVTPEHLEHFIADKNMQTRTKNKLEDIALIYREFEQRIQNEFITGEDSLQYFIDCMPKSEWLKRADIYIDGFHNFSTIEYLIIKGLIKYAKSVTIILTTDGNHDQFSLFRKPSEVLRHIEEIANELNISIERQYFNQLYRFNNQDLKHLEQEFDALQINRVACQGHINILESATMREEINEIARRIIVDIRDKQLRYQDIAILYRDESYAYLFDSILPLYNIPYNIDTKRSMTHHPVMEMIRSLIEVIQSNWQVNPMLRLLKTDVLTASYLKSAYLVDLLENFVLERGIYGKRWLDDELFNVEHFSKMGRKAHKLTEDERNTFEQVVKLKKDVIDKILHFEKQMSQAETVKDFATAFYESMEYFELPNQLMTERDELDLNGNHEKAEEIDQIWNGLIQILDDLVLVFGDEPMSMERFLEVFDIGLEQLEFVMIPQTLDQVSIGTMDLAKVDNKQHVYLVGMNDGTMPQPVTASSLITDEEKKYFEQQANVELSPTSDILQMDEAFVCYVAMTRAKGDVTFSYSLMGSSGDDKEISPFLNQIQSLFNQLEITNIPQYHEVNPLSLMQHAKQTKITLFEALRAWLYDEIVADSWLDAYQVIRDSDHLNQGLDYLMSALTFDNETVKLGETLSKDLYGKEINASVSRFEGYQQCPFKHYASHGLKLNERTKYELQNFDLGDIFHSVLKYISERINGDFKQLDLKKIRQLTNEALEEILPKVQFNLLNSSAYYRYLSRRIGAIVETTLSALKYQGTYSKFMPKHFETSFRRKPRTNDELIAQTLTTTQGIPINIRGQIDRIDTYTKNDTSFVNIIDYKSSEGSATLDLTKVYYGMQMQMMTYMDIVLQNKQRLGLTDIVKPGGLLYFHVHEPRIKFKSWSDIDEDKLEQDLIKKFKLSGLVNADQTVIDALDIRLEPKFTSDIVPVGLNKDGSLSKRGSQVADEATIYKFIQHNKENFIETASNIMDGHTEVAPLKYKQKLPCAFCSYQSVCHVDGMIDSKRYRTVDETINPIEAIQNININDEFGGEQ
>CP030138.1|QAZ58907.1|990112_993766_+|ATP-dependent-helicase/nuclease-subunit-A
MTIPEKPQGVIWTDAQWQSIYATGQDVLVAAAAGSGKTAVLVERIIQKILRDGIDVDRLLVVTFTNLSAREMKHRVDQRIQEASIADPANAHLKNQRIKIHQAQISTLHSFCLKLIQQHYDVLNIDPNFRTSSEAENILLLEQTIDEVIEQHYDILDPAFIELTEQLSSDRSDDQFRMIIKQLYFFSVANPNPTNWLDQLVTPYEEEAQQAQLIQLLTDLSKVFITAAYDALNKAYDLFSMMDSVDKHLAVIEDERRLMGRVLEGGFIDIPYLTGHEFGARLPNVTAKIKEANEMMVDALEDAKLQYKKYKSLIDKVKSDYFSREADDLKADMQQLAPRVKYLARIVKDVMSEFNRKKRSKNILDFSDYEHFALQILTNEDGSPSEIAESYRQHFQEILVDEYQDTNRVQEKILSCIKTGDEHNGNLFMVGDVKQSIYKFRQADPSLFIEKYQRFTIDGDGTGRRIDLSQNFRSRKEVLSTTNYIFKHMMDEQVGEVKYDEAAQLYYGAPYDESDHPVNLKVLVEADQEHSDLTGSEQEAHFIVEQVKDILEHQKVYDMKTGSYRSATYKDIVILERSFGQARNLQQAFKNEDIPFHVNSREGYFEQTEVRLVLSFLRAIDNPLQDIYLVGLMRSVIYQFKEDELAQIRILSPNDDYFYQSIVNYINDEAADAILVDKLKMFLSDIQSYQQYSKDHPVYQLIDKFYNDHYVIQYFSGLIGGRGRRANLYGLFNKAIEFENSSFRGLYQFIRFIDELIERGKDFGEENVVGPNDNVVRMMTIHSSKGLEFPFVIYSGLSKDFNKRDLKQPVILNQQFGLGMDYFDVDKEMAFPSLASVAYRAVAEKELVSEEMRLVYVALTRAKEQLYLIGRVKNDKSLLELEQLSISGEHIAVNERLTSPNPFHLIYSILSKHQSASIPDDLKFEKDIAQIEDSSRPNVNISIVYFEDVSTETILDNDEYRSVNQLETMQNGNEDVKAQIKHQLDYRYPYVNDTKKPSKQSVSELKRQYETEESGTSYERVRQYRIGFSTYERPKFLSEQGKRKANEIGTLMHTVMQHLPFKKERISEVELHQYIDGLIDKHIIEADAKKDIRMDEIMTFINSELYSIIAEAEQVYRELPFVVNQALVDQLPQGDEDVSIIQGMIDLIFVKDGVHYFVDYKTDAFNRRRGMTDEEIGTQLKNKYKIQMKYYQNTLQTILNKEVKGYLYFFKFGTLQL
>CP030138.1|QAZ58908.1|993931_994834_+|FAA-hydrolase-family-protein
MKFLSFKYNDKTSYGVKVKREDAVWDLTQVFADFAEGDFHPKTLLAGLQQNHTLDFQEQVRKAVVAAEDSGKAEDYKISFNDIEFLPPVTPPNNVIAFGRNYKDHANELNHEVEKLYVFTKAASSLTGDNATIPNHKDITDQLDYEGELGIVIGKSGEKIPKALALDYVYGYTIINDITDRKAQSEQDQAFLSKSLTGGCPMGPYIVTKDELPLPENVNIVTKVNNEIRQDGNTGEMILKIDELIEEISKYVALHPGDIIATGTPAGVGAGMQPPKFLQPGDEVKVTIDNIGTLTTYIAK

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Crispr_ID: CP030138_7

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030138_7

1112350-1112437

Orphan

Consensus_repeat	Method
CCCCTAACAACTAAAAGTTGTAAGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030138_7

>merge|CP030138|7|1112350-1112437|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGGAAGGAGAGGGATACATGCGCCGAGCACATGCATAAAATCCCCTAACAACTAAAAGTTGTAAGG

>CP030138|7|6|1112350-1112437|CRISPRCasFinder
CCCCTAACAACTAAAAGTTGTAAGG	AAGGAGAGGGATACATGCGCCGAGCACATGCATAAAAT
CCCCTAACAACTAAAAGTTGTAAGG

Protein	Signature genes	Signature genes Name	Protein_function
CP030138.1\|QAZ59014.1\|1105480_1106047_+\|phosphoribosylglycinamide-formyltransferase	unknown	unknown	gnl\|CDD\|223376
CP030138.1\|QAZ60934.1\|1114048_1114252_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59013.1\|1104449_1105478_+\|phosphoribosylformylglycinamidine-cyclo-ligase	unknown	unknown	gnl\|CDD\|235439
CP030138.1\|QAZ59024.1\|1115678_1116221_+\|DUF697-domain-containing-protein	unknown	unknown	gnl\|CDD\|368297
CP030138.1\|QAZ59023.1\|1114452_1115625_+\|class-I-SAM-dependent-rRNA-methyltransferase	unknown	unknown	gnl\|CDD\|224017
CP030138.1\|QAZ59012.1\|1102972_1104457_+\|amidophosphoribosyltransferase	unknown	unknown	gnl\|CDD\|235984
CP030138.1\|QAZ59018.1\|1109872_1111273_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|213192
CP030138.1\|QAZ59011.1\|1100804_1102994_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	unknown	unknown	gnl\|CDD\|234921
CP030138.1\|QAZ59028.1\|1119029_1120391_+\|cytochrome-ubiquinol-oxidase-subunit-I	unknown	unknown	gnl\|CDD\|376587
CP030138.1\|QAZ59027.1\|1118598_1118832_-\|glutaredoxin-family-protein	unknown	unknown	gnl\|CDD\|239274
CP030138.1\|QAZ59019.1\|1111287_1111863_-\|thiamine-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|227065
CP030138.1\|QAZ59021.1\|1112446_1112581_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59015.1\|1106061_1107540_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/inosine-monophosphate-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
CP030138.1\|QAZ59029.1\|1120387_1121407_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	unknown	unknown	gnl\|CDD\|224213
CP030138.1\|QAZ59025.1\|1116374_1116641_+\|phosphocarrier-protein-HPr	unknown	unknown	gnl\|CDD\|237503
CP030138.1\|QAZ59020.1\|1112226_1112346_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59016.1\|1107561_1108809_+\|phosphoribosylamine--glycine-ligase	unknown	unknown	gnl\|CDD\|237507
CP030138.1\|QAZ59026.1\|1116643_1118362_+\|phosphoenolpyruvate--protein-phosphotransferase	unknown	unknown	gnl\|CDD\|224006
CP030138.1\|QAZ59017.1\|1109073_1109880_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	unknown	unknown	gnl\|CDD\|223692
CP030138.1\|QAZ59022.1\|1112732_1114028_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP030138.1\|QAZ59014.1\|1105480_1106047_+\|phosphoribosylglycinamide-formyltransferase	gnl\|CDD\|223376	COG0299, PurN, Folate-dependent phosphoribosylglycinamide formyltransferase PurN [Nucleotide transport and metabolism].	7.23817e-92
CP030138.1\|QAZ59013.1\|1104449_1105478_+\|phosphoribosylformylglycinamidine-cyclo-ligase	gnl\|CDD\|235439	PRK05385, PRK05385, phosphoribosylaminoimidazole synthetase; Provisional.	0
CP030138.1\|QAZ59024.1\|1115678_1116221_+\|DUF697-domain-containing-protein	gnl\|CDD\|368297	pfam05128, DUF697, Domain of unknown function (DUF697). Family of bacterial hypothetical proteins that is sometimes associated with GTPase domains.	0.00779365
CP030138.1\|QAZ59011.1\|1100804_1102994_+\|phosphoribosylformylglycinamidine-synthase-subunit-PurL	gnl\|CDD\|234921	PRK01213, PRK01213, phosphoribosylformylglycinamidine synthase subunit PurL.	0
CP030138.1\|QAZ59012.1\|1102972_1104457_+\|amidophosphoribosyltransferase	gnl\|CDD\|235984	PRK07272, PRK07272, amidophosphoribosyltransferase; Provisional.	0
CP030138.1\|QAZ59018.1\|1109872_1111273_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|213192	cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system. Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.	1.67975e-64
CP030138.1\|QAZ59015.1\|1106061_1107540_+\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/inosine-monophosphate-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
CP030138.1\|QAZ59028.1\|1119029_1120391_+\|cytochrome-ubiquinol-oxidase-subunit-I	gnl\|CDD\|376587	pfam01654, Cyt_bd_oxida_I, Cytochrome bd terminal oxidase subunit I. This family are the alternative oxidases found in many bacteria which oxidize ubiquinol and reduce oxygen as part of the electron transport chain. This family is the subunit I of the oxidase E. coli has two copies of the oxidase, bo and bd', both of which are represented here In some nitrogen fixing bacteria, e.g. Klebsiella pneumoniae this oxidase is responsible for removing oxygen in microaerobic conditions, making the oxidase required for nitrogen fixation. This subunit binds a single b-haem, through ligands at His186 and Met393 (using SW:P11026 numbering). In addition His19 is a ligand for the haem b found in subunit II.	2.48829e-165
CP030138.1\|QAZ59027.1\|1118598_1118832_-\|glutaredoxin-family-protein	gnl\|CDD\|239274	cd02976, NrdH, NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, could be a mechanism for regulating the oxidation state of the protein.	5.00495e-16
CP030138.1\|QAZ59019.1\|1111287_1111863_-\|thiamine-ABC-transporter-permease	gnl\|CDD\|227065	COG4721, COG4721, ABC-type cobalt transport system, predicted permease component [Inorganic ion transport and metabolism].	4.34592e-70
CP030138.1\|QAZ59026.1\|1116643_1118362_+\|phosphoenolpyruvate--protein-phosphotransferase	gnl\|CDD\|224006	COG1080, PtsA, Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism].	0
CP030138.1\|QAZ59023.1\|1114452_1115625_+\|class-I-SAM-dependent-rRNA-methyltransferase	gnl\|CDD\|224017	COG1092, COG1092, Predicted SAM-dependent methyltransferases [General function prediction only].	5.6543e-145
CP030138.1\|QAZ59029.1\|1120387_1121407_+\|cytochrome-d-ubiquinol-oxidase-subunit-II	gnl\|CDD\|224213	COG1294, AppB, Cytochrome bd-type quinol oxidase, subunit 2 [Energy production and conversion].	6.42118e-76
CP030138.1\|QAZ59025.1\|1116374_1116641_+\|phosphocarrier-protein-HPr	gnl\|CDD\|237503	PRK13780, PRK13780, phosphocarrier protein HPr; Provisional.	2.44795e-51
CP030138.1\|QAZ59016.1\|1107561_1108809_+\|phosphoribosylamine--glycine-ligase	gnl\|CDD\|237507	PRK13790, PRK13790, phosphoribosylamine--glycine ligase; Provisional.	0
CP030138.1\|QAZ59017.1\|1109073_1109880_-\|energy-coupling-factor-transporter-transmembrane-protein-EcfT	gnl\|CDD\|223692	COG0619, CbiQ, ABC-type cobalt transport system, permease component CbiQ and related transporters [Inorganic ion transport and metabolism].	7.39205e-29

>CP030138.1|QAZ59020.1|1112226_1112346_+|hypothetical-protein
MKRDTYQSYLFNNSEEPVHNGLRIIVYKEEEGYMRRAHA
>CP030138.1|QAZ59019.1|1111287_1111863_-|thiamine-ABC-transporter-permease
MSKGLKLSEILVTVLISVVFAVIYNLWWFVYNGVQATGLHLEQLTNGVWFMAAIVCYLIIPKPGIALLAEFAAGAGETIIMGRFDIPTIVYAFIQGLACELVFAIFKYQSRSVMVAMLAGFCTAIAAFPIDYFYGYLNEVAGWNLTLFIVFRLISGAVVAGVLSYLLVKALDKTGVTKLFRPAAKEDYDNL
>CP030138.1|QAZ59018.1|1109872_1111273_-|ABC-transporter-ATP-binding-protein
MLKVSDLRLKYPSGQRKIFDHLNITIQDKEKVLLLGPSGCGKSTLLNVLSGIVPNLIELPMKYDELIVDPLSGVIFQDPDSQFCMPKVYEELAFVLENRQLPREDMDALIINALNMVNLNVTPETYIKDLSGGMKQKLAIVETILQQSKTLFLDEPTAMLDVQATEDLWTKLIELWEDQTVVIVEHKVKHIWNHVDRVILMDYNGNIIADECPEIILQKYVHLLSEYGVWHPRAWEFAPSRVDFPTTNSHLLQFKNGRIIRGKSTLLSFSDLEIGLGEWITITGANGSGKTTLLESIMQLIKYQGDVYFENQRLTKIKHAAKHMYLVYQNPELQFITNSVYDEINIHFNHLSKDQSDDETIQLLKLLDLQNVKDQHPYELSIGQKRRLSVATALSSKADIIFLDEPTFGLDSHNTFQLIKLFQKRINLGQSIVMVTHDDEIIERYPSRRLKISDGALLDCDGDTNV
>CP030138.1|QAZ59017.1|1109073_1109880_-|energy-coupling-factor-transporter-transmembrane-protein-EcfT
MYEQWKVRQSFVDDVNIITKLFLGIILFFFIIFVHNFDFMLYITILMLVFLLMFNGTQFKITAIFITISIGFALLSSLFMILYGNGSHTILKFGFIHITTESLVRGLHVSLRTIAISFFGILIALTSQVVMIFYSLMQHLKVKSKVAYAFMAAIRMIPLMISSLIQLRRSLKMRYQMIDAANYRGLKRFKHLIIPLLSQNIRKAHQLSVAMESKGFRDGPRTYYYNVPFSYKDIIFIIVLIAIITMAYYCSITLPITGIDDVRLGRVG
>CP030138.1|QAZ59016.1|1107561_1108809_+|phosphoribosylamine--glycine-ligase
MNVLVIGAGGREHALAYKLNQSNLVKQVFVIPGNEAMTPIAEVHTEISESDHQAILDFAKRQNVDWVVIGPEQPLIDGLADILRANGFKVFGPNKQAAQIEGSKLFAKKIMEKYNIPTADYKEVERKKDALTYIENCELPVVVKKDGLAAGKGVIIADTIEAARSAIEIMYGDEEEGTVVFETFLEGEEFSLMTFVNGDLAVPFDCIAQDHKRAFDHDEGPNTGGMGAYCPVPHISDDVLKLTNETIAQPIAKAMLNEGYQFFGVLYIGAILTKDGPKVIEFNARFGDPEAQVLLSRMESDLMQHIIDLDEGKRTEFKWKNESIVGVMLASKGYPDAYEKGHKVSGFDLNENYFVSGLKKQGDTFVTSGGRVILAIGKGDNVQDAQRDAYKKVSQIQSDHLFYRHDIANKALQLK
>CP030138.1|QAZ59015.1|1106061_1107540_+|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/inosine-monophosphate-cyclohydrolase
MKKAILSVSNKTGIVEFAKALTQLNYELYSTGGTKRILDEANVPVRSVSDLTHFPEIMDGRVKTLHPAVHGGILADRNKPQHLNELSEQHIDLIDMVVVNLYPFQQTVANPDVTMDEAIENIDIGGPTMLRAAAKNYKHVTTIVHPADYQEVLTRLRNDSLDESYRQSLMIKVFEHTAEYDEAIVRFFKGDKETLRYGENPQQSAYFVRTSNAKHTIAGAKQLHGKQLSYNNIKDADATLALVKKFDTPATVAVKHMNPCGVGIGDTIEQAFQHAYEADSQSIFGGIVALNRAVTPELAEQLHSIFLEVIIAPKFTDEALDILKQKKNVRLLEIDMTIDSNEEEFVSVSGGYLVQDKDNYVVPKEEMKVVTEVAPTDEQWEAMLLGWKVVPSVKSNAIILSNNKQTVGIGAGQMNRVGAAKIALERAIEINDHVALVSDGFFPMGDTVELAAQHGIKAIIQPGGSIKDQDSIDMANKHGIAMVVTGTRHFKH
>CP030138.1|QAZ59014.1|1105480_1106047_+|phosphoribosylglycinamide-formyltransferase
MVKIAIFASGSGSNFENIVEHVESGKLENIEVTALYTDHQNAFCIDRAKKHDIPVYINEPKQFDSKAAYEQHLVTLLNEDKVEWIILAGYMRLIGPDLLASFEGKILNIHPSLLPKYKGIDAIGQAYHSGDTITGSTVHYVDSGMDTGEIIEQRKCDIRPDDSKEQLEEKVKKLEYELYPSVIAKIVK
>CP030138.1|QAZ59013.1|1104449_1105478_+|phosphoribosylformylglycinamidine-cyclo-ligase
MSKAYEQSGVNIHAGYEAVERMSSHVKRTMRKEVIGGLGGFGATFDLSQLNMTAPVLVSGTDGVGTKLKLAIDYGKHDSIGIDAVAMCVNDILTTGAEPLYFLDYIATNKVVPEVIEQIVKGISDACVETNTALIGGETAEMGEMYHEGEYDVAGFAVGAVEKDDYVDGSEVKEGQVVIGLASSGIHSNGYSLVRKLINESGIDLASNFDNRPFIDVFLEPTKLYVKPVLALKKEVSIKAMNHITGGGFYENIPRALPAGYAARIDTTSFPTPKIFDWLQQQGNIDTNEMYNIFNMGIGYTVIVDEKDVSRALKILAEQNVEAYQIGHIVKNESTAIELLGV
>CP030138.1|QAZ59012.1|1102972_1104457_+|amidophosphoribosyltransferase
MFNYSGLNEECGVFGIWNHPEAAQLTYMGLHSLQHRGQEGAGIVVSDQNELKGERGLGLLTEAIKDDQMERLKGYQHAIGHVRYATSGNKGIENIQPFLYHFYDMSVGICHNGNLINAKSLRQNLEKQGAIFHSSSDTEVIMHLIRRSKAPTFEEALKESLRKVKGGFTFAILTKDALYGAVDPNAIRPLVVGKMKDGTYILASETCAIDVLGAEFVQDIHAGEYVVINDKGITVKSYTHHTTTAISAMEYIYFARPDSTIAGKNVHAVRKASGKKLAQESPVNADMVIGVPNSSLSAASGYAEEIGLPYEMGLVKNQYVARTFIQPTQELREQGVRVKLSAVKDIVDGKNIILVDDSIVRGTTIRRIVKMLKDSGANKVHVRIASPEFMFPSFYGIDVSTTAELISASKSPEEIKDYIGADSLAYLSVDGLIESIGLDYDAPYSGLCVESFTGDYPAGLYDYEANYKAHLSHRQKQYISKNKHFFDSEGNLNV
>CP030138.1|QAZ59011.1|1100804_1102994_+|phosphoribosylformylglycinamidine-synthase-subunit-PurL
MSKFIEPSVEEIKLEKVYQDMGLSDQEYEKVCDILGRQPNFTETGIFSVMWSEHCSYKHSKPFLKQFPTSGDHVLMGPGEGAGVVDIGDNQAVVFKVESHNHPSAIEPYQGAATGVGGIIRDIVSIGARPINLLNSLRFGELDNKQNQRLLKGVVKGIGGYGNCIGIPTTAGEIEFDERYDGNPLVNAMCVGVINHDMIQKGTAKGVGNSVIYVGLKTGRDGIHGATFASEELTEESESKRPSVQIGDPFVGKKLMEATLEAITFDELVGIQDMGAAGLTSSSSEMAAKGGSGLHLRLEQVPTREPGISPYEMMLSETQERMLLVVEKGTEQKFLDLFDKHELDSAVIGEVTDTNRFVLTYDDEVYADIPVEPLADEAPVYILEGEEKDYNTSKNDYTHIDVKDTFFKLLKHPTIASKHYLYDQYDQQVGANTIIKPGLQASVVRVEGTNKAIASTIDGEARYVYNNPYEGGKMVVAEAYRNLIAVGATPLAMTDCLNYGSPEKKEIYQQLIDSTKGMAEACDILKTPVVSGNVSLYNETKGTSIFPTPVVGMVGLIENVNYLNDFEPQVGDKLYLIGDTKDDFGGSQLEKLIYGKVNHEFESLDLSSEVEKGESIKTAIREGLLSHVQTVGKGGLLITLAKLSAHYGLGLKSSIDITNAQLFSETQGRYVVSVKSGKTLNIDNAIEIGLLTDSDNFKVTTPYTEISENVSDIKQIWEGAIAQCLTTQD
>CP030138.1|QAZ59021.1|1112446_1112581_-|hypothetical-protein
MSNENQNKKAAEKAKEVEEKLKDKKEEKTEDINQTKQDIQDTLN
>CP030138.1|QAZ59022.1|1112732_1114028_+|hypothetical-protein
MSFLRKHAEIIFSYLIGIVSLFTGLIILINLPLIKQLNGGKKVDTHVHNVWEFLNAFFSEIIKVMSRFIGNFPIVSAIVIIIFGILVMLIGHTLLRTIKYDYDISIFFLVIGIMYFIITLILMTQVYGFFAVIFIIPFTIHIGYIVYKDELNQENVKNHFMWIIVSYGISYLITQIALYGRIDANEIESIDILSVNAFFIIMWLLGQMAIWNFLFLRRALPLTKQELGEEEPELSRTSKGNVTNQTKIHLKQLQDKTTEYARKTRRSVDLDKIRAKRDKFKKKVNDIIDIQEDDIPDWMRKPKWVKPMYVELFCGVVIFLFTFLEFNNRNALFVSGDWKLSQTQYVIEWVTLLILLFIIIAYIATTLTFHLKGKFYYLQLFMGSILFFKLLTEFINIMIHGLLLSVFITPTLLLMLLAIIISYSLQLRERP
>CP030138.1|QAZ60934.1|1114048_1114252_-|hypothetical-protein
MILQMDNFSTILFALKLCIQFSILNSHHLNQSNLVTKKVLSINFIDLYLSKLEIYLTYSVHIKMFNR
>CP030138.1|QAZ59023.1|1114452_1115625_+|class-I-SAM-dependent-rRNA-methyltransferase
MKIATLNKGKETKYFNGYPLIEEEDIYSQDHLKEGDIFQIVTDKSQYVATAYVGRQHKGLGWVLTYDKAQQINTAFFVKLFNTALAERDYYFNIDGTNAFRLFNAEGDGVGGLTIDNYDGHLLIQWYSKGIYKFKYAILEAVRKVFDYKSIYEKVRFKDSEYSGGFVEGDAPEFPIVIEENFTFYNVDLEDGLMTGIFLDQKEVRKKLRDQYAKERHVLNLFSYTGAFSAIAASEASSTTSVDLANRSRSLTEENFGLNAIDPKSQYIYVMDTFDFYKYAARHGHSYDTIVIDPPSFARNKKRTFSVQKDYDKLINGALNILSSEGTLLLCTNASVYPLKQFKNTIKKTLEESGVDYELTEVMGLPKDFKTHPHYKPSKYLKAVFVNIRH
>CP030138.1|QAZ59024.1|1115678_1116221_+|DUF697-domain-containing-protein
MGFKNNLTSNLTNKIGNSVFKIENVDGKGAMPTTIQELRERRQRAEAIVKRKSLMSSTMSVVPIPGLDFGVDLKLMKDIIEDVNKIYGLDHKQVNSLGDDVKERIMSAAAIQGSQFIGKRISNAFLKIVIRDVAKRTAAKQTKWFPVVGQAVSASISYYFMNKIGKDHIQKCENVIKNVM
>CP030138.1|QAZ59025.1|1116374_1116641_+|phosphocarrier-protein-HPr
MEQNSYVIIDETGIHARPATMLVQTASKFDSDIQLEYNGKKVNLKSIMGVMSLGVGKDAEITIYADGSDESDAIQAISDVLSKEGLTK
>CP030138.1|QAZ59026.1|1116643_1118362_+|phosphoenolpyruvate--protein-phosphotransferase
MSKLIKGIAASDGVAIAKAYLLVEPDLTFDKNEKVTDVEGEVAKFNSAIEASKVELTKIRNNAEVQLGADKAAIFDAHLLVLDDPELIQPIQDKIKNENANAATALTDVTTQFVTIFESMDNEYMKERAADIRDVSKRVLSHILGVELPNPSMIDESVVIVGNDLTPSDTAQLNKEFVQGFATNIGGRTSHSAIMSRSLEIPAIVGTKSITQEVKQGDMIIVDGLNGDVIVNPTEDELIAYQDKRERYFADKKELQKLRDADTVTVDGVHAELAANIGTPNDLPGVIENGAQGIGLYRTEFLYMGRDQMPTEEEQFEAYKEVLEAMGGKRVVVRTLDIGGDKELSYLNLPEEMNPFLGYRAIRLCLAQQDIFRPQLRALLRASVYGKLNIMFPMVATINEFREAKAILLEEKENLKNEGHDISDDIELGIMVEIPATAALADVFAKEVDFFSIGTNDLIQYTLAADRMSERVSYLYQPYNPSILRLVKQVIEASHKEGKWTGMCGEMAGDETAIPLLLGLGLDEFSMSATSILKARRQINGLSKNEMTELANRAVDCATQEEVIELVNNYVK
>CP030138.1|QAZ59027.1|1118598_1118832_-|glutaredoxin-family-protein
MSEIIVYTQNDCPPCTFVKNYLNEHHIDFEERNINNQQYRNEMIDFDAFSTPFILLNGNPMYHVDLDEINKVLNIQD
>CP030138.1|QAZ59028.1|1119029_1120391_+|cytochrome-ubiquinol-oxidase-subunit-I
MDTVEISRFLTAMTLAVHIIFATIGVGMPLMFAIAEFLGIRKNDLQYIAMAKRWAKAYTITVAVGVVTGTIIGLQLSLIWPTFMEMGGHVIALPLFMETFAFFFEAIFLSIYLYTWDRFKNKWTHFLISIPVIIGGSFSAFFITSVNSFMNTPAGFELKNGKMVNVQPIEAMFNPSFIVRSFHVITTAGMTMAFVIASIAAFKLLRNRQPKDTVYHKKALKMSMIVGFFSTLLSMLAGDLSAKFLHKFQPEKLAAYEWHFDTSSHAKLLLFGVLDEKTQQVKGAIELPGLLSFLADNSVKTKVQGLNDFPKSLHPPMIVHYFFDLMVTMGILCFVISGVYVLTLMFKKLRKFSTHKWMLYGILLTGPASMLAIEFGWFLTEMGRQPWIVRGYMRVAEAATQAGGITFVTILFGILYIILMYTCAYVLIRMFKNKPAYEDVNRLAKKQGGEIEK
>CP030138.1|QAZ59029.1|1120387_1121407_+|cytochrome-d-ubiquinol-oxidase-subunit-II
MIYAFIGITVLWLFLFCYIIIASIDFGAGFFALHSKLTGDEKKINHLISRYLNPVWEVTNVFFVFFFVGFVGFFPESIKYLGTVLLIPGSIALIMISLRNSFYAFENYGQDTKLAWMIMYGVSGLLIPASLSTALTITEGGYINVRNNVIDLDWVQLLLSPFAWSVVFLAIISVLYISSGFLTYYAKKANDEPAYNLTRQWHIFLGPPMIIICLFVFLSLRIQNSEHFYSAVFDYWWMFGISFLFFALASLLTFFKKKHGLAFVFVILQMMFAFFGYGISKLPYLLYPFVKITDAYVNPEMGWTLVIVFILGLLLLLPSLILLLRLFVFDKEYVEGKKS

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Crispr_ID: CP030138_8

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030138_8

1192689-1192990

Orphan

Consensus_repeat	Method
TGCAAGTTGGNGNGGNNCCNA	CRT
TCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATAGGAAC	PILER-CR

5 spacers

The CRISPR arrays of CP030138_8

>merge|CP030138|8|1192689-1192990|CRT,PILER-CR
TGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTTCAACAGACAATGCAAGTTGGGGTGGGGCCCAACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATCACCAATTCCAACAAACAATGCAAGTTGGCGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATGTGCAAGTTGGCGGGGCCCCAACATAGAGAAATTGGAACCCCAATTTCTACAGACAATGCAAGTTGGGGTAGGACATC

>CP030138|8|2|1192689-1192990|CRT
TGCAAGTTGGCGGGGCCCCAA	CAGAGAGAAATAGGATCACCAATTTCAACAGACAA
TGCAAGTTGGGGTGGGGCCCA	ACACAGAAGCTGGCGAAAAGTCAGCATACAAAAATG
TGCAAGTTGGCGGGGCCCCAA	CAGAGAGAAATAGGATCACCAATTCCAACAAACAA
TGCAAGTTGGCGGGGCCCCAA	TATAGAAGCTGGCGAAAAGTCAGCTTACAAAAATG
TGCAAGTTGGCGGGGCCCCAA	CATAGAGAAATTGGAACCCCAATTTCTACAGACAA
TGCAAGTTGGGGTAGGACATC

>CP030138|8|1|1192786-1192951|PILER-CR
TCAGCATACAAAAATGTGCAAGTTGGCGGGGCCCCAACAGAGAGAAATAGGATC	ACCAATTCCAACAAACAA
TGCAAGTTGGCGGGGCCCCAATATAGAAGCTGGCGAAAAGTCAGCTTACAAAAA	TGTGCAAGTTGGC
GGGGCCCCAACATAGAGAAATTGGAAC

Protein	Signature genes	Signature genes Name	Protein_function
CP030138.1\|QAZ59103.1\|1189485_1189887_-\|FPRL1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
CP030138.1\|QAZ59111.1\|1196593_1196818_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59105.1\|1191323_1191821_+\|fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|289007
CP030138.1\|QAZ59097.1\|1186403_1187204_+\|glutamate-racemase	unknown	unknown	gnl\|CDD\|234851
CP030138.1\|QAZ59100.1\|1188426_1188594_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59107.1\|1193145_1193331_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59114.1\|1198962_1199688_-\|superantigen-like-protein-SSL14	unknown	unknown	gnl\|CDD\|171855
CP030138.1\|QAZ59108.1\|1193952_1194186_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59109.1\|1194750_1195923_+\|IS256-family-transposase-IS256	unknown	unknown	gnl\|CDD\|307151
CP030138.1\|QAZ59102.1\|1189433_1189526_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59106.1\|1191974_1192325_+\|fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|371594
CP030138.1\|QAZ59104.1\|1190558_1191065_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59110.1\|1196490_1196637_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59113.1\|1198142_1198868_-\|superantigen-like-protein-SSL13	unknown	unknown	gnl\|CDD\|106307
CP030138.1\|QAZ59101.1\|1188787_1189117_+\|fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|289007
CP030138.1\|QAZ59112.1\|1197318_1198035_-\|superantigen-like-protein-SSL12	unknown	unknown	gnl\|CDD\|171995
CP030138.1\|QAZ59115.1\|1200125_1201127_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
CP030138.1\|QAZ60935.1\|1193540_1193759_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59099.1\|1187795_1188299_+\|metallophosphoesterase	unknown	unknown	gnl\|CDD\|223695
CP030138.1\|QAZ59098.1\|1187215_1187803_+\|non-canonical-purine-NTP-pyrophosphatase	unknown	unknown	gnl\|CDD\|184835

Protein	Function_ID	Function_description	E-value
CP030138.1\|QAZ59103.1\|1189485_1189887_-\|FPRL1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	3.87075e-77
CP030138.1\|QAZ59105.1\|1191323_1191821_+\|fibrinogen-binding-protein	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	5.40265e-27
CP030138.1\|QAZ59097.1\|1186403_1187204_+\|glutamate-racemase	gnl\|CDD\|234851	PRK00865, PRK00865, glutamate racemase; Provisional.	2.38427e-134
CP030138.1\|QAZ59114.1\|1198962_1199688_-\|superantigen-like-protein-SSL14	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	8.18566e-161
CP030138.1\|QAZ59109.1\|1194750_1195923_+\|IS256-family-transposase-IS256	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	0
CP030138.1\|QAZ59106.1\|1191974_1192325_+\|fibrinogen-binding-protein	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48
CP030138.1\|QAZ59115.1\|1200125_1201127_+\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
CP030138.1\|QAZ59101.1\|1188787_1189117_+\|fibrinogen-binding-protein	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	4.63429e-22
CP030138.1\|QAZ59098.1\|1187215_1187803_+\|non-canonical-purine-NTP-pyrophosphatase	gnl\|CDD\|184835	PRK14822, PRK14822, XTP/dITP diphosphatase.	1.88157e-114
CP030138.1\|QAZ59113.1\|1198142_1198868_-\|superantigen-like-protein-SSL13	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	4.11802e-148
CP030138.1\|QAZ59099.1\|1187795_1188299_+\|metallophosphoesterase	gnl\|CDD\|223695	COG0622, COG0622, Predicted phosphoesterase [General function prediction only].	9.91823e-44
CP030138.1\|QAZ59112.1\|1197318_1198035_-\|superantigen-like-protein-SSL12	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	1.29441e-152

>CP030138.1|QAZ59106.1|1191974_1192325_+|fibrinogen-binding-protein
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>CP030138.1|QAZ59105.1|1191323_1191821_+|fibrinogen-binding-protein
MKNKLIAKSLLTLAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVK
>CP030138.1|QAZ59104.1|1190558_1191065_+|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>CP030138.1|QAZ59103.1|1189485_1189887_-|FPRL1-inhibitory-protein
MKKNITKTIIASTVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSITWY
>CP030138.1|QAZ59102.1|1189433_1189526_-|hypothetical-protein
MLKTVKSTRLLGIKKHTELNSCTPNVRKQC
>CP030138.1|QAZ59101.1|1188787_1189117_+|fibrinogen-binding-protein
MKKNFIGKSILSIAAISLTVSTFAGESHAQTKNVEAAKKYDQYQTNFKKQVNKKVVDAQKAVNFFKRTRTVATHRKAQRAVNLIHFQHSYEKKKLQRQIDLVLKYNTLK
>CP030138.1|QAZ59100.1|1188426_1188594_+|hypothetical-protein
MKRIVILENVIVDNPIWLNHVDYLVKSVLLKSIKLRFQEVKKFEILVKIMNRIHI
>CP030138.1|QAZ59099.1|1187795_1188299_+|metallophosphoesterase
MSKWIIVSDNHTESGVLYQIYEMHPDADVYLHLGDSEFAYDDTELSLFNRVKGNCDFYPEFENEAVAKYNDVKAFYTHGHLYQVNRTRDLLAEKGLELGCLFAFYGHTHVAKYEYINGVHVINPGSISQSRSSMEETYAEVIIDDQTLHGTINFKNRHHETISHTTF
>CP030138.1|QAZ59098.1|1187215_1187803_+|non-canonical-purine-NTP-pyrophosphatase
MKEIVIASNNQGKINDFKVIFPDYHVIGISELIPDFDVEETGSTFEENAILKSEAAAKALNKTVIADDSGLEVFALNGEPGIYSARYAGENKSDEANIEKLLNKLGNTTDRRAQFVCVISMSGPDMETKVFKGTVSGEIADGKYGENGFGYDPIFYVPKLDKTMAQLSKEQKGQISHRRNAINLLQAFLEGDKNV
>CP030138.1|QAZ59097.1|1186403_1187204_+|glutamate-racemase
MNKPIGVIDSGVGGLTVAKEIMRQLPNETIYYLGDIGRCPYGPRPGEQVKQYTVEIARKLMEFDIKMLVIACNTATAVALEYLQKTLSIPVIGVIEPGARTAIMTTRNQNVLVLGTEGTIKSEAYRTHIKRINPHVEVHGVACPGFVPLVEQMRYSDPTITSIVIHQTLKRWRNSESDTVILGCTHYPLLYKPIYDYFGGKKTVISSGLETAREVSALLTFSNEHASYTEHPDHRFFATGDPTHITNIIKEWLNLSVNVERISVND
>CP030138.1|QAZ59107.1|1193145_1193331_-|hypothetical-protein
MNKHINKKAAKLLEDYKKVQQRKSKETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>CP030138.1|QAZ60935.1|1193540_1193759_-|hypothetical-protein
MINFGLIIVPLLTTNDADFVWTSSSLIYMILLTSIILIVYIKTKDSLQLTIFILNIALIILYCAPLLFIYVF
>CP030138.1|QAZ59108.1|1193952_1194186_-|hypothetical-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>CP030138.1|QAZ59109.1|1194750_1195923_+|IS256-family-transposase-IS256
MTQVHFTLKSEEIQSIIEYSVKDDVSKNILTTVFNQLMENQRTEYIQAKEYERTENRQSQRNGYYERSFTTRVGTLELKVPRTRDGHFSPTVFERYQRNEKALMASMLEMYVSGVSTRKVSKIVEELCGKSVSKSFVSSLTEQLEPMVNEWQNRLLSEKNYPYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYLKERGLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNIFTTIPKKNSKSFREAVKGIFKFTDINLAREAKNRLIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
>CP030138.1|QAZ59110.1|1196490_1196637_+|hypothetical-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>CP030138.1|QAZ59111.1|1196593_1196818_+|hypothetical-protein
MLIQERGLKMTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>CP030138.1|QAZ59112.1|1197318_1198035_-|superantigen-like-protein-SSL12
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>CP030138.1|QAZ59113.1|1198142_1198868_-|superantigen-like-protein-SSL13
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAHYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>CP030138.1|QAZ59114.1|1198962_1199688_-|superantigen-like-protein-SSL14
MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>CP030138.1|QAZ59115.1|1200125_1201127_+|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVLESKASVVFQEAENRMHTIKAVMVATLGEF

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Crispr_ID: CP030138_9

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030138_9

1197058-1197143

Orphan

Consensus_repeat	Method
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP030138_9

>merge|CP030138|9|1197058-1197143|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGGCGGGGCCCCAACATAGAAGCTGGCGGAAAGTCAGCTTACAATAATGTGCAAGTTGG

>CP030138|9|7|1197058-1197143|CRISPRCasFinder
AAAGTCAGCTTACAATAATGTGCAAGTTGG	CGGGGCCCCAACATAGAAGCTGGCGG
AAAGTCAGCTTACAATAATGTGCAAGTTGG

Protein	Signature genes	Signature genes Name	Protein_function
CP030138.1\|QAZ59111.1\|1196593_1196818_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59103.1\|1189485_1189887_-\|FPRL1-inhibitory-protein	unknown	unknown	gnl\|CDD\|171849
CP030138.1\|QAZ59105.1\|1191323_1191821_+\|fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|289007
CP030138.1\|QAZ59116.1\|1201149_1202082_+\|carbamate-kinase-1	unknown	unknown	gnl\|CDD\|237071
CP030138.1\|QAZ59117.1\|1204117_1204345_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59118.1\|1204649_1205597_-\|permease	unknown	unknown	gnl\|CDD\|187765
CP030138.1\|QAZ59115.1\|1200125_1201127_+\|ornithine-carbamoyltransferase	unknown	unknown	gnl\|CDD\|235269
CP030138.1\|QAZ59107.1\|1193145_1193331_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59114.1\|1198962_1199688_-\|superantigen-like-protein-SSL14	unknown	unknown	gnl\|CDD\|171855
CP030138.1\|QAZ60936.1\|1202304_1203810_+\|YfcC-family-protein	unknown	unknown	gnl\|CDD\|224207
CP030138.1\|QAZ59108.1\|1193952_1194186_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59113.1\|1198142_1198868_-\|superantigen-like-protein-SSL13	unknown	unknown	gnl\|CDD\|106307
CP030138.1\|QAZ59106.1\|1191974_1192325_+\|fibrinogen-binding-protein	unknown	unknown	gnl\|CDD\|371594
CP030138.1\|QAZ59104.1\|1190558_1191065_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59110.1\|1196490_1196637_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59120.1\|1206945_1207080_+\|beta-class-phenol-soluble-modulin	unknown	unknown	gnl\|CDD\|368464
CP030138.1\|QAZ60935.1\|1193540_1193759_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ59119.1\|1205845_1206034_+\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|225382
CP030138.1\|QAZ59109.1\|1194750_1195923_+\|IS256-family-transposase-IS256	unknown	unknown	gnl\|CDD\|307151
CP030138.1\|QAZ59112.1\|1197318_1198035_-\|superantigen-like-protein-SSL12	unknown	unknown	gnl\|CDD\|171995

Protein	Function_ID	Function_description	E-value
CP030138.1\|QAZ59103.1\|1189485_1189887_-\|FPRL1-inhibitory-protein	gnl\|CDD\|171849	PRK13033, PRK13033, formyl peptide receptor-like 1 inhibitory protein; Reviewed.	3.87075e-77
CP030138.1\|QAZ59105.1\|1191323_1191821_+\|fibrinogen-binding-protein	gnl\|CDD\|289007	pfam12199, efb-c, Extracellular fibrinogen binding protein C terminal. This domain family is found in bacteria, and is approximately 70 amino acids in length. There is a conserved VLK sequence motif. It is the C terminal domain of bacterial extracellular fibrinogen binding protein. It contains a helical motif involved in complement regulation. This motif binds to complement and changes its conformation to a form which cannot activate downstream components of the complement cascade.	5.40265e-27
CP030138.1\|QAZ59119.1\|1205845_1206034_+\|DNA-binding-protein	gnl\|CDD\|225382	COG2826, Tra8, Transposase and inactivated derivatives, IS30 family [DNA replication, recombination, and repair].	0.00787195
CP030138.1\|QAZ59118.1\|1204649_1205597_-\|permease	gnl\|CDD\|187765	cd09325, TDT_C4-dicarb_trans, C4-dicarboxylate transporters of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. This subfamily contains bacterial C4-dicarboxylate transporters, which is part of the Tellurite-resistance/Dicarboxylate Transporter (TDT) family. It includes Tellurite resistance protein tehA; the tehA gene encodes an integral membrane protein that has been shown to have efflux activity of quaternary ammonium compounds. TehA protein of Escherichia coli functions as a tellurite-resistance uptake permease.	1.39126e-83
CP030138.1\|QAZ59114.1\|1198962_1199688_-\|superantigen-like-protein-SSL14	gnl\|CDD\|171855	PRK13043, PRK13043, superantigen-like protein; Reviewed.	8.18566e-161
CP030138.1\|QAZ60936.1\|1202304_1203810_+\|YfcC-family-protein	gnl\|CDD\|224207	COG1288, COG1288, Predicted membrane protein [Function unknown].	0
CP030138.1\|QAZ59109.1\|1194750_1195923_+\|IS256-family-transposase-IS256	gnl\|CDD\|307151	pfam00872, Transposase_mut, Transposase, Mutator family.	0
CP030138.1\|QAZ59106.1\|1191974_1192325_+\|fibrinogen-binding-protein	gnl\|CDD\|371594	pfam11546, CompInhib_SCIN, Staphylococcal complement inhibitor SCIN. SCIN is released by Staphylococcus aureus to counteract the host immune defense. The protein binds to and inhibits C3 convertases on the bacterial surface, reducing phagocytosis and blocking downstream effector functions by C3b deposition on its surface. An 18 residue stretch 31-48 is crucial for SCIN activity.	2.0882e-48
CP030138.1\|QAZ59115.1\|1200125_1201127_+\|ornithine-carbamoyltransferase	gnl\|CDD\|235269	PRK04284, PRK04284, ornithine carbamoyltransferase; Provisional.	0
CP030138.1\|QAZ59120.1\|1206945_1207080_+\|beta-class-phenol-soluble-modulin	gnl\|CDD\|368464	pfam05480, Staph_haemo, Staphylococcus haemolytic protein. This family consists of several different short Staphylococcal proteins, it contains SLUSH A, B and C proteins as well as haemolysin and gonococcal growth inhibitor. Some strains of the coagulase-negative Staphylococcus lugdunensis produce a synergistic hemolytic activity (SLUSH), phenotypically similar to the delta-hemolysin of S. aureus. Gonococcal growth inhibitor from Staphylococcus act on the cytoplasmic membrane of the gonococcal cell causing cytoplasmic leakage and, eventually, death.	6.35158e-13
CP030138.1\|QAZ59116.1\|1201149_1202082_+\|carbamate-kinase-1	gnl\|CDD\|237071	PRK12353, PRK12353, putative amino acid kinase; Reviewed.	0
CP030138.1\|QAZ59113.1\|1198142_1198868_-\|superantigen-like-protein-SSL13	gnl\|CDD\|106307	PRK13349, PRK13349, superantigen-like protein; Reviewed.	4.11802e-148
CP030138.1\|QAZ59112.1\|1197318_1198035_-\|superantigen-like-protein-SSL12	gnl\|CDD\|171995	PRK13350, PRK13350, superantigen-like protein; Reviewed.	1.29441e-152

>CP030138.1|QAZ59111.1|1196593_1196818_+|hypothetical-protein
MLIQERGLKMTELNNIINSLQSLFESESGYKISKNSGVPYQTVQDLRNGKTKLEDARFRTIIKLYSYYVSLKEH
>CP030138.1|QAZ59110.1|1196490_1196637_+|hypothetical-protein
MKLFYIVFLIIIWLNIFLGNEIIHTLTVLITTLYIVNSRKGIKNDRVE
>CP030138.1|QAZ59109.1|1194750_1195923_+|IS256-family-transposase-IS256
MTQVHFTLKSEEIQSIIEYSVKDDVSKNILTTVFNQLMENQRTEYIQAKEYERTENRQSQRNGYYERSFTTRVGTLELKVPRTRDGHFSPTVFERYQRNEKALMASMLEMYVSGVSTRKVSKIVEELCGKSVSKSFVSSLTEQLEPMVNEWQNRLLSEKNYPYLMTDVLYIKVREENRVLSKSCHIAIGITKDGDREIIGFMIQSGESEETWTTFFEYLKERGLQGTELVISDAHKGLVSAIRKSFTNVSWQRCQVHFLRNIFTTIPKKNSKSFREAVKGIFKFTDINLAREAKNRLIHDYIDQPKYSKACASLDDGFEDAFQYTVQGNSHNRLKSTNLIERLNQEVRRREKIIRIFPNQTSANRLIGAVLMDLHDEWIYSSRKYINFDK
>CP030138.1|QAZ59108.1|1193952_1194186_-|hypothetical-protein
MVFNDWEINVVYSGEHEVVTNEKSLFVIDEFYDVAIAIYYLDGKLKVAHVNYGSDFTIDVANKVFELNIQNPNVDEH
>CP030138.1|QAZ60935.1|1193540_1193759_-|hypothetical-protein
MINFGLIIVPLLTTNDADFVWTSSSLIYMILLTSIILIVYIKTKDSLQLTIFILNIALIILYCAPLLFIYVF
>CP030138.1|QAZ59107.1|1193145_1193331_-|hypothetical-protein
MNKHINKKAAKLLEDYKKVQQRKSKETDRGCLKSVIMLIVLFFLIIFGIVACSTNVNFFFQ
>CP030138.1|QAZ59106.1|1191974_1192325_+|fibrinogen-binding-protein
MKFKKYILTGTLALLLSSTGIATIEGNKADASSLDKYLTESQFHDKRIAEELRTLLNKSNVYALAAGSLNPYYKRTIMMNEYRAKAALKKNDFVSMADAKVALEKIYKEIDEIINR
>CP030138.1|QAZ59105.1|1191323_1191821_+|fibrinogen-binding-protein
MKNKLIAKSLLTLAAIGITTTTIASTADASEGYGPREKKPVSINHNIVEYNDGTFKYQSRPKFNSTPKYIKFKHDYNILEFNDGTFEYGARPQFNKPAAKTDATIKKEQKLIQAQNLVREFEKTHTVSAHRKAQKAVNLVSFEYKVKKMVLQERIDNVLKQGLVK
>CP030138.1|QAZ59104.1|1190558_1191065_+|hypothetical-protein
MIIKILTILLLLCILSYLVTNRKKPFLFLKTLFMGVVFIFIGYISLAISAVIIYGIIQFITIDFGSFFLMGIILILISSIFQLFIVRLLFRKKNVDLTEVVVLEHLIQWFLVYFAIYQAVNEKMDINDINIDNFQSVFFDVSNLNLVILPTLIISWVTIFNYRMRSYK
>CP030138.1|QAZ59103.1|1189485_1189887_-|FPRL1-inhibitory-protein
MKKNITKTIIASTVIAAGLLTQTNDAKAFFSYEWKGLEIAKNLADQAKKDDERIDKLMKESDKNLTPYKAETVNDLYLIVKKLSQGDVKKAVVRIKDGGPRDYYTFDLTRPLEENRKNIKVVKNGEIDSITWY
>CP030138.1|QAZ59112.1|1197318_1198035_-|superantigen-like-protein-SSL12
MSKNITKNIILTTTLLLLGTVLPQNQKPVFSFYSEAKAYSIGQDETNINELIKYYTQPHFSFSNKWLYQYDNGNIYVELKRYSWSAHISLWGAESWGNINQLKDRYVDVFGLKDKDTDQLWWSYRETFTGGVTPAAKPSDKTYNLFVQYKDKLQTIIGAHKIYQGNKPVLTLKEIDFRAREALIKNKILYNENRNKGKLKITGGGNNYTIDLSKRLHSDLANVYVKNPNKITVDVLFD
>CP030138.1|QAZ59113.1|1198142_1198868_-|superantigen-like-protein-SSL13
MNNNITKKIILSTTLLLLGTASTQFPNTPINSSSEAKAHYINQNETNVNELTKYYSQKYLTFSNSTLWQKDNGTIHATLLQFSWYSHIQVYGPESWGNINQLRNKSVDIFGIKDQETIDSFALSQETFTGGVTPAATSNDKHYKLNVTYKDKAETFTGGFPVYEGNKPVLTLKELDFRIRQTLIKSKKLYNNSYNKGQIKITGADNNYTIDLSKRLPSTDANRYVKKPQNAKIEVILEKSN
>CP030138.1|QAZ59114.1|1198962_1199688_-|superantigen-like-protein-SSL14
MKKNIMNKLVLSTALLLLETTSTQLPKTPISFSSEAKAYNISENETNINELIKYYTQPHFSLSGKWLWQKPNGSIHATLQTWVWYSHIQVFGSESWGNINQLRNKYVDIFGTKDEDTVEGYWTYDETFTGGVTPAATSSDKPYRLFLKYSDKQQTIIGGHEFYKGNKPVLTLKELDFRIRQTLIKNKKLYNGEFNKGQIKITADGNNYTIDLSKKLKLTDTNRYVKNPRNAEIEVILEKSN
>CP030138.1|QAZ59115.1|1200125_1201127_+|ornithine-carbamoyltransferase
MKNLRNRSFLTLLDFSRQEVEFLLTLSEDLKRAKYIGTEKPMLKNKNIALLFEKDSTRTRCAFEVAAHDQGANVTYLGPTGSQMGKKETTKDTARVLGGMYDGIEYRGFSQRTVETLAEYSGVPVWNGLTDEDHPTQVLADFLTAKEVLKKDYADINFTYVGDGRNNVANALMQGAAIMGMNFHLVCPKELNPTDELLNRCKNIAAENGGNILITDDIDQGVKGSDVIYTDVWVSMGEPDEVWKERLELLKPYQVNKEIMDKTGNPNVIFEHCLPSFHNADTKIGQQIFEKYGIREMEVTDEVLESKASVVFQEAENRMHTIKAVMVATLGEF
>CP030138.1|QAZ59116.1|1201149_1202082_+|carbamate-kinase-1
MAKIVVALGGNALGKSPQEQLELVKNTAKSLVGLITKGHEIVISHGNGPQVGSINLGLNYAAEHNQGPAFPFAECGAMSQAYIGYQLQESLQNELHSIGMDKQVVTLVTQVEVDENDPAFNNPSKPIGLFYNKEEAEQIQKEKGFIFVEDAGRGYRRVVPSPQPISIIELESIKTLIKNDTLVIAAGGGGIPVIREQHDGFKGIDAVIDKDKTSALLGANIQCDQLIILTAIDYVYINFNTENQQPLKTTNVDELKRYIDENQFAKGSMLPKIEAAISFIENNPKGSVLITSLNELDAALEGKVGTVIKK
>CP030138.1|QAZ60936.1|1202304_1203810_+|YfcC-family-protein
MPGAFMILFILTVVAVIATWVIPAGAYSKLSYEPSSQELKIVNPHNQVKKVPGTQQELDKMGVKIKIEQFKSGAINKPVSIPNTYERLKQHPAGPEQITSSMVEGTIEAVDIMVFILVLGGLIGVVQASGSFESGLLALTKKTKGHEFMLIVFVSILMIIGGTLCGIEEEAVAFYPILVPIFIALGYDSIVSVGAIFLASSVGSTFSTINPFSVVIASNAAGTTFTDGLYWRIGACIVGAIFVISYLYWYCKKIKNDPKASYSYEDKDAFEQQWSVLKDDDSAHFTLRKKIILTLFVLPFPIMVWGVMTQGWWFPVMASAFLIFTIIIMFIAGTGKSGLGEKGTVDAFVNGASSLVGVSLIIGLARGINLVLNEGMISDTILHFSSSLVQHMSGPLFIIVLLFIFFCLGFIVPSSSGLAVLSMPIFAPLADTVGIPRFVIVTTYQFGQYAMLFLAPTGLVMATLQMLNMRYSHWFRFVWPVVAFVLIFGGGVLITQVLIYS
>CP030138.1|QAZ59117.1|1204117_1204345_+|hypothetical-protein
MTHLTKVLDTLTGICVVLLFSKYFVAYANMVFDWNLRWYLLENIPHLPIILFILMFIFGVPSEMIKDRQRKNNGV
>CP030138.1|QAZ59118.1|1204649_1205597_-|permease
MRLQKAPLVTSGLVLGLLGLGNLLKDLSLTLNAVCGIFAFLIWIHLLCTMIKYFNNVKEQLNSPLVSSVFTTFFMSGFLGTTYLNTFFSNITFINSLITPIWILCLVGIMTHMIIFSIKYLKDFSLKNVYPSWTVLFIGIAIAGLTAPVSGYFFIGQLTVIYGFVATCIVLPIVFKRLKAFPLQTSIKPNTSTICAPFSLVAAAYVIAFPKANAFIVIIFLLLAQIFYFYIIIQLPKLLKEPFSPVFSAFTFPLVISATALKNSLPVLMFPDIWKGLLFIEVLLATVIVLRVFIGYLHFFLKKEKQDKFLRNASQ
>CP030138.1|QAZ59119.1|1205845_1206034_+|DNA-binding-protein
MRNQIQKLLDSDLSSLHISKQTGVPQSTIHRMRKNERSLDNMSLKNAELLYKFANSIFSNEN
>CP030138.1|QAZ59120.1|1206945_1207080_+|beta-class-phenol-soluble-modulin
MEGLFNAIKDTVTAAINNDGAKLGTSIVSIVENGVGLLGKLFGF

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Crispr_ID: CP030138_10

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030138_10

2425243-2425393

Orphan

Consensus_repeat	Method
AACTTTAGTTGTTAGGGGCTCTTATGCA	CRISPRCasFinder

2 spacers

csa3

The CRISPR arrays of CP030138_10

>merge|CP030138|10|2425243-2425393|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCATGCGCTTAGCGCAGGCGCTCCTACTTTTAAACTTTAGTTGTTAGGGGCTCTTATGCAGTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTCAACTTTAGTTGTTAGGGGCTTCTTTCTA

>CP030138|10|8|2425243-2425393|CRISPRCasFinder
AACTTTAGTTGTTAGGGGCTCTTATGCA	TGCGCTTAGCGCAGGCGCTCCTACTTTTA
AACTTTAGTTGTTAGGGGCTCTTATGCA	GTTGATGCGTAGCATCCAACTGTGTTCCTCTATTTTTC
AACTTTAGTTGTTAGGGGCTTCTTTCTA

Protein	Signature genes	Signature genes Name	Protein_function
CP030138.1\|QAZ60302.1\|2420114_2420345_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ60305.1\|2422565_2422886_+\|ArsR-family-transcriptional-regulator	csa3	COG0640_csa3_CAS-I-A	gnl\|CDD\|238042
CP030138.1\|QAZ60313.1\|2430519_2432325_-\|glutamine--fructose-6-phosphate-aminotransferase	unknown	unknown	gnl\|CDD\|234729
CP030138.1\|QAZ60299.1\|2415866_2416547_+\|purine-nucleoside-phosphorylase	unknown	unknown	gnl\|CDD\|180275
CP030138.1\|QAZ60309.1\|2426253_2426457_-\|resolvase	unknown	unknown	gnl\|CDD\|239737
CP030138.1\|QAZ60308.1\|2425724_2425829_-\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ60303.1\|2420375_2421314_-\|class-I-mannose-6-phosphate-isomerase	unknown	unknown	gnl\|CDD\|224399
CP030138.1\|QAZ60307.1\|2424133_2425225_+\|transcriptional-regulator	unknown	unknown	unknown
CP030138.1\|QAZ60311.1\|2427940_2428033_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ60310.1\|2426515_2427652_-\|DNA-binding-protein	unknown	unknown	gnl\|CDD\|366887
CP030138.1\|QAZ60315.1\|2434578_2436711_+\|PRD-domain-containing-protein	unknown	unknown	gnl\|CDD\|226234
CP030138.1\|QAZ60301.1\|2418069_2419443_-\|EVE-domain-containing-protein	unknown	unknown	gnl\|CDD\|376640
CP030138.1\|QAZ60316.1\|2436722_2437157_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	unknown	unknown	gnl\|CDD\|227014
CP030138.1\|QAZ60306.1\|2422887_2423868_+\|cation-transporter	unknown	unknown	gnl\|CDD\|224151
CP030138.1\|QAZ60312.1\|2429505_2430288_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224044
CP030138.1\|QAZ60314.1\|2433005_2434544_+\|PTS-mannitol-transporter-subunit-IICB	unknown	unknown	gnl\|CDD\|225123
CP030138.1\|QAZ60317.1\|2437156_2438263_+\|mannitol-1-phosphate-5-dehydrogenase	unknown	unknown	gnl\|CDD\|235031
CP030138.1\|QAZ60304.1\|2421748_2422414_-\|SDR-family-NAD(P)-dependent-oxidoreductase	unknown	unknown	gnl\|CDD\|187554
CP030138.1\|QAZ60298.1\|2414464_2414593_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ60300.1\|2416667_2417111_-\|DNA-starvation/stationary-phase-protection-protein	unknown	unknown	gnl\|CDD\|223854

Protein	Function_ID	Function_description	E-value
CP030138.1\|QAZ60305.1\|2422565_2422886_+\|ArsR-family-transcriptional-regulator	gnl\|CDD\|238042	cd00090, HTH_ARSR, Arsenical Resistance Operon Repressor and similar prokaryotic, metal regulated homodimeric repressors. ARSR subfamily of helix-turn-helix bacterial transcription regulatory proteins (winged helix topology). Includes several proteins that appear to dissociate from DNA in the presence of metal ions.	1.8473e-17
CP030138.1\|QAZ60313.1\|2430519_2432325_-\|glutamine--fructose-6-phosphate-aminotransferase	gnl\|CDD\|234729	PRK00331, PRK00331, isomerizing glutamine--fructose-6-phosphate transaminase.	0
CP030138.1\|QAZ60299.1\|2415866_2416547_+\|purine-nucleoside-phosphorylase	gnl\|CDD\|180275	PRK05819, deoD, DeoD-type purine-nucleoside phosphorylase.	5.8177e-150
CP030138.1\|QAZ60309.1\|2426253_2426457_-\|resolvase	gnl\|CDD\|239737	cd03768, SR_ResInv, Serine Recombinase (SR) family, Resolvase and Invertase subfamily, catalytic domain; members contain a C-terminal DNA binding domain. Serine recombinases catalyze site-specific recombination of DNA molecules by a concerted, four-strand cleavage and rejoining mechanism which involves a transient phosphoserine linkage between DNA and the enzyme. They are functionally versatile and include resolvases, invertases, integrases, and transposases. Resolvases and invertases affect resolution or inversion and comprise a major phylogenic group. Resolvases (e.g. Tn3, gamma-delta, and Tn5044) normally recombine two sites in direct repeat causing deletion of the DNA between the sites. Invertases (e.g. Gin and Hin) recombine sites in inverted repeat to invert the DNA between the sites. Cointegrate resolution with gamma-delta resolvase requires the formation of a synaptosome of three resolvase dimers bound to each of two res sites on the DNA. Also included in this subfamily are some putative integrases including a sequence from bacteriophage phi-FC1.	1.78732e-14
CP030138.1\|QAZ60303.1\|2420375_2421314_-\|class-I-mannose-6-phosphate-isomerase	gnl\|CDD\|224399	COG1482, ManA, Phosphomannose isomerase [Carbohydrate transport and metabolism].	7.24075e-129
CP030138.1\|QAZ60315.1\|2434578_2436711_+\|PRD-domain-containing-protein	gnl\|CDD\|226234	COG3711, BglG, Transcriptional antiterminator [Transcription].	4.09729e-67
CP030138.1\|QAZ60310.1\|2426515_2427652_-\|DNA-binding-protein	gnl\|CDD\|366887	pfam02037, SAP, SAP domain. The SAP (after SAF-A/B, Acinus and PIAS) motif is a putative DNA/RNA binding domain found in diverse nuclear and cytoplasmic proteins.	3.91533e-06
CP030138.1\|QAZ60301.1\|2418069_2419443_-\|EVE-domain-containing-protein	gnl\|CDD\|376640	pfam01878, EVE, EVE domain. This domain was formerly known as DUF55. Crystal structures have shown that this domain is part of the PUA superfamily. This domain has been named EVE and is thought to be RNA-binding.	3.86989e-06
CP030138.1\|QAZ60316.1\|2436722_2437157_+\|mannitol-specific-phosphotransferase-enzyme-IIA-component	gnl\|CDD\|227014	COG4668, MtlA, Mannitol/fructose-specific phosphotransferase system, IIA domain [Carbohydrate transport and metabolism].	2.08822e-62
CP030138.1\|QAZ60306.1\|2422887_2423868_+\|cation-transporter	gnl\|CDD\|224151	COG1230, CzcD, Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism].	1.049e-108
CP030138.1\|QAZ60312.1\|2429505_2430288_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224044	COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism].	4.88024e-103
CP030138.1\|QAZ60314.1\|2433005_2434544_+\|PTS-mannitol-transporter-subunit-IICB	gnl\|CDD\|225123	COG2213, MtlA, Phosphotransferase system, mannitol-specific IIBC component [Carbohydrate transport and metabolism].	0
CP030138.1\|QAZ60317.1\|2437156_2438263_+\|mannitol-1-phosphate-5-dehydrogenase	gnl\|CDD\|235031	PRK02318, PRK02318, mannitol-1-phosphate 5-dehydrogenase; Provisional.	0
CP030138.1\|QAZ60304.1\|2421748_2422414_-\|SDR-family-NAD(P)-dependent-oxidoreductase	gnl\|CDD\|187554	cd05243, SDR_a5, atypical (a) SDRs, subgroup 5. This subgroup contains atypical SDRs, some of which are identified as putative NAD(P)-dependent epimerases, one as a putative NAD-dependent epimerase/dehydratase. Atypical SDRs are distinct from classical SDRs. Members of this subgroup have a glycine-rich NAD(P)-binding motif that is very similar to the extended SDRs, GXXGXXG, and binds NADP. Generally, this subgroup has poor conservation of the active site tetrad; however, individual sequences do contain matches to the YXXXK active site motif, the upstream Ser, and there is a highly conserved Asp in place of the usual active site Asn throughout the subgroup. Atypical SDRs generally lack the catalytic residues characteristic of the SDRs, and their glycine-rich NAD(P)-binding motif is often different from the forms normally seen in classical or extended SDRs. Atypical SDRs include biliverdin IX beta reductase (BVR-B,aka flavin reductase), NMRa (a negative transcriptional regulator of various fungi), progesterone 5-beta-reductase like proteins, phenylcoumaran benzylic ether and pinoresinol-lariciresinol reductases, phenylpropene synthases, eugenol synthase, triphenylmethane reductase, isoflavone reductases, and others. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold, an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Sequence identity between different SDR enzymes is typically in the 15-30% range; they catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase numbering). In addition to the Tyr and Lys, there is often an upstream Ser and/or an Asn, contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. In addition to the Rossmann fold core region typical of all SDRs, extended SDRs have a less conserved C-terminal extension of approximately 100 amino acids, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif.	5.74381e-48
CP030138.1\|QAZ60300.1\|2416667_2417111_-\|DNA-starvation/stationary-phase-protection-protein	gnl\|CDD\|223854	COG0783, Dps, DNA-binding ferritin-like protein (oxidative damage protectant) [Inorganic ion transport and metabolism].	1.22744e-67

>CP030138.1|QAZ60307.1|2424133_2425225_+|transcriptional-regulator
MFTYFKSAFKNAKPQLLITLIYALIAFAVIAVVYLLANFQLAKYAQTIAIYSQFGQKPPVDAYLKVIAVLLIAAVVSLFVLVQIFIGITNVMKRAMSHEKVKFTDLFIAFKKGNYLKSVLIGLVSIAMIIVLSLLTSLLYKLFSPVSEMIMNSVQSSYADSTHLIGIAITTQSIIIIVVLLIKAIITWLLLIPIFNFMTSFVESTNDKVKTHLANGFKAMKNGQKTFFKFFIGILLLNLIIILFKTPVGYLISFNTQSLSQSVAENIIRVYTVMTIILFVVIHAIILMGIVQYYLKRGQKITKDKVKTADKNKKVVTEPKNTKVENDKVTTSVETKTEKAQDSLNDNTTKTMTSDKPEDNQPK
>CP030138.1|QAZ60306.1|2422887_2423868_+|cation-transporter
MSHSHHHHDHMHSHVTTNNKKVLFISFLIIGLYMFIEIIGGLLANSLALLSDGIHMFSDTFSLGVALVAFIYAEKNATTTKTFGYKRFEVLAALFNGVTLFVISILIVFEAIKRFFVPSEVQSKEMLIISIIGLIVNIVVAFFMFKGGDTSHNLNMRGAFLHVIGDLLGSVGAITAAILIWAFGWTIADPIASILVSVIILKSAWGITKSSINILMEGTPSDVDIDEVITTIKKDSRIQSVHDCHVWTISNDMNALSCHVVVDHTLTMKECELLLENIEHDLLHLNIHHMTIQLETPNHKHDESIICSGTHSHSHNHHAHHHAHVH
>CP030138.1|QAZ60305.1|2422565_2422886_+|ArsR-family-transcriptional-regulator
MSEQYSEINTDTLERVTEIFKALGDYNRIRIMELLSVSEASVGHISHQLNLSQSNVSHQLKLLKSVHLVKAKRQGQSMIYSLDDIHVATMLKQAIHHANHPKESGL
>CP030138.1|QAZ60304.1|2421748_2422414_-|SDR-family-NAD(P)-dependent-oxidoreductase
MNILVIGANGGVGSLLVQQLAKENVPFTAGVRQSDQLNALKSQGMKAILVDVENDSIETLTETFKPFDKVIFSVGSGGNTGADKTIIVDLDGAVKSMIASKEANIKHYVMVSTYDSRRQAFDDSGDLKPYTIAKHYADDYLRRSGLNYTILHPGALTNAAGSGKIEAAQYFDGKGEIPREDVATVLKEIVTSNHFNHQEFQIISGDQDIKDALTQFENETD
>CP030138.1|QAZ60303.1|2420375_2421314_-|class-I-mannose-6-phosphate-isomerase
MPLFLQPILKTKLWGGQRLSEFGYQLDNDTTGECWCVSAHPNGTSEIINGPYQGQTLDRIWSEHRELFGDFPSKDFPLLTKIVDARESLSIHVHPDNSYAYEHENGQYGKSECWYIIDAEEDAEIVIGTLAESREEVANHVQHGTIESILRYIKVKPGEFYFIPAGTVHTISSGILAYETMQSSDITYRLYDFNRQDNQYNDRPLNIEKALDVIQYNAPLPNILPESEIIENHKCTHIVSNDFFTLVKWEISGTLNYMKPREFCLVTVLEGEGQMIVDGEIFKLTTGTNFILTSEDLDSVFEGDFTLMISYV
>CP030138.1|QAZ60302.1|2420114_2420345_-|hypothetical-protein
MKQFLYIALVCGVIAGLGAFLHIPQYPSMTIPRIVAILGIISAMLTFKDKQISASLKFSALLINVLPLCGTFVASN
>CP030138.1|QAZ60301.1|2418069_2419443_-|EVE-domain-containing-protein
MTAETNYFWLNCGYNRWNHNEPLVGQTALFESGAHFNPSQGFRAFKKAKVGDQVIFYQVQTDTGLLGCGEIISVETGAQNKIRVQFRFNEQLKPLTADYLKRSEALEFRISNMKETLFNQITAEEFDLISGLGKGEIKIPRYFFLAETEEFEPGNQYTIYTHTYNGIKRNGYHFYTQLEEGDNIIFYNRTKNQSVVGIGEVSKHIHEKPPIPGRTNSTVIEVSYEKDITPITLSTLNKHPKLKNLYFLQENAKQAIASMSQAQYDAIIEMSDNNGLKSPFEMVQKPDMLESEKEEALKPFILLVVDRKEEGLKAANDLLQKANANPVITTGHPDFSEDMLYGKYLPNETGALYYREGFITQLMPKKDKSYLVIDNFNRIDTDIFQTYINVLEGYEVTLPRYNKDGNMIKWSRQKDSFYYFNPNWHIVGITYDSLEEIKEKYSEQFLKYTRIVKVKHD
>CP030138.1|QAZ60300.1|2416667_2417111_-|DNA-starvation/stationary-phase-protection-protein
MSNQQDVVKELNQQVANWTVAYTKLHNFHWYVKGPNFFSLHVKFEELYNEASQYVDELAERILAVGGNPVGTLTECLEQSIVKEAAKGYSAEQMVEELSQDFTNISKQLENAIEIAGNAGDDVSEDMFIGMQTSVDKHNWMFKSYLS
>CP030138.1|QAZ60299.1|2415866_2416547_+|purine-nucleoside-phosphorylase
MNIKETKTVLMPGDPLRAKYIADNFLENVEQFNDVRNMFGYTGTYKGKEVSVMGSGMGIPSIGIYSYELYNFFDVDTIIRIGSCGALQENVNLYDVIIAQAASTNSNYVDQYNIPGHFAPIADFELVTKAKNVADQIGATTHVGNVLSSDTFYNADPTFNDAWKKMGILGIEMESAGLYLNAIHAGKKALGIFTVSDHILRDEATTPEERQNSFTQMMEIALEIAE
>CP030138.1|QAZ60298.1|2414464_2414593_+|hypothetical-protein
MSIILIFIILFLKSLGQSICAFSSPFLKAQAKIIIASYRFHF
>CP030138.1|QAZ60308.1|2425724_2425829_-|hypothetical-protein
MLLLERTSMSDFEMLMVVLTIIGLVLISTQDHKK
>CP030138.1|QAZ60309.1|2426253_2426457_-|resolvase
MIVYQRKINIDTLKEFGCGCVYSERISGVKRTELVKCLDYLRESDTLVVYQLDRLGRTTKLLIELSQ
>CP030138.1|QAZ60310.1|2426515_2427652_-|DNA-binding-protein
MSVNARDLLVLHTNVNRLVGEEIFANKCLANNDVQIMNSIKKLIEAELLTTTNDFEVSIYKKTRPELQSILKSFGIKTTGNKPDLIKRIDDNFHIINNLDLPYVYIPTKKGEEILKKTEYLTSFIQSYGEISLERAYYLVENYIDENCDDKVAEIYKFEFQRKYDNGEFDFNHGYNFELNMLIDHYKRDVKDYDNARKYSNIYLYFGLRDFLKKLMSNYSYYDSKGNIDLNEIQNDLNRFINSSASGMYERLIYNENLSNNIMFELFKKDTQDYSDLEEQLIEKFINYVVSNVKKESRSNTLIELSKILENGYTIDKEEFKKEDDYLSKYIFTDIDYLKKLESKINVAIDIRSGEIHLVLDDDSLDILIQNQKYGNEF
>CP030138.1|QAZ60311.1|2427940_2428033_+|hypothetical-protein
MFIFKTTSKSHFHNNVKSLECIKIPINKNR
>CP030138.1|QAZ60312.1|2429505_2430288_-|ABC-transporter-ATP-binding-protein
MLIQLDQIGRMKQGKTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSAETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMFAKAQQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQGAVEDILTSENMSRFFQKNVAVQRWNNRFSMAMLE
>CP030138.1|QAZ60313.1|2430519_2432325_-|glutamine--fructose-6-phosphate-aminotransferase
MCGIVGYIGYDNAKELLLKGLEKLEYRGYDSAGIAVVNDDNTTVFKEKGRIAELRKVADSSDFDGPVGIGHTRWATHGVPNHENSHPHQSSNGRFTLVHNGVIENYEELKGEYLQGVSFISETDTEVIVQLVEYFSNQGLSTEEAFTKVVSLLHGSYALGLLDAEDKDTIYVAKNKSPLLLGVGEGFNVIASDALAMLQVTSEYKEIHDHEIVIVKKDEVIIKDADGNVVERDSYIAEIDASDAEKGVYAHYMLKEIHEQPAVMRRIIQEYQDAEGNLKIDQDIINDVKEADRIYVIAAGTSYHAGLVGKEFLEKWAGVPTEVHVASEFVYNMPLLSEKPLFVYISQSGETADSRAVLVETNKLGHKSLTITNVAGSTLSREADHTLLLHAGPEIAVASTKAYTAQIAVLSILSQIVAKEHGREADIDLLRELAKVTTAIEAIVDDTPIMEQIATDFLETTRNAFFIGRTIDYNVSLEGALKLKEISYIQAEGFAGGELKHGTIALIEEGTPVVGLATQEKVNLSIRGNVKEVVARGAHPCIISMEGLEKEGDTYVIPHVHELLTPLVSVVALQLISYYAALHRDLDVDKPRNLAKSVTVE
>CP030138.1|QAZ60314.1|2433005_2434544_+|PTS-mannitol-transporter-subunit-IICB
MSQTEEKKGIGRRFQAFGSFLSSMIMPNIGAFIAWGFIAAIFIDNGWLPNKDLATLAGPMITYLIPLLIAFSGGRLIYDLRGGIIAATATMGVIVALPDTPMLLGAMIMGPLVGWLMKKTDQLIQPRTPQGFEMLFNNFSAGILGFIMTIAGFKILAPLMKFIMHILSVAVEALVHAHLLPLVSILVEPAKIVFLNNAINHGVFTPLGADQAAKAGQSILYTIESNPGPGLGILLAYMIFGKGTAKATSYGAGIIHFLGGIHEIYFPYVLMRPLLFIAVILGGMTGVATYQATGFGFKSPASPGSFIVYCLNAPRGEFLHMLLGVFLAALVSFVVAALIMKFTREPKQDLEAATAQMENTKGKKSSVASKLVSSDKNVNTEENASGNVSETSSSDDDPEALLDNYNTEDVDAHNYNNINHVIFACDAGMGSSAMGASMLRNKFKKAGINDITVTNTAINQLPKDAQLVITQKKLTDRAIKQTPNAIHISVDNFLNSPRYEELLNNLKKDDQA
>CP030138.1|QAZ60315.1|2434578_2436711_+|PRD-domain-containing-protein
MLLSTREKEMIALLIKYHGQYITIHDIAQQLAVSSRTIHRELKGVEAYLTSFSLTLERANKKGLRIAGTDSDLNDLKQSIAQHQTIDLSVEEQKVIIIYALIQAKEPVKQYSLAQEIGVSVQTLAKMLDDLELDLNKYQLSLSRKRGEGIYLVGTESKKREFLSQLMVNNLNSTSVYSVIENHFVFHSLNQIHKDFVDLERIFNVERLLMDYLSALPYQLTESSYLTLTVHIVLSISRIKNGEYVALNDDIYDSVQNTFEHKVASELADKLGQIYDVTFNQAEIAFITIHLRGAKRKNLNDTSLNNRCEENKIKAFVNKVEMISGMTFADLDTLVDGLTLHLNPAINRLQANIETYNPLTDMIKFKYPRLFENVRLALNDCWPDLIFPESEIAFIVLHFGGSIKNQGNRFLNILVVCSSGMGTSRLLSTRLEQVFSEIERITQASVSDLKSLDLSQYDGIISTVNLDIDSPYLTVNPLLPDSDISYVAQFLNTKSTFQETHDKSSNMIDKDDVHVETKDVDGNTSFENEQTSYLTSVFEKHLSDEKSEQLLHHMRSGLTLLDSVKIVSTEVKQWQTYIADYLYQCDVINDPTSFAELLEQRLIDNPGWILSPYPVAIPHLRDNMIKHPMILITVLEEPLTLPSIQNDNQTIKYMISMFISDNDFMASLVSDLSEFLSLKLESIDTFMENPQELETLLRNKFLERIKKQFI
>CP030138.1|QAZ60316.1|2436722_2437157_+|mannitol-specific-phosphotransferase-enzyme-IIA-component
MSELFSNDNIFLNVNVNSQNEAIEKAGKALVDSGAVTDAYIQAMKDREQVVSTFMGNGLAIPHGTDEAKTNVIHSGLTLLQIPEGVDWDGEVVKVVVGIAGKDGEHLDLLSKIAITFSEEENVDRIVQAKSAEEIKQVFEEADA
>CP030138.1|QAZ60317.1|2437156_2438263_+|mannitol-1-phosphate-5-dehydrogenase
MKAVHFGAGNIGRGFIGYILADNNVKVTFADVNEEIINALAHDHQYDVILADESKTTTRVNNVDAINSMQPSEALKQAILEADIITTAVGVNILPIIAKSFAPFLKEKTNHVNIVACENAIMATDTLKKAVLDITGPLGNNIHFANSAVDRIVPLQKNENILDVMVEPFYEWVVEKDAWYGPELNHIKYVDDLTPYIERKLLTVNTGHAYLAYAGKFAGKATVLDAVEDSSIEAGLRRVLAETSQYITNEFDFTEAEQAAYVEKIIDRFNNSYLSDEVTRVGRGTLRKIGPKDRIIKPLTYLYNKDLERTGLLNTAALLLKYDDTADQETVEKNNYIKEHGLKAFLSEYAKVDDGLADEIIEAYNSLS

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Crispr_ID: CP030138_11

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP030138_11

2549375-2549568

Orphan

Consensus_repeat	Method
TGTTGGGGCCCCGCCAACTTGCA	CRT

3 spacers

The CRISPR arrays of CP030138_11

>merge|CP030138|11|2549375-2549568|CRT
TGTTGGGGCCCCGCCAACTTGCACATTATTGTATGCTGACTTTTCGTCACCTTCTGTGTTGGGGCCCCGTTCCCCAACTTGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTATGTTGGGGCCCCGCCAACTTGCACATTATTGTAAGCTGACTTTCTGTCAGCTTCTGTGTTGGGGCCCCGCCAACTTGTA

>CP030138|11|3|2549375-2549568|CRT
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTATGCTGACTTTTCGTCACCTTCTG
TGTTGGGGCCCCGTTCCCCAACT	TGCATTGTCTGTAGAATTTCTTTTTGAAATTCTCTA
TGTTGGGGCCCCGCCAACTTGCA	CATTATTGTAAGCTGACTTTCTGTCAGCTTCTG
TGTTGGGGCCCCGCCAACTTGTA

Protein	Signature genes	Signature genes Name	Protein_function
CP030138.1\|QAZ60420.1\|2546922_2547363_+\|MarR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197670
CP030138.1\|QAZ60414.1\|2539902_2540067_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ60415.1\|2540311_2540629_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ60430.1\|2552538_2553798_-\|molybdopterin-molybdenumtransferase-MoeA	unknown	unknown	gnl\|CDD\|238452
CP030138.1\|QAZ60431.1\|2553860_2554355_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	unknown	unknown	gnl\|CDD\|236483
CP030138.1\|QAZ60428.1\|2551596_2552043_-\|molybdopterin-synthase-catalytic-subunit	unknown	unknown	gnl\|CDD\|223391
CP030138.1\|QAZ60417.1\|2544099_2545365_-\|lipid-II:glycine-glycyltransferase-FemX	unknown	unknown	gnl\|CDD\|225224
CP030138.1\|QAZ60419.1\|2545996_2546761_-\|VOC-family-protein	unknown	unknown	gnl\|CDD\|379203
CP030138.1\|QAZ60423.1\|2549144_2549315_+\|hypothetical-protein	unknown	unknown	unknown
CP030138.1\|QAZ60422.1\|2548668_2549019_-\|HTH-type-transcriptional-regulator-SarV	unknown	unknown	gnl\|CDD\|130944
CP030138.1\|QAZ60425.1\|2549709_2550732_-\|cyclic-pyranopterin-monophosphate-synthase	unknown	unknown	gnl\|CDD\|274250
CP030138.1\|QAZ60434.1\|2556067_2556673_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|226628
CP030138.1\|QAZ60429.1\|2552056_2552542_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	unknown	unknown	gnl\|CDD\|224677
CP030138.1\|QAZ60426.1\|2550751_2551351_-\|molybdenum-cofactor-guanylyltransferase	unknown	unknown	gnl\|CDD\|234725
CP030138.1\|QAZ60416.1\|2540815_2543983_-\|AcrB/AcrD/AcrF-family-protein	unknown	unknown	gnl\|CDD\|223911
CP030138.1\|QAZ60432.1\|2554356_2554863_-\|molybdenum-cofactor-biosynthesis-protein	unknown	unknown	gnl\|CDD\|223595
CP030138.1\|QAZ60427.1\|2551357_2551591_-\|molybdopterin-synthase-sulfur-carrier-subunit	unknown	unknown	gnl\|CDD\|340452
CP030138.1\|QAZ60433.1\|2554893_2555898_-\|molybdopterin-biosynthesis-protein-MoeB	unknown	unknown	gnl\|CDD\|181084
CP030138.1\|QAZ60421.1\|2547355_2548567_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|341042
CP030138.1\|QAZ60418.1\|2545753_2546005_+\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP030138.1\|QAZ60420.1\|2546922_2547363_+\|MarR-family-transcriptional-regulator	gnl\|CDD\|197670	smart00347, HTH_MARR, helix_turn_helix multiple antibiotic resistance protein.	2.35323e-15
CP030138.1\|QAZ60429.1\|2552056_2552542_-\|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B	gnl\|CDD\|224677	COG1763, MobB, Molybdopterin-guanine dinucleotide biosynthesis protein [Coenzyme metabolism].	4.35501e-50
CP030138.1\|QAZ60421.1\|2547355_2548567_+\|MFS-transporter	gnl\|CDD\|341042	cd17489, MFS_YfcJ_like, Escherichia coli YfcJ, YhhS, and similar transporters of the Major Facilitator Superfamily. This subfamily is composed of Escherichia coli membrane proteins, YfcJ and YhhS, Bacillus subtilis uncharacterized MFS-type transporter YwoG, and similar proteins. YfcJ and YhhS are putative arabinose efflux transporters. YhhS has been implicated glyphosate resistance. YfcJ-like arabinose efflux transporters belong to the bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily (MFS) of transporters. MFS proteins are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	1.27961e-72
CP030138.1\|QAZ60430.1\|2552538_2553798_-\|molybdopterin-molybdenumtransferase-MoeA	gnl\|CDD\|238452	cd00887, MoeA, MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.	9.49423e-160
CP030138.1\|QAZ60431.1\|2553860_2554355_+\|cyclic-pyranopterin-monophosphate-synthase-MoaC	gnl\|CDD\|236483	PRK09364, moaC, cyclic pyranopterin monophosphate synthase MoaC.	3.63862e-98
CP030138.1\|QAZ60428.1\|2551596_2552043_-\|molybdopterin-synthase-catalytic-subunit	gnl\|CDD\|223391	COG0314, MoaE, Molybdopterin converting factor, large subunit [Coenzyme metabolism].	5.56799e-58
CP030138.1\|QAZ60417.1\|2544099_2545365_-\|lipid-II:glycine-glycyltransferase-FemX	gnl\|CDD\|225224	COG2348, COG2348, Peptidoglycan interpeptide bridge formation enzyme [Cell wall/membrane/envelope biogenesis].	4.8324e-143
CP030138.1\|QAZ60419.1\|2545996_2546761_-\|VOC-family-protein	gnl\|CDD\|379203	pfam13468, Glyoxalase_3, Glyoxalase-like domain. This domain is related to the Glyoxalase domain pfam00903.	1.50083e-38
CP030138.1\|QAZ60425.1\|2549709_2550732_-\|cyclic-pyranopterin-monophosphate-synthase	gnl\|CDD\|274250	TIGR02666, Cyclic_pyranopterin_monophosphate_synthase, molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine. [Biosynthesis of cofactors, prosthetic groups, and carriers, Molybdopterin].	1.0538e-165
CP030138.1\|QAZ60434.1\|2556067_2556673_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|226628	COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism].	3.32197e-115
CP030138.1\|QAZ60426.1\|2550751_2551351_-\|molybdenum-cofactor-guanylyltransferase	gnl\|CDD\|234725	PRK00317, mobA, molybdopterin-guanine dinucleotide biosynthesis protein MobA; Reviewed.	5.68918e-67
CP030138.1\|QAZ60416.1\|2540815_2543983_-\|AcrB/AcrD/AcrF-family-protein	gnl\|CDD\|223911	COG0841, AcrB, Cation/multidrug efflux pump [Defense mechanisms].	0
CP030138.1\|QAZ60432.1\|2554356_2554863_-\|molybdenum-cofactor-biosynthesis-protein	gnl\|CDD\|223595	COG0521, MoaB, Molybdopterin biosynthesis enzymes [Coenzyme metabolism].	1.02752e-64
CP030138.1\|QAZ60427.1\|2551357_2551591_-\|molybdopterin-synthase-sulfur-carrier-subunit	gnl\|CDD\|340452	cd00754, Ubl_MoaD, ubiquitin-like (Ubl) domain found in molybdenum cofactor biosynthesis protein D (MoaD) and similar proteins. MoaD, also termed molybdopterin synthase sulfur carrier subunit, or MPT synthase subunit 1, or MPT synthase small subunit, or molybdopterin-converting factor small subunit, or molybdopterin-converting factor subunit 1, is a conserved small sulfur carrier protein that has beta-grasp ubiquitin-like (Ubl) fold involved in biosynthesis of the molybdenum cofactor (Moco), an essential cofactor of a diverse group of redox enzymes. MoaD is activated in an ATP-dependent manner by sulfurtransferases similar to the activation mechanism of ubiquitin-activating enzyme E1.	8.16473e-25
CP030138.1\|QAZ60433.1\|2554893_2555898_-\|molybdopterin-biosynthesis-protein-MoeB	gnl\|CDD\|181084	PRK07688, PRK07688, thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated.	3.67241e-132
CP030138.1\|QAZ60422.1\|2548668_2549019_-\|HTH-type-transcriptional-regulator-SarV	gnl\|CDD\|130944	TIGR01889, Pleiotropic_Regulator_Of_Virulence, staphylococcal accessory regulator family. This model represents a family of transcriptional regulatory proteins in Staphylococcus aureus and Staphylococcus epidermidis. Some members contain two tandem copies of this region. This family is related to the MarR transcriptional regulator family described by pfam01047. [Regulatory functions, DNA interactions].	2.64009e-20

>CP030138.1|QAZ60423.1|2549144_2549315_+|hypothetical-protein
MFRFISFGQLVVYSTTFIPKKDILQLNGMECDINVKEPLKIYYVVILKSGIEMIFS
>CP030138.1|QAZ60422.1|2548668_2549019_-|HTH-type-transcriptional-regulator-SarV
MSNKVQRFIEAERELSQLKHWLKTTHKISIEEFVVLFKVYEAEKISGKELRDTLHFEMLWDTSKIDVIIRKIYKKELISKLRSETDERQVFYFYSTSQKKLLDKITKEIEVLSVTN
>CP030138.1|QAZ60421.1|2547355_2548567_+|MFS-transporter
MTNQGSLNKSPIFTKSFTINFLVNFIVYLCMYLLLVVIAGYSKQAFDASDSLAGLVVGLFIVGSLIGRFATGKFVNQIGPKRLLFIGLIALIITQLLYFIDGSLAFLIFVRLINGIATAVVTTATGTIAAYVTPVNRKSEGISLFSLSLVLGTAIGPFLGMLLITKYAIDLLFIICVILGILGLIISLFIKVDFEVTNNKTETNVIDKPRFSIHQFIAKEAIPVAVIMLLIGVTYASILTYLQAFALERHLVTAASYFFICYAIASLITRPIAGRLMDDKNENIIVYPAFIMLFLSFVCLISSYQSWLILLAGACLGLGYGNLSSAMQSIAIKVSPPIKYGIATSTFYVGLDAGVGFGPSFLGLFTHMFSYSEIFGFMAALAIITMLVYFLIHGRHVTRNAMN
>CP030138.1|QAZ60420.1|2546922_2547363_+|MarR-family-transcriptional-regulator
MLSQEFFNSFITIYRPYLKLAEPILEKHNIYYGQWLILRDIAKHQPTTLIEISHRRAIEKPTARKTLKALIENDLITVENSLEDKRQKFLTLTPKGHELYEIVCLDVQKLQQAVVAKTNISQDQMQETINVMNQIHEILLKEAHND
>CP030138.1|QAZ60419.1|2545996_2546761_-|VOC-family-protein
MILKFDHIIHYIDQLDRFSFPGDVIKLHSGGYHHKYGTFNKLGYINENYIELLDVENNEKLKKMAKTIEGGVAFATQIVQEKYEQGFKNICLRTNDIEAVKNKLQSEQVEVVGPIQMERDTHKDGKVKWQLLYIMNQDDDEIKPPFFIQWEESDSMRTKKLQKYFQKQFSIETVIVKSKNRSQTVSNWLKWFDMDIVEENDHYTDLILKNDDIYFRIEDGKVSKYHSVIIKDAQATSPYSIFIRGAIYRFEPLV
>CP030138.1|QAZ60418.1|2545753_2546005_+|hypothetical-protein
MRTIILSLFIIMNIVAIIMTLSQPLTVNYFSLRVILIFFTFILSIFFILIKSSRLNNILTILSIVLVIIHMGILAHSTYVYLY
>CP030138.1|QAZ60417.1|2544099_2545365_-|lipid-II:glycine-glycyltransferase-FemX
MEKMHITNQEHDAFVKSHPNGDLLQLTKWAETKKLTGWYARRIAVGRDGEVQGVAQLLFKKVPKLPYTLCYISRGFVVDYSNKEALNALLDSAKEIAKAEKAYAIKIDPDVEVDKGTDALQNLKALGFKHKGFKEGLSKDYIQPRMTMITPIDKNDDELLNSFERRNRSKVRLALKRGTTVERSDREGLKTFAELMKITGERDGFLTRDISYFENIYDALHEDGDAELFLVKLDPKENIAKVNQELNELHAEIAKWQQKMKTSEKQAKKAQNMINDAQNKIAKNEDLKRDLEALEKEHPEGIYLSGALLMFAGSKSYYLYGASSNEFRDFLPNHHMQYTMMKYAREHGATTYDFGGTDNDPDKDSEHYGLWAFKKVWGTYLSEKIGEFDYVLNQPLYQLIEQVKPRLTKAKIKISRKLKRK
>CP030138.1|QAZ60416.1|2540815_2543983_-|AcrB/AcrD/AcrF-family-protein
MIKKLLQFSLGNKFAIFLMVVLVVLGGVYASAKLKLELLPNVQNPVISVTTTMPGATPQSTQDEISSKIDNQVRSLAYVKNVKTQSIQNASIVTVEYENNTDMDKAEEQLKKEIDKIKFKDEVGQPELRRNSMDAFPVLAYSFSNKENDLKKVTKVLNEQLIPKLQTVDGVQNAQLNGQTNREITLKFKQNELEKYGLTADDVENYLKTATRTTPLGLFQFGDKDKSIVVDGQYQSVDAFKNINIPLTLAGGQGQSQSQSDNKQNSAMSDVNQASPQQNSKASAPNNISGMPTAKLGDLADITVGDVRTSISKTNGKDAVNLQITKAQDANTVQVAKDVQRKIDTFVDENKDFNVTKTMDTAKPVEKSLYTMVEKASLGTIVAIIVILLFLRNIRTTAISIISIPLSLLMALIALKLSDVSLNILTLGALTVAIGRVIDDSIVVVENIYRRLTDSEEQLKGENLIISATTEVFKPIMSSTLVTIIVFLPLVFVSGSVGEMFRPFALAIAFSLLASLLVSITLVPALAATLFKKGVKRRNKQHQEGLGVVSTTYKKVLHWSLNHKWIVIILSTLILVATIVFGGPRLGTSFISAGDDKFLAITYTPKPGETEQAVLNHAKDVEKYLKQKKHVKTIQYSVGGSSPVDPTGSTNSMAIMVEYDNDTPNFDVEADKVIKHADGFKHPGEWKNQDLGTGAGNKSVEVTVKGPSMDAIKSTVKDIEQKMKQVKGLANVKSDLSQTYDQYEIKVDQNKAAENGISASQLAMHLNENLPEKTVTTVKENGKTVDVKVKQNKQTDWSEDKLNNITLKKPTGGTIKLGDIATLVKTTTPSKLTQEQGDYATTVSAKVTNKDVGGTTRQVMSKINNLDKPNNVKVNIGGASDDINNAMTQLAFAMLAAIIIVYLILVITFKGGLAPFTILFSLPFTVIGVIIALLITGETISVPSLIGMLMLIGIVVTNAIVLIDRVINNEQQGMEMKEALIEAGGTRIRPILMTAIATIGALVPLLFGQDSSILISKGLAATVIGGLISSTLLTLVVVPVIYEILFTLKKRFTKR
>CP030138.1|QAZ60415.1|2540311_2540629_+|hypothetical-protein
MQFYLILLAILYLIVSFISIFKMEVVFTRILRIIMGVLLLFVLALTTMSFPKENWWVFIVLLLLVGNVEVTGFKMLKKDLKGVNILNLMSLFIFVIYFILTIVLF
>CP030138.1|QAZ60414.1|2539902_2540067_+|hypothetical-protein
MSLENQLAELKYDYVRLQGDIEKRESLNLDTSALVRQLKDIENEIRNVRAQMQD
>CP030138.1|QAZ60425.1|2549709_2550732_-|cyclic-pyranopterin-monophosphate-synthase
MVEQIKDKLGRPIRDLRLSVTDRCNFRCDYCMPKEVFGDDFVFLPKNELLTFDEMARIAKVYAELGVKKIRITGGEPLMRRDLDVLIAKLNQIDGIEDIGLTTNGLLLKKHGQKLYDAGLRRINVSLDAIDDTLFQSINNRNIKATTILEQIDYATSIGLNVKVNVVIQKGINDDQIIPMLEYFKDKHIEIRFIEFMDVGNDNGWDFSKVVTKDEMLTMIEQHFEIDPVEPKYFGEVAKYYRHKDNGVQFGLITSVSQSFCSTCTRARLSSDGKFYGCLFATVDGFNVKAFIRSGVTDEELKEQFKALWQIRDDRYSDERTAQTVANRQRKKINMNYIGG
>CP030138.1|QAZ60426.1|2550751_2551351_-|molybdenum-cofactor-guanylyltransferase
MKAIILAGGHSVRFGKPKAFAEVNGETFYSRVIKTLESTNMFNEIIISTNAQLATQFKYPNVVIDDENHNDKGPLAGIYTIMKQHPEEELFFVVSVDTPMITGKAVSTLYQFLVSHLIENHLDVAAFKEDGRFIPTIAFYSPNALGAITKALHSDNYSFKNVYHELSTDYLDVRDVDAPSYWYKNINYQHDLDALIQKL
>CP030138.1|QAZ60427.1|2551357_2551591_-|molybdopterin-synthase-sulfur-carrier-subunit
MKVLYFAEIKDILQKAQEDIVLEQALTVQQFEDLLFERYPQINNKKFQVAVNEEFVQKSDFIQPNDTVALIPPVSGG
>CP030138.1|QAZ60428.1|2551596_2552043_-|molybdopterin-synthase-catalytic-subunit
MKQFEIVTEPIQTEQYREFTINEYQGAVVVFTGHVREWTKGVKTEYLEYEAYIPMAEKKLAQIGDEINEKWPGTITSIVHRIGPLQISDIAVLIAVSSPHRKDAYRANEYAIERIKEIVPIWKKEIWEDGSKWQGHQKGNYEEAKREE
>CP030138.1|QAZ60429.1|2552056_2552542_-|molybdopterin-guanine-dinucleotide-biosynthesis-protein-B
MILQIVGYKKSGKTTLMRHIVSFLKSHGYTVATIKHHGHGKEDIQLQDSDVDHMKHFEAGADQSIVQGFQYQQTVTRVDNQNLTQIIEKSVTIDTNIVLVEGFKNADFEKVVVYRNEEELQVLQQLSNVCYSINVREHEDFTAFEQWLLNKIKNDCDTQLT
>CP030138.1|QAZ60430.1|2552538_2553798_-|molybdopterin-molybdenumtransferase-MoeA
MVVEKRNPIPVKEAIQRIVNQQSSMPAITVALEKSLNHILAEDIVATYDIPRFDKSPYDGFAIRSVDSQGASGQNRIEFKVIDHIGAGSVSDKLVGDHEAVRIMTGAQIPNGADAVVMFEQTIELEDTFTIRKPFSKNENISLKGEETKTGDVVLKKGQVINPGAIAVLATYGYAEVKVIKQPSVAVIATGSELLDVNDVLEDGKIRNSNGPMIRALAEKLGLEVGIYKTQKDDLDSGIQVVKEAMEKHDIVITTGGVSVGDFDYLPEIYKAVKAEVLFNKVAMRPGSVTTVAFVDGKYLFGLSGNPSACFTGFELFVKPAVKHMCGALEVFPQIIKATLMEDFTKANPFTRFIRAKATLTSAGATVVPSGFNKSGAVVAIAHANCMVMLPGGSRGFKAGHTVDIILTESDAAEEELLL
>CP030138.1|QAZ60431.1|2553860_2554355_+|cyclic-pyranopterin-monophosphate-synthase-MoaC
MTEFTHINQQGHAKMVDVSDKQITKRTAVAHSSITVNETIFKQISNNTNTKGNVLNTAQIAGIMAAKNTSTLIPMCHPLPLTGIDVHFSWDETNAPLYTLNIQTTVSTTGKTGVEMEALTAASATALTIYDMTKAVDKGMIIGETYLESKSGGKSGDFQRQSNQ
>CP030138.1|QAZ60432.1|2554356_2554863_-|molybdenum-cofactor-biosynthesis-protein
MGEHQNVKLNRTVKAAVLTVSDTRDFDTDKGGQCVRQLLQADDVEVSDAHYTIVKDEKVAITTQVKKWLEEDIDVIITTGGTGIAQRDVTIEAVKPLLTKEIDGFGELFRYLSYVEDVGTRALLSRAVAGTVNNKLIFSIPGSTGAVKLALEKLIKPELNHLIHELTK
>CP030138.1|QAZ60433.1|2554893_2555898_-|molybdopterin-biosynthesis-protein-MoeB
MSQERYSRQILFKQIGEIGQSKINQKCALIIGMGALGTHVAEGLVRAGIAKLIIVDRDYIEFSNLQRQTLFTEEDALKMMPKVVAAKKHLLALRSDVDIDDYIAHVDYYFLETHGQDVDVIIDATDNFETRQLINDFAYKYRIPWIYGGVVQSTYTEAAFIPGKTPCFNCLVPQLPALNLTCDTVGVIQPAVTMATSLQLRDAMKVLTEQPIDTKITYGDIWEGSHYSFGFSKMQRSDCTTCGDVPSYPYLNKNEQRYATLCGRDTVQYENASITHDILVQFLKQHQLNYRSNSYMVMFEFKGHRIVAFKGGRFLIHGMTRTSDATHLMNLLFG
>CP030138.1|QAZ60434.1|2556067_2556673_-|ATP-binding-cassette-domain-containing-protein
MLKINVKYQLKNTLIRINIDDTEPKIYAVRGPSGIGKTTVLNMIAGLRKADEAIIEVNGQLLTDTAKNVNVKIQQRRIGYLFQDYQLFPNMTVYKNITFMAEPSEHIDQLIQTLNIDHLMKQYPMTLSGGEAQRVALARALSTKPDLILLDEPFSSLDDTTKDESITLVKRIFNEWQIPIIFVTHSNYEAEQMAHEIITIG

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Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP030138_5	5.1\|915284\|34\|CP030138\|CRISPRCasFinder	915284-915317	34	CP030138.1	1406546-1406579	0	1.0
CP030138_5	5.1\|915284\|34\|CP030138\|CRISPRCasFinder	915284-915317	34	CP030138.1	1495732-1495765	0	1.0
CP030138_11	11.2\|2549454\|36\|CP030138\|CRT	2549454-2549489	36	CP030138.1	1196989-1197024	0	1.0
CP030138_4	4.1\|865419\|29\|CP030138\|CRISPRCasFinder	865419-865447	29	CP030138.1	404671-404699	1	0.966
CP030138_4	4.1\|865419\|29\|CP030138\|CRISPRCasFinder	865419-865447	29	CP030138.1	1861402-1861430	1	0.966
CP030138_6	6.1\|978707\|26\|CP030138\|CRT	978707-978732	26	CP030138.1	870821-870846	1	0.962
CP030138_6	6.1\|978707\|26\|CP030138\|CRT	978707-978732	26	CP030138.1	978651-978676	1	0.962
CP030138_6	6.3\|978821\|26\|CP030138\|CRT	978821-978846	26	CP030138.1	2060352-2060377	1	0.962
CP030138_6	6.4\|978877\|53\|CP030138\|CRT	978877-978929	53	CP030138.1	246070-246122	1	0.981
CP030138_6	6.4\|978877\|53\|CP030138\|CRT	978877-978929	53	CP030138.1	2854268-2854320	1	0.981
CP030138_8	8.1\|1192710\|35\|CP030138\|CRT	1192710-1192744	35	CP030138.1	1192654-1192688	1	0.971
CP030138_8	8.3\|1192823\|35\|CP030138\|CRT	1192823-1192857	35	CP030138.1	1192654-1192688	1	0.971
CP030138_8	8.5\|1192935\|35\|CP030138\|CRT	1192935-1192969	35	CP030138.1	2178274-2178308	1	0.971
CP030138_8	8.6\|1192840\|18\|CP030138\|PILER-CR	1192840-1192857	18	CP030138.1	1192671-1192688	1	0.944
CP030138_9	9.1\|1197088\|26\|CP030138\|CRISPRCasFinder	1197088-1197113	26	CP030138.1	281585-281610	1	0.962
CP030138_9	9.1\|1197088\|26\|CP030138\|CRISPRCasFinder	1197088-1197113	26	CP030138.1	833867-833892	1	0.962
CP030138_9	9.1\|1197088\|26\|CP030138\|CRISPRCasFinder	1197088-1197113	26	CP030138.1	870821-870846	1	0.962
CP030138_11	11.2\|2549454\|36\|CP030138\|CRT	2549454-2549489	36	CP030138.1	1861395-1861430	1	0.972
CP030138_4	4.1\|865419\|29\|CP030138\|CRISPRCasFinder	865419-865447	29	CP030138.1	281717-281745	2	0.931
CP030138_4	4.1\|865419\|29\|CP030138\|CRISPRCasFinder	865419-865447	29	CP030138.1	915326-915354	2	0.931
CP030138_4	4.1\|865419\|29\|CP030138\|CRISPRCasFinder	865419-865447	29	CP030138.1	998347-998375	2	0.931
CP030138_4	4.1\|865419\|29\|CP030138\|CRISPRCasFinder	865419-865447	29	CP030138.1	1196996-1197024	2	0.931
CP030138_4	4.1\|865419\|29\|CP030138\|CRISPRCasFinder	865419-865447	29	CP030138.1	1674836-1674864	2	0.931
CP030138_4	4.1\|865419\|29\|CP030138\|CRISPRCasFinder	865419-865447	29	CP030138.1	2071076-2071104	2	0.931
CP030138_4	4.1\|865419\|29\|CP030138\|CRISPRCasFinder	865419-865447	29	CP030138.1	2740735-2740763	2	0.931
CP030138_6	6.1\|978707\|26\|CP030138\|CRT	978707-978732	26	CP030138.1	833811-833836	2	0.923
CP030138_6	6.1\|978707\|26\|CP030138\|CRT	978707-978732	26	CP030138.1	833923-833948	2	0.923
CP030138_6	6.3\|978821\|26\|CP030138\|CRT	978821-978846	26	CP030138.1	404537-404562	2	0.923
CP030138_8	8.5\|1192935\|35\|CP030138\|CRT	1192935-1192969	35	CP030138.1	824321-824355	2	0.943
CP030138_8	8.5\|1192935\|35\|CP030138\|CRT	1192935-1192969	35	CP030138.1	870857-870891	2	0.943
CP030138_8	8.5\|1192935\|35\|CP030138\|CRT	1192935-1192969	35	CP030138.1	2854331-2854365	2	0.943
CP030138_9	9.1\|1197088\|26\|CP030138\|CRISPRCasFinder	1197088-1197113	26	CP030138.1	833811-833836	2	0.923
CP030138_9	9.1\|1197088\|26\|CP030138\|CRISPRCasFinder	1197088-1197113	26	CP030138.1	833923-833948	2	0.923
CP030138_11	11.1\|2549398\|33\|CP030138\|CRT	2549398-2549430	33	CP030138.1	1197045-1197077	2	0.939
CP030138_11	11.1\|2549398\|33\|CP030138\|CRT	2549398-2549430	33	CP030138.1	1406501-1406533	2	0.939
CP030138_11	11.1\|2549398\|33\|CP030138\|CRT	2549398-2549430	33	CP030138.1	1495778-1495810	2	0.939
CP030138_11	11.1\|2549398\|33\|CP030138\|CRT	2549398-2549430	33	CP030138.1	2060332-2060364	2	0.939
CP030138_11	11.1\|2549398\|33\|CP030138\|CRT	2549398-2549430	33	CP030138.1	2820119-2820151	2	0.939
CP030138_11	11.2\|2549454\|36\|CP030138\|CRT	2549454-2549489	36	CP030138.1	281710-281745	2	0.944
CP030138_11	11.2\|2549454\|36\|CP030138\|CRT	2549454-2549489	36	CP030138.1	1674836-1674871	2	0.944
CP030138_11	11.2\|2549454\|36\|CP030138\|CRT	2549454-2549489	36	CP030138.1	2071076-2071111	2	0.944
CP030138_11	11.3\|2549513\|33\|CP030138\|CRT	2549513-2549545	33	CP030138.1	870801-870833	2	0.939
CP030138_11	11.3\|2549513\|33\|CP030138\|CRT	2549513-2549545	33	CP030138.1	1197045-1197077	2	0.939
CP030138_11	11.3\|2549513\|33\|CP030138\|CRT	2549513-2549545	33	CP030138.1	1406501-1406533	2	0.939
CP030138_11	11.3\|2549513\|33\|CP030138\|CRT	2549513-2549545	33	CP030138.1	2060332-2060364	2	0.939
CP030138_11	11.3\|2549513\|33\|CP030138\|CRT	2549513-2549545	33	CP030138.1	2820119-2820151	2	0.939

1. spacer 5.1|915284|34|CP030138|CRISPRCasFinder matches to position: 1406546-1406579, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 5.1|915284|34|CP030138|CRISPRCasFinder matches to position: 1495732-1495765, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 11.2|2549454|36|CP030138|CRT matches to position: 1196989-1197024, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

4. spacer 4.1|865419|29|CP030138|CRISPRCasFinder matches to position: 404671-404699, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcttgtagaatttcttttcgaaa	Protospacer
*******.*********************

5. spacer 4.1|865419|29|CP030138|CRISPRCasFinder matches to position: 1861402-1861430, mismatch: 1, identity: 0.966

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaa	Protospacer
********.********************

6. spacer 6.1|978707|26|CP030138|CRT matches to position: 870821-870846, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*****************.********

7. spacer 6.1|978707|26|CP030138|CRT matches to position: 978651-978676, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

8. spacer 6.3|978821|26|CP030138|CRT matches to position: 2060352-2060377, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

9. spacer 6.4|978877|53|CP030138|CRT matches to position: 246070-246122, mismatch: 1, identity: 0.981

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgcgaaaatattatttctgtcccactcccaa	Protospacer
*********************************.*******************

10. spacer 6.4|978877|53|CP030138|CRT matches to position: 2854268-2854320, mismatch: 1, identity: 0.981

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttacgaaaatatcatttctgtcccactcccaa	Protospacer
***********************.*****************************

11. spacer 8.1|1192710|35|CP030138|CRT matches to position: 1192654-1192688, mismatch: 1, identity: 0.971

cagagagaaataggatcaccaatttcaacagacaa	CRISPR spacer
cagagagaaataggatcaccaattccaacagacaa	Protospacer
************************.**********

12. spacer 8.3|1192823|35|CP030138|CRT matches to position: 1192654-1192688, mismatch: 1, identity: 0.971

cagagagaaataggatcaccaattccaacaaacaa	CRISPR spacer
cagagagaaataggatcaccaattccaacagacaa	Protospacer
******************************.****

13. spacer 8.5|1192935|35|CP030138|CRT matches to position: 2178274-2178308, mismatch: 1, identity: 0.971

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggaacaccaatttctacagacaa	Protospacer
***************** *****************

14. spacer 8.6|1192840|18|CP030138|PILER-CR matches to position: 1192671-1192688, mismatch: 1, identity: 0.944

accaattccaacaaacaa	CRISPR spacer
accaattccaacagacaa	Protospacer
*************.****

15. spacer 9.1|1197088|26|CP030138|CRISPRCasFinder matches to position: 281585-281610, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cgggcccccaacatagaagctggcgg	Protospacer
**** *********************

16. spacer 9.1|1197088|26|CP030138|CRISPRCasFinder matches to position: 833867-833892, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
******************** *****

17. spacer 9.1|1197088|26|CP030138|CRISPRCasFinder matches to position: 870821-870846, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagctggcgg	Protospacer
*************.************

18. spacer 11.2|2549454|36|CP030138|CRT matches to position: 1861395-1861430, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

19. spacer 4.1|865419|29|CP030138|CRISPRCasFinder matches to position: 281717-281745, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

20. spacer 4.1|865419|29|CP030138|CRISPRCasFinder matches to position: 915326-915354, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

21. spacer 4.1|865419|29|CP030138|CRISPRCasFinder matches to position: 998347-998375, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

22. spacer 4.1|865419|29|CP030138|CRISPRCasFinder matches to position: 1196996-1197024, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttctttttgaaa	Protospacer
********.***************.****

23. spacer 4.1|865419|29|CP030138|CRISPRCasFinder matches to position: 1674836-1674864, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

24. spacer 4.1|865419|29|CP030138|CRISPRCasFinder matches to position: 2071076-2071104, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaa	Protospacer
********.***********.********

25. spacer 4.1|865419|29|CP030138|CRISPRCasFinder matches to position: 2740735-2740763, mismatch: 2, identity: 0.931

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaa	Protospacer
*******..********************

26. spacer 6.1|978707|26|CP030138|CRT matches to position: 833811-833836, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

27. spacer 6.1|978707|26|CP030138|CRT matches to position: 833923-833948, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

28. spacer 6.3|978821|26|CP030138|CRT matches to position: 404537-404562, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

29. spacer 8.5|1192935|35|CP030138|CRT matches to position: 824321-824355, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

30. spacer 8.5|1192935|35|CP030138|CRT matches to position: 870857-870891, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

31. spacer 8.5|1192935|35|CP030138|CRT matches to position: 2854331-2854365, mismatch: 2, identity: 0.943

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

32. spacer 9.1|1197088|26|CP030138|CRISPRCasFinder matches to position: 833811-833836, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*************.****** *****

33. spacer 9.1|1197088|26|CP030138|CRISPRCasFinder matches to position: 833923-833948, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*************.****** *****

34. spacer 11.1|2549398|33|CP030138|CRT matches to position: 1197045-1197077, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

35. spacer 11.1|2549398|33|CP030138|CRT matches to position: 1406501-1406533, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

36. spacer 11.1|2549398|33|CP030138|CRT matches to position: 1495778-1495810, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

37. spacer 11.1|2549398|33|CP030138|CRT matches to position: 2060332-2060364, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

38. spacer 11.1|2549398|33|CP030138|CRT matches to position: 2820119-2820151, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

39. spacer 11.2|2549454|36|CP030138|CRT matches to position: 281710-281745, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

40. spacer 11.2|2549454|36|CP030138|CRT matches to position: 1674836-1674871, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

41. spacer 11.2|2549454|36|CP030138|CRT matches to position: 2071076-2071111, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

42. spacer 11.3|2549513|33|CP030138|CRT matches to position: 870801-870833, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgactttccgccagcttctg	Protospacer
*********************.*.*********

43. spacer 11.3|2549513|33|CP030138|CRT matches to position: 1197045-1197077, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

44. spacer 11.3|2549513|33|CP030138|CRT matches to position: 1406501-1406533, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

45. spacer 11.3|2549513|33|CP030138|CRT matches to position: 2060332-2060364, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

46. spacer 11.3|2549513|33|CP030138|CRT matches to position: 2820119-2820151, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP030138_6	6.4\|978877\|53\|CP030138\|CRT	978877-978929	53	MG543995	Staphylococcus phage UPMK_1, partial genome	76246-76298	4	0.925
CP030138_6	6.3\|978821\|26\|CP030138\|CRT	978821-978846	26	NZ_CP022541	Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence	333735-333760	5	0.808
CP030138_4	4.1\|865419\|29\|CP030138\|CRISPRCasFinder	865419-865447	29	MN693281	Marine virus AFVG_25M371, complete genome	6448-6476	7	0.759
CP030138_8	8.1\|1192710\|35\|CP030138\|CRT	1192710-1192744	35	KY971610	Pseudomonas phage PspYZU05, complete genome	73937-73971	11	0.686

1. spacer 6.4|978877|53|CP030138|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************

2. spacer 6.3|978821|26|CP030138|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.*****************

3. spacer 4.1|865419|29|CP030138|CRISPRCasFinder matches to MN693281 (Marine virus AFVG_25M371, complete genome) position: , mismatch: 7, identity: 0.759

tgcattgtttgtagaatttcttttcgaaa	CRISPR spacer
tgcattgtttgtaggatttcttctaagtg	Protospacer
**************.*******.* .. .

4. spacer 8.1|1192710|35|CP030138|CRT matches to KY971610 (Pseudomonas phage PspYZU05, complete genome) position: , mismatch: 11, identity: 0.686

cagagagaaataggatcaccaatttcaacagacaa	CRISPR spacer
ccacatgaaatagggtcaccaatttgaacagcttt	Protospacer
* . . ********.********** ***** .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

340764 : 381811

Staphylococcus_phage(87.27%)

tail,terminase,holin,portal,capsid,head,integrase

attL 340654:340671|attR 383969:383986

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
340654:340671	attL	NA	NA	NA	NA
QAZ58256.1\|340764_341970_-\|integrase	site-specific integrase	Q4ZBP1	Staphylococcus_phage	8.5e-222	100.0
QAZ58257.1\|342080_342260_+	excisionase	A0EWN7	Staphylococcus_virus	8.3e-25	100.0
QAZ58258.1\|342239_343172_-	hypothetical protein	A0EX19	Staphylococcus_virus	4.1e-171	98.1
QAZ58259.1\|343203_343929_-	hypothetical protein	A0A0F6N4L7	Staphylococcus_phage	9.9e-125	100.0
QAZ58260.1\|343956_344631_-	ImmA/IrrE family metallo-endopeptidase	A0A0F6N3H6	Staphylococcus_phage	4.9e-126	100.0
QAZ58261.1\|344647_344980_-	XRE family transcriptional regulator	R4IH08	Staphylococcus_phage	4.1e-57	100.0
QAZ58262.1\|345242_345437_+	XRE family transcriptional regulator	A0A0F6N3M9	Staphylococcus_phage	1.1e-25	100.0
QAZ58263.1\|345436_346204_+	phage antirepressor Ant	A0A0F6N3N8	Staphylococcus_phage	1.1e-142	100.0
QAZ58264.1\|346204_346429_+	hypothetical protein	A0A0F6N4M2	Staphylococcus_phage	3.2e-34	100.0
QAZ58265.1\|346468_346687_+	hypothetical protein	Q4ZBN1	Staphylococcus_phage	4.3e-31	98.6
QAZ58266.1\|346716_346980_+	helix-turn-helix domain-containing protein	A0A2I6PEL8	Staphylococcus_phage	2.5e-46	100.0
QAZ58267.1\|346991_347153_+	DUF1270 family protein	Q4ZBM9	Staphylococcus_phage	3.8e-21	100.0
QAZ58268.1\|347244_347505_+	DUF1108 family protein	Q4ZBM7	Staphylococcus_phage	1.2e-43	100.0
QAZ58269.1\|347513_347777_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
QAZ60902.1\|347785_349729_+	ATPase	S4V9K6	Staphylococcus_phage	0.0e+00	100.0
QAZ58270.1\|349730_350651_+	recombinase	A0A1P8L6F6	Staphylococcus_phage	8.6e-166	99.7
QAZ58271.1\|350731_351349_+	MBL fold metallo-hydrolase	A0A1P8L6F7	Staphylococcus_phage	1.2e-86	100.0
QAZ58272.1\|351349_351820_+	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	5.7e-81	100.0
QAZ58273.1\|351849_352743_+	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
QAZ58274.1\|352749_352968_+	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
QAZ58275.1\|352976_353381_+	RusA family crossover junction endodeoxyribonuclease	A0A075M042	Staphylococcus_phage	8.4e-73	100.0
QAZ58276.1\|353765_354023_+	DUF3310 domain-containing protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
QAZ58277.1\|354019_354268_+	hypothetical protein	A0A0K1LL46	Staphylococcus_phage	1.2e-40	97.6
QAZ58278.1\|354280_354682_+	hypothetical protein	Q4ZAC1	Staphylococcus_virus	1.1e-69	100.0
QAZ58279.1\|354678_355026_+	hypothetical protein	D2JGL4	Staphylococcus_phage	5.9e-59	100.0
QAZ58280.1\|355022_355331_+	hypothetical protein	Q4ZD83	Staphylococcus_virus	6.2e-52	100.0
QAZ58281.1\|355323_355572_+	DUF1024 family protein	S4V7K0	Staphylococcus_phage	4.1e-38	100.0
QAZ58282.1\|355564_356101_+	dUTPase	A0A1X9H0S5	Staphylococcus_phage	7.2e-96	99.4
QAZ58283.1\|356137_356338_+	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	2.7e-16	77.6
QAZ58284.1\|356436_356673_+	hypothetical protein	A0A0N7E0U3	Staphylococcus_phage	1.3e-36	100.0
QAZ58285.1\|356665_356839_+	transcriptional regulator	R4IFL3	Staphylococcus_phage	1.1e-21	98.2
QAZ58286.1\|356839_357205_+	hypothetical protein	Q4ZBJ9	Staphylococcus_phage	3.6e-59	100.0
QAZ58287.1\|357205_357352_+	hypothetical protein	Q4ZBJ8	Staphylococcus_phage	7.5e-16	100.0
QAZ58288.1\|357375_357816_+	DUF1492 domain-containing protein	Q4ZBJ7	Staphylococcus_phage	4.1e-73	100.0
QAZ58289.1\|358126_358621_+\|terminase	terminase	R4IH30	Staphylococcus_phage	2.4e-74	99.4
QAZ58290.1\|358613_359822_+\|terminase	PBSX family phage terminase large subunit	R4IG95	Staphylococcus_phage	6.1e-236	100.0
QAZ58291.1\|359775_361254_+\|portal	phage portal protein	Q4ZB45	Staphylococcus_virus	3.3e-284	99.6
QAZ58292.1\|361192_362176_+\|head	phage head morphogenesis protein	A0A0N7E0U6	Staphylococcus_phage	6.2e-170	97.4
QAZ58293.1\|362177_362384_+	hypothetical protein	A0A0N9BB04	Staphylococcus_phage	3.2e-28	100.0
QAZ58294.1\|362488_363085_+	hypothetical protein	R4IG73	Staphylococcus_phage	5.6e-73	100.0
QAZ58295.1\|363105_363930_+\|capsid	N4-gp56 family major capsid protein	R4IH32	Staphylococcus_phage	5.6e-148	100.0
QAZ58296.1\|363946_364273_+	Rho termination protein	A0A0E3TAL3	Staphylococcus_phage	4.3e-51	100.0
QAZ58297.1\|364272_364587_+\|head,tail	phage head-tail adapter protein	R4IFL8	Staphylococcus_phage	4.0e-54	100.0
QAZ58298.1\|364579_364915_+\|head,tail	phage head-tail adapter protein	A0A2H4PQL0	Staphylococcus_phage	2.6e-59	99.1
QAZ58299.1\|364901_365315_+	HK97 gp10 family phage protein	R4IG77	Staphylococcus_phage	2.0e-77	100.0
QAZ58300.1\|365327_365765_+	DUF3168 domain-containing protein	A0A0E3T9M9	Staphylococcus_phage	2.1e-77	100.0
QAZ58301.1\|365751_366312_+\|tail	phage tail protein	A0A0H4ITY2	Staphylococcus_phage	5.9e-101	100.0
QAZ58302.1\|366373_366868_+	hypothetical protein	R4IFM1	Staphylococcus_phage	4.3e-87	100.0
QAZ58303.1\|366888_367230_+	hypothetical protein	A0A2H4PQL5	Staphylococcus_phage	3.5e-56	100.0
QAZ58304.1\|367232_370202_+\|terminase	terminase	R4IG82	Staphylococcus_phage	1.5e-280	99.7
QAZ58305.1\|370216_371152_+\|tail	phage tail protein	A7YGW1	Staphylococcus_virus	4.5e-178	98.7
QAZ58306.1\|376750_377128_+	DUF2977 domain-containing protein	A0A2H4PQW4	Staphylococcus_phage	6.9e-61	99.2
QAZ58307.1\|379671_380919_+\|tail	phage tail protein	Q4ZB96	Staphylococcus_virus	3.2e-203	96.6
QAZ58308.1\|380923_381319_+	hypothetical protein	A0A0H4IPB8	Staphylococcus_phage	3.3e-66	97.7
QAZ58309.1\|381373_381811_+\|holin	phage holin	A0A2H4PQP0	Staphylococcus_phage	4.1e-73	100.0
383969:383986	attR	NA	NA	NA	NA

DBSCAN-SWA_2

447947 : 463951

Streptococcus_phage(76.92%)

integrase

attL 443855:443869|attR 459784:459798

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
443855:443869	attL	NA	NA	NA	NA
QAZ58382.1\|447947_449414_+	IMP dehydrogenase	A0A1V0SHK8	Klosneuvirus	5.2e-96	40.5
QAZ58383.1\|449438_450980_+	GMP synthase (glutamine-hydrolyzing)	A0A1V0SH76	Hokovirus	1.2e-23	32.6
QAZ58384.1\|451047_452241_-\|integrase	site-specific integrase	A0A0S2MV79	Bacillus_phage	8.3e-44	34.2
QAZ58385.1\|452267_452468_-	DUF3173 domain-containing protein	NA	NA	NA	NA
QAZ58386.1\|452965_453196_-	helix-turn-helix domain-containing protein	A0A1S5SEX1	Streptococcus_phage	1.0e-27	78.9
QAZ58387.1\|453192_453675_-	sigma-70 family RNA polymerase sigma factor	A0A1S5SEW0	Streptococcus_phage	8.5e-48	68.6
QAZ58388.1\|453803_453914_-	hypothetical protein	NA	NA	NA	NA
QAZ58389.1\|454145_454499_+	XRE family transcriptional regulator	A0A1S5SFA6	Streptococcus_phage	2.2e-53	89.7
QAZ58390.1\|454556_454724_-	conjugal transfer protein	D0R0F6	Streptococcus_phage	2.3e-13	62.0
QAZ58391.1\|454842_456762_-	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	97.2
QAZ58392.1\|456777_456864_-	tetracycline resistance protein	NA	NA	NA	NA
QAZ60907.1\|457138_458077_-	conjugal transfer protein	A0A1S5SF22	Streptococcus_phage	1.1e-83	56.6
QAZ58393.1\|458084_459107_-	peptidase P60	A0A1S5SEZ8	Streptococcus_phage	2.4e-132	75.5
QAZ58394.1\|459103_461131_-	hypothetical protein	A0A1S5SF30	Streptococcus_phage	2.3e-195	65.5
459784:459798	attR	NA	NA	NA	NA
QAZ58395.1\|461127_463572_-	ATP/GTP-binding protein	A0A1S5SF64	Streptococcus_phage	0.0e+00	78.4
QAZ58396.1\|463555_463951_-	conjugal transfer protein	A0A1S5SEX7	Streptococcus_phage	5.9e-47	72.6

DBSCAN-SWA_3

470388 : 478555

Streptococcus_phage(85.71%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ58403.1\|470388_470889_-	antirestriction protein ArdA	A0A1S5SF25	Streptococcus_phage	1.7e-54	63.0
QAZ58404.1\|470949_471729_-	hypothetical protein	NA	NA	NA	NA
QAZ58405.1\|471770_471992_-	hypothetical protein	A0A1S5SEY0	Streptococcus_phage	3.1e-29	93.2
QAZ58406.1\|471988_472279_-	hypothetical protein	NA	NA	NA	NA
QAZ58407.1\|472275_473460_-	XRE family transcriptional regulator	A0A1S5SEX3	Streptococcus_phage	6.3e-161	68.1
QAZ58408.1\|473641_475045_-	DUF87 domain-containing protein	A0A1S5SFB5	Streptococcus_phage	7.5e-177	66.7
QAZ58409.1\|475066_475840_-	hypothetical protein	NA	NA	NA	NA
QAZ58410.1\|475849_476227_-	DUF961 domain-containing protein	A0A1S5SF96	Streptococcus_phage	9.6e-47	76.4
QAZ58411.1\|476247_476562_-	DUF961 domain-containing protein	A0A1S5SF38	Streptococcus_phage	1.2e-42	77.7
QAZ58412.1\|476761_478555_-	ATP-dependent helicase	E3T5J8	Cafeteria_roenbergensis_virus	6.9e-26	23.8

DBSCAN-SWA_4

802446 : 810266

Hokovirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ58711.1\|802446_803502_-	two-component sensor histidine kinase	A0A1V0SGX0	Hokovirus	2.1e-14	30.0
QAZ58712.1\|803501_804188_-	DNA-binding response regulator	NA	NA	NA	NA
QAZ58713.1\|804162_804636_-	DoxX family protein	NA	NA	NA	NA
QAZ58714.1\|804977_805418_-	hypothetical protein	NA	NA	NA	NA
QAZ58715.1\|805697_806282_-	hypothetical protein	NA	NA	NA	NA
QAZ58716.1\|806380_807094_-	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	6.5e-52	43.5
QAZ58717.1\|807097_807517_-	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	3.7e-07	28.7
QAZ58718.1\|807518_808187_-	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
QAZ58719.1\|808537_809131_+	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	4.4e-38	42.9
QAZ58720.1\|809114_810266_+	anthranilate synthase component I family protein	A0A0B5J984	Pandoravirus	1.6e-23	35.7

DBSCAN-SWA_5

822238 : 837025

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ58730.1\|822238_823297_+	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	7.9e-22	26.7
QAZ58731.1\|823647_824190_+	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
QAZ58732.1\|824361_824457_+	hypothetical protein	NA	NA	NA	NA
QAZ58733.1\|824869_825787_-	lipid kinase	A0A1V0SBJ0	Catovirus	3.7e-07	22.0
QAZ58734.1\|825877_825979_+	hypothetical protein	NA	NA	NA	NA
QAZ58735.1\|826056_827562_-	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
QAZ58736.1\|827627_827873_-	hypothetical protein	NA	NA	NA	NA
QAZ58737.1\|827902_828403_-	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
QAZ58738.1\|828422_829289_-	DMT family transporter	NA	NA	NA	NA
QAZ58739.1\|829673_829940_+	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
QAZ58740.1\|830089_830488_+	protein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
QAZ58741.1\|830450_832556_+	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.7
QAZ58742.1\|832673_833645_+	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
QAZ58743.1\|833777_833882_+	hypothetical protein	NA	NA	NA	NA
QAZ58744.1\|834158_834314_+	hypothetical protein	NA	NA	NA	NA
QAZ60924.1\|834352_835324_+	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	4.3e-139	78.9
QAZ58745.1\|835310_836267_+	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	1.2e-05	57.8
QAZ58746.1\|836263_837025_+	ATP-binding cassette domain-containing protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	8.5e-18	31.6

DBSCAN-SWA_6

916822 : 931630

Staphylococcus_phage(89.47%)

terminase,coat,integrase

attL 919357:919375|attR 933919:933937

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ58826.1\|916822_917848_+	methionine import ATP-binding protein MetN 2	G9BWD6	Planktothrix_phage	1.2e-27	36.8
QAZ58827.1\|917840_918536_+	ABC transporter permease	NA	NA	NA	NA
QAZ58828.1\|918553_919375_+	MetQ/NlpA family ABC transporter substrate-binding protein	NA	NA	NA	NA
919357:919375	attL	NA	NA	NA	NA
QAZ58829.1\|919518_920739_-\|integrase	site-specific integrase	Q4ZE80	Staphylococcus_phage	3.5e-98	47.3
QAZ58830.1\|920826_921555_-	exotoxin	A0EX09	Staphylococcus_phage	2.4e-22	32.3
QAZ60927.1\|921578_922307_-	exotoxin	A0EX09	Staphylococcus_phage	7.9e-29	35.4
QAZ58831.1\|922481_923216_-	XRE family transcriptional regulator	Q4ZE79	Staphylococcus_phage	8.5e-132	98.4
QAZ58832.1\|923365_923578_+	XRE family transcriptional regulator	Q4ZE78	Staphylococcus_phage	3.4e-33	98.6
QAZ58833.1\|923578_923851_+	helix-turn-helix domain-containing protein	Q4ZE77	Staphylococcus_phage	3.4e-46	100.0
QAZ60928.1\|923862_924009_+	pathogenicity island protein	NA	NA	NA	NA
QAZ58834.1\|924001_924211_+	pathogenicity island protein	Q4ZE76	Staphylococcus_phage	7.7e-30	95.7
QAZ58835.1\|924213_924507_+	DUF1474 family protein	A0A1W6JQH0	Staphylococcus_phage	1.8e-24	61.8
QAZ58836.1\|924594_925464_+	mobile element-associated protein	A0A1W6JQL5	Staphylococcus_phage	4.2e-162	96.9
QAZ58837.1\|925480_926938_+	virulence-associated protein E	A0A1W6JQD6	Staphylococcus_phage	1.4e-279	96.7
QAZ58838.1\|927239_927602_+	pathogenicity island protein	A0A1W6JQD5	Staphylococcus_phage	2.9e-64	96.7
QAZ58839.1\|927603_927888_+	pathogenicity island protein	A0A1W6JQE4	Staphylococcus_phage	1.6e-49	98.9
QAZ58840.1\|927884_928526_+	pathogenicity island protein	Q4ZE67	Staphylococcus_phage	2.7e-113	94.8
QAZ58841.1\|928974_929316_+	pathogenicity island protein	Q4ZE66	Staphylococcus_phage	1.6e-56	98.2
QAZ58842.1\|929327_929906_+	pathogenicity island protein	A0A2H4JBG0	uncultured_Caudovirales_phage	3.3e-30	40.0
QAZ60929.1\|929923_930142_+	hypothetical protein	NA	NA	NA	NA
QAZ58843.1\|930192_930720_+\|coat	spore coat protein	Q4ZE87	Staphylococcus_phage	1.6e-87	96.0
QAZ60930.1\|930851_931064_+	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	3.2e-31	97.1
QAZ58844.1\|931060_931630_+\|terminase	terminase small subunit	A0A1W6JQF0	Staphylococcus_phage	1.2e-101	98.4
933919:933937	attR	NA	NA	NA	NA

DBSCAN-SWA_7

1023813 : 1078680

Streptococcus_phage(28.57%)

protease,holin,tRNA,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ58935.1\|1023813_1024803_-\|tRNA	tryptophan--tRNA ligase	NA	NA	NA	NA
QAZ58936.1\|1025097_1025493_+	transcriptional regulator Spx	NA	NA	NA	NA
QAZ58937.1\|1025863_1026583_+	adaptor protein MecA	NA	NA	NA	NA
QAZ58938.1\|1026703_1026961_+	competence protein	NA	NA	NA	NA
QAZ58939.1\|1026966_1027689_+	competence protein	NA	NA	NA	NA
QAZ58940.1\|1027736_1029545_+	oligoendopeptidase F	A0A1X9I5X5	Streptococcus_phage	9.3e-47	24.4
QAZ58941.1\|1030004_1030811_-	DsbA family protein	NA	NA	NA	NA
QAZ58942.1\|1030833_1031199_-	globin	NA	NA	NA	NA
QAZ58943.1\|1031302_1031896_-	CYTH domain-containing protein	NA	NA	NA	NA
QAZ58944.1\|1032081_1032429_+	hypothetical protein	NA	NA	NA	NA
QAZ58945.1\|1032445_1033081_+	GTP pyrophosphokinase family protein	NA	NA	NA	NA
QAZ58946.1\|1033097_1033907_+	NAD(+) kinase	NA	NA	NA	NA
QAZ58947.1\|1033903_1034758_+	RluA family pseudouridine synthase	NA	NA	NA	NA
QAZ58948.1\|1034778_1036164_+	magnesium transporter	NA	NA	NA	NA
QAZ58949.1\|1036173_1038018_+	sodium:proton antiporter	NA	NA	NA	NA
QAZ58950.1\|1038295_1039066_+	enoyl-[acyl-carrier-protein] reductase FabI	NA	NA	NA	NA
QAZ58951.1\|1039260_1040346_-	AI-2E family transporter	NA	NA	NA	NA
QAZ58952.1\|1040687_1042256_+	alanine:cation symporter family protein	NA	NA	NA	NA
QAZ58953.1\|1042397_1043156_+	esterase family protein	NA	NA	NA	NA
QAZ58954.1\|1043349_1043859_+	hypothetical protein	NA	NA	NA	NA
QAZ58955.1\|1043971_1045180_-	MFS transporter	NA	NA	NA	NA
QAZ58956.1\|1045139_1046315_-	diacylglycerol beta-glucosyltransferase	NA	NA	NA	NA
QAZ58957.1\|1046747_1048229_+	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--L- lysine ligase	NA	NA	NA	NA
QAZ58958.1\|1048212_1048473_+	hypothetical protein	NA	NA	NA	NA
QAZ58959.1\|1048472_1050035_+	peptide chain release factor 3	A0A1S5SF82	Streptococcus_phage	4.9e-36	28.2
QAZ58960.1\|1050336_1051140_+	hypothetical protein	S5MAL1	Bacillus_phage	1.6e-30	40.5
QAZ58961.1\|1051358_1053683_+	PDZ domain-containing protein	W5SAB9	Pithovirus	2.8e-11	27.4
QAZ58962.1\|1053699_1055058_+	TrkH family potassium uptake protein	NA	NA	NA	NA
QAZ58963.1\|1055196_1056708_+	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
QAZ58964.1\|1057194_1057764_-	competence protein ComK	NA	NA	NA	NA
QAZ58965.1\|1057973_1058192_+	IDEAL domain-containing protein	NA	NA	NA	NA
QAZ58966.1\|1058272_1059259_-	lipoate--protein ligase	NA	NA	NA	NA
QAZ58967.1\|1059457_1059634_+	DUF2187 domain-containing protein	NA	NA	NA	NA
QAZ58968.1\|1059648_1060251_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QAZ60932.1\|1060551_1060629_+\|holin	putative holin-like toxin	NA	NA	NA	NA
QAZ58969.1\|1061167_1061269_+	hypothetical protein	NA	NA	NA	NA
QAZ60933.1\|1061278_1061551_+\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
QAZ58970.1\|1061594_1063559_+\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
QAZ58971.1\|1063561_1063882_+	YxeA family protein	NA	NA	NA	NA
QAZ58972.1\|1063878_1064520_+	ATP-binding cassette domain-containing protein	G9BWD6	Planktothrix_phage	2.2e-19	33.7
QAZ58973.1\|1064607_1064898_-	hypothetical protein	NA	NA	NA	NA
QAZ58974.1\|1065176_1065464_+	hypothetical protein	NA	NA	NA	NA
QAZ58975.1\|1065469_1066951_+	glycosyltransferase	NA	NA	NA	NA
QAZ58976.1\|1067039_1067396_-	DoxX family protein	NA	NA	NA	NA
QAZ58977.1\|1067872_1068832_+	ABC transporter substrate-binding protein	NA	NA	NA	NA
QAZ58978.1\|1068877_1069009_-	hypothetical protein	NA	NA	NA	NA
QAZ58979.1\|1069072_1069363_-	NINE protein	A0A060AN66	Enterococcus_phage	7.5e-07	38.0
QAZ58980.1\|1069452_1070004_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
QAZ58981.1\|1070055_1070994_-	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
QAZ58982.1\|1071144_1071249_+	hypothetical protein	NA	NA	NA	NA
QAZ58983.1\|1071325_1072537_+	isochorismate synthase	NA	NA	NA	NA
QAZ58984.1\|1072523_1074197_+	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylate synthase	NA	NA	NA	NA
QAZ58985.1\|1074183_1074987_+	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
QAZ58986.1\|1074979_1075801_+	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
QAZ58987.1\|1076039_1076369_-	staphostatin B	NA	NA	NA	NA
QAZ58988.1\|1076406_1077588_-\|protease	cysteine protease staphopain B	NA	NA	NA	NA
QAZ58989.1\|1077669_1078680_-\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	6.2e-16	32.3

DBSCAN-SWA_8

1097574 : 1106047

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ59006.1\|1097574_1098057_+	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	6.2e-22	44.7
QAZ59007.1\|1098043_1099168_+	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
QAZ59008.1\|1099171_1099876_+	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	7.3e-48	42.1
QAZ59009.1\|1099875_1100139_+	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
QAZ59010.1\|1100140_1100812_+	phosphoribosylformylglycinamidine synthase subunit PurQ	NA	NA	NA	NA
QAZ59011.1\|1100804_1102994_+	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	1.0e-140	39.7
QAZ59012.1\|1102972_1104457_+	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
QAZ59013.1\|1104449_1105478_+	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	1.3e-61	41.4
QAZ59014.1\|1105480_1106047_+	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	6.1e-29	40.1

DBSCAN-SWA_9

1363102 : 1370859

Staphylococcus_phage(71.43%)

transposase,head

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ59254.1\|1363102_1363300_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	1.7e-10	48.4
QAZ59255.1\|1363987_1364212_+	hypothetical protein	A0A1W6JNK0	Staphylococcus_phage	4.3e-18	71.0
QAZ59256.1\|1364505_1364712_+	hypothetical protein	A0A2H4PQT0	Staphylococcus_phage	1.3e-13	59.7
QAZ59257.1\|1365412_1365523_+	hypothetical protein	NA	NA	NA	NA
QAZ59258.1\|1365950_1366136_+	hypothetical protein	A0A0F6N3H3	Staphylococcus_phage	2.4e-19	78.7
QAZ59259.1\|1366647_1366752_+	hypothetical protein	NA	NA	NA	NA
QAZ59260.1\|1366706_1366880_+	hypothetical protein	NA	NA	NA	NA
QAZ59261.1\|1366880_1367132_+	hypothetical protein	NA	NA	NA	NA
QAZ59262.1\|1367177_1367762_+\|head	phage head morphogenesis protein	Q4ZE35	Staphylococcus_virus	2.0e-30	72.0
QAZ59263.1\|1367970_1369143_+\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
QAZ59264.1\|1369214_1369463_+	hypothetical protein	NA	NA	NA	NA
QAZ59265.1\|1369497_1369620_+	hypothetical protein	NA	NA	NA	NA
QAZ59266.1\|1369739_1370006_+	hypothetical protein	NA	NA	NA	NA
QAZ59267.1\|1370002_1370140_+	hypothetical protein	NA	NA	NA	NA
QAZ59268.1\|1370568_1370859_+	hypothetical protein	S6B1L4	Thermus_phage	5.4e-05	35.1

DBSCAN-SWA_10

1646458 : 1654770

Staphylococcus_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ59523.1\|1646458_1647244_-	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3
QAZ59524.1\|1647369_1648260_-	endonuclease	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
QAZ59525.1\|1648269_1649616_-	DEAD/DEAH box family ATP-dependent RNA helicase	A0A1V0SIR5	Klosneuvirus	5.3e-55	33.7
QAZ59526.1\|1649729_1650830_-	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
QAZ59527.1\|1650832_1651510_-\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
QAZ59528.1\|1651640_1652747_-	RNA polymerase sigma factor SigA	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
QAZ59529.1\|1652970_1654770_-	DNA primase	A0A0K1LMQ9	Caulobacter_phage	4.6e-54	36.0

DBSCAN-SWA_11

1725240 : 1734283

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ59599.1\|1725240_1725759_-	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5
QAZ59600.1\|1725780_1728054_-	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	1.2e-62	28.8
QAZ59601.1\|1728256_1730536_-	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
QAZ59602.1\|1730810_1731071_-	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
QAZ59603.1\|1731089_1732229_-\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
QAZ59604.1\|1732251_1733277_-\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
QAZ59605.1\|1733278_1734283_-	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1

DBSCAN-SWA_12

1873677 : 1944536

Staphylococcus_phage(94.74%)

protease,transposase,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ59728.1\|1873677_1876095_-\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.2
QAZ59729.1\|1876382_1877564_-	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	5.6e-218	100.0
QAZ59730.1\|1877673_1878627_+	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
QAZ59731.1\|1878623_1879187_+	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	8.3e-103	99.5
QAZ59732.1\|1879306_1879708_-	MarR family transcriptional regulator	NA	NA	NA	NA
QAZ59733.1\|1881286_1882114_-	alpha/beta hydrolase	NA	NA	NA	NA
QAZ59734.1\|1882116_1882236_-	hypothetical protein	NA	NA	NA	NA
QAZ59735.1\|1882247_1882439_-	hypothetical protein	NA	NA	NA	NA
QAZ59736.1\|1882347_1883349_+	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7
QAZ59737.1\|1883470_1883935_-	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
QAZ59738.1\|1883947_1885129_-	bifunctional 3,4-dihydroxy-2-butanone-4-phosphate synthase/GTP cyclohydrolase II	A0A2H4PQS2	Staphylococcus_phage	1.6e-225	99.2
QAZ59739.1\|1885139_1885772_-	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
QAZ60952.1\|1885778_1886810_-	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.8e-197	99.4
QAZ59740.1\|1887302_1888805_-	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
QAZ59741.1\|1889327_1889642_+	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	2.0e-53	100.0
QAZ59742.1\|1889641_1890934_+	arsenical efflux pump membrane protein ArsB	A0A2H4PQU3	Staphylococcus_phage	5.0e-228	99.5
QAZ59743.1\|1890951_1891347_+	protein ArsC	A0A2H4PQT9	Staphylococcus_phage	6.3e-73	100.0
QAZ59744.1\|1891641_1892496_-	autolysin	Q4ZCC7	Staphylococcus_virus	9.8e-39	38.6
QAZ59745.1\|1892771_1892996_-	hypothetical protein	NA	NA	NA	NA
QAZ59746.1\|1893194_1893665_+	RNA polymerase sigma factor SigS	A0A2H4PQT5	Staphylococcus_phage	1.0e-82	99.4
QAZ59747.1\|1893777_1894221_+	competence protein ComK	NA	NA	NA	NA
QAZ59748.1\|1894207_1894651_-	hypothetical protein	A0A2H4PQT8	Staphylococcus_phage	3.0e-55	85.0
QAZ59749.1\|1894946_1895582_+\|protease	CPBP family intramembrane metalloprotease SdpA	NA	NA	NA	NA
QAZ59750.1\|1896021_1896735_-	transaldolase	M1PR54	Cyanophage	5.5e-19	35.3
QAZ59751.1\|1896994_1897297_+	hypothetical protein	NA	NA	NA	NA
QAZ59752.1\|1897552_1897918_+	fluoride efflux transporter CrcB	A0A2H4PQR0	Staphylococcus_phage	3.6e-59	100.0
QAZ59753.1\|1897914_1898268_+	camphor resistance protein CrcB	A0A2H4PQQ7	Staphylococcus_phage	1.0e-21	99.1
QAZ59754.1\|1900331_1901183_-	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	7.0e-154	97.8
QAZ59755.1\|1901394_1902303_-	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	3.2e-136	98.7
QAZ59756.1\|1902427_1903621_-	S-adenosylmethionine synthase	A0A2H4PQS6	Staphylococcus_phage	1.9e-218	99.7
QAZ59757.1\|1903991_1905584_+	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	100.0
QAZ59758.1\|1905719_1906205_-\|transposase	IS200/IS605 family transposase	A0A1P8BMC0	Lactococcus_phage	4.9e-19	35.4
QAZ60953.1\|1906579_1907326_-	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	7.1e-142	98.4
QAZ59759.1\|1907330_1907804_-	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	4.7e-83	98.1
QAZ59760.1\|1907869_1908127_+	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	7.2e-46	100.0
QAZ59761.1\|1908123_1909125_-	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	4.8e-186	97.6
QAZ59762.1\|1909129_1910608_-	2-succinylbenzoate-CoA ligase	A0A2H4PQM9	Staphylococcus_phage	2.0e-281	97.0
QAZ60954.1\|1910766_1911222_-	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.0e-79	98.6
QAZ59763.1\|1911524_1912175_+	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	2.7e-44	88.4
QAZ59764.1\|1912255_1913251_+	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	7.1e-73	96.4
QAZ59765.1\|1913326_1913953_+	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	7.1e-79	82.7
QAZ59766.1\|1913993_1914338_+	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	6.3e-53	92.0
QAZ59767.1\|1914435_1914987_+	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	1.0e-20	94.1
QAZ59768.1\|1915204_1915846_-	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	2.6e-76	93.2
QAZ59769.1\|1915959_1916145_-	hypothetical protein	NA	NA	NA	NA
QAZ59770.1\|1916146_1916323_-	hypothetical protein	NA	NA	NA	NA
QAZ59771.1\|1916333_1916717_-	hypothetical protein	NA	NA	NA	NA
QAZ59772.1\|1916908_1917118_-\|transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	1.4e-31	100.0
QAZ59773.1\|1917320_1917464_-	hypothetical protein	A0A2H4PQU1	Staphylococcus_phage	6.4e-20	100.0
QAZ59774.1\|1917666_1917762_+	type I toxin-antitoxin system Fst family toxin	NA	NA	NA	NA
QAZ59775.1\|1917884_1917986_+	hypothetical protein	NA	NA	NA	NA
QAZ60955.1\|1918333_1918693_-	DUF1433 domain-containing protein	NA	NA	NA	NA
QAZ59776.1\|1919231_1923344_-	ATP-binding protein	A0A2H4PQT3	Staphylococcus_phage	0.0e+00	99.9
QAZ59777.1\|1924193_1925393_-	restriction endonuclease subunit S	A0A2H4PQP5	Staphylococcus_phage	5.5e-229	99.7
QAZ59778.1\|1927104_1927239_-	hypothetical protein	NA	NA	NA	NA
QAZ59779.1\|1927303_1928023_-\|protease	serine protease SplF	A0A2H4PQP1	Staphylococcus_phage	1.1e-131	100.0
QAZ59780.1\|1928173_1928890_-\|protease	serine protease SplE	A0A2H4PQN5	Staphylococcus_phage	1.1e-131	100.0
QAZ59781.1\|1928991_1929099_+	hypothetical protein	NA	NA	NA	NA
QAZ59782.1\|1929047_1929767_-\|protease	serine protease SplD	A0A2H4PQP9	Staphylococcus_phage	4.6e-130	99.6
QAZ59783.1\|1929887_1930607_-\|protease	serine protease SplC	A0A2H4PQP7	Staphylococcus_phage	1.2e-130	99.2
QAZ59784.1\|1930664_1931387_-\|protease	serine protease SplB	A0A2H4PQN0	Staphylococcus_phage	2.4e-131	99.6
QAZ59785.1\|1931511_1932219_-\|protease	serine protease SplA	A0A2H4PQN3	Staphylococcus_phage	2.6e-130	100.0
QAZ59786.1\|1932654_1932873_-	hypothetical protein	NA	NA	NA	NA
QAZ59787.1\|1933182_1933749_+	DUF4888 domain-containing protein	A0A2H4PQH6	Staphylococcus_phage	3.3e-99	100.0
QAZ59788.1\|1934222_1934921_-	BsaG protein	A0A2H4PQH0	Staphylococcus_phage	3.8e-113	94.4
QAZ59789.1\|1934917_1935679_-	lantibiotic immunity ABC transporter MutE/EpiE family permease subunit	A0A2H4PQH2	Staphylococcus_phage	4.4e-131	100.0
QAZ59790.1\|1935675_1936368_-	ATP-binding cassette domain-containing protein	A0A2H4PQG7	Staphylococcus_phage	6.2e-124	100.0
QAZ59791.1\|1936390_1937764_-	peptidase S8	A0A2H4PQH1	Staphylococcus_phage	2.9e-258	100.0
QAZ59792.1\|1937773_1938292_-	enterotoxin	A0A2H4PQG9	Staphylococcus_phage	2.0e-95	100.0
QAZ59793.1\|1938307_1939552_-	lanthionine synthetase	A0A2H4PQH9	Staphylococcus_phage	5.1e-238	100.0
QAZ59794.1\|1939544_1941287_-	lantibiotic dehydratase	A0A2H4PQG8	Staphylococcus_phage	2.5e-259	54.1
QAZ59795.1\|1941351_1941495_-	gallidermin/nisin family lantibiotic	A0A2H4PQH4	Staphylococcus_phage	5.3e-14	80.9
QAZ59796.1\|1941938_1942130_+	hypothetical protein	NA	NA	NA	NA
QAZ59797.1\|1942231_1942375_-	gallidermin/nisin family lantibiotic	NA	NA	NA	NA
QAZ59798.1\|1942615_1943599_-	bi-component leukocidin LukED subunit D	A0A2H4PQH7	Staphylococcus_phage	2.3e-185	99.1
QAZ59799.1\|1943600_1944536_-	beta-channel forming cytolysin	A0A2H4PQI5	Staphylococcus_phage	5.1e-174	99.7

DBSCAN-SWA_13

1975196 : 2050298

Staphylococcus_phage(77.42%)

tail,transposase,holin,terminase,portal,capsid,tRNA,head,integrase

attL 2018442:2018459|attR 2053762:2053779

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ59830.1\|1975196_1975667_-\|tRNA	tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL	NA	NA	NA	NA
QAZ59831.1\|1975671_1976814_-	epoxyqueuosine reductase	NA	NA	NA	NA
QAZ59832.1\|1976949_1977678_-	amino acid ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	1.0e-36	42.7
QAZ59833.1\|1977664_1979122_-	ABC transporter permease subunit	NA	NA	NA	NA
QAZ59834.1\|1979379_1980441_-	PTS transporter subunit IIC	NA	NA	NA	NA
QAZ59835.1\|1980933_1982295_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
QAZ59836.1\|1982270_1982384_+	hypothetical protein	NA	NA	NA	NA
QAZ59837.1\|1990796_1991243_-	transcriptional repressor	NA	NA	NA	NA
QAZ59838.1\|1991339_1992290_-	hydroxyacid dehydrogenase	NA	NA	NA	NA
QAZ59839.1\|1992295_1992751_-	thioredoxin-dependent thiol peroxidase	NA	NA	NA	NA
QAZ59840.1\|1992831_1994121_+	glutamate-1-semialdehyde 2,1-aminomutase	NA	NA	NA	NA
QAZ60956.1\|1994413_1995508_+	aromatic acid exporter family protein	NA	NA	NA	NA
QAZ59841.1\|1995597_1995690_-	hypothetical protein	NA	NA	NA	NA
QAZ59842.1\|1995698_1997435_-	SAV1866 family putative multidrug efflux ABC transporter	W8CYL7	Bacillus_phage	1.7e-53	30.4
QAZ59843.1\|1997725_1998268_-	DUF402 domain-containing protein	NA	NA	NA	NA
QAZ59844.1\|1998569_1999607_-	A/G-specific adenine glycosylase	NA	NA	NA	NA
QAZ59845.1\|1999758_2000736_+	metal-dependent hydrolase	NA	NA	NA	NA
QAZ59846.1\|2000839_2001070_+	hypothetical protein	NA	NA	NA	NA
QAZ59847.1\|2000996_2001833_-	hypothetical protein	NA	NA	NA	NA
QAZ59848.1\|2001841_2003359_-	ABC transporter ATP-binding protein	NA	NA	NA	NA
QAZ59849.1\|2003373_2003688_-	DUF1811 family protein	NA	NA	NA	NA
QAZ59850.1\|2003665_2004484_-	regulatory protein RecX	NA	NA	NA	NA
QAZ59851.1\|2004744_2005554_-	monofunctional glycosyltransferase	NA	NA	NA	NA
QAZ59852.1\|2005894_2006410_-	type 1 glutamine amidotransferase	NA	NA	NA	NA
QAZ59853.1\|2006540_2006702_-	hypothetical protein	NA	NA	NA	NA
QAZ60957.1\|2007048_2007129_+	hypothetical protein	NA	NA	NA	NA
QAZ59854.1\|2007451_2007652_-	hypothetical protein	W5R9N2	Staphylococcus_phage	3.7e-29	100.0
QAZ59855.1\|2007638_2007749_-	hypothetical protein	W5R8J7	Staphylococcus_phage	3.8e-12	97.2
QAZ59856.1\|2007819_2007972_-	hypothetical protein	A0A0F6N3H2	Staphylococcus_phage	3.1e-20	100.0
QAZ59857.1\|2008214_2009660_-	CHAP domain-containing protein	Q08JW9	Staphylococcus_phage	1.7e-293	98.8
QAZ59858.1\|2009640_2010078_-\|holin	phage holin	A0A2H4PQP0	Staphylococcus_phage	4.1e-73	100.0
QAZ59859.1\|2010133_2010529_-	hypothetical protein	A0A0H4IPB8	Staphylococcus_phage	3.3e-66	97.7
QAZ59860.1\|2010540_2011770_-\|tail	phage tail protein	Q4ZB96	Staphylococcus_virus	1.5e-197	95.3
QAZ59861.1\|2013791_2014091_-	DUF2951 domain-containing protein	Q4ZBP8	Staphylococcus_phage	1.3e-46	100.0
QAZ60958.1\|2014131_2014305_-	XkdX family protein	B2ZZ00	Staphylococcus_phage	1.0e-27	100.0
QAZ59862.1\|2014314_2014692_-	DUF2977 domain-containing protein	A0A2H4PQW4	Staphylococcus_phage	6.9e-61	99.2
QAZ59863.1\|2014691_2016515_-	DUF2479 domain-containing protein	A0A0E3XBS0	Staphylococcus_phage	0.0e+00	100.0
QAZ59864.1\|2016514_2018413_-	hypothetical protein	Q4ZBQ2	Staphylococcus_phage	0.0e+00	99.1
2018442:2018459	attL	NA	NA	NA	NA
QAZ59865.1\|2020318_2021254_-\|tail	phage tail protein	A7YGW1	Staphylococcus_virus	4.5e-178	98.7
QAZ59866.1\|2024530_2025079_-	hypothetical protein	Q4ZBQ7	Staphylococcus_phage	2.2e-68	84.5
QAZ59867.1\|2025145_2025703_-\|tail	phage tail protein	Q4ZBQ8	Staphylococcus_phage	8.2e-103	100.0
QAZ59868.1\|2025703_2026129_-	DUF3168 domain-containing protein	Q4ZBQ9	Staphylococcus_phage	5.5e-75	100.0
QAZ59869.1\|2026141_2026555_-	HK97 gp10 family phage protein	A0A0N9BAY5	Staphylococcus_phage	1.1e-75	100.0
QAZ59870.1\|2026541_2026877_-\|head,tail	phage head-tail adapter protein	Q4ZBR2	Staphylococcus_phage	8.8e-60	100.0
QAZ59871.1\|2026888_2027239_-\|head,tail	phage head-tail adapter protein	A0A0N6WMR1	Staphylococcus_phage	4.1e-60	100.0
QAZ59872.1\|2027399_2028314_-\|capsid	phage major capsid protein	A0A0H3U2U7	Staphylococcus_phage	1.2e-170	100.0
QAZ59873.1\|2028330_2028915_-	DUF4355 domain-containing protein	A0A2H4JDY6	uncultured_Caudovirales_phage	7.3e-78	100.0
QAZ59874.1\|2029017_2029224_-	hypothetical protein	A0A2H4JAK3	uncultured_Caudovirales_phage	1.4e-28	100.0
QAZ59875.1\|2029225_2030179_-\|head	phage head morphogenesis protein	A0A2H4JAL4	uncultured_Caudovirales_phage	2.3e-177	99.7
QAZ59876.1\|2030147_2031572_-\|portal	phage portal protein	Q4ZBZ7	Staphylococcus_virus	6.2e-272	100.0
QAZ59877.1\|2031568_2032792_-\|terminase	PBSX family phage terminase large subunit	A0A0N9BAX9	Staphylococcus_phage	2.2e-241	99.8
QAZ59878.1\|2032784_2033279_-\|terminase	terminase	A0A0N9BAX3	Staphylococcus_phage	3.4e-84	100.0
QAZ59879.1\|2033447_2033702_+	hypothetical protein	Q4ZB48	Staphylococcus_virus	7.0e-25	85.7
QAZ59880.1\|2033631_2034033_-	hypothetical protein	A0A2H4PQK5	Staphylococcus_phage	5.6e-69	100.0
QAZ59881.1\|2034033_2034207_-	transcriptional regulator	Q4ZBK0	Staphylococcus_phage	6.4e-22	100.0
QAZ59882.1\|2034203_2034599_-	hypothetical protein	A7TWI1	Staphylococcus_phage	4.8e-65	98.5
QAZ59883.1\|2034582_2034819_-	hypothetical protein	Q4ZDP0	Staphylococcus_virus	2.8e-36	100.0
QAZ59884.1\|2034917_2035118_-	DUF1381 domain-containing protein	A0A0H3U2R7	Staphylococcus_phage	2.7e-16	77.6
QAZ59885.1\|2035154_2035691_-	dUTPase	A0A1X9H0S5	Staphylococcus_phage	7.2e-96	99.4
QAZ59886.1\|2035683_2035932_-	DUF1024 family protein	S4V7K0	Staphylococcus_phage	4.1e-38	100.0
QAZ59887.1\|2035924_2036233_-	hypothetical protein	Q4ZD83	Staphylococcus_virus	6.2e-52	100.0
QAZ59888.1\|2036229_2036577_-	hypothetical protein	D2JGL4	Staphylococcus_phage	5.9e-59	100.0
QAZ59889.1\|2036573_2036975_-	hypothetical protein	Q4ZAC1	Staphylococcus_virus	1.1e-69	100.0
QAZ59890.1\|2036987_2037236_-	hypothetical protein	A0A0K1LL46	Staphylococcus_phage	1.2e-40	97.6
QAZ59891.1\|2037232_2037490_-	DUF3310 domain-containing protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
QAZ60959.1\|2037874_2038279_-	RusA family crossover junction endodeoxyribonuclease	A0A075M042	Staphylococcus_phage	8.4e-73	100.0
QAZ59892.1\|2038510_2039404_-	DnaD domain protein	A0A1P8L6F0	Staphylococcus_phage	3.2e-141	100.0
QAZ59893.1\|2039433_2039904_-	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	5.7e-81	100.0
QAZ59894.1\|2039904_2040522_-	MBL fold metallo-hydrolase	A0A1P8L6F7	Staphylococcus_phage	1.2e-86	100.0
QAZ59895.1\|2040602_2041523_-	recombinase	A0A1P8L6F6	Staphylococcus_phage	8.6e-166	99.7
QAZ59896.1\|2041524_2043468_-	ATPase	S4V9K6	Staphylococcus_phage	0.0e+00	100.0
QAZ59897.1\|2043476_2043740_-	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
QAZ59898.1\|2043748_2044009_-	DUF1108 family protein	A0A1P8L6F5	Staphylococcus_phage	5.8e-43	97.7
QAZ59899.1\|2044013_2044316_-	DUF2482 family protein	W5RAK4	Staphylococcus_phage	7.7e-47	96.0
QAZ59900.1\|2044409_2044571_-	DUF1270 family protein	A0A2I6PD92	Staphylococcus_phage	4.3e-20	96.2
QAZ59901.1\|2044563_2044785_-	hypothetical protein	A0A1X9H0Q4	Staphylococcus_phage	1.5e-31	100.0
QAZ59902.1\|2044855_2045086_+	hypothetical protein	C8CGY3	Staphylococcus_phage	2.3e-35	100.0
QAZ59903.1\|2045261_2046005_-	oxidoreductase	S4SW96	Staphylococcus_phage	2.3e-137	100.0
QAZ59904.1\|2046064_2046547_+	hypothetical protein	A0A0N9BAX2	Staphylococcus_phage	1.1e-82	100.0
QAZ59905.1\|2046647_2046827_-	hypothetical protein	A0A0N9BAV3	Staphylococcus_phage	1.7e-25	100.0
QAZ59906.1\|2046845_2047076_-	XRE family transcriptional regulator	A0A0N9BAY2	Staphylococcus_phage	9.1e-32	90.7
QAZ59907.1\|2047227_2047542_+	XRE family transcriptional regulator	A0A0N9BAW4	Staphylococcus_phage	9.8e-53	100.0
QAZ59908.1\|2047554_2048019_+	toxin	A0A0N9BAX8	Staphylococcus_phage	4.6e-83	98.1
QAZ59909.1\|2048050_2048980_+	hypothetical protein	A0EX19	Staphylococcus_virus	1.0e-166	96.8
QAZ59910.1\|2048959_2049139_-	excisionase	Q4ZBP0	Staphylococcus_phage	3.7e-25	100.0
QAZ59911.1\|2049251_2050298_+\|integrase	site-specific integrase	Q4ZB10	Staphylococcus_virus	5.5e-201	100.0
2053762:2053779	attR	NA	NA	NA	NA

DBSCAN-SWA_14

2085766 : 2175975

112

Staphylococcus_phage(92.31%)

tail,terminase,holin,portal,capsid,protease,head,integrase

attL 2134727:2134744|attR 2160763:2160780

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ59947.1\|2085766_2086933_+\|protease	cysteine protease staphopain A	NA	NA	NA	NA
QAZ59948.1\|2086963_2087290_+	staphostatin A	NA	NA	NA	NA
QAZ59949.1\|2087581_2087755_-	NETI motif-containing protein	NA	NA	NA	NA
QAZ59950.1\|2087735_2088338_-	DUF2179 domain-containing protein	NA	NA	NA	NA
QAZ59951.1\|2088608_2089430_-	NAD(+) synthetase	G3MA24	Bacillus_virus	1.8e-69	52.7
QAZ59952.1\|2089422_2090892_-	nicotinate phosphoribosyltransferase	G3MA18	Bacillus_virus	4.5e-108	45.1
QAZ59953.1\|2091075_2092152_+	nitric oxide synthase oxygenase	NA	NA	NA	NA
QAZ59954.1\|2092171_2092966_+	ACT domain-containing protein	NA	NA	NA	NA
QAZ59955.1\|2093037_2093145_+	hypothetical protein	NA	NA	NA	NA
QAZ59956.1\|2093155_2094718_-	sodium-dependent dicarboxylate transporter SdcS	NA	NA	NA	NA
QAZ59957.1\|2094922_2096020_-	pectate lyase	U5PWM6	Bacillus_phage	1.9e-47	34.6
QAZ59958.1\|2096391_2096952_+	cysteine hydrolase	G3MA16	Bacillus_virus	2.0e-32	41.2
QAZ59959.1\|2097004_2097934_+	manganese-dependent inorganic pyrophosphatase	NA	NA	NA	NA
QAZ59960.1\|2098128_2098302_-	hypothetical protein	NA	NA	NA	NA
QAZ59961.1\|2098353_2099733_+	aldehyde dehydrogenase	NA	NA	NA	NA
QAZ59962.1\|2099852_2100881_-	hypothetical protein	NA	NA	NA	NA
QAZ59963.1\|2101149_2101551_+	YolD-like family protein	U3PG23	Staphylococcus_phage	6.0e-23	42.9
QAZ59964.1\|2102123_2102297_-	hypothetical protein	NA	NA	NA	NA
QAZ59965.1\|2102747_2103788_+	linear amide C-N hydrolase	NA	NA	NA	NA
QAZ59966.1\|2103844_2104687_-	hypothetical protein	NA	NA	NA	NA
QAZ59967.1\|2104683_2105241_-	DUF1700 domain-containing protein	NA	NA	NA	NA
QAZ59968.1\|2105300_2105825_-	hypothetical protein	NA	NA	NA	NA
QAZ59969.1\|2105945_2106509_+	thioredoxin family protein	NA	NA	NA	NA
QAZ59970.1\|2106574_2107315_-	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
QAZ59971.1\|2107314_2108187_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtC	A0A2H4PQG7	Staphylococcus_phage	6.1e-28	35.2
QAZ59972.1\|2108183_2108864_-	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
QAZ59973.1\|2108864_2109761_-	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	1.1e-16	30.2
QAZ59974.1\|2109757_2110138_-	GntR family transcriptional regulator	NA	NA	NA	NA
QAZ59975.1\|2110401_2110578_-	hypothetical protein	NA	NA	NA	NA
QAZ59976.1\|2110820_2110919_-	hypothetical protein	NA	NA	NA	NA
QAZ59977.1\|2111118_2112405_+	aspartate aminotransferase	NA	NA	NA	NA
QAZ59978.1\|2112728_2113019_-	MAP domain-containing protein	NA	NA	NA	NA
QAZ59979.1\|2113029_2114451_-	MAP domain-containing protein	NA	NA	NA	NA
QAZ59980.1\|2114836_2115037_+	hypothetical protein	A0A1P8L6A7	Staphylococcus_phage	3.4e-27	100.0
QAZ59981.1\|2115408_2115588_+	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
QAZ59982.1\|2115611_2115920_+	hypothetical protein	M9NTD8	Staphylococcus_phage	2.1e-39	100.0
QAZ59983.1\|2115898_2116159_+	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
QAZ59984.1\|2116211_2116562_-	inhibitor	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
QAZ59985.1\|2117071_2117530_-	amidase	R9QTN8	Staphylococcus_phage	2.4e-84	98.7
QAZ59986.1\|2117455_2117611_+	amidase	NA	NA	NA	NA
QAZ59987.1\|2118058_2118550_-	kinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
QAZ59988.1\|2118740_2119496_-	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
QAZ59989.1\|2119507_2119762_-\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
QAZ60962.1\|2119973_2120150_-\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	3.8e-22	96.6
QAZ59990.1\|2120258_2121032_-	enterotoxin	A0A1X9H080	Staphylococcus_phage	1.1e-145	100.0
QAZ59991.1\|2121404_2121779_-	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
QAZ59992.1\|2121834_2122122_-	hypothetical protein	A0A1X9H0N7	Staphylococcus_phage	7.6e-44	100.0
QAZ59993.1\|2122167_2122320_-	hypothetical protein	A0A1W6JPL6	Staphylococcus_phage	1.7e-18	98.0
QAZ59994.1\|2122312_2126095_-	hypothetical protein	A0A1X9H096	Staphylococcus_phage	0.0e+00	99.7
QAZ59995.1\|2126110_2127595_-\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
QAZ59996.1\|2127591_2132121_-\|tail	phage tail tape measure protein	A0A1X9H084	Staphylococcus_phage	0.0e+00	100.0
QAZ59997.1\|2132365_2132716_-	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
QAZ59998.1\|2132765_2132990_-	hypothetical protein	A0A075LYE8	Staphylococcus_phage	8.8e-32	98.6
QAZ59999.1\|2133031_2133676_-\|tail	phage tail protein	W5R9H4	Staphylococcus_phage	6.5e-120	100.0
QAZ60000.1\|2133676_2134084_-	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
QAZ60001.1\|2134080_2134485_-	hypothetical protein	A0A2I6PDJ6	Staphylococcus_phage	4.3e-69	100.0
QAZ60002.1\|2134481_2134844_-\|head,tail	phage head-tail adapter protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2134727:2134744	attL	NA	NA	NA	NA
QAZ60003.1\|2134827_2135112_-\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
QAZ60004.1\|2135124_2135385_-	hypothetical protein	A0A0H3U504	Staphylococcus_phage	6.4e-42	100.0
QAZ60005.1\|2135404_2136550_-\|capsid	phage major capsid protein	A0A1X9H072	Staphylococcus_phage	5.6e-215	100.0
QAZ60006.1\|2136573_2137311_-\|protease	Clp protease ClpP	C8CH20	Staphylococcus_phage	2.3e-129	100.0
QAZ60007.1\|2137294_2138482_-\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
QAZ60008.1\|2138497_2140159_-\|terminase	terminase large subunit	A0A2I6PDJ8	Staphylococcus_phage	0.0e+00	100.0
QAZ60009.1\|2140155_2140500_-	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
QAZ60010.1\|2140629_2140929_-	HNH endonuclease	A0EWY8	Staphylococcus_phage	4.6e-52	100.0
QAZ60011.1\|2141160_2141577_-	transcriptional regulator	A0A1X9H0U8	Staphylococcus_phage	2.9e-76	100.0
QAZ60012.1\|2141604_2141805_-	DUF1514 domain-containing protein	R9QT57	Staphylococcus_phage	1.4e-28	98.5
QAZ60013.1\|2141804_2141954_-	transcriptional regulator	A0A1W6JPZ2	Staphylococcus_phage	4.8e-18	100.0
QAZ60014.1\|2141950_2142337_-	hypothetical protein	W5R986	Staphylococcus_phage	3.0e-64	100.0
QAZ60015.1\|2142333_2142540_-	DUF1381 domain-containing protein	A0A1X9H0C2	Staphylococcus_phage	1.3e-21	100.0
QAZ60016.1\|2142576_2143113_-	dUTPase	A0A1X9H0S5	Staphylococcus_phage	1.4e-96	100.0
QAZ60017.1\|2143105_2143516_-	acetyltransferase	C8CH13	Staphylococcus_phage	2.3e-70	100.0
QAZ60018.1\|2143512_2143998_-	DUF1024 family protein	A0A1X9H0D4	Staphylococcus_phage	3.6e-70	93.4
QAZ60019.1\|2143990_2144275_-	hypothetical protein	S4V9L1	Staphylococcus_phage	2.1e-46	97.9
QAZ60020.1\|2144271_2144721_-	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	2.1e-80	99.3
QAZ60021.1\|2144785_2145034_-	hypothetical protein	A0A0K1LL46	Staphylococcus_phage	1.2e-40	97.6
QAZ60022.1\|2145030_2145288_-	DUF3310 domain-containing protein	A0A1X9H067	Staphylococcus_phage	6.3e-42	98.8
QAZ60023.1\|2145672_2146077_-	RusA family crossover junction endodeoxyribonuclease	A0A075M042	Staphylococcus_phage	8.4e-73	100.0
QAZ60024.1\|2146085_2146304_-	hypothetical protein	A0A1P8L6E4	Staphylococcus_phage	1.4e-37	100.0
QAZ60025.1\|2147232_2147703_-	single-stranded DNA-binding protein	A0A1P8L6D9	Staphylococcus_phage	5.7e-81	100.0
QAZ60026.1\|2147703_2148321_-	MBL fold metallo-hydrolase	A0A1P8L6F7	Staphylococcus_phage	1.2e-86	100.0
QAZ60027.1\|2148401_2149289_-	recombinase	A0A1P8L6F6	Staphylococcus_phage	4.0e-160	99.7
QAZ60028.1\|2151539_2151860_-	DUF1108 family protein	Q8SDW6	Staphylococcus_phage	1.3e-52	99.1
QAZ60029.1\|2151780_2152110_-	hypothetical protein	D2JGJ7	Staphylococcus_phage	1.4e-33	100.0
QAZ60030.1\|2152199_2152361_-	DUF1270 family protein	D2JGJ6	Staphylococcus_phage	4.3e-20	100.0
QAZ60031.1\|2152357_2152678_-	DUF771 domain-containing protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
QAZ60032.1\|2152736_2153369_+	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
QAZ60033.1\|2153383_2153524_-	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
QAZ60034.1\|2153554_2153752_-	hypothetical protein	A0A1W6JPV3	Staphylococcus_phage	1.2e-24	100.0
QAZ60035.1\|2153767_2154517_-	oxidoreductase	O80074	Staphylococcus_phage	2.0e-136	100.0
QAZ60036.1\|2154567_2154897_+	hypothetical protein	A0A0H3U4Z1	Staphylococcus_phage	4.6e-53	100.0
QAZ60037.1\|2154885_2155101_-	DUF2829 domain-containing protein	A0A0H3U4C7	Staphylococcus_phage	4.8e-35	100.0
QAZ60038.1\|2155116_2155380_-	XRE family transcriptional regulator	A0A2I6PF09	Staphylococcus_phage	7.2e-41	100.0
QAZ60039.1\|2155376_2155550_-	transcriptional regulator	NA	NA	NA	NA
QAZ60040.1\|2155512_2156226_+	XRE family transcriptional regulator	M9NUL0	Staphylococcus_phage	1.2e-130	100.0
QAZ60041.1\|2156241_2157174_+	ATP-dependent helicase	A0A2I6PEZ7	Staphylococcus_phage	5.7e-173	100.0
QAZ60042.1\|2157179_2157521_+	hypothetical protein	A0A2I6PF04	Staphylococcus_phage	4.6e-56	100.0
QAZ60043.1\|2157724_2157907_+	hypothetical protein	M9NSW6	Staphylococcus_phage	4.1e-27	100.0
QAZ60044.1\|2158006_2158471_+	hypothetical protein	A0EWV3	Staphylococcus_phage	1.1e-28	100.0
QAZ60045.1\|2158529_2159567_+\|integrase	site-specific integrase	A0EWV2	Staphylococcus_phage	9.1e-180	100.0
QAZ60046.1\|2160685_2161702_-	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	1.1e-25	29.0
2160763:2160780	attR	NA	NA	NA	NA
QAZ60047.1\|2161723_2162779_-	bi-component leukocidin LukGH subunit H	A0A1X9IGW5	Staphylococcus_phage	2.8e-35	34.3
QAZ60048.1\|2163213_2164437_+	M20/M25/M40 family metallo-hydrolase	NA	NA	NA	NA
QAZ60049.1\|2165713_2166625_-	ferrichrome ABC transporter substrate-binding protein	NA	NA	NA	NA
QAZ60050.1\|2166785_2168093_+	TrkH family potassium uptake protein	NA	NA	NA	NA
QAZ60051.1\|2170276_2170720_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
QAZ60052.1\|2170884_2171262_-	hypothetical protein	NA	NA	NA	NA
QAZ60053.1\|2171579_2172170_-\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.1e-97	95.8
QAZ60054.1\|2172166_2172379_-	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	1.1e-23	74.3
QAZ60055.1\|2173080_2174697_-	chaperonin GroEL	A0A240F779	uncultured_virus	1.2e-157	54.7
QAZ60056.1\|2174772_2175057_-	co-chaperone GroES	A0A221S386	uncultured_virus	1.6e-14	47.3
QAZ60057.1\|2175231_2175975_+\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA

DBSCAN-SWA_15

2187041 : 2316447

141

Staphylococcus_phage(93.38%)

tail,transposase,terminase,holin,integrase

attL 2206862:2206881|attR 2315123:2315142

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ60069.1\|2187041_2188292_-	ammonium transporter	H8ZJB2	Ostreococcus_tauri_virus	7.6e-40	31.2
QAZ60070.1\|2188498_2188723_-	oxidoreductase	NA	NA	NA	NA
QAZ60071.1\|2189642_2191181_-	recombinase family protein	A0A0N9RZT8	Staphylococcus_phage	5.3e-277	100.0
QAZ60072.1\|2191170_2191752_-	DNA-binding protein	A0A0N9SK69	Staphylococcus_phage	1.6e-101	97.9
QAZ60073.1\|2191953_2192547_-	RusA family crossover junction endodeoxyribonuclease	A0A0N7GFG7	Staphylococcus_phage	7.9e-112	100.0
QAZ60074.1\|2192530_2192923_-	hypothetical protein	A0A0N9RRM7	Staphylococcus_phage	2.0e-63	96.9
QAZ60075.1\|2192924_2193671_-	NTP pyrophosphohydrolase	A0A0N9SIY2	Staphylococcus_phage	5.3e-121	88.7
QAZ60076.1\|2193683_2193923_-	hypothetical protein	A0A0N9S8B1	Staphylococcus_phage	8.2e-36	94.9
QAZ60077.1\|2193938_2194187_-	thioredoxin	A0A0N9SGY3	Staphylococcus_phage	4.0e-41	98.8
QAZ60078.1\|2194227_2194830_-	hypothetical protein	A0A0N9RTZ3	Staphylococcus_phage	9.8e-110	99.0
QAZ60079.1\|2194857_2195880_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A0N9SK77	Staphylococcus_phage	4.3e-198	99.7
QAZ60080.1\|2195924_2196281_-	hypothetical protein	A0A2H4J2N6	uncultured_Caudovirales_phage	5.9e-38	60.2
QAZ60964.1\|2196594_2199471_-	intein-containing ribonucleoside-diphosphate reductase subunit alpha	A0A0N7GFG8	Staphylococcus_phage	0.0e+00	99.4
QAZ60081.1\|2199525_2199972_-	hypothetical protein	A0A0N9STF9	Staphylococcus_phage	5.1e-71	93.2
QAZ60965.1\|2199971_2200385_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A0N9RZU5	Staphylococcus_phage	8.9e-70	97.8
QAZ60082.1\|2200585_2201287_-	hypothetical protein	A0A0N9RRN5	Staphylococcus_phage	1.8e-123	96.6
QAZ60083.1\|2201298_2201808_-	hypothetical protein	A0A0N9SIY9	Staphylococcus_phage	7.3e-82	97.0
QAZ60084.1\|2201937_2202540_-	hypothetical protein	A0A0N9S8C0	Staphylococcus_phage	1.8e-55	89.2
QAZ60085.1\|2202539_2202770_-	hypothetical protein	A0A0N9SGZ7	Staphylococcus_phage	1.8e-32	100.0
QAZ60086.1\|2202783_2202966_-	hypothetical protein	A0A0N7GFG9	Staphylococcus_phage	3.1e-27	100.0
QAZ60087.1\|2202968_2203322_-	hypothetical protein	A0A0N9RU04	Staphylococcus_phage	1.2e-59	100.0
QAZ60088.1\|2203354_2204353_-	DNA (cytosine-5-)-methyltransferase	A0A0N9SK84	Staphylococcus_phage	3.1e-193	99.7
QAZ60089.1\|2204367_2205054_-	methyltransferase domain-containing protein	A0A0N9SHZ9	Staphylococcus_phage	4.0e-123	96.1
QAZ60090.1\|2205043_2205235_-	hypothetical protein	A0A0N9STH2	Staphylococcus_phage	5.2e-33	96.8
QAZ60091.1\|2205227_2205839_-	nucleoside 2-deoxyribosyltransferase	A0A0N9RZV9	Staphylococcus_phage	3.8e-109	98.0
QAZ60092.1\|2205801_2206032_-	hypothetical protein	A0A0N9SKA8	Staphylococcus_phage	8.2e-25	96.6
QAZ60093.1\|2206031_2206283_-	hypothetical protein	A0A0N9RRP5	Staphylococcus_phage	3.8e-39	100.0
QAZ60094.1\|2206305_2206611_-	hypothetical protein	A0A0N7GFH0	Staphylococcus_phage	1.8e-51	100.0
QAZ60095.1\|2206591_2206879_-	hypothetical protein	A0A0N9SIZ8	Staphylococcus_phage	2.3e-40	92.6
2206862:2206881	attL	NA	NA	NA	NA
QAZ60096.1\|2206871_2207138_-	hypothetical protein	A0A0N9S8D1	Staphylococcus_phage	4.3e-41	97.7
QAZ60097.1\|2207437_2207821_-	hypothetical protein	A0A0N9RU12	Staphylococcus_phage	2.6e-47	94.7
QAZ60098.1\|2207907_2209206_-	ATP-dependent DNA ligase	A0A0N9SK95	Staphylococcus_phage	2.6e-240	98.1
QAZ60099.1\|2209215_2209530_-	hypothetical protein	A0A0N9SI08	Staphylococcus_phage	4.7e-39	81.7
QAZ60100.1\|2209668_2210049_-	hypothetical protein	A0A0N9STI1	Staphylococcus_phage	8.8e-48	96.0
QAZ60101.1\|2210161_2212648_-	hypothetical protein	A0A0N7GFH1	Staphylococcus_phage	0.0e+00	99.5
QAZ60102.1\|2212992_2214429_-	PHP domain-containing protein	A0A0N9SKC7	Staphylococcus_phage	2.7e-275	98.3
QAZ60103.1\|2214441_2214816_-	hypothetical protein	A0A0N9RRQ3	Staphylococcus_phage	1.3e-59	95.2
QAZ60104.1\|2214985_2215480_+	hypothetical protein	A0A0N9SJ02	Staphylococcus_phage	1.0e-64	96.4
QAZ60105.1\|2217409_2218849_-	bifunctional aminoglycoside N-acetyltransferase AAC(6')-Ie/aminoglycoside O-phosphotransferase APH(2'')-Ia	A0A0N9SKF6	Staphylococcus_phage	8.5e-285	100.0
QAZ60966.1\|2218849_2219242_-	GNAT family N-acetyltransferase	A0A0N7GFH7	Staphylococcus_phage	6.9e-72	100.0
QAZ60106.1\|2219298_2220471_-\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
QAZ60107.1\|2220863_2221271_-	WYL domain-containing protein	A0A1B0RXM3	Streptococcus_phage	1.1e-59	98.3
QAZ60108.1\|2221243_2221459_-	WYL domain-containing protein	E4ZFP5	Streptococcus_phage	3.4e-33	98.6
QAZ60109.1\|2222090_2222885_-	aminoglycoside O-phosphotransferase APH(3')-IIIa	E4ZFP6	Streptococcus_phage	2.3e-154	100.0
QAZ60110.1\|2222977_2223421_-	GNAT family N-acetyltransferase	E4ZFP7	Streptococcus_phage	1.5e-70	98.6
QAZ60111.1\|2223392_2223644_-	streptothricin acetyltransferase	A0A1B0RXL7	Streptococcus_phage	2.5e-27	98.7
QAZ60112.1\|2224490_2225213_-	hypothetical protein	A0A0N7GFH2	Staphylococcus_phage	1.4e-89	98.3
QAZ60113.1\|2225321_2226122_-	serine/threonine protein phosphatase	A0A0N9SKA2	Staphylococcus_phage	4.0e-151	100.0
QAZ60114.1\|2226125_2226620_-	hypothetical protein	A0A0N9SI15	Staphylococcus_phage	5.2e-85	98.8
QAZ60115.1\|2226676_2226946_-	hypothetical protein	A0A0N9STI7	Staphylococcus_phage	6.9e-39	100.0
QAZ60967.1\|2226929_2227121_-	hypothetical protein	A0A0N9RZX7	Staphylococcus_phage	8.6e-20	82.5
QAZ60116.1\|2227422_2227818_-	type II toxin-antitoxin system death-on-curing family toxin	A0A0N9SKD8	Staphylococcus_phage	6.7e-59	90.1
QAZ60117.1\|2227817_2228048_-	addiction module antitoxin	A0A0N9RRQ9	Staphylococcus_phage	6.5e-30	85.5
QAZ60118.1\|2228223_2228745_-	serine/threonine protein phosphatase	A0A0N9SJ06	Staphylococcus_phage	1.9e-93	94.2
QAZ60119.1\|2228744_2229395_-	hypothetical protein	A0A0N7GFH3	Staphylococcus_phage	3.5e-113	96.3
QAZ60968.1\|2229394_2229712_-	hypothetical protein	A0A0N9S8E9	Staphylococcus_phage	1.2e-42	82.7
QAZ60120.1\|2229704_2230430_-	serine/threonine protein phosphatase	A0A0N9SH20	Staphylococcus_phage	4.8e-135	95.9
QAZ60121.1\|2230429_2230651_-	hypothetical protein	A0A0N9RU28	Staphylococcus_phage	5.5e-34	95.9
QAZ60122.1\|2230839_2231382_-	hypothetical protein	A0A0N9SI25	Staphylococcus_phage	7.2e-96	97.2
QAZ60123.1\|2231396_2231669_-	hypothetical protein	A0A0N9STJ5	Staphylococcus_phage	6.7e-42	96.7
QAZ60124.1\|2231694_2231850_-	transcriptional regulator	A0A0N9RZY5	Staphylococcus_phage	2.2e-18	98.0
QAZ60125.1\|2232146_2232332_-	hypothetical protein	A0A0N9SKE7	Staphylococcus_phage	1.5e-24	100.0
QAZ60126.1\|2232316_2232496_-	hypothetical protein	A0A0N9RRR6	Staphylococcus_phage	1.1e-21	91.5
QAZ60127.1\|2232509_2232992_-	hypothetical protein	A0A0N9SJ15	Staphylococcus_phage	8.8e-69	94.3
QAZ60128.1\|2232993_2233182_-	hypothetical protein	A0A0N9S8F9	Staphylococcus_phage	4.5e-29	95.2
QAZ60129.1\|2233187_2233379_-	hypothetical protein	A0A0N9SH33	Staphylococcus_phage	6.2e-18	88.0
QAZ60130.1\|2233375_2233603_-	hypothetical protein	NA	NA	NA	NA
QAZ60131.1\|2233607_2233874_-	hypothetical protein	A0A0N9RU37	Staphylococcus_phage	3.6e-40	95.5
QAZ60132.1\|2233863_2234067_-	hypothetical protein	A0A1W6JP82	Staphylococcus_phage	9.2e-20	72.3
QAZ60133.1\|2234085_2234337_-	hypothetical protein	NA	NA	NA	NA
QAZ60134.1\|2234610_2234844_-	hypothetical protein	A0A0N7GFH5	Staphylococcus_phage	2.6e-34	97.4
QAZ60135.1\|2234865_2235090_-	hypothetical protein	A0A0N9SI40	Staphylococcus_phage	2.0e-31	100.0
QAZ60136.1\|2235095_2235443_-	nuclease	A0A0N9STK3	Staphylococcus_phage	4.4e-62	100.0
QAZ60137.1\|2235439_2235850_-	hypothetical protein	A0A0N9RZZ6	Staphylococcus_phage	1.1e-72	97.1
QAZ60138.1\|2235889_2236153_-	hypothetical protein	A0A0N9SKF2	Staphylococcus_phage	6.9e-44	100.0
QAZ60139.1\|2236155_2236527_-	hypothetical protein	A0A2H4JFL4	uncultured_Caudovirales_phage	3.9e-16	38.7
QAZ60140.1\|2236529_2236838_-	hypothetical protein	A0A0N9RRS4	Staphylococcus_phage	1.3e-41	85.3
QAZ60141.1\|2237130_2237406_-	hypothetical protein	A0A0N7GFH6	Staphylococcus_phage	2.0e-41	92.3
QAZ60142.1\|2237418_2237616_-	hypothetical protein	A0A0N9SH39	Staphylococcus_phage	3.2e-25	92.3
QAZ60143.1\|2237626_2238664_-	hypothetical protein	A0A0N9RU46	Staphylococcus_phage	8.8e-191	97.7
QAZ60144.1\|2238920_2239658_-	MBL fold hydrolase	A0A0N9RZK9	Staphylococcus_phage	7.0e-134	99.6
QAZ60145.1\|2239851_2241618_-	single-stranded DNA-binding protein	A0A0N9SK20	Staphylococcus_phage	0.0e+00	99.7
QAZ60146.1\|2241620_2242733_-	hypothetical protein	A0A0N9RRG7	Staphylococcus_phage	1.8e-218	99.7
QAZ60147.1\|2242749_2244282_-	helicase DnaB	A0A0N9SIU7	Staphylococcus_phage	2.4e-293	99.0
QAZ60148.1\|2244303_2244822_-	hypothetical protein	A0A0N9S850	Staphylococcus_phage	1.8e-91	99.4
QAZ60149.1\|2244898_2245867_-	hypothetical protein	A0A0N9SGS5	Staphylococcus_phage	1.0e-180	99.4
QAZ60150.1\|2245989_2246949_-	hypothetical protein	A0A0N7GFF9	Staphylococcus_phage	6.7e-169	100.0
QAZ60151.1\|2246992_2247673_-	hypothetical protein	A0A0N9RTS7	Staphylococcus_phage	2.0e-127	100.0
QAZ60152.1\|2247690_2248179_-	hypothetical protein	A0A0N9SK25	Staphylococcus_phage	2.3e-53	99.4
QAZ60153.1\|2248194_2248443_-	hypothetical protein	A0A0N9SHT9	Staphylococcus_phage	1.7e-39	97.6
QAZ60154.1\|2248601_2249606_-	hypothetical protein	A0A0N9ST56	Staphylococcus_phage	1.0e-183	99.4
QAZ60155.1\|2249617_2250898_-	hypothetical protein	A0A0N9RZM2	Staphylococcus_phage	1.1e-235	99.8
QAZ60156.1\|2251196_2252240_-\|integrase	integrase	A0A0N9SK33	Staphylococcus_phage	8.0e-192	98.6
QAZ60157.1\|2252931_2253360_-	hypothetical protein	A0A0N9RRH5	Staphylococcus_phage	9.5e-75	98.6
QAZ60158.1\|2253437_2253959_-	hypothetical protein	A0A0N7GFG0	Staphylococcus_phage	1.7e-89	98.3
QAZ60159.1\|2253958_2254222_-	hypothetical protein	A0A0N9SIV3	Staphylococcus_phage	4.3e-38	89.7
QAZ60160.1\|2254391_2255564_+\|transposase	IS256 family transposase IS256	A0A0N9STL0	Staphylococcus_phage	3.5e-135	100.0
QAZ60161.1\|2255856_2256537_-	hypothetical protein	A0A0N9S858	Staphylococcus_phage	8.5e-118	93.4
QAZ60162.1\|2256632_2256956_-	hypothetical protein	A0A0N9RTT7	Staphylococcus_phage	1.7e-52	92.5
QAZ60163.1\|2257003_2257663_-	antirestriction protein ArdA	A0A0N9SK30	Staphylococcus_phage	7.7e-116	93.2
QAZ60164.1\|2257817_2258207_-	hypothetical protein	A0A0N9SHU5	Staphylococcus_phage	1.3e-62	93.0
QAZ60165.1\|2258343_2258604_-	hypothetical protein	A0A0N9ST70	Staphylococcus_phage	3.5e-40	98.8
QAZ60969.1\|2258678_2258894_-	hypothetical protein	A0A0N7GFG1	Staphylococcus_phage	2.2e-32	94.4
QAZ60166.1\|2259345_2259630_-	hypothetical protein	A0A0N9SK40	Staphylococcus_phage	1.2e-44	96.8
QAZ60167.1\|2259675_2259954_-	hypothetical protein	NA	NA	NA	NA
QAZ60168.1\|2260929_2261238_-	hypothetical protein	NA	NA	NA	NA
QAZ60169.1\|2261627_2261885_-	hypothetical protein	A0A0N9RRI7	Staphylococcus_phage	4.3e-14	95.0
QAZ60170.1\|2263749_2264625_-	hypothetical protein	A0A0N9SIV7	Staphylococcus_phage	6.3e-166	99.7
QAZ60171.1\|2264660_2266946_-	helicase	A0A0N9S864	Staphylococcus_phage	0.0e+00	100.0
QAZ60172.1\|2267081_2268578_+	hypothetical protein	A0A0N9SGU3	Staphylococcus_phage	8.3e-267	98.6
QAZ60173.1\|2268836_2269166_+	HU family DNA-binding protein	A0A0N9RTU9	Staphylococcus_phage	8.1e-50	95.4
QAZ60174.1\|2269191_2269377_+	hypothetical protein	A0A0N7GFG2	Staphylococcus_phage	1.7e-25	100.0
QAZ60175.1\|2269385_2270570_+	hypothetical protein	A0A0N9SK37	Staphylococcus_phage	4.8e-217	97.5
QAZ60176.1\|2272268_2273153_+	hypothetical protein	A0A0N9SHV5	Staphylococcus_phage	4.5e-172	100.0
QAZ60177.1\|2273145_2274945_+\|terminase	terminase	A0A0N9RZP6	Staphylococcus_phage	2.0e-206	99.7
QAZ60178.1\|2274962_2276525_+	hypothetical protein	A0A0N9SK48	Staphylococcus_phage	6.6e-299	100.0
QAZ60179.1\|2276517_2277897_+	hypothetical protein	A0A0N9RRJ7	Staphylococcus_phage	4.1e-244	97.8
QAZ60180.1\|2277924_2278365_+	hypothetical protein	A0A0N9SIW4	Staphylococcus_phage	3.0e-76	98.6
QAZ60181.1\|2278404_2279406_+	hypothetical protein	A0A0N9S885	Staphylococcus_phage	5.6e-110	99.5
QAZ60182.1\|2279480_2280032_+	hypothetical protein	A0A0N9SGV3	Staphylococcus_phage	1.5e-80	100.0
QAZ60183.1\|2280049_2280484_+	hypothetical protein	A0A0N9RTW0	Staphylococcus_phage	3.5e-69	100.0
QAZ60184.1\|2280473_2280791_+	hypothetical protein	A0A0N9SK47	Staphylococcus_phage	2.6e-53	100.0
QAZ60185.1\|2280794_2281460_+	hypothetical protein	A0A0N9SHW2	Staphylococcus_phage	1.3e-123	100.0
QAZ60186.1\|2281449_2281971_+	hypothetical protein	A0A0N9ST98	Staphylococcus_phage	2.0e-95	100.0
QAZ60187.1\|2281976_2282849_+	hypothetical protein	A0A0N9RZR7	Staphylococcus_phage	1.5e-159	100.0
QAZ60188.1\|2282887_2283679_+	hypothetical protein	A0A0N7GFG4	Staphylococcus_phage	8.6e-138	97.7
QAZ60189.1\|2283762_2284320_+	hypothetical protein	A0A0N9SK55	Staphylococcus_phage	2.7e-98	100.0
QAZ60190.1\|2284319_2284793_+	hypothetical protein	A0A0N9RRK6	Staphylococcus_phage	2.5e-84	98.1
QAZ60191.1\|2284808_2285825_+\|integrase	site-specific integrase	A0A0N9SIX3	Staphylococcus_phage	2.3e-196	99.4
QAZ60192.1\|2285921_2294195_+\|tail	phage tail tape measure protein	A0A0N9S894	Staphylococcus_phage	0.0e+00	99.8
QAZ60193.1\|2296358_2304560_+	hypothetical protein	A0A0N9RTX0	Staphylococcus_phage	0.0e+00	89.9
QAZ60194.1\|2304562_2304937_+	hypothetical protein	A0A0N9SK58	Staphylococcus_phage	8.6e-56	87.9
QAZ60195.1\|2305138_2307808_+\|tail	tail fiber domain-containing protein	A0A0N9SHX2	Staphylococcus_phage	0.0e+00	99.8
QAZ60970.1\|2307854_2308316_+	hypothetical protein	A0A0N9STA8	Staphylococcus_phage	7.3e-65	96.2
QAZ60196.1\|2308297_2308810_+	hypothetical protein	A0A0N9RZS7	Staphylococcus_phage	7.9e-44	85.3
QAZ60197.1\|2308831_2309161_+\|holin	phage holin	A0A0N9SK62	Staphylococcus_phage	1.0e-52	96.3
QAZ60198.1\|2309212_2310874_+	hypothetical protein	A0A0N9RRL9	Staphylococcus_phage	1.9e-115	91.3
QAZ60199.1\|2310873_2311401_+	hypothetical protein	A1BU75	Staphylococcus_virus	2.9e-09	29.4
QAZ60200.1\|2311557_2313060_+	N-acetylmuramoyl-L-alanine amidase	A0A0N9SGX6	Staphylococcus_phage	9.8e-276	95.4
QAZ60201.1\|2314030_2315680_-	hypothetical protein	A0A0N9SHY1	Staphylococcus_phage	6.1e-312	94.5
2315123:2315142	attR	NA	NA	NA	NA
QAZ60202.1\|2315832_2316447_-	LPXTG cell wall anchor domain-containing protein	A0A0N9STB7	Staphylococcus_phage	6.8e-74	96.6

DBSCAN-SWA_16

2831662 : 2887871

Enterobacteria_phage(22.22%)

protease,transposase,holin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ60700.1\|2831662_2832352_-\|holin	holin-like protein CidB	NA	NA	NA	NA
QAZ60701.1\|2832344_2832740_-\|holin	holin-like murein hydrolase modulator CidA	NA	NA	NA	NA
QAZ60990.1\|2832952_2833816_-	LysR family transcriptional regulator	NA	NA	NA	NA
QAZ60702.1\|2833997_2834216_+	hypothetical protein	NA	NA	NA	NA
QAZ60703.1\|2834604_2835036_+	CHAP domain-containing protein	NA	NA	NA	NA
QAZ60704.1\|2835300_2835405_-	hypothetical protein	NA	NA	NA	NA
QAZ60705.1\|2835795_2836053_-	hypothetical protein	NA	NA	NA	NA
QAZ60706.1\|2836631_2837909_-	hydroxymethylglutaryl-CoA reductase, degradative	NA	NA	NA	NA
QAZ60707.1\|2839445_2839967_-	methylated-DNA--[protein]-cysteine S-methyltransferase	M1PFU9	Streptococcus_phage	2.0e-26	41.1
QAZ60708.1\|2840375_2842481_+\|protease	ATP-dependent Clp protease ATP-binding subunit	H6X3M6	Enterobacteria_phage	3.1e-118	38.5
QAZ60709.1\|2842549_2842720_-	FeoB-associated Cys-rich membrane protein	NA	NA	NA	NA
QAZ60710.1\|2842732_2844727_-	ferrous iron transport protein B	NA	NA	NA	NA
QAZ60711.1\|2844738_2844966_-	ferrous iron transporter A	NA	NA	NA	NA
QAZ60712.1\|2845181_2847650_-	MMPL family transporter	NA	NA	NA	NA
QAZ60713.1\|2847815_2848364_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QAZ60714.1\|2848440_2848608_-	hypothetical protein	NA	NA	NA	NA
QAZ60715.1\|2848719_2850264_-	L-glutamate gamma-semialdehyde dehydrogenase	NA	NA	NA	NA
QAZ60716.1\|2850453_2851053_-	sugar O-acetyltransferase	NA	NA	NA	NA
QAZ60717.1\|2851291_2851483_+	hypothetical protein	NA	NA	NA	NA
QAZ60718.1\|2851722_2854131_+	copper-exporting P-type ATPase A	A0A218MNH6	uncultured_virus	2.9e-128	40.8
QAZ60719.1\|2854675_2854882_+	copper resistance protein CopZ	NA	NA	NA	NA
QAZ60720.1\|2854971_2855970_-	D-lactate dehydrogenase	M1HKI4	Acanthocystis_turfacea_Chlorella_virus	3.5e-35	30.2
QAZ60721.1\|2855992_2857147_-	N-succinyldiaminopimelate aminotransferase	NA	NA	NA	NA
QAZ60722.1\|2857573_2859082_-	dehydrosqualene desaturase	NA	NA	NA	NA
QAZ60723.1\|2859093_2859957_-	dehydrosqualene synthase	NA	NA	NA	NA
QAZ60724.1\|2859993_2861121_-	glycosyltransferase family 2 protein	NA	NA	NA	NA
QAZ60725.1\|2861126_2862620_-	NAD(P)/FAD-dependent oxidoreductase	NA	NA	NA	NA
QAZ60991.1\|2862612_2863101_-	glycosyl-4,4'-diaponeurosporenoate acyltransferase	NA	NA	NA	NA
QAZ60726.1\|2863281_2864049_-	CHAP domain-containing protein	NA	NA	NA	NA
QAZ60727.1\|2864409_2866221_-	O-acetyltransferase OatA	A0A1R3Y5Q6	Salmonella_virus	1.3e-35	31.5
QAZ60728.1\|2866906_2867608_-	transglycosylase IsaA	Q4Z8Z7	Staphylococcus_phage	2.1e-39	46.8
QAZ60729.1\|2868215_2869271_-	PTS transporter subunit IIC	NA	NA	NA	NA
QAZ60992.1\|2869681_2870251_+	TetR/AcrR family transcriptional regulator	NA	NA	NA	NA
QAZ60730.1\|2870448_2870949_+	hypothetical protein	NA	NA	NA	NA
QAZ60731.1\|2871168_2871399_+	DUF896 domain-containing protein	NA	NA	NA	NA
QAZ60732.1\|2871561_2871939_-	glyoxalase	NA	NA	NA	NA
QAZ60733.1\|2871955_2872777_-	NmrA/HSCARG family protein	NA	NA	NA	NA
QAZ60734.1\|2872795_2873095_-	DUF2316 family protein	NA	NA	NA	NA
QAZ60735.1\|2873225_2873783_+	TetR family transcriptional regulator	NA	NA	NA	NA
QAZ60736.1\|2873775_2874480_+	SDR family NAD(P)-dependent oxidoreductase	NA	NA	NA	NA
QAZ60737.1\|2874577_2875588_+	amidohydrolase	NA	NA	NA	NA
QAZ60738.1\|2876585_2877476_-	GTP-binding protein	NA	NA	NA	NA
QAZ60739.1\|2877575_2878916_-	ferrous iron transporter B	NA	NA	NA	NA
QAZ60740.1\|2878909_2880016_-	pyridine nucleotide-disulfide oxidoreductase	NA	NA	NA	NA
QAZ60741.1\|2880410_2880947_-\|transposase	IS30 family transposase	Q9MBM9	Staphylococcus_prophage	9.9e-29	43.6
QAZ60742.1\|2881047_2881863_-	ATP-binding protein	NA	NA	NA	NA
QAZ60743.1\|2881855_2883298_-\|transposase	transposase	NA	NA	NA	NA
QAZ60744.1\|2883269_2883863_-	HTH domain-containing protein	A0A0A7NPV4	Enterobacteria_phage	1.1e-41	51.1
QAZ60745.1\|2885663_2886143_-	hypothetical protein	NA	NA	NA	NA
QAZ60746.1\|2886249_2887095_+	BlaZ family penicillin-hydrolyzing class A beta-lactamase PC1	A0A1B0VBP7	Salmonella_phage	1.5e-31	34.0
QAZ60747.1\|2887355_2887871_-\|transposase	transposase	NA	NA	NA	NA

Anti-CRISPR protein detection

Acr_ID: CP030138.1|QAZ60704.1|2835300_2835405_-|hypothetical-protein

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Acr ID

Acr position

Acr size

Homology with known anti

Neighbor HTH/AcRanker

Neighbor Aca

In prophage

Protospacer in prophage

CP030138.1|QAZ60704.1|2835300_2835405_-|hypothetical-protein

2835300_2835405_-

34 aa aa

2831662-2887871

yes

CRISPR ID	CRISPR type	Spacer info	Spacer location	Spacer length	Protospacer location	Mismatch
CP030138_6	Orphan	6.4\|978877\|53\|CP030138\|CRT	978877-978929	53	2854320-2854268	1
CP030138_8	Orphan	8.5\|1192935\|35\|CP030138\|CRT	1192935-1192969	35	2854365-2854331	2

1. spacer 6.4|978877|53|CP030138|CRT matches to CP030138 position: 2854320-2854268, mismatch: 1

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttacgaaaatatcatttctgtcccactcccaa	Protospacer
***********************.*****************************

2. spacer 8.5|1192935|35|CP030138|CRT matches to CP030138 position: 2854365-2854331, mismatch: 2

catagagaaattggaaccccaatttctacagacaa	CRISPR spacer
catagagaaattggattcccaatttctacagacaa	Protospacer
*************** .******************

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP030138

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CRISPR-Cas detection and classification

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Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

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