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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP029562 Mesorhizobium sp. Pch-S chromosome, complete genome 5 crisprs csa3,cas3,DEDDh,WYL 0 1 3 0

Results visualization

1. CP029562
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029562_3 1497623-1497733 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029562_4 1518730-1518833 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029562_5 1614320-1614403 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029562_6 4421204-4421289 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP029562_7 4809401-4809547 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP032685 Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence 1099488-1099523 6 0.833
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP032690 Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence 1100487-1100522 6 0.833
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NC_020062 Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence 453637-453672 6 0.833
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050105 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence 553192-553227 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP020951 Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence 536453-536488 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP025508 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence 462459-462494 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050110 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence 553194-553229 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP022667 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence 175110-175145 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050087 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence 461243-461278 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050081 Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence 298590-298625 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050106 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence 183749-183784 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP049731 Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence 295127-295162 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP025506 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence 175599-175634 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP025506 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence 280777-280812 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050111 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence 183933-183968 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP030763 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence 646931-646966 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP030763 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence 737805-737840 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP030764 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence 402560-402595 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP030764 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence 225298-225333 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP022668 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence 63705-63740 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP022668 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence 168884-168919 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP053206 Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence 295459-295494 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050088 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence 308146-308181 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050088 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence 426416-426451 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP032685 Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence 103635-103670 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP032685 Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence 1454480-1454515 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP032690 Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence 103635-103670 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP032690 Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence 1454458-1454493 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP023000 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence 53381-53416 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP054029 Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence 323392-323427 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP021820 Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence 1587260-1587295 7 0.806
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP016289 Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence 128327-128362 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050106 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence 425508-425543 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP025506 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence 417863-417898 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050111 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence 425692-425727 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP030763 Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence 89473-89508 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP022668 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence 305970-306005 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP032685 Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence 654304-654339 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP032690 Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence 653853-653888 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP024314 Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence 1025530-1025565 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP023000 Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence 1457003-1457038 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP025013 Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence 211090-211125 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP025017 Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence 15307-15342 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NC_007765 Rhizobium etli CFN 42 plasmid p42e, complete sequence 152480-152515 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP021028 Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence 167268-167303 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP020909 Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence 152285-152320 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NC_021908 Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence 152276-152311 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP013516 Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence 156470-156505 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NC_012848 Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence 613268-613303 8 0.778
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050105 Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence 344230-344265 9 0.75
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP025508 Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence 249321-249356 9 0.75
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050110 Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence 344232-344267 9 0.75
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP022667 Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence 388322-388357 9 0.75
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP050087 Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence 249332-249367 9 0.75
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP032685 Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence 1451867-1451902 9 0.75
CP029562_6 6.1|4421229|36|CP029562|CRISPRCasFinder 4421229-4421264 36 NZ_CP032690 Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence 1451845-1451880 9 0.75

1. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 6, identity: 0.833

agcggtttttcgtccggaattgcgtgaggcaacagg--	CRISPR spacer
agcggttttccgtccggaattgc--gagacaacaaaga	Protospacer
*********.*************  ***.*****..  

2. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 6, identity: 0.833

agcggtttttcgtccggaattgcgtgaggcaacagg--	CRISPR spacer
agcggttttccgtccggaattgc--gagacaacaaaga	Protospacer
*********.*************  ***.*****..  

3. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NC_020062 (Rhizobium tropici CIAT 899 plasmid pRtrCIAT899c, complete sequence) position: , mismatch: 6, identity: 0.833

agcggtttttcgtccggaattgcgtgaggcaacagg--	CRISPR spacer
agcggttttacgtccggaattgc--gagacaacaaaga	Protospacer
********* *************  ***.*****..  

4. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

5. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP020951 (Rhizobium sp. CIAT894 plasmid pRheCIAT894d, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaaaaacga	Protospacer
********* *****************.. **  *.

6. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

7. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

8. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

9. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

10. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050081 (Rhizobium leguminosarum bv. trifolii strain 31B plasmid pRL31b5, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

11. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

12. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP049731 (Rhizobium leguminosarum strain A1 plasmid pRL12, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

13. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

14. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgagaaaacaaagg	Protospacer
********* ************** **..  * ***

15. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

16. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

17. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgagaaaacaaagg	Protospacer
********* ************** **..  * ***

18. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

19. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP030764 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed4, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtggagacaaaga	Protospacer
********* ****************..*  * **.

20. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

21. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgagaaaacaaagg	Protospacer
********* ************** **..  * ***

22. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP053206 (Rhizobium leguminosarum bv. trifolii TA1 plasmid pRltTA1D, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

23. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtgaaaacaaaga	Protospacer
********* *****************..  * **.

24. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050088 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b6, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgagaaaacaaagg	Protospacer
********* ************** **..  * ***

25. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttccgtccggaattgcgagagtgcaaaga	Protospacer
*********.************** ***   * **.

26. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttccgtccggaattgcgagaagacaaaga	Protospacer
*********.************** **.*  * **.

27. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttccgtccggaattgcgagagtgcaaaga	Protospacer
*********.************** ***   * **.

28. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttccgtccggaattgcgagaagacaaaga	Protospacer
*********.************** **.*  * **.

29. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttccgtccggaattgcgagagaataaaag	Protospacer
*********.************** ***.  * *.*

30. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP054029 (Rhizobium sp. JKLM19E plasmid pPR19E02, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtg-aggcaacagg	CRISPR spacer
agcggttttgcgtccgcaattgcgtgaaaacaacga-	Protospacer
********* ****** ********* *..****.. 

31. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP021820 (Sinorhizobium meliloti strain M162 plasmid psymB, complete sequence) position: , mismatch: 7, identity: 0.806

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttccgtccggaattgcgggaaaacaaagg	Protospacer
*********.************** **..  * ***

32. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP016289 (Rhizobium leguminosarum strain Vaf10 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcatgaaaacaaaga	Protospacer
********* *************.***..  * **.

33. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050106 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b5, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcatgaaaacaaaga	Protospacer
********* *************.***..  * **.

34. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP025506 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvE, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcatgaaaacaaaga	Protospacer
********* *************.***..  * **.

35. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050111 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b1, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcatgaaaacaaaga	Protospacer
********* *************.***..  * **.

36. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP030763 (Rhizobium leguminosarum strain ATCC 14479 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcatgaaaacaaaga	Protospacer
********* *************.***..  * **.

37. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP022668 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR3, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcatgaaaacaaaga	Protospacer
********* *************.***..  * **.

38. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttccgtccggaattgcgagaaaacaaaga	Protospacer
*********.************** **..  * **.

39. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttccgtccggaattgcgagaaaacaaaga	Protospacer
*********.************** **..  * **.

40. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP024314 (Rhizobium sp. NXC24 plasmid pRspNXC24c, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
ggcggttttccgtccggaattgcgtgaaaacaaaga	Protospacer
.********.*****************..  * **.

41. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP023000 (Rhizobium sp. 11515TR strain 10195 plasmid p11515TR-B, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggtttttcgtctggaattacgtgaaaacaaaga	Protospacer
**************.******.*****..  * **.

42. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP025013 (Rhizobium leguminosarum strain Norway plasmid pRLN1, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccgaaattgcgtgaaaacaaaga	Protospacer
********* ******.**********..  * **.

43. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP025017 (Rhizobium leguminosarum strain Norway plasmid pRLN5, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcatgaaaacaaaga	Protospacer
********* *************.***..  * **.

44. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NC_007765 (Rhizobium etli CFN 42 plasmid p42e, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgttcggaattgcgtgaaaacataga	Protospacer
********* ***.*************..  *.**.

45. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP021028 (Rhizobium sp. TAL182 plasmid pRetTAL182d, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgttcggaattgcgtgaaaacataga	Protospacer
********* ***.*************..  *.**.

46. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP020909 (Rhizobium etli strain NXC12 plasmid pRetNXC12c, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgttcggaattgcgtgaaaatataga	Protospacer
********* ***.*************..  *.**.

47. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NC_021908 (Rhizobium etli bv. mimosae str. Mim1 plasmid pRetMIM1d, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgttcggaattgcgtgaaaacataga	Protospacer
********* ***.*************..  *.**.

48. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP013516 (Rhizobium sp. N1314 plasmid pRspN1314e, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgttcggaattgcgtgaaaacataga	Protospacer
********* ***.*************..  *.**.

49. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NC_012848 (Rhizobium leguminosarum bv. trifolii WSM1325 plasmid pR132501, complete sequence) position: , mismatch: 8, identity: 0.778

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggtattgcgtgaaaacaaaga	Protospacer
********* ******* *********..  * **.

50. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050105 (Rhizobium leguminosarum bv. trifolii strain 4B plasmid pRL4b6, complete sequence) position: , mismatch: 9, identity: 0.75

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtggaaacaagag	Protospacer
********* ****************...  * ..*

51. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP025508 (Rhizobium leguminosarum bv. viciae strain UPM791 plasmid pRlvB, complete sequence) position: , mismatch: 9, identity: 0.75

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtggaaacaagag	Protospacer
********* ****************...  * ..*

52. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050110 (Rhizobium leguminosarum bv. trifolii strain 3B plasmid pRL3b4, complete sequence) position: , mismatch: 9, identity: 0.75

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtggaaacaagag	Protospacer
********* ****************...  * ..*

53. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP022667 (Rhizobium leguminosarum bv. viciae strain BIHB 1217 plasmid pPR2, complete sequence) position: , mismatch: 9, identity: 0.75

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtggaaacaagag	Protospacer
********* ****************...  * ..*

54. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP050087 (Rhizobium leguminosarum bv. trifolii strain 23B plasmid pRL23b5, complete sequence) position: , mismatch: 9, identity: 0.75

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttgcgtccggaattgcgtggaaacaagag	Protospacer
********* ****************...  * ..*

55. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP032685 (Rhizobium sp. CCGE531 plasmid pRCCGE531d, complete sequence) position: , mismatch: 9, identity: 0.75

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttccgtccggaattacgtggaaacaaaga	Protospacer
*********.***********.****...  * **.

56. spacer 6.1|4421229|36|CP029562|CRISPRCasFinder matches to NZ_CP032690 (Rhizobium sp. CCGE532 plasmid pRCCGE532d, complete sequence) position: , mismatch: 9, identity: 0.75

agcggtttttcgtccggaattgcgtgaggcaacagg	CRISPR spacer
agcggttttccgtccggaattacgtggaaacaaaga	Protospacer
*********.***********.****...  * **.

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 5616153 : 5632245 19 Sinorhizobium_phage(18.18%) coat,terminase,head NA
DBSCAN-SWA_2 5809416 : 5858276 58 Sinorhizobium_phage(25.0%) capsid,integrase,terminase,holin,head,tail,tRNA attL 5819578:5819617|attR 5849065:5849104
DBSCAN-SWA_3 6192542 : 6205593 13 uncultured_Mediterranean_phage(90.0%) tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage