CRISPRimmunity

Please click to download your results

Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP029606	Methylibium sp. Pch-M chromosome, complete genome	3 crisprs	DEDDh,Cas9_archaeal,DinG,csa3,cas3	0	0	3	0

Results visualization

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Crispr_ID: CP029606_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029606_1

1228902-1228991

Orphan

Consensus_repeat	Method
AGAAGTTGTTGTTCTGCTCCGAGA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029606_1

>merge|CP029606|1|1228902-1228991|CRISPRCasFinder
AGAAGTTGTTGTTCTGCTCCGAGAGGTTGGGGCGGACCGTTCGGGACGGCCCTACTCGGACTGGCTAGAAATTGTTGTTCTGCTCCGAGA

>CP029606|1|1|1228902-1228991|CRISPRCasFinder
AGAAGTTGTTGTTCTGCTCCGAGA	GGTTGGGGCGGACCGTTCGGGACGGCCCTACTCGGACTGGCT
AGAAATTGTTGTTCTGCTCCGAGA

Protein	Signature genes	Signature genes Name	Protein_function
CP029606.1\|QAZ38975.1\|1226227_1226527_+\|ferredoxin	unknown	unknown	gnl\|CDD\|319871
CP029606.1\|QAZ38986.1\|1237535_1238114_-\|Holliday-junction-branch-migration-protein-RuvA	unknown	unknown	gnl\|CDD\|234645
CP029606.1\|QAZ38982.1\|1231559_1233389_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|274350
CP029606.1\|QAZ38983.1\|1233439_1234279_+\|formamidopyrimidine-DNA-glycosylase	unknown	unknown	gnl\|CDD\|234899
CP029606.1\|QAZ38973.1\|1225000_1225615_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	unknown	unknown	gnl\|CDD\|223813
CP029606.1\|QAZ38976.1\|1226542_1227007_-\|hypothetical-protein	unknown	unknown	unknown
CP029606.1\|QAZ38978.1\|1228169_1228817_-\|50S-ribosomal-protein-L25	unknown	unknown	gnl\|CDD\|235534
CP029606.1\|QAZ38984.1\|1234408_1236436_+\|dynamin-family-protein	unknown	unknown	gnl\|CDD\|206739
CP029606.1\|QAZ38987.1\|1238156_1238816_-\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP029606.1\|QAZ38985.1\|1236432_1237539_+\|A/G-specific-adenine-glycosylase	unknown	unknown	gnl\|CDD\|224115
CP029606.1\|QAZ38981.1\|1231038_1231563_-\|outer-membrane-lipoprotein-LolB	unknown	unknown	gnl\|CDD\|319984
CP029606.1\|QAZ38970.1\|1221549_1222923_+\|signal-recognition-particle-protein	unknown	unknown	gnl\|CDD\|236780
CP029606.1\|QAZ38974.1\|1225650_1226151_+\|pantetheine-phosphate-adenylyltransferase	unknown	unknown	gnl\|CDD\|234674
CP029606.1\|QAZ38988.1\|1238883_1240743_-\|histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP029606.1\|QAZ38989.1\|1240835_1241798_+\|phosphate-starvation-inducible-protein-PhoH	unknown	unknown	gnl\|CDD\|224616
CP029606.1\|QAZ38972.1\|1223817_1224870_-\|signal-recognition-particle-docking-protein-FtsY	unknown	unknown	gnl\|CDD\|236686
CP029606.1\|QAZ38971.1\|1223003_1223801_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|371282
CP029606.1\|QAZ38977.1\|1227015_1227714_-\|aminoacyl-tRNA-hydrolase	unknown	unknown	gnl\|CDD\|235457
CP029606.1\|QAZ41384.1\|1220618_1221443_-\|cytochrome-C-assembly-protein	unknown	unknown	gnl\|CDD\|226621
CP029606.1\|QAZ38980.1\|1230162_1231026_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	unknown	unknown	gnl\|CDD\|234731

Protein	Function_ID	Function_description	E-value
CP029606.1\|QAZ38975.1\|1226227_1226527_+\|ferredoxin	gnl\|CDD\|319871	cd10549, MtMvhB_like, Uncharacterized polyferredoxin-like protein. This family contains uncharacterized polyferredoxin protein similar to Methanobacterium thermoautotrophicum MvhB. The mvhB is a gene of the methylviologen-reducing hydrogenase operon. It is predicted to contain 12 [4Fe-4S] clusters, and was therefore suggested to be a polyferredoxin. As a subfamily of the beta subunit of the DMSO Reductase (DMSOR) family, it is predicted to function as electron carrier in the reducing reaction.	2.57721e-07
CP029606.1\|QAZ38986.1\|1237535_1238114_-\|Holliday-junction-branch-migration-protein-RuvA	gnl\|CDD\|234645	PRK00116, ruvA, Holliday junction branch migration protein RuvA.	2.42442e-94
CP029606.1\|QAZ38982.1\|1231559_1233389_-\|hypothetical-protein	gnl\|CDD\|274350	TIGR02917, TPR_domain_protein, putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.	6.22384e-14
CP029606.1\|QAZ38983.1\|1233439_1234279_+\|formamidopyrimidine-DNA-glycosylase	gnl\|CDD\|234899	PRK01103, PRK01103, bifunctional DNA-formamidopyrimidine glycosylase/DNA-(apurinic or apyrimidinic site) lyase.	3.70295e-133
CP029606.1\|QAZ38973.1\|1225000_1225615_+\|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD	gnl\|CDD\|223813	COG0742, COG0742, N6-adenine-specific methylase [DNA replication, recombination, and repair].	2.11511e-52
CP029606.1\|QAZ38984.1\|1234408_1236436_+\|dynamin-family-protein	gnl\|CDD\|206739	cd09912, DLP_2, Dynamin-like protein including dynamins, mitofusins, and guanylate-binding proteins. The dynamin family of large mechanochemical GTPases includes the classical dynamins and dynamin-like proteins (DLPs) that are found throughout the Eukarya. This family also includes bacterial DLPs. These proteins catalyze membrane fission during clathrin-mediated endocytosis. Dynamin consists of five domains; an N-terminal G domain that binds and hydrolyzes GTP, a middle domain (MD) involved in self-assembly and oligomerization, a pleckstrin homology (PH) domain responsible for interactions with the plasma membrane, GED, which is also involved in self-assembly, and a proline arginine rich domain (PRD) that interacts with SH3 domains on accessory proteins. To date, three vertebrate dynamin genes have been identified; dynamin 1, which is brain specific, mediates uptake of synaptic vesicles in presynaptic terminals; dynamin-2 is expressed ubiquitously and similarly participates in membrane fission; mutations in the MD, PH and GED domains of dynamin 2 have been linked to human diseases such as Charcot-Marie-Tooth peripheral neuropathy and rare forms of centronuclear myopathy. Dynamin 3 participates in megakaryocyte progenitor amplification, and is also involved in cytoplasmic enlargement and the formation of the demarcation membrane system. This family also includes mitofusins (MFN1 and MFN2 in mammals) that are involved in mitochondrial fusion. Dynamin oligomerizes into helical structures around the neck of budding vesicles in a GTP hydrolysis-dependent manner.	1.42004e-23
CP029606.1\|QAZ38978.1\|1228169_1228817_-\|50S-ribosomal-protein-L25	gnl\|CDD\|235534	PRK05618, PRK05618, 50S ribosomal protein L25/general stress protein Ctc; Reviewed.	7.94269e-78
CP029606.1\|QAZ38987.1\|1238156_1238816_-\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	9.92956e-47
CP029606.1\|QAZ38985.1\|1236432_1237539_+\|A/G-specific-adenine-glycosylase	gnl\|CDD\|224115	COG1194, MutY, A/G-specific DNA glycosylase [DNA replication, recombination, and repair].	3.83058e-133
CP029606.1\|QAZ38981.1\|1231038_1231563_-\|outer-membrane-lipoprotein-LolB	gnl\|CDD\|319984	cd16326, LolB, LolB, an outer membrane lipoprotein receptor. This family contains the outer membrane lipoprotein receptor, LolB, which catalyzes the last step of lipoprotein transfer from the inner to the outer membrane. There are five Lol proteins (LolA, LolB, LolC, LolD, and LolE) involved in the sorting and membrane localization of lipoprotein and are highly conserved in Gram-negative bacteria. LolA transports lipoproteins through the periplasm to LolB, which then localizes them to outer membranes; the protruding loop of LolB has been shown to be essential for the localization of lipoproteins in the anchoring of bacterial triacylated proteins to the outer membrane.	6.64982e-22
CP029606.1\|QAZ38970.1\|1221549_1222923_+\|signal-recognition-particle-protein	gnl\|CDD\|236780	PRK10867, PRK10867, signal recognition particle protein; Provisional.	0
CP029606.1\|QAZ38974.1\|1225650_1226151_+\|pantetheine-phosphate-adenylyltransferase	gnl\|CDD\|234674	PRK00168, coaD, phosphopantetheine adenylyltransferase; Provisional.	1.6525e-88
CP029606.1\|QAZ38988.1\|1238883_1240743_-\|histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	3.85316e-32
CP029606.1\|QAZ38989.1\|1240835_1241798_+\|phosphate-starvation-inducible-protein-PhoH	gnl\|CDD\|224616	COG1702, PhoH, Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms].	2.84043e-141
CP029606.1\|QAZ38972.1\|1223817_1224870_-\|signal-recognition-particle-docking-protein-FtsY	gnl\|CDD\|236686	PRK10416, PRK10416, signal recognition particle-docking protein FtsY; Provisional.	3.26957e-163
CP029606.1\|QAZ38971.1\|1223003_1223801_+\|hypothetical-protein	gnl\|CDD\|371282	pfam10881, DUF2726, Protein of unknown function (DUF2726). This bacterial family of proteins has no known function.	8.44388e-12
CP029606.1\|QAZ38977.1\|1227015_1227714_-\|aminoacyl-tRNA-hydrolase	gnl\|CDD\|235457	PRK05426, PRK05426, peptidyl-tRNA hydrolase; Provisional.	1.42573e-107
CP029606.1\|QAZ41384.1\|1220618_1221443_-\|cytochrome-C-assembly-protein	gnl\|CDD\|226621	COG4137, COG4137, ABC-type uncharacterized transport system, permease component [General function prediction only].	2.84872e-37
CP029606.1\|QAZ38980.1\|1230162_1231026_-\|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase	gnl\|CDD\|234731	PRK00343, ipk, 4-diphosphocytidyl-2-C-methyl-D-erythritol kinase; Provisional.	5.08887e-150

>CP029606.1|QAZ38978.1|1228169_1228817_-|50S-ribosomal-protein-L25
MKFVAYPRELQGTGASRRLRISGKVPGIVYGAGEPLKIELDHNALFHALKKEAFHASLLDMEFDGKSQQVLLRDVQMHAYRPQVLHVDFQRVDATTRVTKKVPLHFVNEENAPGVKLDKGLISHVVTELEVECLASQLPEYLTVDLGELAKGQSLHVNDLKLPPSVKVVLRGKKNPVIATVVMQAAEEAPAEVAVPTAAAAPAAKGKKSEKQNKK
>CP029606.1|QAZ38977.1|1227015_1227714_-|aminoacyl-tRNA-hydrolase
MIRLMVGLGNPGPEYEATRHNAGFWWVDAVARQLKVSLHAERAYHGLVARVNTPAGPVWLLEPQTYMNVSGKSVAALARFFKIAPEEILVAHDELDLPPGEMKLKQGGGHAGHNGLRDIHAQLGSTDYWRLRLGIGHPGVKTEVANYVLGKPMREHREAIDACIVRSLTAVDALLAGDMSKATLRLHTSKPPRPKPPRPVALADAGAPAAADASRAPDVAGSAPSPTQCDPP
>CP029606.1|QAZ38976.1|1226542_1227007_-|hypothetical-protein
MLSLLVPGLFAAAAPQAASAQGAVYRCGADGRSYSQQPCADGRTLRVDGDVRTPAQRQQAMEAARRDARLADALAHERRQAESVSVRAASLSATTPKDAAVHATAGKPTPKKRRHAKRPANPPDGASGDFKATGPAPPGVKKKTRVGTAAPPTR
>CP029606.1|QAZ38975.1|1226227_1226527_+|ferredoxin
MALMITDDCINCDVCEPECPNQAISLGPEIYVIDPAKCTECVGHFDEPQCVQVCPVACIPVNPAHVESPPQLWAKFRALVGEPASPDVSPLPPSGTAAG
>CP029606.1|QAZ38974.1|1225650_1226151_+|pantetheine-phosphate-adenylyltransferase
MPFNPGLSAVYPGTFDPMTLGHQDLVRRASALFPRLIVAVAAGHHKRTMFTIAERLEIAQDLLASHRNVEVIAFRGLLRDFVVEHGGKVVVRGLRAVSDFEYEFQMAGMNRQLMPNVETVFLTPSDQYQFISGTFVREIATLGGDVSKFVAPSVLERLKQRVSQAT
>CP029606.1|QAZ38973.1|1225000_1225615_+|16S-rRNA-(guanine(966)-N(2))-methyltransferase-RsmD
MSRAPAAARPAATPARPGEVRLIGGQWKRSKLPVPVAPGLRPTPDRVRETLFNWLGQDLSGWRCLDAFAGSGALGFEAASRGASDVMLLERDAALARGLRAVRARLAAHTVRIEAVDALAWMTRYAGAPFDLVLLDPPFDCGLFEPALRAAQRVLAPTGRAYLEADRAFEAETLAPLGFALDRHTRAGQVHAHLLRPAARDAAA
>CP029606.1|QAZ38972.1|1223817_1224870_-|signal-recognition-particle-docking-protein-FtsY
MFSFFKKKAPVAAPPPTGPEAPAASAPSPGPAAEVGAAAAAPAEQRRPWLDRLKSGLRRTGSSITQVFTGTRIDEALYEELEAALLMADAGMPATQHLLADLKRRVKEHKATDPAAVKLLLIDALAELLAPLQRPLVLGETRPTVIMVAGVNGAGKTTSIGKLTRHLADGGLKVLLAAADTFRAAAKEQLAVWADRNRVEIVSQEGGDPAAVSFDAVKAGQARGCDVVVADTAGRLPTQVHLMEELRKIKRTIGKAMDGAPHEVLLVVDGNTGQNALAQVKAFDAVLGLTGLVVTKLDGTAKGGVLAAIALWSRERDGASPVPVYFIGVGEKLADLETFDAREFSQALLT
>CP029606.1|QAZ38971.1|1223003_1223801_+|hypothetical-protein
MGDPIVLQALAVLLAGLLLVALARRRGGRERPEGQGRDKQRDKRVEALDTVAAWPPEATRVLTLKERKAQLVLQQALPEYTVLAQVPLARFIRVPTRNSYHEWMRRVGQICADLVVCDTVSQVIAVIEVRRPPGKDGERTVRRHERMDRVLQQAGIRVIVWNEDALPSVSLVRDQVVNTSQALRTGDGGSRVRTRPAAVMPGVQVTEMGPSGAAPATRPAMVTLQDVLEDLDREAADGATLAEPAQSTWFDDLSSASMPLDAPAR
>CP029606.1|QAZ38970.1|1221549_1222923_+|signal-recognition-particle-protein
MASALSERLSRLVKTMRGQARITEDNVQDMLREVRMALLEADVALPVVRDFIARVKEKALGQEVVGSLSPGQALVGVVHKELAATMGAGGVAELNLATQPPAVILMAGLQGAGKTTTTAKLARHLIGRKKKVLTVSGDVYRPAAIEQLKTVTQQTGAEWFPSQASDQPVDIALAAVDYAKKHYFDVLLVDTAGRLAIDDAMMAEIRALHAALNPIETLFVVDAMQGQDAINVAKAFKEALPLTGIVLTKLDGDSRGGAALSVRQVTGAPIKFAGVSEKIDGLELFDAERHAGRVLGMGDILALVEQVQQGVDLQAAQKLADKVKSGSGFDLEDFLSQISQMKNMGGLSGLIDKLPAQMTGGKTPQLGAADMDRAERDVRRMEGIIRSMTPLERRKPELLKASRKRRIAAGAGVQVQEVNRLLNQFEQMQGMMKKMKGGGMMKLMKRMGGGGMKGFVR
>CP029606.1|QAZ41384.1|1220618_1221443_-|cytochrome-C-assembly-protein
MILSPGLSAASLLPLAATSIVALLAYLVAAFRREATWLGVVLAVGWIGHGLAIGLHAAGVGEAQPGARFGFAPALSVTLWLVLAVYAIESRFVPLAGVRRTLAVLGAAAVVLTLVFPGELRPHAGSPWAPLHWILGIASYGLFGTALLHAALLRRAEQRLRSKPAAGEAPRVPSPGLPLLRLEKLTFRFVAAGFVVLSATLLLGWWFSSPWRWDHKSVFSVLAWGVFAALLAGRRAFGWRGRLATRWLYVGAGLLLLAYVGSRFVLEVVLHRTA
>CP029606.1|QAZ38980.1|1230162_1231026_-|4-(cytidine-5'-diphospho)-2-C-methyl-D-erythritol-kinase
MSLQALYDVPAPAKLNLFLHVTGRRDDGYHLLQSVFALIDWADTLHFERRDDGRLVRHDLAAALPEDDLCLRAARLLQRESACRLGADISIDKQVPWGAGLGGGSSDAASTLLALNRLWGLHWPRERLLALGLQLGADVPFFLGGHNAWVEGIGERLTPIELAPRWWAVLKPAVAVPTAAIFGSPQLVRNTAAATISDFSANAVEFGHNDLQTPATAYSDEVAQALALLQSRYGASRMSGSGSAVFAEAGTGETPTVAMMEAASLPPSWVGRMCRGLTVHPLALWAG
>CP029606.1|QAZ38981.1|1231038_1231563_-|outer-membrane-lipoprotein-LolB
MRRGCALLAAACAAAVWLAGCAGVGPPAPQGERLAGRLSVRVEGDAARNFNAAFELEGSSESGQLSLTTPLGIQLARADWSPRQVRLRSGDGERLYPDLESLAEDALGERVPLAALFDWLHARPWPGAPSAAQPQGFSQLGWVVDVSRRAEGWVEARRAALPVVSVRAKLDDAR
>CP029606.1|QAZ38982.1|1231559_1233389_-|hypothetical-protein
MAPFRFAVLALAASSVLAATAWAQPAPAEVPASGPGAAAPVENSVLDAPLFYQLLIGEMELSQGDAGTSYQVLLDAARKTRDERLFRRATEVALQAQAGEQALDAARAWRQAVPGSIDAHRFEVQLLVALNRTAETVQPLRATLALVPPAQRPAAIGSLPGYFSRTTDRKATTAVLEQVLLPYAEQRSAGEPQATAVAAWVALGRSRLAAGDAARALDAARRGQALSPRSEAVALLAIELMPTEQRAESLVTAFLEAQPPAPAATRSAVRLVYARTLAVAQRYADAAPQLEAVTRDAPQFVDAWLTLGALRLELKQPAEAEAALREYLARLEAGSEAAANEAADVPQDEDAATPTQRLTQAYLLLAQAAEQRRDFKAAEGWLTKVDSSQALTVQSRRASLLAQQGKLAEARSLIRALPERQPEDARSKLLVEAQLLRDQKQWSEALGVLAEANDRYRDDTDLLYEQAMMAEKLDRMTEMEQLLRRVIALKPQQAQAYNALGYSLADRNQRLPEARQLITKALELSPGDPFLIDSLGWVEYRLGNHDEAIRWLRQAHGARPDTEIAAHLGEVLWVSGRRDEARRIWAEARARDATNDVLKETLARLKVDL
>CP029606.1|QAZ38983.1|1233439_1234279_+|formamidopyrimidine-DNA-glycosylase
MPELPEVEVTRLSLVDRLRGAEIAGVRMGKPLRWPLGCAPSTLVGRRLLDVNRRGKYLWFALGARPGIAADAGGLLLHLGMSGSLNLSMHAAPPGPWDHFDLATSHGLLRLTDPRRFGAAVWSPSRDEGAAGKLLAGLGVEPLEAGFTATLLHARLRGRRVAIKQALLAGDIVVGVGNIYASEALFLAGIDPRTSGDRISLARCGRLVEAVRAVLSRAVALGGSTLRDFRDAHGLGGAFQNEARVYDREGEPCTTCGGTVRRIVQGQRSTYFCPRCQRR
>CP029606.1|QAZ38984.1|1234408_1236436_+|dynamin-family-protein
MESHPSASFAHSVDTLGHWRSALESRVRELARFLREHELLDEPATGLLESLRQRLAGEKLIVAFVAEFSRGKSELINAIFFADTGRRILPATPGRTTMCPVEIGYEADEPPGLALLPIDTRLQSPSLADLRRQPRAWQLTPLDMEDTEGLAQALTQVTQTRSVSVTMARDLGFWNDDAPDDNPPLDEQGCVEVPAWRHALINLPHPLLKRGLVVLDTPGLNAIGAEPELTVGLLPAAHATVFVLSADTGVTKSDLAIWRDHLGVQGVSRYVVLNKIDTLVDPLSTAEETEAQIERQCNDVAHTLNMPRERVFPLSAKQALTARVAGEEADLIASRLPALEEALSERLLPQRQQMLAQIGVEGIAIVEQQVGRRLTDRRRQIAEQLLELRGLRGKNATKVKLMLTRVDAEAAEFEQCISRLQAMRVVHTRMLKDALLDLSSDRLREHVGEMQEGIRSSLLQLGAKKAFMTLCGKLRERMKRAQSRSEEIHSMLEASFEMLNTEFGFSLLVAPTPELGRFVGDLDLIERNYVQYLGLTQALKLTQERFLEQFRRMLVSRLRVVFESASGELELWNKTASAQIDTQLRDRRRGFKRRREALERIQAAAGELESRLSELESQDARLQQLQQRVTELVQGTRLHADPRGDLSERDTVSTSELLDDSIDLLLDFEIDPARA
>CP029606.1|QAZ38985.1|1236432_1237539_+|A/G-specific-adenine-glycosylase
MSAAVFPPAPSGRTPASASGAGATATKASLAERVVTWQRTHGRHGLPWQRERDPYRVWLSEIMLQQTQVSTVLAYYARFIERFPDVAALARAALDDVLAAWAGLGYYSRARNLHRSAQAVMAEHGGRFPASAEQLATLPGIGRSTAAAIAAFCFGERAAILDGNVKRVLTRVLGFSADLAVARHERVLWARACELLPPASTDMPTYTQGLMDLGATVCLARKPNCLLCPLQGDCVARREGRPEAYPVKTRKLKRTRREHWWLWLEHAGAVWLQQRPATGVWAGLWSLPLLDDEAALGAVVRRWPVPVEPQPLIEHALTHFDWTLHPRRAVLDSVEGVEAALGPGRWIALDALDTVGLPAPLKKLLTAR
>CP029606.1|QAZ38986.1|1237535_1238114_-|Holliday-junction-branch-migration-protein-RuvA
MLGRLTGLLAEKSPPQVLIDVGGVGYEVDVPMSSFFNLPAIGEKVTLLTHFVVREDAQVLFGFLTAPERETFRMLIKISGVGPRTALSILSGLTVGDLAQAVTAQDASRLVKVPGIGKKTAERLLLELKGKLGADLGPAIGGKPASDAQADILQALIALGYSEREAQAAVKALPAEVGVSEGIKLALKALAR
>CP029606.1|QAZ38987.1|1238156_1238816_-|DNA-binding-response-regulator
MTHILLLEDLPEIRVWLKALALQVFPQAQITEAARVHDAREHISAQRFDLALVDLGLPDGSGVEVVAALREAQPEAQSVVVTIHDDDDHLFPALQAGAFGYLLKEQSREQLADQLRRISAGEPPLSPSIARRVIQYFAAQQRSQFREKTPLMPGVTLTERENEVLLRVAKGFTLPEIGVQLNLSRHTIADYVKQIYRKLNVSSRAEVALEAQRLGLFRR
>CP029606.1|QAZ38988.1|1238883_1240743_-|histidine-kinase
MLRHLSAPGRLFLLLWLGLCGGLPFAAPAAAQTTDLLTLRSAQVASVPSLTLAPPVGGGFETVALPDDWSAPGPAGEQVKWYRLRFDAPQQAAGALLAAYIPRVCSNLEVYLNGQLLYRGGSLREPVTRNCYQSQLVSLPAGLLHAAGNELALQVVGYPLPRVAGRQRAGGLSEVLIGPYPQLRELHERQRFWNVSFAQIVAATLVMIGVVMLALGWVRRVSHLKYFGVVSLGWALLSARIWWRDIPLPNGTLELLSCVAFVPLSVCAVLFLLRYCGMKWRAVDIALWTQCLVMPAGLLLAGPERLFSGAVLCYSVLALEVFAAIGFCLAHVWRTRRGEFWLLGSILALVVVVIGIEVGVQDSFLKLPNVHVIHFAIPLLFCVLAFRLVQTFANALTAAETARQQLEQRVYEISAEIERNFSHLAEVRVEQVAEKERKRIAADLHDDLGAKLLTIVHTSTDERISTLAREALEEMRLSVRGIAGKPVQLTDALADWRAETVSRLGDAGIEIEWHSTEPTTPRTLAARSYVQTTRVLREATSNLIKHSGASRATVTCRIGDEFQLVIRDNGRGIPLELDGRLDRGHGMASMKQRAKQMQGQCLIESGPGYGTVIRLTLPL
>CP029606.1|QAZ38989.1|1240835_1241798_+|phosphate-starvation-inducible-protein-PhoH
MILRHAFIPLDNIRLAHLCGTLDEHLRAIEAAFNVGITRRNESFRIEGAKAQAERATALLQSLYDRAKKPIAPESFQLALVEAAQGGGSSVRDAIPGDGAITLRTRHADLAGRTGNQTQYLRHILDHDIAFGIGPAGTGKTFLAVACAIDALERSAVQRIVLTRPAVEAGERLGFLPGDLAQKVDPYLRPLYDALYDLMGFERVTKAFEKGTIEIAPLAFMRGRTLNHAFVILDEAQNTTTEQMKMFLTRIGFGSKAVVTGDVSQIDLPKGVESGLIEAERVLRRVKGIAMTRFTAADVVRHPLVARIVEAYEAAARPEH

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP029606_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029606_3

2155984-2156111

Orphan

Consensus_repeat	Method
GCCTCGGATCGCGCCAGCCGTTGCGCAGCAAGGCACGCGCGGACG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029606_3

>merge|CP029606|3|2155984-2156111|CRISPRCasFinder
GCCTCGGATCGCGCCAGCCGTTGCGCAGCAAGGCACGCGCGGACGTGGTGCTGCAGAACGAACGGATTGGGGCTTCATTGACTGCCTCGGATCGCGCCAGCCGTTGCGAAGCAAGGCACGCGCGGACG

>CP029606|3|3|2155984-2156111|CRISPRCasFinder
GCCTCGGATCGCGCCAGCCGTTGCGCAGCAAGGCACGCGCGGACG	TGGTGCTGCAGAACGAACGGATTGGGGCTTCATTGACT
GCCTCGGATCGCGCCAGCCGTTGCGAAGCAAGGCACGCGCGGACG

Protein	Signature genes	Signature genes Name	Protein_function
CP029606.1\|QAZ39771.1\|2149205_2151872_-\|leucine--tRNA-ligase	unknown	unknown	gnl\|CDD\|234743
CP029606.1\|QAZ39783.1\|2161572_2162880_-\|MFS-transporter	unknown	unknown	gnl\|CDD\|379134
CP029606.1\|QAZ39782.1\|2161027_2161576_-\|DUF3833-domain-containing-protein	unknown	unknown	gnl\|CDD\|378992
CP029606.1\|QAZ39777.1\|2156892_2157237_-\|ribosome-associated-translation-inhibitor-RaiA	unknown	unknown	gnl\|CDD\|238308
CP029606.1\|QAZ41457.1\|2152407_2153073_-\|flagellar-motor-protein-MotA	unknown	unknown	gnl\|CDD\|223881
CP029606.1\|QAZ39774.1\|2153911_2154457_-\|outer-membrane-protein-assembly-factor-BamE	unknown	unknown	gnl\|CDD\|367908
CP029606.1\|QAZ39785.1\|2163448_2164711_-\|SAM-dependent-methyltransferase	unknown	unknown	gnl\|CDD\|225139
CP029606.1\|QAZ41456.1\|2146822_2147485_-\|methylamine-utilization-protein	unknown	unknown	gnl\|CDD\|259883
CP029606.1\|QAZ39773.1\|2153084_2153915_-\|4-hydroxy-tetrahydrodipicolinate-reductase	unknown	unknown	gnl\|CDD\|234595
CP029606.1\|QAZ39775.1\|2155021_2155978_-\|HPr-kinase/phosphorylase	unknown	unknown	gnl\|CDD\|235459
CP029606.1\|QAZ39769.1\|2147567_2148659_-\|DNA-polymerase-III-subunit-delta	unknown	unknown	gnl\|CDD\|235511
CP029606.1\|QAZ39778.1\|2157607_2158564_+\|magnesium-and-cobalt-transport-protein-CorA	unknown	unknown	gnl\|CDD\|213369
CP029606.1\|QAZ39772.1\|2151963_2152401_-\|biopolymer-transporter-ExbD	unknown	unknown	gnl\|CDD\|223917
CP029606.1\|QAZ39780.1\|2159795_2160236_-\|isomerase	unknown	unknown	gnl\|CDD\|378915
CP029606.1\|QAZ39781.1\|2160235_2161021_-\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|187608
CP029606.1\|QAZ41458.1\|2154576_2155014_+\|ferric-iron-uptake-transcriptional-regulator	unknown	unknown	gnl\|CDD\|236527
CP029606.1\|QAZ39770.1\|2148690_2149200_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|225527
CP029606.1\|QAZ39779.1\|2158601_2159780_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|341030
CP029606.1\|QAZ39784.1\|2162876_2163449_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|374318
CP029606.1\|QAZ39776.1\|2156199_2156670_-\|PTS-sugar-transporter-subunit-IIA	unknown	unknown	gnl\|CDD\|162350

Protein	Function_ID	Function_description	E-value
CP029606.1\|QAZ39771.1\|2149205_2151872_-\|leucine--tRNA-ligase	gnl\|CDD\|234743	PRK00390, leuS, leucyl-tRNA synthetase; Validated.	0
CP029606.1\|QAZ39783.1\|2161572_2162880_-\|MFS-transporter	gnl\|CDD\|379134	pfam13347, MFS_2, MFS/sugar transport protein. This family is part of the major facilitator superfamily of membrane transport proteins.	2.96263e-39
CP029606.1\|QAZ39782.1\|2161027_2161576_-\|DUF3833-domain-containing-protein	gnl\|CDD\|378992	pfam12915, DUF3833, Protein of unknown function (DUF3833). This is a family of uncharacterized proteins found in Proteobacteria.	1.45294e-100
CP029606.1\|QAZ39777.1\|2156892_2157237_-\|ribosome-associated-translation-inhibitor-RaiA	gnl\|CDD\|238308	cd00552, RaiA, RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and SpotY, is a stress-response protein that binds the ribosomal subunit interface and arrests translation by interfering with aminoacyl-tRNA binding to the ribosomal A site. RaiA is also thought to counteract miscoding at the A site thus reducing translation errors. The RaiA fold structurally resembles the double-stranded RNA-binding domain (dsRBD).	1.74888e-33
CP029606.1\|QAZ41457.1\|2152407_2153073_-\|flagellar-motor-protein-MotA	gnl\|CDD\|223881	COG0811, TolQ, Biopolymer transport proteins [Intracellular trafficking and secretion].	3.72374e-38
CP029606.1\|QAZ39774.1\|2153911_2154457_-\|outer-membrane-protein-assembly-factor-BamE	gnl\|CDD\|367908	pfam04355, SmpA_OmlA, SmpA / OmlA family. Lipoprotein Bacterial outer membrane lipoprotein, possibly involved in in maintaining the structural integrity of the cell envelope. Lipid attachment site is a conserved N terminal cysteine residue. Sometimes found adjacent to the OmpA domain (pfam00691).	8.29515e-32
CP029606.1\|QAZ39785.1\|2163448_2164711_-\|SAM-dependent-methyltransferase	gnl\|CDD\|225139	COG2230, Cfa, Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane].	8.57299e-111
CP029606.1\|QAZ41456.1\|2146822_2147485_-\|methylamine-utilization-protein	gnl\|CDD\|259883	cd04221, MauL, Methylamine utilization protein MauL. MauL is one of the products from the methylamine utilization gene cluster in Methylobacterium extorquens AM1. Mutants generated by insertions in mauL were not able to grow on methylamine or any other primary amine as carbon sources. MauL belongs to the blue or type I copper protein family. They are involved in electron transfer reactions with the Cu center transitioning between the oxidized Cu(II) form and the reduced Cu(I) form.	5.66997e-35
CP029606.1\|QAZ39773.1\|2153084_2153915_-\|4-hydroxy-tetrahydrodipicolinate-reductase	gnl\|CDD\|234595	PRK00048, PRK00048, dihydrodipicolinate reductase; Provisional.	8.33257e-139
CP029606.1\|QAZ39775.1\|2155021_2155978_-\|HPr-kinase/phosphorylase	gnl\|CDD\|235459	PRK05428, PRK05428, HPr kinase/phosphorylase; Provisional.	1.35203e-148
CP029606.1\|QAZ39769.1\|2147567_2148659_-\|DNA-polymerase-III-subunit-delta	gnl\|CDD\|235511	PRK05574, holA, DNA polymerase III subunit delta; Reviewed.	2.59749e-137
CP029606.1\|QAZ39778.1\|2157607_2158564_+\|magnesium-and-cobalt-transport-protein-CorA	gnl\|CDD\|213369	cd12835, EcCorA-like_1, Escherichia coli Mg2+ transporter CorA_like subgroup. A bacterial subgroup of the Escherichia coli CorA-Salmonella typhimurium ZntB_like (EcCorA_ZntB-like) family of the MIT superfamily of essential membrane proteins involved in transporting divalent cations (uptake or efflux) across membranes. This subgroup includes the Mg2+ transporters Escherichia coli CorA and Salmonella typhimurium CorA (which can also transport Co2+, and Ni2+). Structures of the intracellular domain of Vibrio parahaemolyticus and Salmonella typhimurium ZntB form funnel-shaped homopentamers, the tip of the funnel is formed from two C-terminal transmembrane (TM) helices from each monomer, and the large opening of the funnel from the N-terminal cytoplasmic domains. The GMN signature motif of the MIT superfamily occurs just after TM1, mutation within this motif is known to abolish Mg2+ transport through Salmonella typhimurium CorA, and Mrs2p. Natural variants such as GVN and GIN, such as occur in some ZntB family proteins, may be associated with the transport of different divalent cations, such as zinc and cadmium. The functional diversity of MIT transporters may also be due to minor structural differences regulating gating, substrate selection, and transport.	2.30884e-146
CP029606.1\|QAZ39772.1\|2151963_2152401_-\|biopolymer-transporter-ExbD	gnl\|CDD\|223917	COG0848, ExbD, Biopolymer transport protein [Intracellular trafficking and secretion].	9.9169e-39
CP029606.1\|QAZ39780.1\|2159795_2160236_-\|isomerase	gnl\|CDD\|378915	pfam12680, SnoaL_2, SnoaL-like domain. This family contains a large number of proteins that share the SnoaL fold.	3.76179e-14
CP029606.1\|QAZ39781.1\|2160235_2161021_-\|short-chain-dehydrogenase	gnl\|CDD\|187608	cd05350, SDR_c6, classical (c) SDR, subgroup 6. These proteins are members of the classical SDR family, with a canonical active site tetrad and a fairly well conserved typical Gly-rich NAD-binding motif. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRS are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes have a 3-glycine N-terminal NAD(P)(H)-binding pattern (typically, TGxxxGxG in classical SDRs and TGxxGxxG in extended SDRs), while substrate binding is in the C-terminal region. A critical catalytic Tyr residue (Tyr-151, human 15-hydroxyprostaglandin dehydrogenase (15-PGDH) numbering), is often found in a conserved YXXXK pattern. In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, 15-PGDH numbering) and/or an Asn (Asn-107, 15-PGDH numbering) or additional Ser, contributing to the active site. Substrates for these enzymes include sugars, steroids, alcohols, and aromatic compounds. The standard reaction mechanism is a proton relay involving the conserved Tyr and Lys, as well as Asn (or Ser). Some SDR family members, including 17 beta-hydroxysteroid dehydrogenase contain an additional helix-turn-helix motif that is not generally found among SDRs.	1.8797e-57
CP029606.1\|QAZ41458.1\|2154576_2155014_+\|ferric-iron-uptake-transcriptional-regulator	gnl\|CDD\|236527	PRK09462, fur, ferric uptake regulator; Provisional.	2.57398e-60
CP029606.1\|QAZ39770.1\|2148690_2149200_-\|hypothetical-protein	gnl\|CDD\|225527	COG2980, RlpB, Rare lipoprotein B [Cell envelope biogenesis, outer membrane].	2.331e-22
CP029606.1\|QAZ39779.1\|2158601_2159780_+\|hypothetical-protein	gnl\|CDD\|341030	cd17477, MFS_YcaD_like, YcaD and similar transporters of the Major Facilitator Superfamily. This family is composed of Escherichia coli MFS-type transporter YcaD, Bacillus subtilis MFS-type transporter YfkF, and similar proteins. They are uncharacterized transporters belonging to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	2.87539e-47
CP029606.1\|QAZ39784.1\|2162876_2163449_-\|hypothetical-protein	gnl\|CDD\|374318	pfam16036, Chalcone_3, Chalcone isomerase-like. Chalcone_3 is a family of largely bacterial members.	2.08665e-10
CP029606.1\|QAZ39776.1\|2156199_2156670_-\|PTS-sugar-transporter-subunit-IIA	gnl\|CDD\|162350	TIGR01419, nitro_reg_IIA, PTS IIA-like nitrogen-regulatory protein PtsN. This model describes a full-length protein of about 160 residues closely related to the fructose-specific phosphotransferase (PTS) system IIA component. It is a regulatory protein found only in species with a phosphoenolpyruvate-protein phosphotransferase (enzyme I of PTS systems) and an HPr-like phosphocarrier protein, but not all species have a IIC-like permease. Members of this family are found in Proteobacteria, Chlamydia, and the spirochete Treponema pallidum. [Signal transduction, PTS].	3.2981e-44

>CP029606.1|QAZ39775.1|2155021_2155978_-|HPr-kinase/phosphorylase
MKPTVISAEALFEAHRTALRWEWLAGHAHPERRFDEVAVRDAQSAADLVGYLNYIHPYRVQIVGRREVRYLVDVPPEDQERRISRIVTLEPPVVIVADQQTPPDRLVAMCERADIPLFVTEESAGHVIDVLRAHLSQHFADRTTRHGVFMDILGLGVLLTGESGLGKSELGLELISRGHGLVADDAVDLYRVSQTALEGRCPDLLLNLLEVRGIGLLDIKAIFGETAVRRKMRLKLIVHLVRKETMERDFERLPYEPLYEDVLDVPVLKAVIAVDAGRNLAVLVEAAVRNTILKLRGIDTYQEFIARHRIAMEGDEPI
>CP029606.1|QAZ41458.1|2154576_2155014_+|ferric-iron-uptake-transcriptional-regulator
MTTHAEDLKSSGLKATLPRLKILEVFQTSAVRHLTAEDVYKHLLADGSDIGLATVYRVLMQFEQAGILSRNHFESGKSVFELNEGKHHDHLVCVVCGRVEEFYDAEIEKRQLQIARERGYELQDHSLALYVICGRDGCKGSNSPR
>CP029606.1|QAZ39774.1|2153911_2154457_-|outer-membrane-protein-assembly-factor-BamE
MPSSPHLRALCLLLASVVLGGCSSMRSTSDRLFGLITPYRVEVVQGNVVTQEMAAAVKPGMTRAQVRDTLGSPLLADIFHADRWDYVFTIRRPGAAYQQRRVTVLFDGDTMKSFEADELPSERDFVSSIDTKSTKGAKVPTLALNDEQLKALPMPAKGSIPEPNSAPQGPARDYPPLEATP
>CP029606.1|QAZ39773.1|2153084_2153915_-|4-hydroxy-tetrahydrodipicolinate-reductase
MKAVAAAERRRIAIAGASGRMGHMLIEAVLASDDCVLAGALDRPDSPQLGQDAAGFLGQRSGVMITDDLRTGLANAQVLIDFTRPEGTLAHLQACRELGVQLVIGTTGFDEAGKARISEAAQHIAIVMAPNMSVGVNVVLQLLATAAKALSQGYDIEIIEAHHRHKVDAPSGTALKMGEVVADALGRDLKSCAVYGREGVTGERDPSTIGFATVRGGDIVGDHTVLFAGTGERIEITHKSSSRATYAQGSLRAVRFLAGQQRGLYGMEAVLGLAAT
>CP029606.1|QAZ41457.1|2152407_2153073_-|flagellar-motor-protein-MotA
MHFWSEGDAITRLVAALLLLMSVSAWVLILWKSWLLRRVRADLARAVPAFWAAPDLATARTQLQTFDREAALVPLLDAGLQSARGGTLEAAGARASQLTRRLRDALHGVLMQLQFGQVLLASIGATAPFIGLFGTVWGIYHALLGIAAAGNLSIDRISGPVGEALVMTAAGLAVAIPAVLAYNVFGKLVGACEAELEGFAHDLREMLLDDASAPRPGTERG
>CP029606.1|QAZ39772.1|2151963_2152401_-|biopolymer-transporter-ExbD
MAFGRLERTALPQPMSDINMTPLIDVMLVLLVIFMISAPLMTSSLRLDLPRADATTPSDTPSFVSVALTPDGTLHLGDEALADAAFDARIREAARRQPGLEVQLRADQSVPYGRVAALIGRLQSAGLNRIAFVAQPTEAVPPSSN
>CP029606.1|QAZ39771.1|2149205_2151872_-|leucine--tRNA-ligase
MSTPHPAPASAYEPGAIEAAAHAHWTARDAHRVIEDTGRPKFYACSMLPYPSGKLHMGHVRNYTINDMMARYLRMKGYNVLMPMGWDAFGLPAENAAIDKKVAPAQWTRDNIADMKSQMQPLGLAFDWSREVATCDPGYYKWNQWFFLKLLEKGIAYKKTQVVNWDPVDQTVLANEQVIDGKGWRSGAPVERREIPGYYLAITQYADELLANVADPASPGFLHGWPERVRLMQEHWIGKSAGVRFAFPHEIRDASGALIGDGLMHVFTTRADTIMGVTFCAVAPEHPLATHAAASDPDLAAFIETCKAGGTTEAELATKDKEGRPTGLFVKHPLSGAPVPVWVGNYVLMGYGDGAVMGVPAHDERDFAFAKKYGIDILQVVHVDGEHFSYDHWQDWYADKQRGVTINSGNLSGLRYPVAVDAVAAALAAQGLGDRKTTWRLRDWGISRQRYWGTPIPIIHCAHCGDVPVPEQDLPVLLPEDLIPDGSGNPLNKSAAFLNVACPKCGAPAKRETDTMDTFVDSSWYYMRYCCPDSDEAMVDTRNDYWMPMDQYIGGIEHAVLHLLYARFWTKAMRDCGLVKFDEPFTKLFTQGMLLNESYYREDSSGKKRWFYPSEVEVQFDDKGHPVGAIAREDGQPVQLGGIEKMSKSKNNVVEPRDIIAKFGADTARLFTMFAGPPDQSAAWSDSGAEGSFRYLRRLWAFATKQREAVQAAGTDFAGASRAAIDLRRDVHLLLRQVSHDYDRLQYNTVVSGAMKLLNALESAALTDTAADRAALREGLGILLRALYPAAPHIAHALWQDLGYAEAHGDLLDAPWPVVDEQALVQDEIELVLQVNGKLRGALKVPASADRAAIEAAALASPGLAKFAEGRTPKKVVVVPGRLVNVVV
>CP029606.1|QAZ39770.1|2148690_2149200_-|hypothetical-protein
MPPMPRRTTLKAALALSALALSGCGFQLRRPPKLSFSTVQLVGFPQRSPFTEQLRRSIEASGTTRVVESPAQAQVVLEALEDVRDKSVAAQTAAGQVREFTLRTRLRFRLRTPGGRLLIRDTELLLSRDMSYNETNALAKEQEEAMLYRGMQSDIVDQVMRQLAAVPAP
>CP029606.1|QAZ39769.1|2147567_2148659_-|DNA-polymerase-III-subunit-delta
MQIKPDQLDAHLKRGLRPLYTLHGDEPLLALEASDAIRAAARDAGHTEREVHHVAGAHFDWSSLLGAASSMSLFAEAKIVEIRIPSGKPGKDGSQALQHYCEHLPEGVVTLVTLPRLDRQQSGSAWFGALESAGVTLRLDPVERQALPQWIAQRLAAQNQRVAADEEGQRTLAFFADRVEGNLLAAQQELTKLGLLYPAGELSFEQVEAAVLNVARYSVFKLGEAVLAGQVSRVLRMLDGLRAEGEAAVLVHWTLAEDIRALRRCKDAVAAGKPLPMALRENRIWGLKERLFERALPRLADGTIEHLIEAAHVCDGLVKGLKHPQWPQDPWIGLQRLALQLAGSMQAAQLPRGAPSQRLVLQA
>CP029606.1|QAZ41456.1|2146822_2147485_-|methylamine-utilization-protein
MRGGRPGSAAIASCPSMKPLHRRLFGLPPLLLLLAGLPAHAVPLVITVTDEEGTPLADAVVAVQVKGTPPTASPGASAELGQRNKRFTPAVLAVQTGTAVSFPNFDTVRHHVYSFSPTKTFELKLYAGTPAAPVLFDKPGTAVLGCNIHDAMTAYVRVVDTPYFARTDSAGRAQLELPAGDHQLQTWHALLGVDGPAPVQPLKLGSTPATAAVKLNAKAP
>CP029606.1|QAZ39776.1|2156199_2156670_-|PTS-sugar-transporter-subunit-IIA
MNRLSAILPASNVLVDVDATSKKRVFEQAGLLFENRHAIARATVTDNLFARERLGSTGLGHGVAIPHGRIKGLKNPLAAVIRMQQPIGFDAPDDEPVSLLIFLLVPEAATQRHLEILSEIAELLSDRALRDKLKTEPDAAKLHELIANWEPLKSVA
>CP029606.1|QAZ39777.1|2156892_2157237_-|ribosome-associated-translation-inhibitor-RaiA
MNLTISGHHLEVTPSLREYVLTKLDRVTRHFDQVVDINVLLSVEKQKEKEKRQKAEVNVHVKGKDIFVESAHEDLYAAIDELMDKLDRQVCRHKDKVQDHHHASAKRLDAPDLQ
>CP029606.1|QAZ39778.1|2157607_2158564_+|magnesium-and-cobalt-transport-protein-CorA
MLNVFTLANGRLFQEEIESAAALAHVRPVWVDLESPTPEEKGWLAGRFGLHIPENIVDDDLEESARFYEEDNGELHIRSDFLIHDEATRNVRVAFILHDKVLFSVHAEDLPVFRLLRLRARRTPALIEDAKDVLLKLYDADAEYSADSLEGIYDELEKVSSRVLQSEVNDQTAAEVLAAIARQEDLNGRIRRNVMDTRRAVSFMMRSRLLNAEQFEEARQILRDIDSLDSHTAFLFDKINFLMDAIVGFININQNKIIKLFSVASVALLPPTLIASIYGMNFKAMPELDWSLGYPYALGLMVASVIAPFWYFRRKGWL
>CP029606.1|QAZ39779.1|2158601_2159780_+|hypothetical-protein
MSSDAPVGRGLWRIGAGTTLVVLAFSVVNPVLAVTLQRRGVNAGAIGLFAMLPFLTVATMIPVMPRVFARLGVIRAYRGGLVLGVLSLAGYALTDSYLAWCCWSVLGALGAAAEWNGTEALIAFNAPPARRGRFTGLYQTALGAALAVGPLLPGALQWLLPAGQPLHTVWLLWGAAAIYALALGVTAGPAVGRLRASHTGGSHDSLRAALRARPALVWIAFAGGVFEAGLGGITAAYGSQLGMSLGVATSIAGALGVGSFVLQYPAGWLADHAPVRRVFGVAGALLLLSVLAFGLAPRVAVLFWVAAFLWGAIGGALYTLTMVRVAHEFTGRSTIAGTAAMITGYTAGGAVGPAVSGLMLERCGVPGQSLWLAALAVSVIAVALRMRAGPEG
>CP029606.1|QAZ39780.1|2159795_2160236_-|isomerase
MPASTDDTRVARVIARFEHLTREDLPRLGEIYTEGALFKDPFNEVEGLAAVQAVFAHMFDALDEPRFVVRDVIVQGDQCLLTWDFLFRFKRYRYELQTVRGASHLRFAADGRIAQHRDYWDAAEELYEKLPAIGVLMRWLKRRASR
>CP029606.1|QAZ39781.1|2160235_2161021_-|short-chain-dehydrogenase
MSLNPPLTEWSGQLAWLVGASSGIGRATASALHAQGATVVVSARKAADLERFVQEHPGSHAVVLDATDHAAMQVAARRVRGLMGRIDLAMYCAGHYKPQRATAFDLDEMLLHQQVNYVGALHLVDAVLPGLLEQAAAGSGGHLSLVGSVAGYRGLPNSLAYGPTKAALINLAQALYLDLHAKGIGVSIVNPGFVESPLTAQNDFAMPALLTPEQAAQAILAGWASGVFELHFPKRFTLWMKLLSHVGDGLYFKAVRRATGL
>CP029606.1|QAZ39782.1|2161027_2161576_-|DUF3833-domain-containing-protein
MNKRTLLVVVGATVALAATGGLTGCAGPTVADYAAEQPTLDLARYFNGTLDAHGVFTDRSGKVVKRFHVVMKCSWQGHDGVLDEDFTYSDGTKQRRVWRLKKLDGGRYTGTADDVSGEAQGQAAGNAFNWRYTLRLPVDGKVIDVQFDDWMYLMDERVMLNKAVMSKFGVRLGEVTLSFYKR
>CP029606.1|QAZ39783.1|2161572_2162880_-|MFS-transporter
MSERAMAALGLPRATAGLASSGDGLRYGALGLPLAFVALPLYVLLPNHYAAQFGVPLAALGAVLLGARLLDALADPLIGRWVDRLFARKALSAWWAATIAALVLAIGFRALFFPAVAGTAALLAWCAIGLAFTYLGYSVVSVVHQAWGARLGGDEAGRARVVAWREGAAVVGVLIASVLPSAAGLQATTLVFAVLLLAGLVLLRQAPRAVLRPPLAAGGAASVRPFRVAAFRRLLAIFIVNGIASAVPATLVLFFIRDRLQAPAWEPAFLAAYFAAGALSIPLWLRSVARFGLARSWLAGMGLAIATFGWAATLGAGDTLGFLAVCIASGAALGADLTLPGALLTGVIQRAGHAGHGEGAYLGWWNFATKLNLALAAGVALPLLQATGYETGARDPQALAALSFAYCLLPCALKLGAALLLWALWLRHPDAGDLA
>CP029606.1|QAZ39784.1|2162876_2163449_-|hypothetical-protein
MERRACLQTLAAAACSVAVPALRAQAAARPPAEALAELPGARLQGSGRLRYFGLHIYDARLWVGPDYPVTAPGREDYAAHRFALELEYARSLDGEKIAERSIDEMQRAGPLPDAQRQGWLAFMTTTFPNVEAGSRITGLHRPGEMARFYFNGQPAGELRDPTFAQRFFGIWLGPQTSQPALRRSLLGGSP
>CP029606.1|QAZ39785.1|2163448_2164711_-|SAM-dependent-methyltransferase
MNTTTHGGTVPRLEPATLPPSAPAAARAVFRLLTQLRHGQLDVQMPDGTSARFGGLREGGDVRAAIRLRNWAVCGAALRSGDIGFAESYIAGDWSTPDLAALLRLFVANREEIETLVYGSWWGSLLYRARHLLNRNSRRGSKKNIHAHYDLGNAFYALWLDETMSYSSAWFDGDPRRSTAEGQHAKIRRALTEAGVTAGSRVLEIGCGWGGVAEVAARDFGAHVTGVTLSSEQLDYARQRLQRAGLASRGDLRFQDYRDIPDGPFDAVVSIEMFEAVGRAYWDGYFRTLSDKLKPGGRACIQSITIRDDLFDRYMKSTDFIQQYIFPGGLLPSIGAFEAEARRAGFEVETTFRFGPDYAETLRRWRERFMGEEARVRQLGFDTRFVRIWEFYLAYCEAAFAAGNTDIVQFTLRKPGAAGV

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Crispr_ID: CP029606_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP029606_4

2422115-2422215

Orphan

Consensus_repeat	Method
CGTGCGCAGGCCCGGGTCGATGCCGAG	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP029606_4

>merge|CP029606|4|2422115-2422215|CRISPRCasFinder
CGTGCGCAGGCCCGGGTCGATGCCGAGGATCCTCATGCGGCGCTCCCGCGGTCGCGGCCGAAGTCATGACCTGCCGTGCGCAGGCCCGGGTCGATGCCGAG

>CP029606|4|4|2422115-2422215|CRISPRCasFinder
CGTGCGCAGGCCCGGGTCGATGCCGAG	GATCCTCATGCGGCGCTCCCGCGGTCGCGGCCGAAGTCATGACCTGC
CGTGCGCAGGCCCGGGTCGATGCCGAG

Protein	Signature genes	Signature genes Name	Protein_function
CP029606.1\|QAZ40000.1\|2417161_2417782_+\|DNA-binding-response-regulator	unknown	unknown	gnl\|CDD\|225107
CP029606.1\|QAZ39996.1\|2412580_2413090_-\|cytochrome-C	unknown	unknown	gnl\|CDD\|275287
CP029606.1\|QAZ39998.1\|2413789_2415646_-\|PQQ-dependent-dehydrogenase,-methanol/ethanol-family	unknown	unknown	gnl\|CDD\|199835
CP029606.1\|QAZ41472.1\|2425757_2426798_-\|tRNA-dihydrouridine-synthase-DusB	unknown	unknown	gnl\|CDD\|129820
CP029606.1\|QAZ40001.1\|2417854_2419993_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225822
CP029606.1\|QAZ39997.1\|2413093_2413708_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224276
CP029606.1\|QAZ40003.1\|2420744_2421575_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270411
CP029606.1\|QAZ39995.1\|2410742_2412485_+\|PQQ-dependent-dehydrogenase,-methanol/ethanol-family	unknown	unknown	gnl\|CDD\|274419
CP029606.1\|QAZ40007.1\|2423878_2425474_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/inosine-monophosphate-cyclohydrolase	unknown	unknown	gnl\|CDD\|234854
CP029606.1\|QAZ40006.1\|2423200_2423827_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	unknown	unknown	gnl\|CDD\|153251
CP029606.1\|QAZ40008.1\|2425521_2425761_-\|Fis-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|179348
CP029606.1\|QAZ40010.1\|2427434_2428628_-\|patatin	unknown	unknown	gnl\|CDD\|132847
CP029606.1\|QAZ40013.1\|2429931_2431938_+\|short-chain-dehydrogenase	unknown	unknown	gnl\|CDD\|235962
CP029606.1\|QAZ40012.1\|2429154_2429703_-\|poly-granule-associated-protein	unknown	unknown	gnl\|CDD\|377530
CP029606.1\|QAZ39994.1\|2409669_2410566_+\|quinoprotein-relay-system-zinc-metallohydrolase-1	unknown	unknown	gnl\|CDD\|275351
CP029606.1\|QAZ40005.1\|2422229_2423204_-\|phosphatidate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|226955
CP029606.1\|QAZ40011.1\|2428624_2429119_-\|hypothetical-protein	unknown	unknown	unknown
CP029606.1\|QAZ39999.1\|2415825_2417172_+\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|226951
CP029606.1\|QAZ40002.1\|2420274_2420748_+\|cytochrome-c-550-PedF	unknown	unknown	gnl\|CDD\|275287
CP029606.1\|QAZ40009.1\|2426914_2427397_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|224159

Protein	Function_ID	Function_description	E-value
CP029606.1\|QAZ40000.1\|2417161_2417782_+\|DNA-binding-response-regulator	gnl\|CDD\|225107	COG2197, CitB, Response regulator containing a CheY-like receiver domain and an HTH DNA-binding domain [Signal transduction mechanisms / Transcription].	6.13665e-53
CP029606.1\|QAZ39996.1\|2412580_2413090_-\|cytochrome-C	gnl\|CDD\|275287	TIGR04494, cytochrome_c550, cytochrome c-550 PedF. Members of this family are c-type cytochromes with some remote similarity to the sulfur oxidation cytochrome SoxX.	4.1052e-35
CP029606.1\|QAZ39998.1\|2413789_2415646_-\|PQQ-dependent-dehydrogenase,-methanol/ethanol-family	gnl\|CDD\|199835	cd10277, PQQ_ADH_I, Ethanol dehydrogenase, a bacterial quinoprotein (PQQ-dependent type I alcohol dehydrogenase). This bacterial family of homodimeric ethanol dehydrogenases utilize pyrroloquinoline quinone (PQQ) as a cofactor. It represents proteins whose expression may be induced by ethanol, and which are similar to quinoprotein methanol dehydrogenases, but have higher specificities for ethanol and other primary and secondary alcohols. Dehydrogenases with PQQ cofactors, such as ethanol, methanol, and membrane-bound glucose dehydrogenases, form an 8-bladed beta-propeller.	0
CP029606.1\|QAZ41472.1\|2425757_2426798_-\|tRNA-dihydrouridine-synthase-DusB	gnl\|CDD\|129820	TIGR00737, Probable_tRNA-dihydrouridine_synthase, putative TIM-barrel protein, nifR3 family. This model represents one branch of COG0042 (Predicted TIM-barrel enzymes, possibly dehydrogenases, nifR3 family). This branch includes NifR3 itself, from Rhodobacter capsulatus. It excludes a broadly distributed but more sparsely populated subfamily that contains sll0926 from Synechocystis PCC6803, HI0634 from Haemophilus influenzae, and BB0225 from Borrelia burgdorferi. It also excludes a shorter and more distant archaeal subfamily.The function of nifR3, a member of this family, is unknown, but it is found in an operon with nitrogen-sensing two component regulators in Rhodobacter capsulatus.Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. [Unknown function, General].	7.34444e-127
CP029606.1\|QAZ40001.1\|2417854_2419993_-\|sigma-54-dependent-Fis-family-transcriptional-regulator	gnl\|CDD\|225822	COG3284, AcoR, Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription].	2.81918e-157
CP029606.1\|QAZ39997.1\|2413093_2413708_-\|hypothetical-protein	gnl\|CDD\|224276	COG1357, COG1357, Pentapeptide repeats containing protein [Function unknown].	6.54203e-21
CP029606.1\|QAZ40003.1\|2420744_2421575_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270411	cd13693, PBP2_polar_AA, Substrate binding domain of polar amino-acid uptake ABC transporter; the type 2 periplasmic binding protein fold. This group includes the periplamic-binding protein component of putative polar amino acid ABC transporter. The polar amino-acid binding domain belongs to the type 2 periplasmic binding protein fold superfamily (PBP2), whose many members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. The PBP2 proteins are typically comprised of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	6.77621e-08
CP029606.1\|QAZ39995.1\|2410742_2412485_+\|PQQ-dependent-dehydrogenase,-methanol/ethanol-family	gnl\|CDD\|274419	TIGR03075, PQQ_enz_alc_DH, PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.	0
CP029606.1\|QAZ40007.1\|2423878_2425474_-\|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/inosine-monophosphate-cyclohydrolase	gnl\|CDD\|234854	PRK00881, purH, bifunctional phosphoribosylaminoimidazolecarboxamide formyltransferase/IMP cyclohydrolase; Provisional.	0
CP029606.1\|QAZ40006.1\|2423200_2423827_-\|1-acyl-sn-glycerol-3-phosphate-acyltransferase	gnl\|CDD\|153251	cd07989, LPLAT_AGPAT-like, Lysophospholipid Acyltransferases (LPLATs) of Glycerophospholipid Biosynthesis: AGPAT-like. Lysophospholipid acyltransferase (LPLAT) superfamily member: acyltransferases of de novo and remodeling pathways of glycerophospholipid biosynthesis which catalyze the incorporation of an acyl group from either acylCoAs or acyl-acyl carrier proteins (acylACPs) into acceptors such as glycerol 3-phosphate, dihydroxyacetone phosphate or lyso-phosphatidic acid. Included in this subgroup are such LPLATs as 1-acyl-sn-glycerol-3-phosphate acyltransferase (AGPAT, PlsC), Tafazzin (product of Barth syndrome gene), and similar proteins.	1.42385e-37
CP029606.1\|QAZ40008.1\|2425521_2425761_-\|Fis-family-transcriptional-regulator	gnl\|CDD\|179348	PRK01905, PRK01905, Fis family transcriptional regulator.	1.09188e-35
CP029606.1\|QAZ40010.1\|2427434_2428628_-\|patatin	gnl\|CDD\|132847	cd07208, Pat_hypo_Ecoli_yjju_like, Hypothetical patatin similar to yjju protein of Escherichia coli. Patatin-like phospholipase similar to yjju protein of Escherichia coli. This family predominantly consists of bacterial patatin glycoproteins, and some representatives from eukaryotes and archaea. The patatin protein accounts for up to 40% of the total soluble protein in potato tubers. Patatin is a storage protein, but it also has the enzymatic activity of a lipid acyl hydrolase, catalyzing the cleavage of fatty acids from membrane lipids. Members of this family have also been found in vertebrates.	1.10302e-31
CP029606.1\|QAZ40013.1\|2429931_2431938_+\|short-chain-dehydrogenase	gnl\|CDD\|235962	PRK07201, PRK07201, SDR family oxidoreductase.	0
CP029606.1\|QAZ40012.1\|2429154_2429703_-\|poly-granule-associated-protein	gnl\|CDD\|377530	pfam05597, Phasin, Poly(hydroxyalcanoate) granule associated protein (phasin). Polyhydroxyalkanoates (PHAs) are storage polyesters synthesized by various bacteria as intracellular carbon and energy reserve material. PHAs are accumulated as water-insoluble inclusions within the cells. This family consists of the phasins PhaF and PhaI which act as a transcriptional regulator of PHA biosynthesis genes. PhaF has been proposed to repress expression of the phaC1 gene and the phaIF operon.	1.58097e-50
CP029606.1\|QAZ39994.1\|2409669_2410566_+\|quinoprotein-relay-system-zinc-metallohydrolase-1	gnl\|CDD\|275351	TIGR04558, beta-lactamase_domain-containing_protein, quinoprotein relay system zinc metallohydrolase 1. By homology, members are Zn metallohydrolases in the same family as the SoxH protein associated with sulfate metabolism, Bacillus cereus beta-lactamase II (see PDB:1bc2), and, more distantly, hydroxyacylglutathione hydrolase (glyoxalase II). All members occur in genomes with both PQQ biosynthesis and a PQQ-dependent (quinoprotein) dehydrogenase that has a motif of two consecutive Cys residues (see TIGR03075). The Cys-Cys motif is associated with electron transfer by specialized cytochromes such as c551. All these genomes also include a fusion protein (TIGR04557) whose domains resemble SoxY and SoxZ from thiosulfate oxidation. A conserved Cys in this fusion protein aligns to the Cys residue in SoxY that carries sulfur cycle intermediates. In many genomes, the genes for PQQ biosynthesis enzymes, PQQ-dependent enzymes, their associated cytochromes, and members of this family are clustered. Note that one to three closely related Zn metallohydrolases may occur; this family represents a specific clade among them. [Unknown function, Enzymes of unknown specificity].	1.16098e-168
CP029606.1\|QAZ40005.1\|2422229_2423204_-\|phosphatidate-cytidylyltransferase	gnl\|CDD\|226955	COG4589, COG4589, Predicted CDP-diglyceride synthetase/phosphatidate cytidylyltransferase [General function prediction only].	2.79768e-66
CP029606.1\|QAZ39999.1\|2415825_2417172_+\|sensor-histidine-kinase	gnl\|CDD\|226951	COG4585, COG4585, Signal transduction histidine kinase [Signal transduction mechanisms].	1.41676e-37
CP029606.1\|QAZ40002.1\|2420274_2420748_+\|cytochrome-c-550-PedF	gnl\|CDD\|275287	TIGR04494, cytochrome_c550, cytochrome c-550 PedF. Members of this family are c-type cytochromes with some remote similarity to the sulfur oxidation cytochrome SoxX.	1.56858e-72
CP029606.1\|QAZ40009.1\|2426914_2427397_+\|hypothetical-protein	gnl\|CDD\|224159	COG1238, COG1238, Predicted membrane protein [Function unknown].	5.91793e-31

>CP029606.1|QAZ40003.1|2420744_2421575_+|ABC-transporter-substrate-binding-protein
MISRRRLLGAAAALAPMSAPLRAEGSALERVRRSGRLVVAVYQDMPPFNLNGQGVDVDLAAVLADSVGVPLSLLPIPAGESVGDDLRNAVWRGHYLGWGPADVMLHVPMDRPLIEANPQVEVFGAYYRETVMLAWDSERGPTPETIEALRGQKIAVAGVSLPGYLLASADSGALRDTLSTQHADGVAAAKTLLSGEVVAAAGLASELEATLAGQPRYKIVPLPPIPRAPRNGWVVGCAVKRGATDLAQVMQRRLIDLNNGTGLRDLFRRHNVVWRG
>CP029606.1|QAZ40002.1|2420274_2420748_+|cytochrome-c-550-PedF
MNFRTQCLRPLVALSLIAGAAGAYAHGDVTPQAVDTQSLPALGDAWRAENPYRKNDEAIKIGTSAYNQNCARCHGLEAISGGIAPDLRKLDGECATLKDDKKKAACVKEMDEYYATTVRHGRTRNGAVYMPPFEGVMQQEAVWAIKSYLETRREKPL
>CP029606.1|QAZ40001.1|2417854_2419993_-|sigma-54-dependent-Fis-family-transcriptional-regulator
MTASTTATRAAQRDSRRPSGFGHSATSVWLPPDPGHVDTIAQSHERCASLRLSPIRPPDHTPLMRSDLAVARERNRCLSLHAVPVMEMLLEQILATQSMVLLTDVQGTVLHSIGHDDFLTRASKVALAPGVNWSESSKGTNAIGTALVTETPTIVHADEHFVHANQFLTCSSSPIFDPRGNLVGVLDVSGDHHSFHVHTMGLVKMSARMIQNHWLIEDSHQTLRLHFHLRRDYLGTLMEGIVSVGQDGKLLAANRAALDMLRLSGAALRMNTVTGLFGVSLGALVDHFGSTLSTPLELSLPDGRQIHANARFNGTGWHQLGRVRDDQPEALAHEAAREPAARDALPDTAREPTAHPNAVPPSPSLRQLQTGDARMDDVVTRVKRVLDRDIPVLIQGETGTGKEMLARAIHQGSRRASGPFIAVNCASIPETLIESELFGYEEGAFTGARRKGAVGKVLQAHGGTLFLDEIGDMPLGLQARLLRVLQEREVTPLGGTRALPVDVSVISATHQPLRELIDRKQFREDLYYRLNGLVVQLPALRERTDLLALTEKLLKRECRGRLLRLDAEVLRLMQACRWPGNIRQLATVLRTAVAMAGDDAVITVDHLSEDFLQDARRTLDEEPASVAASRPPVSMAQHVSPHPSDAAAPDGLGSVQVGEAPSGRSTLHQLEHDTVRRALAEAGGNISVAARRLGISRNTIYRKLYWPPGAGR
>CP029606.1|QAZ40000.1|2417161_2417782_+|DNA-binding-response-regulator
MLLDDHAVVRAGYRQLIDAEPDMCVVAACATSAQACEQLRLQQIDVAVVDLSLKDDSGLQAIQRLRARLASLRVLVFTMHAQQSYALQALRAGALGYLTKDSDPQAMLDAVRQVAQGRRVFSSELVEAMLDPLEVERGGPLRQLTPREFDVLRLAAQGLATRAIAEAMHLGDKTVLNYMSLIRQKLGAANDLQLLRLAAQNGLVEL
>CP029606.1|QAZ39999.1|2415825_2417172_+|sensor-histidine-kinase
MDLSKRLVVWLALLAALWLGVTLVYTAVALRSGIQDEMQGANAVVELLSTAAEANLGDAHSQLQLQALLAEGHARHLRVRWADEPSQDNLEQVSLLHDYARRLAPAGKPVPQHRIAIGPRTLIVEPAPDSEIDEVLGDVLPLLLLLLVAGGAMLFGVWWIVRQALAPASVLCAGLARLQSGQTEPGFPALRLREYAAIARGIDELAAGLATARCEQSRLTQRLIDVQERERRKLARDLHDEFGQHLTAMSATASLLQRHAARLDPVEQARCADQMVASLGCIRLQLRTLLSRLRPHGLEAEGLAHELAGLIDRARAHHATVTIRADIAVPLPALPEDAALALYRSLQEALTNAYRHSGAGEVQVRIDVPAAQRVRMRVIDDGCGRASALPRGGLGLLGMRERLAMVGGGLRLVDNAGPGLCVEVWVPVPAVAVTGSLEGEMLDTRLAA
>CP029606.1|QAZ39998.1|2413789_2415646_-|PQQ-dependent-dehydrogenase,-methanol/ethanol-family
MSKHPVRHALSVAAALAVLGLSQGAHAVKNVTWEDISNDDRTSTDVLSYGLGLKAQRYSPLKQISTANVQKLVPAWSHSFGGEKQRGQEGQVLVHDGVIYATSSYSRFTALDAKTGRQLWTYEHRLPDDIRPCCDVVNRGPAIYGDKVYFGTLDARVVALDRATGKVVWNEKFGDHKVGYTMTGAPFIVKDKKSGRVLLIHGSSGDEFGVVGWLFARDPDTGAEVWARPMVEGHMGRLNGKDSTVTGDAKAPSWPRDKDGKLVEAWHQGGGAPWQTASFDAENNTIVIGTGNPAPWNTWKRTKEGDDPRNWDSLFTSGQAYVDASTGELKGFFQHTPNDAWDFSGNNSIVLFEYKDPKSGKLVKAGAHADRNGFFFVTDREKLATGAGYPNKPTALLGAWPFVDGITWAKGFDLKTGKPIENNNRPPAPKPGTDKGESIFVSPPFLGGTNWMPMSYSPDTGLFYIPANHWAMDYWTEHLTYKAGSAYLGQGFRIKRLYEDHVGTLRAIDPVTGKIAWEHKEKLPLWAGTMTTAGGLLFTGTSDGYVKAFDSKTGKELWKFQTGSGVVSVPVTWEQDGEQYVGIQSGYGGAVPLWGGDMAEMTKKVTQGGSMWVFKLPK
>CP029606.1|QAZ39997.1|2413093_2413708_-|hypothetical-protein
MTSSSLRSLHAVVVLVTLTATLAGVRPAQATEDDGNAAVPDYINGCGIWPHTRCPGVDLRGADLSARNLAGADLRGANLAGADLRVANLAGANLDGANLAGAKLGKINAPTATFRGANLAGADLEFARVMRCDFSDADLTGANLEMVRAAFSWFVRAKIVDANLQEGKFSTVNFTGATMKGNVLRFAIFPDSTFDQCTGCPTDW
>CP029606.1|QAZ39996.1|2412580_2413090_-|cytochrome-C
MHSPITSIPRGVAAALRTTALTAALVGATGVAAQQVSTEPITTPVTIDLSALPALGAPWREDNPYRGDAQVAEIGRALFNQACARCHGDDGNATHHVGTDLRRLDGYCFAKVKDLAARRHCLRDNDHYFKESVLRGKIRVGVTHMPPWDGVLTQEAVWSLRTFLESRRP
>CP029606.1|QAZ39995.1|2410742_2412485_+|PQQ-dependent-dehydrogenase,-methanol/ethanol-family
MRLHLLSLLVAAACASVGAQAAGVTDAMIDNDAKTPNDVLSWGIGSQGQRYSPLKQVNTSTVQKLVPAWAFSFGGEKQRGQQSQPLIHDGKMFVTASYSRIYALDVKTGTKLWKYEHRLPEGIMPCCDVINRGAALYDNLVIFGTLDAQLVALDQKTGDVVWKEKIDDYAAGYSYTAAPLIAGGLLLTGVSGGEFGIVGRVEARDPKTGKMVWVRPTVEGHMGYKFDKDGNKTEIGISGTTGKTWPGDMWKSGGAATWLGGTYDAKTGLAYFGTGNPGPWNSHLRPGDNLFSCATVAIDVKTGQIKWHYQTTPHDGWDFDGVNEFVTFDMDGKRVGGKADRNGFFYVIDAANGKLENAFPFVKKITWATGIDLKTGRPNYVPENRPGDPTAGADGKKGNSVFAAPSFLGGKNQMPMAYSPDTKLFYVPSNEWGMEIWNEPVTYKKGAAYLGAGFTIKTINDEYIGAMRAIDPKTGKTVWEVKNNAPLWGGVLTTAGNLVFWGTPEGFLKAADAKTGKVVWEFQTGSGVVAPPVTWQQDGEQYVSVVSGWGGAVPLWGGDVAKKVNFLEQGGTVWVFKLPK
>CP029606.1|QAZ39994.1|2409669_2410566_+|quinoprotein-relay-system-zinc-metallohydrolase-1
MGAVAQADPTTLDYRLSARALAPDVYVVEGANADFSRANGCNIINTGFIVVDDGVIVINTGPSKRYGEQLRALVGRTTGKPVKQVLHLNLHPDYFLGNQAFADVPRLATAATIEGMRAEAKSYEDNLYRLCGDWMKATEALLPDRTVAPGPLLAGNPRFELRELKGHTASDLVLVDRISGVVFAGGLVFVDRVPTTPHARLPDWLASLDALAAQPFKTLVPSHGPVVGDARGIEQTRRYLRWLDGSFGAAAQRGSEMTEVLAQPVPAEFRNWAAFATEYPRNVVHLYPAYELKSLQAR
>CP029606.1|QAZ40005.1|2422229_2423204_-|phosphatidate-cytidylyltransferase
MSGLRQLSASQQVGLLFLLVFGALLLISAAALLRSLREHGEESRDRHERFKRELRALWIGASVFWLAWVSGAAGATLLFGVLSFLALREYITLMHTRRSDHRSLILAFFIVLPLQYLLVANRNFDLFSVFIPVYIFLAIPVVSALAGDPERFLERNAKIQWGIMVCVYGMSHTPALLLLQFPNREDRGAFLVFFLVLVVAVAHIAQEAASRRLRRRPVARHISRSFSYRAWLIGALVAAIVGGLLYWITPFKPGQAMVMALIASACGTMGEFVMKALKRDAGVHYWGNRASVTGAVGLLDRVAPLCFAAPVFFHSVRWYFNLSF
>CP029606.1|QAZ40006.1|2423200_2423827_-|1-acyl-sn-glycerol-3-phosphate-acyltransferase
MSAAADSVGLLLSFLARLITGAQGHWYGCPPKAEQRIYFANHQSHLDWVLIWAALPRDLRARTRPIAAKDYWTASPLRHWITREVFNAVYVARQRTDDQDPLEPLVEALRSGDSLVIFPEGTRSNRGDPQAFKSGLYHLAEQFPMVQLIPAWIDNVQRVMPKGEVVPVPILCSVTFGAPLAPLTPGESKRDFLDRARAAVVVLKDVAA
>CP029606.1|QAZ40007.1|2423878_2425474_-|bifunctional-phosphoribosylaminoimidazolecarboxamide-formyltransferase/inosine-monophosphate-cyclohydrolase
MATALLSVSDKTGIVELARSLHALGVKLLSTGGTARLLADSGLPVTEVADHTGFPEMLDGRVKTLHPTIHGGLLARRDLPAHMASLATHGIETIDLLVVNLYPFEATVAKPGCTLEDAIENIDIGGPAMVRSAAKNWKDVAVLTDASQYAGVLAELQQDGHVSESTRFALAVAAFNRISNYDAAISDHLSALRPDGTRAEFPAQSNGRFVKLQDLRYGENPHQSAAFYRDLHPAPGSLVSAVQLQGKELSYNNIADADAAWECVKGFDASVDGPACVIVKHANPCGVALGANAAEAYGKAFRTDPTSAFGGIIAFNVPVDGAAAQAIAKQFVEVLIAPGYTAEARAVFAAKANTRVLQISLDGVQRDAPDAWSRGLNSHDIKRVGSGLLIQSADNHVLGLQDLKVVTKLAPTDGQLTDLLFAWKVAKFVKSNAIVFCGDGMTLGVGAGQMSRLDSARIASIKASHADLSLAGSAVASDAFFPFRDGLDVLADAGARSVIQPGGSLRDDEVIAAADERGIAMVLTGVRHFRH
>CP029606.1|QAZ40008.1|2425521_2425761_-|Fis-family-transcriptional-regulator
MTKKHIDACIREGLDAYFKDLRGADPRNIYDMVLQVVEKPLLDVVMQHAEGNQSRAAEWLGINRNTLRRKLLEHKLIKP
>CP029606.1|QAZ41472.1|2425757_2426798_-|tRNA-dihydrouridine-synthase-DusB
MRIGSIELPNRLFVAPMAGVTDRPFRQLCKRLGAGYAVSEMVTSRKDLWHSLKTSRRANHDGEVAPIAVQIAGTEPLMMAEAAAYNIDRGAQVIDINMGCPAKKVCNVWAGSALMRDESLALRIVEAVVTACAPHGVPVTLKMRTGWSAQNRNAVALARGAESLGIAMLTVHGRTREQGYAGSAEHDTVRAVKAAVRVPVVANGDIDSPEKARDVLAATGADAVMVGRAAQGRPWIFREIAHFLATGERLPPPRTAQAKAWLIEHLHDHYGLYGEYAGVRTARKHIGWAVHALPGGALFRARMNTLERCEAQVAAVGDFFDALGVEHELLPQAAAALDPSFEQEAA
>CP029606.1|QAZ40009.1|2426914_2427397_+|hypothetical-protein
MESWLESMLAVLALPKFGLSTVFVVAFISATLLPFGSEPAVFGLVKLDPQLFWPAVLVATAGNTLGGAVTWWMGYGAERAYERVKHRPADARVLKWLERFGPPACLLSWLPVVGDPLCAVAGWLRLPFWPCLLYMAIGKFARYLTMTALLLWVLPGQFHP
>CP029606.1|QAZ40010.1|2427434_2428628_-|patatin
MMPRIGLALAGGGPLGAIYEIGALCALEESITGLRFTQCQGYVGVSAGGFVAAGLANGIGPRELCSSFIENEGPPDDVFDPALLMRPAWGEFAKRLARAPGLAGGAALDYALGFATRSQVLDQLGRAMPTGLFSNRTVHQHLSRAFGAPGRSNDFRTLARRLVLVAVDLDSGEARPFGLPGHDHVPISLAVQASAALPGLFPPVEIDGRCYVDGVLRKTLHASVLLDEGLDLLICLNPLVPYDSPADAHRPADGARAPLARLVDGGLPQVLSQTFRTLIRSRMELGLRQYDQLHPDTDILLFEPDARDAKVFFTNPFSYSQRRRMAEHAYQATRAQLRARRAALGPRLARHGLGWSAALDDPRRTLLDTRPAPVGRANQALRRLETTLDTLDAALAA
>CP029606.1|QAZ40011.1|2428624_2429119_-|hypothetical-protein
MRSPLALGLAALLGGAPVGPATGATAPSPGSDEAAVFAAAGLQHRGGDHYREACATALKPQTERLDINRDGRDEVLLFLASSPCFGPARGGNVALFMQDAGGAWVDLLGFLPGVEVRPTGGEHLGYADLGVANPGGCMAVYHWNGSAYVHAANRAIEPGGCQFR
>CP029606.1|QAZ40012.1|2429154_2429703_-|poly-granule-associated-protein
MVKKLQKLADKQSAAAGTPSMAQLFDSQLASSVKDSAQQIWQAGLGAFAKAQGEGGKVFESLVKEGVSIQRRTQAAAEEKLGEVSNRMTKLSDDVQARAGQQWDKLESIFEERVAKALGKLGVPSSKDIDALIHRIDTLSANVARLSKAPAARKAAPAKTAAKAAAPRKAAAKRAAPRKRAA
>CP029606.1|QAZ40013.1|2429931_2431938_+|short-chain-dehydrogenase
MQYFVTGATGFIGKRLVRKLLDRRGSTVHFLLRPESEGKLPELLAYWGLSGAAKARAVPVYGDLTAKKLGVAADVIKALKGRIDTVYHLAAVYDLGADEAAQVQVNIEGTRSAVEFAQAIQAGHFHHVSSIAAAGLYEGVFREDMFDEAEGLDHPYFMTKHESEKIVRKECRLPWTVFRPAMVVGDSGTGEMDKIDGPYYFFKLIQRMRQLLPPWMPAVGLEGGRVNIVPVDFVVAALDHISHAKLELDRQCFHLVDPVGYRVGDVLDIFSKAAHAPKMNLFVNAALLGFIPKSVKKGLMALAPVRRVRNAVMKDLGLPEDMLTFVNYPTRFDCRDAQAALKGSGIECPNLKDYAWRLWDYWERHLDPDLFIDRSLRGTVGGKVVLVTGGSSGIGLAAACKFAEAGAVTVICARDADKLDEAVKEIKAFAGKDAKVFSYSVDIADEAGCRAFLEALQAEHGGVDFLINNAGRSIRRAIENSYERFHDFERTMQLNYFGCLRVTMGVLPGMVAKKKGHIVNISSIGVLTNAPRFSAYVASKAALDAWTRCASSEYADTGISFTTINMPLVRTPMIAPTKIYNNVPTLAPEEAADMIAQACVYKPVRIATRLGTAGQVLHALAPRVAQIVMNTSFRMFPDSEAAKGEKGAKPQLSAEAVALQQMMRGIHF

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

605794 : 613597

Pseudomonas_phage(33.33%)

tail,head,terminase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ38439.1\|605794_607414_-\|head,tail	phage head-tail adapter protein	A0A221SAN2	Ralstonia_phage	1.4e-118	44.9
QAZ38440.1\|607413_607596_-	hypothetical protein	NA	NA	NA	NA
QAZ38441.1\|607656_609060_-	TerL	A0A0F7L764	uncultured_marine_virus	4.6e-118	47.0
QAZ38442.1\|609056_609509_-\|terminase	terminase small subunit protein	A0A2K8HN72	Pseudomonas_phage	4.9e-13	32.5
QAZ38443.1\|609508_609772_-	hypothetical protein	NA	NA	NA	NA
QAZ38444.1\|609768_609999_-	hypothetical protein	NA	NA	NA	NA
QAZ38445.1\|609995_610445_-	RusA family crossover junction endodeoxyribonuclease	J7I4J7	Pseudomonas_phage	4.4e-46	63.0
QAZ38446.1\|610614_610824_-	hypothetical protein	NA	NA	NA	NA
QAZ38447.1\|611118_612603_-	hypothetical protein	A0A1B0VG30	Salmonella_phage	1.6e-20	43.0
QAZ38448.1\|612800_613121_-	hypothetical protein	NA	NA	NA	NA
QAZ38449.1\|613348_613597_-	Cro/Cl family transcriptional regulator	A0A0R6PJ81	Moraxella_phage	1.4e-06	38.7

DBSCAN-SWA_2

1510750 : 1518297

Acinetobacter_phage(42.86%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ39224.1\|1510750_1511329_-	transcription termination/antitermination protein NusG	G3MAW2	Bacillus_virus	1.4e-12	30.3
QAZ39225.1\|1511346_1511730_-	preprotein translocase subunit SecE	NA	NA	NA	NA
QAZ39226.1\|1511956_1513147_-	elongation factor Tu	A0A1V0SLW6	Klosneuvirus	6.9e-14	28.5
QAZ39227.1\|1513690_1514413_-	uracil-DNA glycosylase	A0A1L5JKJ8	Bubaline_alphaherpesvirus	4.0e-41	47.2
QAZ39228.1\|1514418_1515222_-	indole-3-glycerol phosphate synthase TrpC	A0A0P0IR83	Acinetobacter_phage	2.7e-62	53.2
QAZ39229.1\|1515218_1516253_-	anthranilate phosphoribosyltransferase	A0A0N7IRD9	Acinetobacter_phage	3.0e-74	45.1
QAZ39230.1\|1516249_1516819_-	anthranilate/aminodeoxychorismate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	2.0e-64	62.3
QAZ39231.1\|1516821_1518297_-	anthranilate synthase component I	S4VNU7	Pandoravirus	1.8e-43	31.3

DBSCAN-SWA_3

2547799 : 2559550

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QAZ40127.1\|2547799_2548597_-	ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	1.2e-06	24.5
QAZ41482.1\|2548606_2549407_-	kpsM protein	NA	NA	NA	NA
QAZ40128.1\|2549415_2549778_-	MarR family EPS-associated transcriptional regulator	NA	NA	NA	NA
QAZ41483.1\|2549860_2550985_-	GDP-mannose 4,6-dehydratase	M1IBC3	Acanthocystis_turfacea_Chlorella_virus	6.3e-134	67.5
QAZ40129.1\|2551008_2551938_-	GDP-fucose synthetase	M1I5W5	Acanthocystis_turfacea_Chlorella_virus	5.8e-93	54.8
QAZ40130.1\|2551964_2552516_-	dTDP-4-dehydrorhamnose 3,5-epimerase	A0A291LA62	Escherichia_phage	1.3e-39	45.8
QAZ41484.1\|2552515_2553397_-	glucose-1-phosphate thymidylyltransferase	A0A1D7XFC1	Escherichia_phage	3.0e-91	57.5
QAZ40131.1\|2553424_2554321_-	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	2.2e-17	32.3
QAZ40132.1\|2554317_2555391_-	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	3.0e-85	49.1
QAZ40133.1\|2555387_2556857_-	mannose-1-phosphate guanylyltransferase/mannose-6-phosphate isomerase	A0A1V0SH58	Hokovirus	1.5e-42	26.9
QAZ40134.1\|2556943_2558038_+	glycosyl transferase	NA	NA	NA	NA
QAZ41486.1\|2558152_2559550_+	ATP-dependent RNA helicase	Q5GF26	Diachasmimorpha_longicaudata_entomopoxvirus	7.7e-49	31.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP029606

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection