CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035531	Klebsiella pneumoniae strain NFYY0065 chromosome, complete genome	3 crisprs	DEDDh,WYL,DinG,cas3,csa3,RT	0	0	6	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP035531_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035531_1

103061-103146

Orphan

Consensus_repeat	Method
AATAAAAACCATAAAAACCACAGT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035531_1

>merge|CP035531|1|103061-103146|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGTCATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCGAATAAAAACCATAAAAACCATAGT

>CP035531|1|1|103061-103146|CRISPRCasFinder
AATAAAAACCATAAAAACCACAGT	CATAAATCAGAGATATATCACTCCCGGGCAGTTCAGCG
AATAAAAACCATAAAAACCATAGT

Protein	Signature genes	Signature genes Name	Protein_function
CP035531.1\|QBA24039.1\|97153_99502_-\|LPS-assembly-protein-LptD	unknown	unknown	gnl\|CDD\|235158
CP035531.1\|QBA24041.1\|100605_101304_-\|response-regulator	unknown	unknown	gnl\|CDD\|226931
CP035531.1\|QBA24052.1\|116093_116939_+\|arabinose-operon-transcriptional-regulator-AraC	unknown	unknown	gnl\|CDD\|236717
CP035531.1\|QBA24049.1\|111700_112396_-\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP035531.1\|QBA24033.1\|92610_92814_+\|hypothetical-protein	unknown	unknown	unknown
CP035531.1\|QBA24034.1\|92766_93615_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	unknown	unknown	gnl\|CDD\|273208
CP035531.1\|QBA24047.1\|106073_108980_-\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP035531.1\|QBA24045.1\|104787_105327_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	unknown	unknown	gnl\|CDD\|163145
CP035531.1\|QBA24037.1\|94817_95807_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	unknown	unknown	gnl\|CDD\|234696
CP035531.1\|QBA24035.1\|93619_93997_-\|Co2+/Mg2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP035531.1\|QBA24036.1\|93999_94821_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	unknown	unknown	gnl\|CDD\|234708
CP035531.1\|QBA24051.1\|114046_115756_-\|ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP035531.1\|QBA24042.1\|101293_102919_-\|sensor-histidine-kinase	unknown	unknown	gnl\|CDD\|225827
CP035531.1\|QBA24038.1\|95812_97099_-\|peptidylprolyl-isomerase-SurA	unknown	unknown	gnl\|CDD\|236758
CP035531.1\|QBA24046.1\|105401_106061_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	unknown	unknown	gnl\|CDD\|236659
CP035531.1\|QBA24050.1\|112533_114036_-\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP035531.1\|QBA24040.1\|99745_100573_+\|co-chaperone-DjlA	unknown	unknown	gnl\|CDD\|236512
CP035531.1\|QBA24048.1\|109167_111525_-\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP035531.1\|QBA24043.1\|103243_104608_+\|2-hydroxycarboxylate-transporter-family-protein	unknown	unknown	gnl\|CDD\|377030
CP035531.1\|QBA24044.1\|104636_104825_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP035531.1\|QBA24039.1\|97153_99502_-\|LPS-assembly-protein-LptD	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP035531.1\|QBA24041.1\|100605_101304_-\|response-regulator	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66
CP035531.1\|QBA24052.1\|116093_116939_+\|arabinose-operon-transcriptional-regulator-AraC	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP035531.1\|QBA24049.1\|111700_112396_-\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP035531.1\|QBA24034.1\|92766_93615_-\|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP035531.1\|QBA24047.1\|106073_108980_-\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP035531.1\|QBA24037.1\|94817_95807_-\|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP035531.1\|QBA24035.1\|93619_93997_-\|Co2+/Mg2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP035531.1\|QBA24036.1\|93999_94821_-\|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
CP035531.1\|QBA24051.1\|114046_115756_-\|ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP035531.1\|QBA24042.1\|101293_102919_-\|sensor-histidine-kinase	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	2.22281e-172
CP035531.1\|QBA24038.1\|95812_97099_-\|peptidylprolyl-isomerase-SurA	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP035531.1\|QBA24046.1\|105401_106061_-\|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	7.5539e-160
CP035531.1\|QBA24050.1\|112533_114036_-\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP035531.1\|QBA24040.1\|99745_100573_+\|co-chaperone-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
CP035531.1\|QBA24048.1\|109167_111525_-\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP035531.1\|QBA24043.1\|103243_104608_+\|2-hydroxycarboxylate-transporter-family-protein	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP035531.1\|QBA24045.1\|104787_105327_+\|citrate-lyase-holo-[acyl-carrier-protein]-synthase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86

>CP035531.1|QBA24042.1|101293_102919_-|sensor-histidine-kinase
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLELSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEVHDAS
>CP035531.1|QBA24041.1|100605_101304_-|response-regulator
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP035531.1|QBA24040.1|99745_100573_+|co-chaperone-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP035531.1|QBA24039.1|97153_99502_-|LPS-assembly-protein-LptD
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP035531.1|QBA24038.1|95812_97099_-|peptidylprolyl-isomerase-SurA
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP035531.1|QBA24037.1|94817_95807_-|4-hydroxythreonine-4-phosphate-dehydrogenase-PdxA
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDLDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP035531.1|QBA24036.1|93999_94821_-|16S-rRNA-(adenine(1518)-N(6)/adenine(1519)-N(6))--dimethyltransferase-RsmA
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP035531.1|QBA24035.1|93619_93997_-|Co2+/Mg2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP035531.1|QBA24034.1|92766_93615_-|bis(5'-nucleosyl)-tetraphosphatase-(symmetrical)
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKSLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP035531.1|QBA24033.1|92610_92814_+|hypothetical-protein
MFPIAGFVFFLKRSPERQIAHKRRSGKALATTRQNDAAGSPDKAQRAAIREESGRDGFAFVEAFLPV
>CP035531.1|QBA24043.1|103243_104608_+|2-hydroxycarboxylate-transporter-family-protein
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP035531.1|QBA24044.1|104636_104825_-|hypothetical-protein
MLTPAWAGVSTDINSSPTYDKYDSAWTVMMMVAIADRALIVTLNAEHLGYRTQIFSAFRSGK
>CP035531.1|QBA24045.1|104787_105327_+|citrate-lyase-holo-[acyl-carrier-protein]-synthase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP035531.1|QBA24046.1|105401_106061_-|bifunctional-tRNA-pseudouridine(32)-synthase/23S-rRNA-pseudouridine(746)-synthase-RluA
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVALVWGHPQPAEGLVDLPLICDWPNRPMQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP035531.1|QBA24047.1|106073_108980_-|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESTDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAAIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP035531.1|QBA24048.1|109167_111525_-|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLSDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIERRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLVEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSDVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP035531.1|QBA24049.1|111700_112396_-|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQRIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP035531.1|QBA24050.1|112533_114036_-|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATAEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP035531.1|QBA24051.1|114046_115756_-|ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKENVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYEDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSQAALTH
>CP035531.1|QBA24052.1|116093_116939_+|arabinose-operon-transcriptional-regulator-AraC
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVRDACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE

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Crispr_ID: CP035531_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035531_2

630665-630783

Orphan

Consensus_repeat	Method
GCATCGCCCGGTGGCGCTGCGCTTACCGGGCCT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035531_2

>merge|CP035531|2|630665-630783|CRISPRCasFinder
GCATCGCCCGGTGGCGCTGCGCTTACCGGGCCTACGGGGTGTGAGCCTGTGAGTGCCCCGGCAATAAAGCGGCTCTGTGCCTGATAGCATCGCCCGGTGGCGCTGCGTTTACCGGGCCT

>CP035531|2|2|630665-630783|CRISPRCasFinder
GCATCGCCCGGTGGCGCTGCGCTTACCGGGCCT	ACGGGGTGTGAGCCTGTGAGTGCCCCGGCAATAAAGCGGCTCTGTGCCTGATA
GCATCGCCCGGTGGCGCTGCGTTTACCGGGCCT

Protein	Signature genes	Signature genes Name	Protein_function
CP035531.1\|QBA24518.1\|637950_639066_+\|class-II-histone-deacetylase	unknown	unknown	gnl\|CDD\|212521
CP035531.1\|QBA24506.1\|624166_625285_-\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|238559
CP035531.1\|QBA24502.1\|620756_621101_+\|DUF3302-domain-containing-protein	unknown	unknown	gnl\|CDD\|314583
CP035531.1\|QBA24521.1\|641548_641914_-\|cupin-domain-containing-protein	unknown	unknown	gnl\|CDD\|225981
CP035531.1\|QBA24511.1\|629179_630133_+\|aldo/keto-reductase	unknown	unknown	gnl\|CDD\|381307
CP035531.1\|QBA24504.1\|622283_623081_-\|ABC-transporter-ATP-binding-protein	unknown	unknown	gnl\|CDD\|224045
CP035531.1\|QBA24519.1\|639072_639666_-\|DUF3156-family-protein	unknown	unknown	gnl\|CDD\|371486
CP035531.1\|QBA24503.1\|621100_622243_+\|HlyD-family-secretion-protein	unknown	unknown	gnl\|CDD\|224482
CP035531.1\|QBA24520.1\|639643_641143_-\|APC-family-permease	unknown	unknown	gnl\|CDD\|223605
CP035531.1\|QBA24514.1\|632569_634303_-\|arylsulfatase	unknown	unknown	gnl\|CDD\|293749
CP035531.1\|QBA24513.1\|631705_632482_-\|SDR-family-oxidoreductase	unknown	unknown	gnl\|CDD\|212491
CP035531.1\|QBA24510.1\|628274_629051_+\|ABC-transporter-substrate-binding-protein	unknown	unknown	gnl\|CDD\|270421
CP035531.1\|QBA24512.1\|630888_631680_-\|molybdenum-cofactor-biosynthesis-protein-F	unknown	unknown	gnl\|CDD\|375179
CP035531.1\|QBA24507.1\|625556_625946_+\|hypothetical-protein	unknown	unknown	unknown
CP035531.1\|QBA24509.1\|627076_628255_+\|amidohydrolase	unknown	unknown	gnl\|CDD\|349916
CP035531.1\|QBA24515.1\|634347_635535_-\|anaerobic-sulfatase-maturase	unknown	unknown	gnl\|CDD\|188457
CP035531.1\|QBA24516.1\|635960_636644_+\|LuxR-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|197715
CP035531.1\|QBA24505.1\|623077_624160_-\|iron-ABC-transporter-permease	unknown	unknown	gnl\|CDD\|223682
CP035531.1\|QBA24517.1\|636761_637934_+\|MFS-transporter	unknown	unknown	gnl\|CDD\|340883
CP035531.1\|QBA24508.1\|626114_626570_+\|hypothetical-protein	unknown	unknown	gnl\|CDD\|378715

Protein	Function_ID	Function_description	E-value
CP035531.1\|QBA24518.1\|637950_639066_+\|class-II-histone-deacetylase	gnl\|CDD\|212521	cd09996, HDAC_classII_1, Histone deacetylases and histone-like deacetylases, classII. This subfamily includes bacterial as well as eukaryotic Class II histone deacetylase (HDAC) and related proteins. Deacetylases of class II are Zn-dependent enzymes that catalyze hydrolysis of N(6)-acetyl-lysine residues of histones (EC 3.5.1.98) and possibly other proteins to yield deacetylated histones/other proteins. Included in this family is a bacterial HDAC-like amidohydrolase (Bordetella/Alcaligenes species FB18817, denoted as FB188 HDAH) shown to be most similar in sequence and function to class II HDAC6 domain 3 or b (HDAC6b). FB188 HDAH is able to remove the acetyl moiety from acetylated histones, and can be inhibited by common HDAC inhibitors such as SAHA (suberoylanilide hydroxamic acid) as well as class II-specific but not class I specific inhibitors.	0
CP035531.1\|QBA24506.1\|624166_625285_-\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|238559	cd01139, TroA_f, Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.	7.36361e-98
CP035531.1\|QBA24502.1\|620756_621101_+\|DUF3302-domain-containing-protein	gnl\|CDD\|314583	pfam11742, DUF3302, Protein of unknown function (DUF3302). This family of unknown function is expressed by proteobacteria.	5.45497e-38
CP035531.1\|QBA24511.1\|629179_630133_+\|aldo/keto-reductase	gnl\|CDD\|381307	cd19081, AKR_AKR9C1, AKR9C family of aldo-keto reductase (AKR). Haloferax volcanii aldo-keto reductase is a founding member of aldo-keto reductase family 9 member C1 (AKR9C1).	3.52139e-161
CP035531.1\|QBA24504.1\|622283_623081_-\|ABC-transporter-ATP-binding-protein	gnl\|CDD\|224045	COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism].	8.45426e-85
CP035531.1\|QBA24519.1\|639072_639666_-\|DUF3156-family-protein	gnl\|CDD\|371486	pfam11354, DUF3156, Protein of unknown function (DUF3156). This family of proteins with unknown function appears to be restricted to Proteobacteria.	8.93611e-78
CP035531.1\|QBA24503.1\|621100_622243_+\|HlyD-family-secretion-protein	gnl\|CDD\|224482	COG1566, EmrA, Multidrug resistance efflux pump [Defense mechanisms].	1.78692e-65
CP035531.1\|QBA24521.1\|641548_641914_-\|cupin-domain-containing-protein	gnl\|CDD\|225981	COG3450, COG3450, Predicted enzyme of the cupin superfamily [General function prediction only].	6.653e-32
CP035531.1\|QBA24514.1\|632569_634303_-\|arylsulfatase	gnl\|CDD\|293749	cd16025, PAS_like, Bacterial Arylsulfatase of Pseudomonas aeruginosa and related proteins. Sulfatases catalyze the hydrolysis of sulfate esters from wide range of substrates, including steroids, carbohydrates and proteins. Sulfate esters may be formed from various alcohols and amines. The biological roles of sulfatase includes the cycling of sulfur in the environment, in the degradation of sulfated glycosaminoglycans and glycolipids in the lysosome, and in remodeling sulfated glycosaminoglycans in the extracellular space. The sulfatases are essential for human metabolism. At least eight human monogenic diseases are caused by the deficiency of individual sulfatases.	1.55732e-174
CP035531.1\|QBA24513.1\|631705_632482_-\|SDR-family-oxidoreductase	gnl\|CDD\|212491	cd05233, SDR_c, classical (c) SDRs. SDRs are a functionally diverse family of oxidoreductases that have a single domain with a structurally conserved Rossmann fold (alpha/beta folding pattern with a central beta-sheet), an NAD(P)(H)-binding region, and a structurally diverse C-terminal region. Classical SDRs are typically about 250 residues long, while extended SDRs are approximately 350 residues. Sequence identity between different SDR enzymes are typically in the 15-30% range, but the enzymes share the Rossmann fold NAD-binding motif and characteristic NAD-binding and catalytic sequence patterns. These enzymes catalyze a wide range of activities including the metabolism of steroids, cofactors, carbohydrates, lipids, aromatic compounds, and amino acids, and act in redox sensing. Classical SDRs have an TGXXX[AG]XG cofactor binding motif and a YXXXK active site motif, with the Tyr residue of the active site motif serving as a critical catalytic residue (Tyr-151, human prostaglandin dehydrogenase (PGDH) numbering). In addition to the Tyr and Lys, there is often an upstream Ser (Ser-138, PGDH numbering) and/or an Asn (Asn-107, PGDH numbering) contributing to the active site; while substrate binding is in the C-terminal region, which determines specificity. The standard reaction mechanism is a 4-pro-S hydride transfer and proton relay involving the conserved Tyr and Lys, a water molecule stabilized by Asn, and nicotinamide. Extended SDRs have additional elements in the C-terminal region, and typically have a TGXXGXXG cofactor binding motif. Complex (multidomain) SDRs such as ketoreductase domains of fatty acid synthase have a GGXGXXG NAD(P)-binding motif and an altered active site motif (YXXXN). Fungal type ketoacyl reductases have a TGXXXGX(1-2)G NAD(P)-binding motif. Some atypical SDRs have lost catalytic activity and/or have an unusual NAD(P)-binding motif and missing or unusual active site residues. Reactions catalyzed within the SDR family include isomerization, decarboxylation, epimerization, C=N bond reduction, dehydratase activity, dehalogenation, Enoyl-CoA reduction, and carbonyl-alcohol oxidoreduction.	1.70952e-60
CP035531.1\|QBA24510.1\|628274_629051_+\|ABC-transporter-substrate-binding-protein	gnl\|CDD\|270421	cd13703, PBP2_HisJ_LAO, Substrate binding domain of ABC-type histidine- and lysine/arginine/ornithine transporters; the type 2 periplasmic-binding protein fold. This subgroup includes the periplasmic-binding proteins, HisJ and LAO, that serve as initial receptors in the ABC transport of histidine and lysine-arginine-ornithine amino acids. They are belong to the type 2 periplasmic-binding fold protein (PBP2) superfamily, whose members are involved in chemotaxis and uptake of nutrients and other small molecules from the extracellular space as a primary receptor. PBP2 typically comprises of two globular subdomains connected by a flexible hinge and bind their ligand in the cleft between these domains in a manner resembling a Venus flytrap. After binding their specific ligand with high affinity, they can interact with a cognate membrane transport complex comprised of two integral membrane domains and two receptor cytoplasmically-located ATPase domains. This interaction triggers the ligand translocation across the cytoplasmic membrane energized by ATP hydrolysis.	8.0348e-114
CP035531.1\|QBA24512.1\|630888_631680_-\|molybdenum-cofactor-biosynthesis-protein-F	gnl\|CDD\|375179	pfam17409, MoaF_C, MoaF C-terminal domain. MoaF protein is essential for the production of the monoamine-inducible 30kDa protein in Klebsiella. It is necessary for reconstituting organoautotrophic growth in Ralstonia eutropha. It is conserved in Proteobacteria and some lower eukaryotes. The operon regulating the Moa genes is responsible for molybdenum cofactor biosynthesis. This entry corresponds to the C-terminal domain.	4.72423e-62
CP035531.1\|QBA24520.1\|639643_641143_-\|APC-family-permease	gnl\|CDD\|223605	COG0531, PotE, Amino acid transporters [Amino acid transport and metabolism].	2.96147e-48
CP035531.1\|QBA24509.1\|627076_628255_+\|amidohydrolase	gnl\|CDD\|349916	cd05666, M20_Acy1-like, M20 Peptidase aminoacylase 1 subfamily. Peptidase M20 family, uncharacterized subfamily of bacterial proteins predicted as putative amidohydrolases or hippurate hydrolases. These are a class of zinc binding homodimeric enzymes involved in hydrolysis of N-acetylated proteins. N-terminal acetylation of proteins is a widespread and highly conserved process that is involved in protection and stability of proteins. Several types of aminoacylases can be distinguished on the basis of substrate specificity. Aminoacylase 1 (ACY1) breaks down cytosolic aliphatic N-acyl-alpha-amino acids (except L-aspartate), especially N-acetyl-methionine and acetyl-glutamate into L-amino acids and an acyl group. However, ACY1 can also catalyze the reverse reaction, the synthesis of acetylated amino acids. ACY1 may also play a role in xenobiotic bioactivation as well as the inter-organ processing of amino acid-conjugated xenobiotic derivatives (S-substituted-N-acetyl-L-cysteine).	0
CP035531.1\|QBA24515.1\|634347_635535_-\|anaerobic-sulfatase-maturase	gnl\|CDD\|188457	TIGR03942, sulfatase_rSAM, anaerobic sulfatase-maturating enzyme. Members of this protein family are radical SAM family enzymes, maturases that prepare the oxygen-sensitive radical required in the active site of anaerobic sulfatases. This maturase role has led to many misleading legacy annotations suggesting that this enzyme maturase is instead a sulfatase regulatory protein. All members of the seed alignment are radical SAM enzymes encoded next to or near an anaerobic sulfatase. Note that a single genome may encode more than one sulfatase/maturase pair. [Protein fate, Protein modification and repair].	6.14433e-169
CP035531.1\|QBA24516.1\|635960_636644_+\|LuxR-family-transcriptional-regulator	gnl\|CDD\|197715	smart00421, HTH_LUXR, helix_turn_helix, Lux Regulon. lux regulon (activates the bioluminescence operon.	1.05166e-17
CP035531.1\|QBA24505.1\|623077_624160_-\|iron-ABC-transporter-permease	gnl\|CDD\|223682	COG0609, FepD, ABC-type Fe3+-siderophore transport system, permease component [Inorganic ion transport and metabolism].	2.3699e-77
CP035531.1\|QBA24517.1\|636761_637934_+\|MFS-transporter	gnl\|CDD\|340883	cd17325, MFS_MdtG_SLC18_like, bacterial MdtG-like and eukaryotic solute carrier 18 (SLC18) family of the Major Facilitator Superfamily of transporters. This family is composed of eukaryotic solute carrier 18 (SLC18) family transporters and related bacterial multidrug resistance (MDR) transporters including several proteins from Escherichia coli such as multidrug resistance protein MdtG, from Bacillus subtilis such as multidrug resistance proteins 1 (Bmr1) and 2 (Bmr2), and from Staphylococcus aureus such as quinolone resistance protein NorA. The family also includes Escherichia coli arabinose efflux transporters YfcJ and YhhS. MDR transporters are drug/H+ antiporters (DHA) that mediate the efflux of a variety of drugs and toxic compounds, and confer resistance to these compounds. The SLC18 transporter family includes vesicular monoamine transporters (VAT1 and VAT2), vesicular acetylcholine transporter (VAChT), and SLC18B1, which is proposed to be a vesicular polyamine transporter (VPAT). The MdtG/SLC18 family belongs to the Major Facilitator Superfamily (MFS) of membrane transport proteins, which are thought to function through a single substrate binding site, alternating-access mechanism involving a rocker-switch type of movement.	6.86718e-13
CP035531.1\|QBA24508.1\|626114_626570_+\|hypothetical-protein	gnl\|CDD\|378715	pfam11776, RcnB, Nickel/cobalt transporter regulator. RcnB is a family of Proteobacteria proteins. RcnB is required for maintaining metal ion homeostasis, in conjunction with the efflux pump RcnA, family NicO, pfam03824.	2.00361e-17

>CP035531.1|QBA24511.1|629179_630133_+|aldo/keto-reductase
MMTRPLGKTGFSIAPLVFGGNVFGWTIDEKTSFALLDAFVDHGFDAIDTADVYSRWAEGNQGGESETIIGRWLQARPGMRDKVKIFTKVGSDLGLPGHKGLSKAWIQQAVDDSLRRLNTDYIDLYFSHWPDPQTPVAETLEAFHSLQQAGKIRAMGASNLDAMQLAGALEVARKGGLPAWQVLQPEYNLYHRSAFEGALCDLCVSRDIGVVTYYSLASGFLTGKYRQPSDLTQSQRGSGIGKYLNPRGMRIIDTLAAVADEQGAKPAEVALAWLIGREGVTAPIASATSVAQVESFARAAALSLSAEQVARLDGASA
>CP035531.1|QBA24510.1|628274_629051_+|ABC-transporter-substrate-binding-protein
MKKSLLLWLALMASTSALAEGGKEIRFGVDPTFAPFEWKDPQGKLAGFDIDLGNAICQQLQAKCVWVESNFDGIIPALKARKFDAILSGMYMTEKRKAQIAFSDKLYNGPVFLVARKNTLQGNTPEQLKGKTIGVEQGSAQETYVNQHWRPQGINIVAYQGADSVVRDLESGRIDGAVLSGMMADYSFLQQPQGKEFAFVGGHLQDDTLFGAGAAIGLRKDDEALRQEINGAIAKILADGTYKKLAGKYFSFDVYSGT
>CP035531.1|QBA24509.1|627076_628255_+|amidohydrolase
MSDYVIPEIKATEAEMISIRHYLHANPELSLEEFNTSELVASKLTEWGYQVTRGLGKTGVVGSLSKGDSPRTIGLRADMDALPIEETTGLPWASTAPGKMHACGHDGHTTILLAAAKYIASPACQFNGTVHLIFQPAEEAIGGADLMIKDGLFEQFPCERIFGLHNMPGLPVGKLGFYAGNFMASADTVKITITGYGGHGAHPERTVDPIVAGAALVMALQSIVARNVPPGETAVVSVGTFQAGIASNVIPESAVMELSVRAMKPEIRDLLIKRIHELADFTAKSYGASSVVEVYDSYPVLTNSPEETDFARALALEVFGREGVLESVSPMNASEDFAFMLRERPGSYFLLGNGEKGEKGGCMVHNPGYDFNDDIITIGATLFARLVEKHCR
>CP035531.1|QBA24508.1|626114_626570_+|hypothetical-protein
MKKMISLAVILSCVLSVPAFADGPNDGHRPGQPTVWQNGPDHDGHAPQGGPDAHHQGDHDQRGPDRDGHDKRDLARHEQDHFAWRGNDFRKGHPAPAPFRGDEYRVRDWSDRGLPPPPEGHHWSYIDGNYVLIAAATGIITSILVSGALGH
>CP035531.1|QBA24507.1|625556_625946_+|hypothetical-protein
MKKAMIALSAILVAAPVFAATTHATDDTVAAANANANTAKEKLHQAQHEGEEQQLKAKHAAEGKQDSVGSQVSEGAQKTWNKTKEGTEKGWDKTKEVSEKGWNATKSGAEKGWDKTKTGAEELKNKVTE
>CP035531.1|QBA24506.1|624166_625285_-|ABC-transporter-substrate-binding-protein
MARKSVRSLLLTALLATPLLSYATQYPLTVTDLDGRQVTLAKEPQRIILQDGRDIMTLALLDRDNPFKRLVAWNNLAKKQDVATWQMLKTTWPQSATILDMGFSDKGNVDLESVIARQPDLMIAQLRARPALMESGVIDKLSALHVPVLFVDYEIAPAKDTAPSIDLLGKVLNRESQAKAFTDYYSQQLQTIRQKTAAITPKANVFVEALAGNSDACCFTHGHSGWGGLVEAVGANNIGSQLLPGASGFVSLEKIISMKPDAWIMTGSKRGNSQVLPLGYAVKPEAVKAQAQILLARPGVSQIPAVQEKRAYGVYHHFYNHPWNIVGMEYLAKDIYPQAFGDLNPDETYHYIVRHFTDLPDQPFVFSWQQSE
>CP035531.1|QBA24505.1|623077_624160_-|iron-ABC-transporter-permease
MRLTSDSVLDGLPAGTSGVMNDYRRIVRRRLLLILLLALLIVASLLLDFMLGPSGLPLQSLWQTLTDPASADPGTRAIVWDIRLPYAVMAIIVGLALGLAGAEMQTILNNPLASPFTLGVSSAAAFGAALAIVLGIGLPGIPGQWFISANAFIFALLAALLLDGITRWTQVATSGVILFGIALVFTFNALVSMLQFIANEDTLQGLVFWTMGSIDRASWSKVAILLVALALVMPLSLRSAWKLTALRLGEDRAISFGINVRRLRLTTLLRISILSALSVAFVGPIGFIGLVAPHIARMLFGEDHRFYLPASALIGALVLSLASIASKNLIPGAIIPVGIVTSLVGVPFFLSIILRHRGQV
>CP035531.1|QBA24504.1|622283_623081_-|ABC-transporter-ATP-binding-protein
MSDQTLSGLSLSHFSAGYPRRKVIENLTVPHLPRGKITALLGPNGSGKSTLMRAMAGLGPCRGELLLEGENLLTQPFSRRAEQVVYLPQTLPAGVHLHVLESIIVAQRAAGGRHSPQRQEEVMALLRQLGIAHLAMSYLDQLSGGQKQLVGLAQSLIRQPRLLLLDEPLSALDLNYQFHVMDLVRRETRRRNIVTLVVVHDINIALRHADHVLMLKAGQLLGDGTPAAVITPETLAAVYGVRGRIEPCSQGVRQVIIDGLVDSEA
>CP035531.1|QBA24503.1|621100_622243_+|HlyD-family-secretion-protein
METLMLLAYAALCIVVFKVFRIPLNKWTVPTAVLGGIALIGAVIFGMNYNFPYTDVGNQVFRTVPIVSQVRGRVQSVPVKPNQMLHKGDVLFTLDPTPFQAKVDDLQAQIKAASQDALSLNAALSQAQAELSRAVAQRDQSRREYARYREGHAQGAFSDQMVDTRLQTWKADEASVSAAQAKVVQARNALDSVVKGKNTTVASLLAQLQKAQFQLENTVVRAPEDGYVSTVGLRPGTMSTALGMIPLMTFVPVEGAASREYVAAFRQNALQRLHKGEPAELMFPAIPGTVFRGEVADVLPAIGESQFQGQGKLLTTDALNTHGRALVVLKVTDPRFAEYALPQGATLEAAVYSDHLKELSLIRKILIRMKSWENYIYLDH
>CP035531.1|QBA24502.1|620756_621101_+|DUF3302-domain-containing-protein
MTLDYVALAILIAVALILFYGVIVIHDIPYEIAKERRHPHQDAIHYAGWVSLFTLHALWPLLWIWATLWREDRGWGMRHIADEQQALHQRLETVVQQLEQVQREVDVLKAKEAK
>CP035531.1|QBA24512.1|630888_631680_-|molybdenum-cofactor-biosynthesis-protein-F
MTSEAVFIQVGALADGFAPHGNLLATASLPAGERFTFYADGSEPQQLVIENDQTLLWNGKRAPWRATALRPDILFIDFLDPERDNASISAVCNLTQRNATLVYGQLPDEAAARLDAFSRVEQGLPLTAVEARFVFARLDTQPGPLPDFTTALVGMRNQYTYSPTERYEHIYLNDNFYAWQCLDGVEKGLADVDRCHYVQVAEDLYLFVWREKIIPTLGVILIDLQLMRTDGKIMGYQGSDFGALSNFPVGASAKILNVTRHQE
>CP035531.1|QBA24513.1|631705_632482_-|SDR-family-oxidoreductase
MARVVVITGGGTGIGAACARLMRAAGDRVFITGRREAPLQAVANETGATALVGDAADGEVWRQRLLPAILDQTGGIDVLICSAGGMGNSPAAETSDRQWREALDANLNSAFVSVRACLASLIACRGNVLFVASIASLAAGPQACGYVTAKHALIGLMRSIARDYGPQGVRANAICPGWVTTPMADEEMIPLMQEHGLSLTEAYQRVCRDVPLRRPASPEEIAQACQFLCSPQAAIISGATLVADGGASIVDVPTLAFT
>CP035531.1|QBA24514.1|632569_634303_-|arylsulfatase
MNKKAMAAAVSMILAGGAHAAQQERPNVIVIIADDMGYSDISPFGGEIPTPNLQAMAEQGMRMSQYYTSPMSAPARSMLLTGNSNQQAGMGGMWWYDSTIGKEGYELRLTDRVTTMAERFKDAGYNTLMAGKWHLGFVPGATPKDRGFNHAFAFMGGGTSHFNDAIPLGTVEAFHTYYTRDGERVSLPDDFYSSEAYARQMNSWIKATPKEQPVFAWLAFTAPHDPLQAPDEWIKRFKGQYEQGYAEVYRQRIARLKALGIIHDDTPLPHLELDKEWEALTPEQQKYTAKVMQVYAAMIANMDAQIGTLMETLKQTGRDKNTLLVFLTDNGANPAQGFYYESTPEFWKQFDNSYDNVGRKGSFVSYGPHWANVSNAPYANYHKTTSAQGGINTDFMISGPGITRHGKIDASTMAVYDVAPTLYEFAGIDPNKSLAKKPVLPMIGVSFKRYLTGEVQEPPRGNYGVELHHQAAWVDGEWKLRRLVPHGLTAGDAPWQLFNLHDDPLETHDVAAEHPDRVKAMSEAYEAFAKRTMVTKAQGKMIDYVGIDSKTGRYLAVDPATMKPVPAPQAIPVSEIH
>CP035531.1|QBA24515.1|634347_635535_-|anaerobic-sulfatase-maturase
MLNIAALRQQQIPLAAEPRSPVPFHILMKPIGPACNLACRYCYYPQDETPVNKMDDARLEQFIRRYIAAQPAGAREINFVWQGGEPLLAGLSFYKKALALQERYAPDGVTISNSLQTNGTLINDAWCRLFREHGFIIGLSLEGNEALQDYHRPDKRGRSTWSAALRGIDLLHQHQVDFNLLVVVHNEMAAHAAAIYDRLVSLGARYLQFQPLMSEGAALREGYQLSADNWGRFMVGIWRQWRKRCDRGRVFVINIEQAWAQYFTHTSGSCVHSPRCGSNLVMEPDGQLYACDHLINAEHRLGRLDEQTLAAAVDASVQLPFGQQKSLRRECQTCSVKMVCQGGCPAHLNAAGNNRLCGGYYRFFSDILAPVRPFSRDLNGLKAWRAAFVGTAHTA
>CP035531.1|QBA24516.1|635960_636644_+|LuxR-family-transcriptional-regulator
MSALLKASRNDAIIARCLQTISQLIPLTSAVFYRVNNRLKPENYILHNISDNTHQQYLENFQPLDPLLPSHFSHQNTTVAAMTPRLCDRNRHYYHEFMLPNNVRDMTEIFIRRERRIVAGISLMRDVPFSSEERQRAQAVLPLVELAIRDCLQEEDDLPAILTAKEREIVGMVREGASNKLIARQLDISLSTVKTHLRNIFAKTEVVNRTELVSRTWMPAAQRTLHL
>CP035531.1|QBA24517.1|636761_637934_+|MFS-transporter
MSSTPLTDNALSRPAGLVVSLRLLAAIVIFAAIAPGILMTAPAVAAQLASEWQLKPGQIGWLFSAELGAMSLATLPAWWWMSRLDWRRVALMAGVVFLTANLASAVVTQYETLLAARFIASLAGGTLMILCISCAAGTPNPSRVYAFWVLGQLLLGMLGLLALPGLFATFGLKVVYLILAAIMLCCLPLVSAFPPRFQPLSVSRQQPSTALWRQALAVLAVLTFYISLSAVWTFIGTIGSAAGLSPTQVGLVLAAATVCGIIGAGGAALRGTRRADRLPVWLGYGLLIVSVGLLIGQPLLVRYAIAALLFKFTWTFVLPFILARVAGLDNSGRLMNSINLVIGGGMAAGPALAGALLQHFASADPLLAAAGVCALLSLILIVAASAAGKA
>CP035531.1|QBA24518.1|637950_639066_+|class-II-histone-deacetylase
MKRKTGFFFDERCFWHSTGLHAVTLPVGGWVQPPAGGGHAESPETKRRMKNLMDVSGLTPQLALRSAEPASLEDLRRIHPDSYLERFKAISDNGGGMLGKEAPLGPGSYEIACLSAGLACAAVEAVLKGELDNAYSLSRPPGHHCLPDQSMGFCFLANIPIAVERAKAQLGLGKVAIIDWDVHHGNGTQHIYLQRDDVLTISLHQDGCFPPGYAGEDDRGVGAGEGYNINIPLLAGAGDDSWRYALETIVIPALARFEPELIIIACGYDANAMDPLARMQLHSDSFRAMTEQVQQAADRLCGGKLVMVHEGGYAESYVPFCGLAVMEALSGIRTEVQDPLLEFIQQQQPRATFAQFQRQAIDRLAQQFGLL
>CP035531.1|QBA24519.1|639072_639666_-|DUF3156-family-protein
MSSVPWFETPLMNAVQRDLAGWPSEKLSERSALLRLNDATAVTFSVRQKRLFMASIHSCEFIVEGPVTRPVSGNIRAHQSGWWKRQPIRFIGGKGSEELAGYLNGFPNLQQTLSELDYRRFSLTFDSSGWRCSIEPWAASEVVCKMPPLRRYLRLEAQQRMLLLSVLAMVNQAVSQWMRGEIAEEKALTSPPSPRGS
>CP035531.1|QBA24520.1|639643_641143_-|APC-family-permease
MFSNRLASHLERGVVGFPTTLASSVGLIMASPVILTVTSGFGMGGDTFALAVLLAFIMMQAQVTTFAEAATLIPTTGSVYDYISCGMGRFFAITGALCAYLIVHIFAGTAETILAGIMALVNFESINAQMAAHQNTWMVGVGMVVIFGLLNAIGVEIFGKVEVVLTFGMWTTLTIFGLCGIFMAPVTHLSGWFGTPLNVSDINGLFGYIGMAMFMFVGCELVTPMAPEIKQAHRTIPRAMALGLLGVASCMFIYGAAINRQVENTVLDAANNVHLLDTPMAIPAFAERVMGHAGQYWLGVGLLLAGCATINTLMAAVPRIIYGMALDGALPRFLTWLHPRFKTPVIAIAIGVAIPCLHAWYLNGDLDRIVPLILAAVCAWGVAYLLVTLSVVMLRIRRPDLPRAYRSPWFPLPQIISSVGIIIAIVNITPPGMDSRQVLVPFGIMLGLTAAYALFWTVCVQRVNPFKPLVVEEVVERAINNYEKQTRGEMTPDVLRPLV
>CP035531.1|QBA24521.1|641548_641914_-|cupin-domain-containing-protein
MHAFKLKHPVPDLQPIGSVSLLGATPTAGDPQVAGAMIYGEPQDAFTCGLFSSTEGSFTMTYPFTEHATVLEGEVELTVAGGEPQRFAPGDSWFVKQGTEVEWKILTPRFVKHYLANVETR

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Crispr_ID: CP035531_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035531_3

938858-938935

Orphan

Consensus_repeat	Method
AAGGCGTCAGCCGCCACCCGGCA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035531_3

>merge|CP035531|3|938858-938935|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCAAAATAACCGCGCAATAGCACCGTAGGCCGGGCAAGGCGTCAGCCGCCGCCCGGCA

>CP035531|3|3|938858-938935|CRISPRCasFinder
AAGGCGTCAGCCGCCACCCGGCA	AAATAACCGCGCAATAGCACCGTAGGCCGGGC
AAGGCGTCAGCCGCCGCCCGGCA

Protein	Signature genes	Signature genes Name	Protein_function
CP035531.1\|QBA24761.1\|926023_928711_+\|cation-transporting-P-type-ATPase	unknown	unknown	gnl\|CDD\|319775
CP035531.1\|QBA24763.1\|930524_931742_+\|imidazolonepropionase	unknown	unknown	gnl\|CDD\|236478
CP035531.1\|QBA24771.1\|941139_942180_+\|biotin-synthase	unknown	unknown	gnl\|CDD\|185063
CP035531.1\|QBA24773.1\|943317_944073_+\|malonyl-ACP-O-methyltransferase-BioC	unknown	unknown	gnl\|CDD\|182340
CP035531.1\|QBA24772.1\|942176_943334_+\|8-amino-7-oxononanoate-synthase	unknown	unknown	gnl\|CDD\|235655
CP035531.1\|QBA24770.1\|939636_940926_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	unknown	unknown	gnl\|CDD\|181189
CP035531.1\|QBA24768.1\|936934_938317_+\|amino-acid-permease	unknown	unknown	gnl\|CDD\|182566
CP035531.1\|QBA24764.1\|931738_932695_+\|formimidoylglutamase	unknown	unknown	gnl\|CDD\|234974
CP035531.1\|QBA24769.1\|939089_939566_-\|kinase-inhibitor	unknown	unknown	gnl\|CDD\|182339
CP035531.1\|QBA24760.1\|925540_925972_+\|universal-stress-protein-UspG	unknown	unknown	gnl\|CDD\|185353
CP035531.1\|QBA24759.1\|923921_925007_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|273776
CP035531.1\|QBA24774.1\|944065_944788_+\|ATP-dependent-dethiobiotin-synthetase-BioD	unknown	unknown	gnl\|CDD\|234625
CP035531.1\|QBA24767.1\|935309_936836_+\|histidine-ammonia-lyase	unknown	unknown	gnl\|CDD\|236484
CP035531.1\|QBA24762.1\|928984_930268_-\|putative-acyl-CoA-thioester-hydrolase	unknown	unknown	gnl\|CDD\|236709
CP035531.1\|QBA24775.1\|944729_945452_-\|ATP-binding-cassette-domain-containing-protein	unknown	unknown	gnl\|CDD\|223487
CP035531.1\|QBA24766.1\|933624_935313_+\|urocanate-hydratase	unknown	unknown	gnl\|CDD\|235448
CP035531.1\|QBA24765.1\|932756_933482_+\|histidine-utilization-repressor	unknown	unknown	gnl\|CDD\|184961
CP035531.1\|QBA24776.1\|945538_945751_-\|dTDP-4-dehydrorhamnose-reductase	unknown	unknown	unknown
CP035531.1\|QBA24777.1\|945750_945930_-\|hypothetical-protein	unknown	unknown	unknown
CP035531.1\|QBA24778.1\|945874_946186_-\|hypothetical-protein	unknown	unknown	unknown

Protein	Function_ID	Function_description	E-value
CP035531.1\|QBA24761.1\|926023_928711_+\|cation-transporting-P-type-ATPase	gnl\|CDD\|319775	cd02080, P-type_ATPase_cation, P-type cation-transporting ATPase similar to Exiguobacterium aurantiacum Mna, an Na(+)-ATPase, and Synechocystis sp. PCC 6803 PMA1, a putative Ca(2+)-ATPase. This subfamily includes the P-type Na(+)-ATPase of an alkaliphilic bacterium Exiguobacterium aurantiacum Mna and cyanobacterium Synechocystis sp. PCC 6803 PMA1, a cation-transporting ATPase which may translocate calcium. The P-type ATPases, are a large family of integral membrane transporters that are of critical importance in all kingdoms of life. They generate and maintain (electro-) chemical gradients across cellular membranes, by translocating cations, heavy metals and lipids, and are distinguished from other main classes of transport ATPases (F- , V- , and ABC- type) by the formation of a phosphorylated (P-) intermediate state in the catalytic cycle.	0
CP035531.1\|QBA24763.1\|930524_931742_+\|imidazolonepropionase	gnl\|CDD\|236478	PRK09356, PRK09356, imidazolonepropionase; Validated.	0
CP035531.1\|QBA24771.1\|941139_942180_+\|biotin-synthase	gnl\|CDD\|185063	PRK15108, PRK15108, biotin synthase; Provisional.	0
CP035531.1\|QBA24773.1\|943317_944073_+\|malonyl-ACP-O-methyltransferase-BioC	gnl\|CDD\|182340	PRK10258, PRK10258, biotin biosynthesis protein BioC; Provisional.	1.36239e-160
CP035531.1\|QBA24772.1\|942176_943334_+\|8-amino-7-oxononanoate-synthase	gnl\|CDD\|235655	PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed.	0
CP035531.1\|QBA24770.1\|939636_940926_-\|adenosylmethionine--8-amino-7-oxononanoate-transaminase	gnl\|CDD\|181189	PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated.	0
CP035531.1\|QBA24768.1\|936934_938317_+\|amino-acid-permease	gnl\|CDD\|182566	PRK10580, proY, putative proline-specific permease; Provisional.	0
CP035531.1\|QBA24764.1\|931738_932695_+\|formimidoylglutamase	gnl\|CDD\|234974	PRK01722, PRK01722, formimidoylglutamase; Provisional.	6.77924e-178
CP035531.1\|QBA24769.1\|939089_939566_-\|kinase-inhibitor	gnl\|CDD\|182339	PRK10257, PRK10257, putative kinase inhibitor protein; Provisional.	7.58373e-117
CP035531.1\|QBA24760.1\|925540_925972_+\|universal-stress-protein-UspG	gnl\|CDD\|185353	PRK15456, PRK15456, universal stress protein UspG; Provisional.	7.32546e-44
CP035531.1\|QBA24759.1\|923921_925007_-\|efflux-RND-transporter-periplasmic-adaptor-subunit	gnl\|CDD\|273776	TIGR01730, COG0845:_Membrane-fusion_protein, RND family efflux transporter, MFP subunit. This model represents the MFP (membrane fusion protein) component of the RND family of transporters. RND refers to Resistance, Nodulation, and cell Division. It is, in part, a subfamily of pfam00529 (Pfam release 7.5) but hits substantial numbers of proteins missed by that model. The related HlyD secretion protein, for which pfam00529 is named, is outside the scope of this model. Attributed functions imply outward transport. These functions include nodulation, acriflavin resistance, heavy metal efflux, and multidrug resistance proteins. Most members of this family are found in Gram-negative bacteria. The proposed function of MFP proteins is to bring the inner and outer membranes together and enable transport to the outside of the outer membrane. Note, however, that a few members of this family are found in Gram-positive bacteria, where there is no outer membrane. [Transport and binding proteins, Unknown substrate].	1.94626e-66
CP035531.1\|QBA24774.1\|944065_944788_+\|ATP-dependent-dethiobiotin-synthetase-BioD	gnl\|CDD\|234625	PRK00090, bioD, ATP-dependent dethiobiotin synthetase BioD.	4.52132e-105
CP035531.1\|QBA24767.1\|935309_936836_+\|histidine-ammonia-lyase	gnl\|CDD\|236484	PRK09367, PRK09367, histidine ammonia-lyase; Provisional.	0
CP035531.1\|QBA24762.1\|928984_930268_-\|putative-acyl-CoA-thioester-hydrolase	gnl\|CDD\|236709	PRK10531, PRK10531, putative acyl-CoA thioester hydrolase.	0
CP035531.1\|QBA24775.1\|944729_945452_-\|ATP-binding-cassette-domain-containing-protein	gnl\|CDD\|223487	COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism].	3.17026e-74
CP035531.1\|QBA24766.1\|933624_935313_+\|urocanate-hydratase	gnl\|CDD\|235448	PRK05414, PRK05414, urocanate hydratase; Provisional.	0
CP035531.1\|QBA24765.1\|932756_933482_+\|histidine-utilization-repressor	gnl\|CDD\|184961	PRK14999, PRK14999, histidine utilization repressor; Provisional.	3.37417e-172

>CP035531.1|QBA24768.1|936934_938317_+|amino-acid-permease
MQQQHKPHLLRGLNARHIRFIALGSAIGTGLFYGSASAIKAAGPAVLLAYLIGGAAVFIVMRALGEMAVRNPVSGSFGSYARQYLGPLAGFITGWTYTFEMVIVALADVTAFGIYMGLWYPDVPRWIWILSIIFFIGAMNLCNVRVFGEMEFWLSLVKVVAIIAMMLAGAGIIFFGFGHSFPATGLENLWSHGGFAPNGWQGVIASLGIVMFAFGGVEIIGVTAAEAKDPKKVIPQAINTIPLRIILFYVCTLAVLMAIFPWNSFGEQGSPFVLIFDGLGIPAAATILNIIVISASISAINSDIFGAGRMMYGMSKEGLAPKSFQRIASNGVPWMTVVVMGGALLAAVVLNYLIPEQVFVLIASLAAFATVWVWLMILLSHFAMRRGLSAEERSQIAFPIPFWPVAPLLTLLFMGLVIAVLGMFAETRMALIAGLVWLGLLTVVWYARVRKTALQVATEQ
>CP035531.1|QBA24767.1|935309_936836_+|histidine-ammonia-lyase
MKSLTLIPGQLSLSQLRDVYSHPVNITLDSGAFAAIDESVACVNAILAEGRTAYGINTGFGLLAQTRISTEDLENLQRSLVLSHAAGVGEPLDDDLARLIMVLKINSLSRGFSGIRLSVIQALIGLVNAGVTPWIPAKGSVGASGDLAPLAHMSLTLIGEGKARVRGGDWLPATEALRQVGLEPITLAAKEGLALLNGTQASTAFALRGLFEAEDLFASAVVCGALTTEAALGSRRPFDARIHEVRGQRGQIDAAALYRHLLTDDSAISQSHHNCSKVQDPYSLRCQPQVMGACLTQIRQAAEVLLAEANAVSDNPLVFAAENDVISGGNFHAEPVAMAADNIALAIAEIGSLSERRIALMMDSHMSQLPPFLVKNGGVNSGFMIAQVTAAALASENKALSHPHSVDSLPTSANQEDHVSMAPAAGRRLWAMAENTRGVLAVEWLAAAQGLDMREGLTTSPLLEEARHLLRERVPHYTQDRYFAPDIDNAIALLAARHLTRLLPAVLH
>CP035531.1|QBA24766.1|933624_935313_+|urocanate-hydratase
MSQSKYRQLDVRAPRGTTLTAKSWLTEAPLRMLMNNLDPDVAENPHELVVYGGIGRAARNWECYDAIVKALKNLESDETLLVQSGKPVGVFKTHENSPRVLIANSNLVPHWATWEHFNELDAKGLAMYGQMTAGSWIYIGSQGIVQGTYETFVEAGRQHYQGSLKGRWVLTAGLGGMGGAQPLAATLAGACSLNIECQQSRIDFRLRTRYVDEQATSLDDALARIKKYTAEGRAISIALCGNAAEIVPELVKRGVRPDMVTDQTSAHDPLHGYLPKGWSWEEYQQKAESDPQGTILAAKRSMADHVQAMLAFHEMGVPTFDYGNNIRQMAQEVGVSNAFDFPGFVPAYIRPLFCRGIGPFRWVALSGDPQDIYKTDAKVKEIIKDDQHLHHWLDMARERISFQGLPARICWVGLEWRQKLGLAFNEMVRSGEVSAPIVIGRDHLDSGSVASPNRETEAMRDGSDAVSDWPLLNALLNTASGATWVSLHHGGGVGMGFSQHSGMVIVCDGTDEAAARIARVLHNDPATGVMRHADAGYEIAIECAAEQGLNLPMVAATQGNAK
>CP035531.1|QBA24765.1|932756_933482_+|histidine-utilization-repressor
MFAQQPRSAPAPFYEKVKQAISEKIHSGVWRPHDRIPSEAELVAQFGFSRMTINRALRELTDEGLLVRLQGVGTFVAEPKGQSALFEVRSIAAEIVARHHQHRCEVLLLEETRADHIQATALSVPEGTRIFHSLMVHYENEVPVQIEDRCVNAAVVPDYLHQDYTATTPHDYLSLIAPLTEGEHIVEAVQATAEECALLHIHAHDPCLLIRRRTWSTTHIVSHARLLFPGSRYRLQGRFGS
>CP035531.1|QBA24764.1|931738_932695_+|formimidoylglutamase
MMLWQATPASLWQGRDDSAEAPNALRLFQTIARAERFAPQEMPGDIALLGFACDEGVRRNKGRTGAADGPATLRRALANMASHQGHDRCVDMGTISVDGEQLEVAHQALREAVADCQRAGKRTLVLGGGHETAFGHGAGVLDAFPGEKVGIINLDAHLDLRFADCASSGTPFRQLALECDAQQRGFHYTCIGVSRAANTQALWDEAARRQVAIVEDLEVLTAFETRVLPELERNIAQFDRLYLTIDLDVLPAREMPAVSAPAALGVPLARLLRIVEPLCRSGKLQAVDLVEFNPLFDIDGQGARAAARVAWQIAHWWR
>CP035531.1|QBA24763.1|930524_931742_+|imidazolonepropionase
MTEATSELVIWRNGRLATLNPDHAQPYGLLERHALLVRDGRIAAIVAEDDVPSGRSIDLEGRLVTPGLIDCHTHLVFGGSRAQEWEQRLNGVSYQTISASGGGINSTVRATRDSSEAELLALAQPRLERLLREGVTTLEIKSGYGLDLPNERKMLRVARQLADHNGVELSATLLSAHATPPEYQGDANGYITLVCETILPTLWQEGLFESVDVFCENVGFSPQQTERVFQAAQALGIPVKGHVEQLSSLGGAQLVSRYHGLSADHIEYLTEEGVAAMRESGTVAALLPGAFYFLNETRKPPVELLRKYQVPMAVATDFNPGTSPFASMHLAMNMACVKFGLTPEEAWAGVTRHAARALGRQASHGQLAPGFVANFAIWDAEHPVEMVYEPGRSPLWHRVVQGELQ
>CP035531.1|QBA24762.1|928984_930268_-|putative-acyl-CoA-thioester-hydrolase
MNTYSVSRLALALAFGVTLSACSSTPADQQPSTQTAPGTTARPILNAEEAKNFTPAAYFQSLAPNAAAWTPSAISLPAQPDFIVGPAGTQGVTHTTIQAAVDAAIARHSNRRLYIAIMPGEYPGTVYVPAAPGALTLYGTGDKPIDVKISEAIDSEMDRNTWRRLVNPGGKYMPGKPAWYMFDSCQSKSAATVGVMCSAVFWSQNNGLQLQNLTIANNLGDSVDAGTHQAVALRSDGDQVQINKVNILGRQNTFFVTNSGVQNRLQDNRQTRTLVTNSYIEGDVDIVSGRGAVVFDNTDFRVVNSRTQKEAYVFAPATLKSVTYGFLATNSRFTASGDNVAQLGRALDVDGNSNGQVVIRDSAINEGFNIAQPWAAAVGSGRPFSGNTGSADDKGNLQRNLNDNGFNRMWEYNNRGVGSTVVAEPKQ
>CP035531.1|QBA24761.1|926023_928711_+|cation-transporting-P-type-ATPase
MNTDKPGAPYYQRSVEETLASVQSSPEGISGTEAATRLQQYGENALPQKPGKPAWLRFIAHFNDVLIYVLLAAALLKAVMGHWIDMAVILAVAVVNALIGFIQESNAEKSLQSIRNMLSSEAVAIRQGNHETIPTTSLVPGDIVVIRAGDRIPADLRVIEAHNLRVEEAILTGESTVVEKTTEPLSGDLPLGDRSNLLFSGTTVSSGAGKGIVVATGGDTELGHINQMMAGIEKHRTPLLVQMDKLGKAIFILILVMMAALFVFSLLFRDMPVSELMLSLISLAVASVPEGLPAIISIILSLGVQAMARQKAIIRKLPTVETLGAMTVICSDKTGTLTMNEMTVKAVITADSVYRVEGDSYEPVGKIYAIDDPTPVTIAPGSLFERYLRTIDLCNDSQLIKEESGLWKITGGPTEGALKVLAAKVTLPPLTSELRSKIPFDSQYKYMSTLYRLGEEEVVLVTGAPDVLFRLCQYQQSDSGLQPLDLPYWEGKIEEYAREGLRMVAAAWKPAAAGQTELTHQDLQQGVILLGVAGMMDPPRPEAITAIADCLQAGIRVKMITGDHPQTAMSIGKMLGIGNAGNAITGRELEVMDDAQLSVAAQQFDIFARTSPEDKFRLVQALQSKKEIVGMTGDGVNDAPALKQADVGVAMGIKGTEVTKEAADMVLTDDNFATIASAVREGRRVYDNLKKTILFVMPTNLAQGLLIVIALLAGNVLPLTPVLILWMNMATSATLSFGLAFEAGEKNIMRRPPRDPKIHVMDGFAIWRVAFVGSMIAVSAFILEAWLQPRGYSPEFIRTVLLQTLVTAQWFYMLNCRVSDGFSLTKGLLANKGIWIVSGVLLLLQLLIIYAPFMQMLFGTTGLPFRYWVITFIIGFAMFLIVELEKPLTRKWRSA
>CP035531.1|QBA24760.1|925540_925972_+|universal-stress-protein-UspG
MYKNIVVPVDVFDAGLADKALSHAKFLAQHSAGQIHLIHVIPAFSPVLTRGFISDARKMEDHLLNTAKEKLSELVKKNGLAEDASHLYVRSGNVRDQVIALTDELKADVVIVGSRNPGIQTHLLGSEAANIVRYAHVPVFVVR
>CP035531.1|QBA24759.1|923921_925007_-|efflux-RND-transporter-periplasmic-adaptor-subunit
MNRYFSLIPVVIIFTTACDQKAPTVESAPRMVKVAQVTAVGNTQQRTFPARIESGDSTELSFKRGGQVESLDIRQGASVAQGQTLARLNAREAQQRVNERQTAATLAQRQFDRFQTLAGRQAISQAEMDVQRANRDAANAALKIAREELAQMSLIAPFSGIAAGVHIRNHQVVAAGQPVITLTRTDLLDVVFSIPENLFTSLDIRNTAYRPVVRINTLPGREFTAEYKEHTGSSDNSTLTWQIVLTMPRPDDFPAVGGVSGTVTVNLGNLPASAGRETLIVPAEAVFNPDNRPKNEPVVWVVKGDNAHRYLEERKVAVGEVTSQGVAITDGLRAGEQVVAAGVSELHAGQPVRVWTRERGL
>CP035531.1|QBA24769.1|939089_939566_-|kinase-inhibitor
MKLISHDLQDGGKLPNRHVFNGMGYDGDNISPHLMWDDVPAGTKSFVVTCYDPDAPTGSGWWHWVVANLPADTRVLPQGAGSGQAELPEEAVQTRTDFGKAGYGGAAPPKGETHRYIFTVHALDVEKIEVDAEASGAMVGFNVHFHSLASASITALFS
>CP035531.1|QBA24770.1|939636_940926_-|adenosylmethionine--8-amino-7-oxononanoate-transaminase
MTLDDLAFDRRHIWHPYTSMTSPLPVYPVVSAHGCELSLAGGEQLVDGMSSWWAAIHGYNHPRLNAALKGQIDQMSHVMFGGITHPPAVALCRQLVAMTPASLECVFLADSGSVAVEVAMKMALQYWQAKGEPRRRFLTFRNGYHGDTFGAMSVCDPQNSMHSLWQGYLPDNLFAPAPQSRFDGEWDEMDMVPFARLMAAHRHEIAAVILEPIVQGAGGMRMYHPEWLKRVRKMCDREGILLIADEIATGFGRTGKLFACEHAGITADILCLGKALTGGTMTLSAAITTRTVAETISNGEAGCFMHGPTFMGNPLACAVASESLRLLESGEWQPQVAAIEAQLQAELAPARGSALVADVRVLGAIGVVETRRPVNMATLQRFFVEQGVWIRPFGRLIYLMPPYIITPEQLTRLTRAVNQAVQDETFFSE
>CP035531.1|QBA24771.1|941139_942180_+|biotin-synthase
MAHQPRWTMSQVTELFNKPLIDLLFEAQQIHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSARYKTGLEAERLMEVEQVLESARQAKNAGSTRFCMGAAWKNPNDRDMPYLEQMVKGVKALGLESCMTLGTLTDSQAQRLAEAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLDKVRDAGIKVCSGGIVGLGESVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRTIAIARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFRKLGINPQQTAVLEGDNEQQQRLEQALLTPDTEEYYNAAAL
>CP035531.1|QBA24772.1|942176_943334_+|8-amino-7-oxononanoate-synthase
MSWQQRIDRALDERRAAEAFRRRLPVTHGAGRWLEREGERWLNFSSNDYLGLSQHPAIIAAWQQGATRYGVGAGGSGHVSGYSEAHRALEEALADWLGYPRALLFISGFAANQALIAALVEKDDRIVADRLSHASLLEAASLSPAQLRRFTHNDPQQLAQLLAKPLAGEQLAVTEGIFSMDGDSAPLAAIHAATQAAGAVLLVDDAHGVGVVGDEGRGSCAAQAVRPELLVVTFGKAFGVSGAAVLCDEAMADYLLQFARHLIYSTAMPPAQAVALSAALGIIRSDEGQQRRDILAARIRQFREGMGEVSLGLTDSVSAIQPLIVGDNARALNLACRLRDAGCWATAIRPPTVPVGSARLRLTLTAAHHTEDINRLLEVLHGHSE
>CP035531.1|QBA24773.1|943317_944073_+|malonyl-ACP-O-methyltransferase-BioC
MATVNKQAVAAAFGRAASGYTQHDELQRRCADLLLRQLARRDFAQVLDAGCGPGSMSRYWREAGSVVTALDLSAGMLAQAQRNDAAQHYLLGDIEALPLPDACVDLAWSNLAVQWCDDLRAAISELYRVARPGGRVAFSTLLADSLPELNQAWQAIDDRPHANRFLSEAAVRAALSGLRATGEVHQISLPFADALSAMRSLKGIGATHLHQGRTAAPLGRGKLRELQLAWPQRQGICPLTYSLFTGVIERD
>CP035531.1|QBA24774.1|944065_944788_+|ATP-dependent-dethiobiotin-synthetase-BioD
MTKRFFVTGTDTEVGKTIASSALLQAANLLGFHTAGYKPVASGSELTGDGLRNEDALALQRHSRVALRYDQVNPYTFAEPTSPHIISADEGRPIAAARLSSGLRELEGLADWVLVEGAGGWFTPLSDSLTFADWAQAEQLPVILVVGVKLGCINHAMLTAQAVRQAGLPLAGWIANDVQPPGKRHAEYLATLKNRLAAPFLGEIPWLADIAQRDDLGQYLDLRALDPALSTAPAAAHPAP
>CP035531.1|QBA24775.1|944729_945452_-|ATP-binding-cassette-domain-containing-protein
MLNLQAVNHFYGNQHSLWNVDLVLRPGECIGVLGREGMGKTTLVNCIAGHLPVASGRMTWHDIGAPPQDLTPLSAQSRSAIGIGYVPQDKRIFSQLSVEENLHIALAAGKPGANASGGEIYEHFPELYALRQRKGASLSDDDQYQLALARALIVQPRLLILDEPSRGRGPRCLQKLADLLLRLNRDIGLTVLLAEQHLPFIRRVADRFCVLHRGRNVAEGDIMALDEPLLAQWITPDPAP
>CP035531.1|QBA24776.1|945538_945751_-|dTDP-4-dehydrorhamnose-reductase
MDNCPQPKTTAARRLSPFAVNRVAKNFYRTIFDNYPLKAARFLLLFAPPFSVGHRKSAAPALTRPDGIGV
>CP035531.1|QBA24777.1|945750_945930_-|hypothetical-protein
MKLLWQQMTLFLHPLILSNKLILKCFNEKTPFAPIQPQAAYALAYRRFSNSNTQGYPQE
>CP035531.1|QBA24778.1|945874_946186_-|hypothetical-protein
MQYKRFTHQSEPEKRISGRCLILPPGPFFANKLYWIFKQCVLMITPQKGLIGRQAGCKMRVRRNNPPAARVIPRKFYLLTFVKRTDETFMAADDAFLTPIDFI

You can click texts colored in the table to view more detailed information

Click the colored protein region to show detailed information

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1032533 : 1066914

Salmonella_phage(92.5%)

portal,tail,head,terminase,capsid,integrase,lysis,plate

attL 1021730:1021748|attR 1059935:1059953

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1021730:1021748	attL	NA	NA	NA	NA
QBA24855.1\|1032533_1033586_-\|integrase	integrase	A0A218M4I3	Erwinia_phage	3.6e-107	57.3
QBA24856.1\|1033677_1034229_-	DUF4276 family protein	NA	NA	NA	NA
QBA24857.1\|1034225_1035425_-	chromosome segregation protein SMC	NA	NA	NA	NA
QBA24858.1\|1035433_1036327_-	chromosome partitioning protein ParB	A0A1S6KZZ7	Salmonella_phage	7.1e-40	45.0
QBA24859.1\|1036452_1036674_+	regulator	NA	NA	NA	NA
QBA24860.1\|1036706_1037216_+	phage regulatory CII family protein	E5G6L3	Salmonella_phage	1.4e-85	96.4
QBA24861.1\|1037223_1037424_+	DUF2724 domain-containing protein	E5G6L4	Salmonella_phage	7.1e-33	98.5
QBA24862.1\|1037387_1037729_+	hypothetical protein	E5G6L5	Salmonella_phage	4.3e-54	96.5
QBA24863.1\|1037796_1038030_+	DUF2732 family protein	E5G6L6	Salmonella_phage	9.2e-32	96.1
QBA24864.1\|1038029_1038257_+	TraR/DksA family transcriptional regulator	E5G6L7	Salmonella_phage	2.7e-36	100.0
QBA24865.1\|1038253_1039111_+	DNA adenine methylase	E5G6L8	Salmonella_phage	3.5e-161	97.9
QBA24866.1\|1039107_1041522_+	replication endonuclease	E5G6L9	Salmonella_phage	0.0e+00	97.4
QBA24867.1\|1041675_1041864_+	hypothetical protein	E5G6M0	Salmonella_phage	1.6e-26	96.8
QBA24868.1\|1041802_1042108_+	DinI family protein	A0A1S6L014	Salmonella_phage	1.1e-32	89.6
QBA24869.1\|1042394_1042613_+	multidrug ABC transporter ATPase	NA	NA	NA	NA
QBA24870.1\|1042612_1043455_+	hypothetical protein	A0A0M4R2T6	Salmonella_phage	1.3e-59	48.5
QBA24871.1\|1043656_1045309_+	NTPase	X2KLG0	Campylobacter_phage	7.3e-14	28.3
QBA24872.1\|1045339_1046368_-\|portal	phage portal protein	E5G6M3	Salmonella_phage	6.5e-170	86.7
QBA24873.1\|1046367_1048134_-\|terminase	terminase ATPase subunit family protein	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.1
QBA24874.1\|1048276_1049110_+\|capsid	GPO family capsid scaffolding protein	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
QBA24875.1\|1049126_1050185_+\|capsid	phage major capsid protein, P2 family	E5G6M6	Salmonella_phage	9.9e-182	93.7
QBA24876.1\|1050188_1050839_+	hypothetical protein	E5G6M7	Salmonella_phage	8.7e-112	96.3
QBA24877.1\|1050934_1051399_+\|head	head completion/stabilization protein	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
QBA24878.1\|1051398_1051602_+\|tail	phage tail protein	E5G6M9	Salmonella_phage	6.8e-31	89.6
QBA24879.1\|1051605_1051821_+	hypothetical protein	E5G6N0	Salmonella_phage	1.8e-26	80.3
QBA28709.1\|1051840_1052314_+	lysozyme	E5G6N1	Salmonella_phage	3.7e-80	91.0
QBA24880.1\|1052315_1052693_+	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	3.0e-16	40.0
QBA24881.1\|1052689_1053118_+\|lysis	LysB family phage lysis regulatory protein	E5G6N2	Salmonella_phage	3.8e-47	75.9
QBA28710.1\|1053005_1053251_+	hypothetical protein	A0A1S6KZX6	Salmonella_phage	2.0e-29	74.1
QBA24882.1\|1053213_1053645_+\|tail	phage tail protein	E5G6N3	Salmonella_phage	1.7e-71	93.7
QBA24883.1\|1053637_1054084_+	phage virion morphogenesis protein	A0A1S6L001	Salmonella_phage	5.3e-60	81.8
QBA24884.1\|1054061_1055222_-	hypothetical protein	NA	NA	NA	NA
QBA24885.1\|1055298_1055877_+\|plate	phage baseplate assembly protein V	A0A1S6KZX7	Salmonella_phage	7.2e-94	86.5
QBA24886.1\|1055873_1056233_+\|plate	baseplate assembly protein	A0A1S6KZZ4	Salmonella_phage	3.6e-51	86.6
QBA24887.1\|1056219_1057128_+\|plate	baseplate assembly protein	A0A1S6KZY6	Salmonella_phage	9.2e-144	90.7
QBA24888.1\|1057120_1057726_+\|tail	phage tail protein I	A0A1S6L000	Salmonella_phage	4.0e-111	93.0
QBA24889.1\|1059157_1059634_+\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.4e-15	50.5
QBA24890.1\|1059767_1060940_+\|tail	phage tail sheath protein	A0A1S6KZY7	Salmonella_phage	8.6e-203	90.3
1059935:1059953	attR	NA	NA	NA	NA
QBA24891.1\|1060949_1061465_+\|tail	phage major tail tube protein	A0A1S6L002	Salmonella_phage	4.8e-89	94.7
QBA24892.1\|1061519_1061822_+\|tail	phage tail assembly protein	A0A1S6KZZ9	Salmonella_phage	5.3e-40	89.0
QBA24893.1\|1061836_1061956_+\|tail	GpE family phage tail protein	E5G6Q0	Salmonella_phage	2.8e-13	87.2
QBA24894.1\|1061948_1065026_+\|tail	phage tail tape measure protein	E5G6Q1	Salmonella_phage	0.0e+00	63.2
QBA24895.1\|1065022_1065508_+\|tail	phage tail protein	E5G6Q2	Salmonella_phage	1.7e-67	81.2
QBA24896.1\|1065504_1066605_+	phage late control D family protein	A0A1S6KZZ5	Salmonella_phage	2.9e-176	87.4
QBA28711.1\|1066695_1066914_+	transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-20	69.0

DBSCAN-SWA_2

1101375 : 1110849

Dickeya_phage(16.67%)

protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA24931.1\|1101375_1102491_+	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
QBA24932.1\|1102487_1104428_+	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
QBA24933.1\|1104504_1104726_-	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
QBA24934.1\|1105051_1105369_+\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
QBA24935.1\|1105399_1107679_+\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
QBA24936.1\|1107809_1108028_-	translation initiation factor IF-1	NA	NA	NA	NA
QBA24937.1\|1108381_1109083_-\|tRNA	leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
QBA24938.1\|1109127_1110849_-	cysteine/glutathione ABC transporter ATP-binding protein/permease CydC	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3

DBSCAN-SWA_3

1760662 : 1771550

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA25519.1\|1760662_1761283_-	aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0
QBA25520.1\|1761275_1762541_-	four-carbon acid sugar kinase family protein	A0A077SLJ7	Escherichia_phage	1.5e-232	99.0
QBA25521.1\|1762552_1763455_-	NAD(P)-dependent oxidoreductase	A0A077SLF7	Escherichia_phage	2.6e-159	99.7
QBA25522.1\|1763492_1763726_-	hypothetical protein	NA	NA	NA	NA
QBA25523.1\|1763716_1764478_+	DeoR/GlpR transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
QBA25524.1\|1764498_1765359_-	class A broad-spectrum beta-lactamase SHV-1	A0A077SL40	Escherichia_phage	4.4e-156	99.7
QBA25525.1\|1765656_1765917_+	hypothetical protein	A0A077SK33	Escherichia_phage	5.4e-41	98.8
QBA25526.1\|1766003_1767092_+	chromosome segregation protein SMC	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
QBA25527.1\|1767122_1768388_-	MFS transporter	NA	NA	NA	NA
QBA25528.1\|1768442_1771550_-	beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6

DBSCAN-SWA_4

2352282 : 2407649

Cronobacter_phage(25.0%)

coat,tail,head,tRNA,terminase,lysis

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA26073.1\|2352282_2354670_-\|tRNA	phenylalanine--tRNA ligase subunit beta	NA	NA	NA	NA
QBA26074.1\|2354685_2355669_-\|tRNA	phenylalanine--tRNA ligase subunit alpha	A0A2H4UW22	Bodo_saltans_virus	4.9e-34	42.6
QBA26075.1\|2355975_2356332_-	50S ribosomal protein L20	NA	NA	NA	NA
QBA26076.1\|2356382_2356580_-	50S ribosomal protein L35	NA	NA	NA	NA
QBA26077.1\|2356672_2357215_-	translation initiation factor IF-3	A0A2L0UZ54	Agrobacterium_phage	6.3e-15	32.5
QBA26078.1\|2357218_2359147_-\|tRNA	threonine--tRNA ligase	A0A2K9L297	Tupanvirus	2.3e-128	36.9
QBA26079.1\|2359599_2360271_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	5.3e-80	59.9
QBA26080.1\|2360263_2361529_-	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	1.3e-201	80.6
QBA28782.1\|2361528_2361819_-	hypothetical protein	K7PGV5	Enterobacterial_phage	4.2e-10	42.4
QBA26081.1\|2362246_2362837_+	sugar transferase	NA	NA	NA	NA
QBA26082.1\|2362885_2364253_-	hypothetical protein	S6CGH3	Klebsiella_phage	6.5e-218	81.2
QBA26083.1\|2365066_2367544_-	MoaD/ThiS family protein	F1C5A7	Cronobacter_phage	5.1e-197	45.2
QBA26084.1\|2367530_2367926_-	hypothetical protein	F1C5F2	Cronobacter_phage	8.0e-36	54.8
QBA26085.1\|2367922_2368393_-	hypothetical protein	R9TPR6	Aeromonas_phage	3.1e-26	39.1
QBA26086.1\|2368392_2368812_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	1.6e-29	47.1
QBA26087.1\|2368910_2371517_-\|tail	phage tail tape measure protein	A0A1B1W284	Salmonella_phage	1.6e-92	38.9
QBA26088.1\|2371559_2371889_-	hypothetical protein	A0A222YZ97	Escherichia_phage	5.5e-22	51.8
QBA26089.1\|2371893_2372352_-	hypothetical protein	NA	NA	NA	NA
QBA28783.1\|2372426_2372639_-	hypothetical protein	H6WRV2	Salmonella_phage	1.0e-13	58.8
QBA26090.1\|2372718_2373078_-	hypothetical protein	A0A1V0E5N7	Salmonella_phage	8.9e-34	55.4
QBA26091.1\|2373194_2373725_-	KilA-N domain-containing protein	A0A1V0E5P7	Salmonella_phage	7.1e-88	93.2
QBA26092.1\|2373905_2374610_-	hypothetical protein	G0ZNE7	Cronobacter_phage	4.3e-64	54.6
QBA26093.1\|2374677_2375442_-	hypothetical protein	G0ZNE6	Cronobacter_phage	4.4e-38	42.6
QBA26094.1\|2375500_2375884_-	hypothetical protein	NA	NA	NA	NA
QBA26095.1\|2375880_2376249_-	HK97 gp10 family phage protein	F1C5E3	Cronobacter_phage	1.0e-48	83.6
QBA26096.1\|2376251_2376614_-	hypothetical protein	G0ZNE2	Cronobacter_phage	7.4e-28	53.3
QBA26097.1\|2376613_2376787_-	50S ribosomal protein L13	I6R0P9	Salmonella_phage	5.4e-13	54.4
QBA26098.1\|2376786_2377167_-	hypothetical protein	F1C5E2	Cronobacter_phage	1.4e-29	56.1
QBA26099.1\|2377169_2377436_-	hypothetical protein	NA	NA	NA	NA
QBA26100.1\|2377445_2378543_-\|coat	phage coat protein	F1C5E1	Cronobacter_phage	6.7e-149	72.7
QBA26101.1\|2378554_2378986_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.4e-41	60.1
QBA26102.1\|2378989_2380375_-	DUF2213 domain-containing protein	F1C5D9	Cronobacter_phage	1.2e-166	64.2
QBA26103.1\|2380425_2380731_-	hypothetical protein	NA	NA	NA	NA
QBA26104.1\|2380819_2381815_-\|head	phage head morphogenesis protein	F1C5D8	Cronobacter_phage	3.7e-114	68.7
QBA26105.1\|2381741_2383211_-	DUF1073 domain-containing protein	F1C5D7	Cronobacter_phage	8.1e-150	56.6
QBA26106.1\|2383223_2384696_-\|terminase	terminase	A0A1W6JNY3	Morganella_phage	1.3e-248	82.5
QBA26107.1\|2384695_2385211_-\|terminase	terminase small subunit	I6PDJ6	Cronobacter_phage	1.1e-66	75.9
QBA26108.1\|2385238_2385574_+	hypothetical protein	NA	NA	NA	NA
QBA26109.1\|2385576_2385774_-	hypothetical protein	NA	NA	NA	NA
QBA26110.1\|2386098_2386455_-	hypothetical protein	NA	NA	NA	NA
QBA26111.1\|2386578_2387040_-\|lysis	lysis protein	M9NYX9	Enterobacteria_phage	3.2e-44	63.4
QBA26112.1\|2387036_2387567_-	lysozyme	K7PLY1	Enterobacteria_phage	9.3e-80	79.4
QBA26113.1\|2387569_2387818_-\|lysis	lysis protein	NA	NA	NA	NA
QBA26114.1\|2387888_2388161_-	hypothetical protein	NA	NA	NA	NA
QBA26115.1\|2388653_2389343_-	antiterminator	I6PDF8	Cronobacter_phage	6.9e-59	54.9
QBA26116.1\|2389339_2389480_-	YlcG family protein	NA	NA	NA	NA
QBA26117.1\|2389476_2390112_-	NinG family protein	M9NYX8	Enterobacteria_phage	4.5e-81	77.5
QBA26118.1\|2390104_2390275_-	hypothetical protein	G8C7V4	Escherichia_phage	5.7e-15	73.2
QBA26119.1\|2390274_2390730_-	hypothetical protein	K7P7B8	Enterobacteria_phage	1.4e-55	69.5
QBA26120.1\|2390920_2391178_-	DNA polymerase III subunit theta	G8C7V1	Escherichia_phage	5.8e-27	76.6
QBA26121.1\|2391253_2392039_-	hypothetical protein	NA	NA	NA	NA
QBA28784.1\|2392210_2392507_-	hypothetical protein	A0A076GCN9	Escherichia_phage	6.4e-14	78.3
QBA26122.1\|2392617_2392845_-	hypothetical protein	NA	NA	NA	NA
QBA26123.1\|2392844_2393243_-	hypothetical protein	NA	NA	NA	NA
QBA26124.1\|2394003_2394549_-	hypothetical protein	R9TME7	Aeromonas_phage	2.6e-08	41.1
QBA26125.1\|2394545_2394848_-	MarR family transcriptional regulator	NA	NA	NA	NA
QBA26126.1\|2394844_2395582_-	Replication protein P	A0A0K2FIT1	Enterobacteria_phage	3.1e-65	55.6
QBA28785.1\|2395578_2396544_-	replication protein	K7PGZ0	Enterobacteria_phage	1.8e-65	79.3
QBA26127.1\|2396603_2397401_-	DNA-binding protein	A0A2H4J902	uncultured_Caudovirales_phage	2.7e-91	72.8
QBA26128.1\|2397486_2397708_-	transcriptional regulator	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
QBA26129.1\|2397747_2397975_-	Cro/Cl family transcriptional regulator	A0A2I6PIE5	Escherichia_phage	1.9e-18	61.2
QBA26130.1\|2398043_2398766_+	helix-turn-helix transcriptional regulator	E7C9R0	Salmonella_phage	2.3e-73	62.0
QBA26131.1\|2398788_2398908_+	hypothetical protein	NA	NA	NA	NA
QBA26132.1\|2399055_2399979_+	hypothetical protein	A0A1R3Y6Z6	Salmonella_virus	6.6e-174	94.4
QBA26133.1\|2400632_2400839_+	cell division inhibitor protein	A0A0M4S6W3	Salmonella_phage	4.0e-31	92.6
QBA26134.1\|2400918_2401890_+	hypothetical protein	M9P0E1	Enterobacteria_phage	5.3e-65	89.0
QBA26135.1\|2401897_2402182_+	host nuclease inhibitor GamL	G8C7T1	Escherichia_phage	2.9e-40	80.9
QBA26136.1\|2402198_2402945_+	phage recombination protein Bet	A0A1I9LJN0	Stx_converting_phage	1.6e-64	67.2
QBA26137.1\|2402941_2403565_+	exonuclease	A0A0S2SY31	Pseudomonas_phage	3.1e-58	59.7
QBA26138.1\|2403593_2404250_+	DNA methyltransferase	G8C7S6	Escherichia_phage	3.9e-112	87.0
QBA26139.1\|2404246_2405416_+	DNA cytosine methyltransferase	Q858D4	Salmonella_phage	2.6e-138	65.0
QBA26140.1\|2405412_2405634_+	hypothetical protein	NA	NA	NA	NA
QBA26141.1\|2405630_2405831_+	hypothetical protein	NA	NA	NA	NA
QBA26142.1\|2405827_2406019_+	DUF1382 family protein	A0A0P0ZC60	Stx2-converting_phage	6.0e-13	62.7
QBA26143.1\|2406015_2406243_+	TraR/DksA family transcriptional regulator	A0A0K2FI84	Escherichia_phage	2.1e-12	52.2
QBA26144.1\|2406243_2406486_+	hypothetical protein	A0A1P8DTG1	Proteus_phage	1.7e-12	54.8
QBA26145.1\|2406425_2407649_-	DUF4102 domain-containing protein	A0A1P8DTG6	Proteus_phage	4.3e-136	59.0

DBSCAN-SWA_5

2612388 : 2695958

Enterobacterial_phage(29.17%)

portal,protease,holin,tail,tRNA,terminase,integrase

attL 2618783:2618800|attR 2699251:2699268

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA26332.1\|2612388_2614176_-\|tRNA	aspartate--tRNA ligase	A0A2K9L3L6	Tupanvirus	1.3e-11	27.2
QBA26333.1\|2614443_2615010_+	hydrolase	NA	NA	NA	NA
QBA26334.1\|2615006_2615825_+	DUF72 domain-containing protein	Q859D1	Escherichia_coli_phage	4.3e-60	81.9
QBA26335.1\|2615877_2616273_+	hypothetical protein	NA	NA	NA	NA
QBA26336.1\|2616312_2617056_+	carboxy-S-adenosyl-L-methionine synthase CmoA	F5B419	Synechococcus_phage	4.1e-25	30.0
QBA26337.1\|2617052_2618057_+\|tRNA	tRNA 5-methoxyuridine(34)/uridine 5-oxyacetic acid(34) synthase CmoB	NA	NA	NA	NA
QBA26338.1\|2618138_2618882_-	copper homeostasis protein CutC	NA	NA	NA	NA
2618783:2618800	attL	NA	NA	NA	NA
QBA26339.1\|2618958_2619528_-	VOC family protein	NA	NA	NA	NA
QBA26340.1\|2619763_2621497_+\|tRNA	arginine--tRNA ligase	A0A2K9L6Z2	Tupanvirus	1.8e-87	33.8
QBA26341.1\|2621558_2622698_-	glycoside hydrolase family 105 protein	NA	NA	NA	NA
QBA26342.1\|2622702_2624286_-	MFS transporter	NA	NA	NA	NA
QBA26343.1\|2624638_2625067_+	universal stress protein UspC	NA	NA	NA	NA
QBA26344.1\|2625090_2626515_-	alpha,alpha-trehalose-phosphate synthase	NA	NA	NA	NA
QBA26345.1\|2626489_2627278_-	trehalose-phosphatase	NA	NA	NA	NA
QBA28795.1\|2627439_2628420_-	L-arabinose ABC transporter permease AraH	NA	NA	NA	NA
QBA26346.1\|2628434_2629949_-	L-arabinose ABC transporter ATP-binding protein AraG	A0A2R8FG22	Brazilian_cedratvirus	6.9e-11	30.0
QBA26347.1\|2630011_2630992_-	arabinose ABC transporter substrate-binding protein	NA	NA	NA	NA
QBA26348.1\|2631586_2631790_-	hypothetical protein	NA	NA	NA	NA
QBA26349.1\|2631883_2632393_+	non-heme ferritin-like protein	NA	NA	NA	NA
QBA26350.1\|2632463_2632622_-	succinate dehydrogenase	NA	NA	NA	NA
QBA26351.1\|2632636_2634199_+	MFS transporter	NA	NA	NA	NA
QBA26352.1\|2634236_2634488_-	DUF2766 domain-containing protein	NA	NA	NA	NA
QBA26353.1\|2634638_2636060_+	MFS transporter	NA	NA	NA	NA
QBA26354.1\|2636109_2636748_-	hypothetical protein	NA	NA	NA	NA
QBA28796.1\|2636918_2637098_+	hypothetical protein	NA	NA	NA	NA
QBA26355.1\|2637155_2637653_+	non-heme ferritin	NA	NA	NA	NA
QBA26356.1\|2637688_2637928_-	DUF2492 family protein	NA	NA	NA	NA
QBA26357.1\|2638119_2639331_+	tyrosine transporter TyrP	NA	NA	NA	NA
QBA26358.1\|2639355_2640024_-	YecA family protein	NA	NA	NA	NA
QBA26359.1\|2640122_2641004_-	dihydrodipicolinate synthase family protein	NA	NA	NA	NA
QBA26360.1\|2641635_2645475_-	DNA-binding protein	NA	NA	NA	NA
QBA26361.1\|2645640_2647131_-\|tail	tail fiber domain-containing protein	A0A0P0IDN1	Klebsiella_phage	6.1e-137	67.8
QBA26362.1\|2647199_2656133_-	DUF1983 domain-containing protein	Q6UAW1	Klebsiella_phage	0.0e+00	43.2
QBA26363.1\|2656195_2656786_-\|tail	tail assembly protein	K7PHE5	Enterobacteria_phage	2.5e-81	77.0
QBA26364.1\|2656817_2657528_-	peptidase P60	Q6UAW4	Klebsiella_phage	1.1e-136	90.7
QBA26365.1\|2657529_2658285_-\|tail	phage minor tail protein L	Q6UAW5	Klebsiella_phage	1.3e-130	84.1
QBA26366.1\|2658281_2658629_-\|tail	phage tail protein	K7PJT2	Enterobacteria_phage	5.2e-39	67.0
QBA26367.1\|2658633_2661777_-\|tail	phage tail tape measure protein	E4WL33	Enterobacteria_phage	0.0e+00	73.0
QBA26368.1\|2661760_2662075_-\|tail	phage tail assembly protein T	E4WL32	Enterobacteria_phage	5.0e-41	75.0
QBA26369.1\|2662095_2662524_-\|tail	phage minor tail protein G	M9NZD7	Enterobacteria_phage	2.1e-37	60.7
QBA26370.1\|2662534_2663278_-\|tail	phage tail protein	K7PKX6	Enterobacterial_phage	1.7e-111	83.0
QBA26371.1\|2663286_2663688_-\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	2.7e-55	75.6
QBA26372.1\|2663684_2664263_-\|tail	phage tail protein	K7PMB7	Enterobacterial_phage	1.7e-79	81.2
QBA26373.1\|2664266_2664542_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	1.1e-23	57.1
QBA26374.1\|2664534_2664861_-	DUF2190 family protein	K7PJY3	Enterobacterial_phage	8.1e-34	66.7
QBA26375.1\|2666786_2667575_+	hypothetical protein	NA	NA	NA	NA
QBA28797.1\|2667682_2668153_-	DUF1441 family protein	A0A291AWV8	Escherichia_phage	4.7e-35	55.0
QBA26376.1\|2668346_2670260_-	peptidase	K7PKX4	Enterobacterial_phage	5.5e-215	57.7
QBA26377.1\|2670256_2670451_-	hypothetical protein	NA	NA	NA	NA
QBA26378.1\|2670708_2671431_+	HEPN domain-containing protein	NA	NA	NA	NA
QBA26379.1\|2671689_2673060_-	AAA family ATPase	A0A2H4JFA4	uncultured_Caudovirales_phage	1.1e-204	79.6
QBA26380.1\|2673056_2673425_-	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	8.5e-56	90.2
QBA26381.1\|2673421_2673676_-	hypothetical protein	NA	NA	NA	NA
QBA26382.1\|2673668_2673947_-	host cell division inhibitor Icd-like protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.8e-19	60.5
QBA26383.1\|2674082_2674274_+	toxin-antitoxin system HicB family antitoxin	NA	NA	NA	NA
QBA26384.1\|2674298_2675648_+	hypothetical protein	A0A1W6JNS5	Morganella_phage	4.4e-235	88.7
QBA26385.1\|2675713_2675938_-	AlpA family phage regulatory protein	NA	NA	NA	NA
QBA26386.1\|2675939_2677175_-\|integrase	site-specific integrase	A0A2H4JB45	uncultured_Caudovirales_phage	6.5e-100	43.0
QBA28798.1\|2677122_2677641_-\|protease	Clp protease ClpP	K7PKX4	Enterobacterial_phage	7.0e-48	91.3
QBA26387.1\|2677654_2679157_-\|portal	phage portal protein	K7PHM5	Enterobacterial_phage	8.9e-245	82.8
QBA26388.1\|2679156_2679369_-	hypothetical protein	A5LH28	Enterobacteria_phage	2.9e-24	80.0
QBA26389.1\|2679365_2681468_-\|terminase	phage terminase large subunit family protein	K7PH52	Enterobacterial_phage	0.0e+00	84.0
QBA26390.1\|2681467_2681956_-	DUF1441 family protein	K7PJY2	Enterobacterial_phage	1.3e-72	87.7
QBA26391.1\|2682187_2682610_-	hypothetical protein	Q6UAS0	Klebsiella_phage	1.7e-39	59.9
QBA26392.1\|2682606_2682924_-	hypothetical protein	NA	NA	NA	NA
QBA28799.1\|2683378_2683600_-	DNA gyrase subunit B	NA	NA	NA	NA
QBA26393.1\|2683707_2683896_-	hypothetical protein	NA	NA	NA	NA
QBA26394.1\|2684976_2685327_-	hypothetical protein	R9TPM9	Aeromonas_phage	1.8e-10	39.8
QBA26395.1\|2685323_2685821_-	lysozyme	A0A1V0E5Q7	Salmonella_phage	1.9e-79	85.8
QBA26396.1\|2685820_2686036_-\|holin	holin	A5LH82	Enterobacteria_phage	7.9e-30	87.3
QBA26397.1\|2686825_2687446_-	DUF4760 domain-containing protein	Q8HA56	Vibrio_phage	4.1e-18	35.1
QBA26398.1\|2687844_2688423_-	DUF1133 family protein	A0A0U2S606	Escherichia_phage	1.3e-50	56.7
QBA26399.1\|2688436_2689417_-	DUF968 domain-containing protein	A0A291AWV9	Escherichia_phage	6.4e-135	67.5
QBA26400.1\|2689441_2690251_-	Dam family site-specific DNA-(adenine-N6)-methyltransferase	A0A1C9II58	Salmonella_phage	4.5e-110	69.3
QBA26401.1\|2690247_2691162_-	transcriptional regulator	H2DE83	Erwinia_phage	3.1e-30	59.6
QBA26402.1\|2691124_2691331_-	DUF4222 domain-containing protein	S5M7S5	Escherichia_phage	4.8e-16	70.9
QBA26403.1\|2691568_2692021_-	hypothetical protein	K7PJS5	Enterobacterial_phage	3.5e-67	87.8
QBA26404.1\|2692055_2692253_-	hypothetical protein	K7PHB1	Enterobacterial_phage	3.0e-23	84.6
QBA26405.1\|2692352_2693009_+	helix-turn-helix domain-containing protein	K7PLZ5	Enterobacterial_phage	1.5e-108	88.1
QBA26406.1\|2693354_2693654_+	hypothetical protein	K7PJS4	Enterobacterial_phage	1.5e-13	49.5
QBA26407.1\|2693653_2694439_+	hypothetical protein	C7BGF1	Burkholderia_phage	2.3e-58	50.6
QBA26408.1\|2694435_2694627_+	hypothetical protein	A0A2R2Z313	Escherichia_phage	7.3e-27	88.9
QBA26409.1\|2694693_2694924_+	DUF4224 domain-containing protein	NA	NA	NA	NA
QBA26410.1\|2694923_2695958_+\|integrase	integrase	K7PLZ2	Enterobacterial_phage	3.5e-123	63.1
2699251:2699268	attR	NA	NA	NA	NA

DBSCAN-SWA_6

2832677 : 2839584

Bacillus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA26520.1\|2832677_2834156_+	two-component system sensor histidine kinase BaeS	W8CYF6	Bacillus_phage	8.5e-30	28.3
QBA26521.1\|2834152_2834875_+	two-component system response regulator BaeR	W8CYM9	Bacillus_phage	8.3e-31	33.2
QBA26522.1\|2835193_2836555_+	U32 family peptidase	Q6DW11	Phage_TP	1.8e-207	94.8
QBA28810.1\|2836800_2837694_+	lipid kinase YegS	A0A1V0SBJ0	Catovirus	6.1e-15	29.8
QBA26523.1\|2837936_2838710_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	3.9e-26	36.7
QBA26524.1\|2838720_2839584_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	5.7e-10	27.5

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP035531

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection