CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Target MGE spacer number	Prophage number
CP035536	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 plasmid pKp711-1, complete sequence	0 crisprs	c2c9_V-U4,RT,cas3,csa3	0	2
CP035540	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 chromosome, complete genome	1 crisprs	csa3,cas3,RT,DEDDh,DinG,WYL	1	10
CP035538	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 plasmid pKp711-3, complete sequence	0 crisprs	RT	0	2
CP035539	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 plasmid pKp711-4, complete sequence	0 crisprs	NA	0	0
CP035537	Klebsiella pneumoniae subsp. pneumoniae strain CCRI-21711 plasmid pKp711-2, complete sequence	0 crisprs	NA	0	1

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

6210 : 43185

Shigella_phage(15.79%)

integrase,transposase,holin

attL 5540:5556|attR 37915:37931

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
5540:5556	attL	NA	NA	NA	NA
QBA57785.1\|6210_6606_+\|transposase	ISEcl1 transposase, OrfA	Q76S41	Shigella_phage	1.4e-43	75.4
QBA57786.1\|6563_7445_+\|transposase	ISEcl1-like transposase, OrfB	Q9ZXG3	Shigella_phage	1.2e-100	63.2
QBA57787.1\|7829_8333_+\|transposase	IS1 transposase OrfB	U5P0U6	Shigella_phage	1.6e-84	93.2
QBA57788.1\|8484_10482_+\|holin	choline transporter	A0A2I7QNT1	Vibrio_phage	9.7e-21	25.9
QBA57789.1\|10544_11822_+	hypothetical protein	NA	NA	NA	NA
QBA57790.1\|11856_12048_+	hypothetical protein	NA	NA	NA	NA
QBA57791.1\|12804_14220_-	diguanylate cyclase	NA	NA	NA	NA
QBA57792.1\|14255_14384_-	hypothetical protein	NA	NA	NA	NA
QBA57793.1\|14860_15118_+	hypothetical protein	NA	NA	NA	NA
QBA57794.1\|15894_16713_-\|transposase	IS903B-like transposase	Q9MCT5	Escherichia_phage	4.2e-156	98.5
QBA57795.1\|17115_18063_-	diguanylate cyclase	G3MA91	Bacillus_virus	1.8e-12	30.6
QBA57796.1\|19197_19938_+\|integrase	integrase	I3WFA4	Macacine_betaherpesvirus	5.4e-25	58.6
QBA57797.1\|20654_21665_-	replication initiation protein RepA, IncFIB family	J9Q7H0	Salmonella_phage	8.8e-87	55.9
QBA57798.1\|22416_23583_+	plasmid-partitioning protein ParA	A0A2I6B2X3	Macacine_betaherpesvirus	1.4e-224	97.7
QBA57799.1\|23582_24554_+	plasmid-partitioning protein ParB	I3WF22	Macacine_betaherpesvirus	4.1e-150	86.6
QBA57800.1\|24553_25516_+	hypothetical protein	NA	NA	NA	NA
QBA57801.1\|25444_25777_-	hypothetical protein	NA	NA	NA	NA
QBA57802.1\|26050_26335_+\|transposase	IS609 transposase OrfA	A0A1W6JP07	Morganella_phage	1.0e-40	86.8
QBA57803.1\|26331_27189_+\|transposase	IS609 transposase OrfB	A0A1B0VCD8	Salmonella_phage	1.0e-128	80.9
QBA57804.1\|27505_28777_-	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	5.6e-155	63.7
QBA57805.1\|28776_29202_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	8.3e-31	49.6
QBA57806.1\|29302_30523_+\|transposase	ISKox3 transposase	NA	NA	NA	NA
QBA57807.1\|30931_32416_+	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
QBA57808.1\|32649_32880_+	hypothetical protein	NA	NA	NA	NA
QBA57809.1\|33400_33826_+	antirestriction protein	NA	NA	NA	NA
QBA57810.1\|34062_34317_+	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	1.2e-11	50.0
QBA57811.1\|34351_34669_+	hypothetical protein	NA	NA	NA	NA
QBA57812.1\|35450_35678_+	hypothetical protein	NA	NA	NA	NA
QBA57813.1\|35769_36000_+	hypothetical protein	NA	NA	NA	NA
QBA57814.1\|36051_37407_+	hypothetical protein	NA	NA	NA	NA
QBA57815.1\|37454_38018_+	SAM-dependent methyltransferase	A8HNV9	Thalassomonas_phage	1.3e-18	34.1
37915:37931	attR	NA	NA	NA	NA
QBA57816.1\|38793_39336_+	single-stranded DNA-binding protein	A0A0A0P1Q9	Enterobacteria_phage	6.0e-50	76.7
QBA57817.1\|39384_39633_+	hypothetical protein	NA	NA	NA	NA
QBA57818.1\|39702_41739_+	ParB-like partition protein	G8DH78	Emiliania_huxleyi_virus	6.9e-22	25.4
QBA57819.1\|41805_42189_+	conjugation system SOS inhibitor PsiB	NA	NA	NA	NA
QBA57820.1\|41928_43185_-\|transposase	ISKpn28 transposase	NA	NA	NA	NA

DBSCAN-SWA_2

55209 : 118054

Escherichia_phage(30.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA57842.1\|55209_56472_-\|transposase	ISEcp1 transposase	A0A1B0VDR3	Salmonella_phage	1.3e-39	100.0
QBA57843.1\|57138_58563_+	conjugal transfer protein TraB	NA	NA	NA	NA
QBA57844.1\|58676_59261_+	conjugal transfer protein TraV	NA	NA	NA	NA
QBA57845.1\|59392_59803_+	hypothetical protein	NA	NA	NA	NA
QBA57846.1\|59908_60127_+	hypothetical protein	NA	NA	NA	NA
QBA57847.1\|60127_60457_+	hypothetical protein	NA	NA	NA	NA
QBA57848.1\|60523_60928_+	hypothetical protein	NA	NA	NA	NA
QBA57849.1\|61311_61704_+	hypothetical protein	NA	NA	NA	NA
QBA57850.1\|61775_64418_+	conjugal transfer ATP-binding protein TraC	NA	NA	NA	NA
QBA57851.1\|64414_64804_+	conjugal transfer protein TrbI	NA	NA	NA	NA
QBA57852.1\|64803_65439_+	conjugal transfer pilus assembly protein TraW	NA	NA	NA	NA
QBA57853.1\|65473_65875_+	hypothetical protein	NA	NA	NA	NA
QBA57854.1\|65871_66861_+	conjugal transfer protein TraU	NA	NA	NA	NA
QBA57855.1\|66873_67512_+	conjugal transfer protein TrbC	NA	NA	NA	NA
QBA57856.1\|67570_69526_+	conjugal transfer protein TraN	NA	NA	NA	NA
QBA57857.1\|69557_69812_+	conjugal transfer protein TrbE	NA	NA	NA	NA
QBA57858.1\|69789_70038_+	hypothetical protein	NA	NA	NA	NA
QBA57859.1\|70050_70377_+	hypothetical protein	NA	NA	NA	NA
QBA57860.1\|70397_71150_+	conjugal transfer protein TraF	NA	NA	NA	NA
QBA57861.1\|71160_71400_+	conjugal transfer protein TraQ	NA	NA	NA	NA
QBA57862.1\|71371_71929_+	conjugal transfer protein TrbB	NA	NA	NA	NA
QBA57863.1\|71974_72418_+	conjugal transfer protein TrbF	NA	NA	NA	NA
QBA57864.1\|72407_73775_+	conjugal transfer protein TraH	NA	NA	NA	NA
QBA57865.1\|73774_76597_+	conjugal transfer mating pair stabilization protein TraG	NA	NA	NA	NA
QBA57866.1\|76619_77222_+	conjugal transfer protein TraS	NA	NA	NA	NA
QBA57867.1\|77472_78204_+	conjugal transfer protein TraT	NA	NA	NA	NA
QBA57868.1\|78395_79085_+	hypothetical protein	NA	NA	NA	NA
QBA57869.1\|79211_81521_+	conjugal transfer protein TraD	NA	NA	NA	NA
QBA57870.1\|81520_86779_+	conjugal transfer protein TraI	A0A1P8DII4	Virus_Rctr197k	5.2e-05	33.3
QBA57871.1\|86868_87594_+	conjugal transfer protein TraX	NA	NA	NA	NA
QBA57872.1\|87665_88259_+	conjugal transfer fertility inhibition protein FinO	NA	NA	NA	NA
QBA57873.1\|88425_89022_+	hypothetical protein	NA	NA	NA	NA
QBA57874.1\|89194_90175_+\|transposase	ISEc68 transposase	Q38213	Escherichia_phage	1.4e-153	80.9
QBA57875.1\|90355_90631_+\|transposase	IS1 transposase, OrfA	Q71TE9	Escherichia_phage	2.0e-46	98.9
QBA57876.1\|91357_92881_+	type I restriction-modification system subunit M	A0A2H4PQP4	Staphylococcus_phage	2.4e-88	38.9
QBA57877.1\|92870_94109_+	type I restriction-modification system subunit S	NA	NA	NA	NA
QBA57878.1\|94105_94789_+	YecA family protein	NA	NA	NA	NA
QBA57879.1\|94841_98126_+	type I restriction-modification system subunit R	A0A220A398	Liberibacter_phage	4.3e-66	27.6
QBA57880.1\|98122_98878_+	metal-dependent hydrolase	NA	NA	NA	NA
QBA57881.1\|99737_101189_+	hypothetical protein	NA	NA	NA	NA
QBA57882.1\|101181_103224_+	hypothetical protein	NA	NA	NA	NA
QBA57883.1\|103410_109146_+	DNA helicase UvrD	NA	NA	NA	NA
QBA57884.1\|109168_109339_+	hypothetical protein	NA	NA	NA	NA
QBA57885.1\|109599_110004_+\|transposase	ISKpn24 transposase, OrfA	A0A0P0ZCV4	Stx2-converting_phage	4.3e-69	98.5
QBA57886.1\|110000_110348_+\|transposase	ISKpn24 transposase, OrfB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0
QBA57887.1\|111667_113041_-	methyl-accepting chemotaxis protein	A0A1B0V854	Salmonella_phage	5.1e-53	99.1
QBA57888.1\|113144_113993_-	hypothetical protein	NA	NA	NA	NA
QBA57889.1\|114201_114390_-	hypothetical protein	NA	NA	NA	NA
QBA57890.1\|114503_115088_-	macrolide resistance transcriptional repressor protein MphR(A)	NA	NA	NA	NA
QBA57891.1\|115087_116326_-	major facilitator family transporter	NA	NA	NA	NA
QBA57892.1\|116322_117228_-	macrolide 2'-phosphotransferase	NA	NA	NA	NA
QBA57893.1\|117349_118054_-\|transposase	IS26 transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

2. CP035540

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CRISPR-Cas detection and classification

Crispr_ID: CP035540_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035540_2

4454646-4454740

Orphan

Consensus_repeat	Method
ACTATGGTTTTTATGGTTTTTATT	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035540_2

>merge|CP035540|2|4454646-4454740|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATGGTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATGACTGTGGTTTTTATGGTTTTTATT

>CP035540|2|2|4454646-4454740|CRISPRCasFinder
TTAATGGTCACTATGGTTTTTATG	GTTTTTATTCGCTGAACTGCCCGGGAGTGATATATCTCTGATTTATG
ACTGTGGTTTTTATGGTTTTTATT

Protein	Signature genes	Signature genes Name	Protein_function
CP035540.1\|QBA62340.1\|4460701_4461988_+\|Chaperone-SurA-precursor	unknown	unknown	gnl\|CDD\|236758
CP035540.1\|QBA62329.1\|4443764_4445267_+\|L-arabinose-isomerase	unknown	unknown	gnl\|CDD\|179503
CP035540.1\|QBA62331.1\|4446275_4448633_+\|DNA-polymerase-II	unknown	unknown	gnl\|CDD\|235595
CP035540.1\|QBA62333.1\|4451739_4452399_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	unknown	unknown	gnl\|CDD\|236659
CP035540.1\|QBA62344.1\|4464185_4465034_+\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	unknown	unknown	gnl\|CDD\|273208
CP035540.1\|QBA62330.1\|4445404_4446100_+\|L-ribulose-5-phosphate-4-epimerase	unknown	unknown	gnl\|CDD\|236181
CP035540.1\|QBA62338.1\|4457227_4458055_-\|DnaJ-like-protein-DjlA	unknown	unknown	gnl\|CDD\|236512
CP035540.1\|QBA62335.1\|4453192_4454557_-\|Citrate/malate-transporter	unknown	unknown	gnl\|CDD\|377030
CP035540.1\|QBA62339.1\|4458298_4460647_+\|LPS-assembly-protein-LptD-precursor	unknown	unknown	gnl\|CDD\|235158
CP035540.1\|QBA62345.1\|4465289_4465769_-\|Dihydrofolate-reductase	unknown	unknown	gnl\|CDD\|182714
CP035540.1\|QBA62341.1\|4461993_4462983_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-1	unknown	unknown	gnl\|CDD\|234696
CP035540.1\|QBA62336.1\|4454881_4456507_+\|Sensor-histidine-kinase-CitA	unknown	unknown	gnl\|CDD\|225827
CP035540.1\|QBA62327.1\|4440861_4441707_-\|Arabinose-operon-regulatory-protein	unknown	unknown	gnl\|CDD\|236717
CP035540.1\|QBA62343.1\|4463803_4464181_+\|CO2+/MG2+-efflux-protein-ApaG	unknown	unknown	gnl\|CDD\|180098
CP035540.1\|QBA62334.1\|4452473_4453013_-\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	unknown	unknown	gnl\|CDD\|163145
CP035540.1\|QBA62332.1\|4448820_4451727_+\|RNA-polymerase-associated-protein-RapA	unknown	unknown	gnl\|CDD\|235319
CP035540.1\|QBA62326.1\|4439965_4440733_-\|Inner-membrane-protein-YabI	unknown	unknown	gnl\|CDD\|223659
CP035540.1\|QBA62328.1\|4442044_4443754_+\|Ribulokinase	unknown	unknown	gnl\|CDD\|235221
CP035540.1\|QBA62342.1\|4462979_4463801_+\|16S-ribosomal-RNA-methyltransferase-KsgA/Dim1-family-protein	unknown	unknown	gnl\|CDD\|234708
CP035540.1\|QBA62337.1\|4456496_4457195_+\|Transcriptional-regulatory-protein-CitB	unknown	unknown	gnl\|CDD\|226931

Protein	Function_ID	Function_description	E-value
CP035540.1\|QBA62340.1\|4460701_4461988_+\|Chaperone-SurA-precursor	gnl\|CDD\|236758	PRK10770, PRK10770, peptidyl-prolyl cis-trans isomerase SurA; Provisional.	0
CP035540.1\|QBA62329.1\|4443764_4445267_+\|L-arabinose-isomerase	gnl\|CDD\|179503	PRK02929, PRK02929, L-arabinose isomerase; Provisional.	0
CP035540.1\|QBA62331.1\|4446275_4448633_+\|DNA-polymerase-II	gnl\|CDD\|235595	PRK05762, PRK05762, DNA polymerase II; Reviewed.	0
CP035540.1\|QBA62333.1\|4451739_4452399_+\|Ribosomal-large-subunit-pseudouridine-synthase-A	gnl\|CDD\|236659	PRK10158, PRK10158, bifunctional tRNA pseudouridine(32) synthase/23S rRNA pseudouridine(746) synthase RluA.	2.4454e-161
CP035540.1\|QBA62344.1\|4464185_4465034_+\|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical	gnl\|CDD\|273208	TIGR00668, Bis5'-nucleosyl-tetraphosphatase_symmetrical, bis(5'-nucleosyl)-tetraphosphatase (symmetrical). Diadenosine 5',5"'-P1,P4-tetraphosphate (Ap4A) is a regulatory metabolite of stress conditions. It is hydrolyzed to two ADP by this enzyme. Alternate names include diadenosine-tetraphosphatase and Ap4A hydrolase. [Cellular processes, Adaptations to atypical conditions].	0
CP035540.1\|QBA62330.1\|4445404_4446100_+\|L-ribulose-5-phosphate-4-epimerase	gnl\|CDD\|236181	PRK08193, araD, L-ribulose-5-phosphate 4-epimerase AraD.	0
CP035540.1\|QBA62338.1\|4457227_4458055_-\|DnaJ-like-protein-DjlA	gnl\|CDD\|236512	PRK09430, djlA, co-chaperone DjlA.	2.63694e-164
CP035540.1\|QBA62335.1\|4453192_4454557_-\|Citrate/malate-transporter	gnl\|CDD\|377030	pfam03390, 2HCT, 2-hydroxycarboxylate transporter family. The 2-hydroxycarboxylate transporter family is a family of secondary transporters found exclusively in the bacterial kingdom. They function in the metabolism of the di- and tricarboxylates malate and citrate, mostly in fermentative pathways involving decarboxylation of malate or oxaloacetate.	4.87969e-169
CP035540.1\|QBA62339.1\|4458298_4460647_+\|LPS-assembly-protein-LptD-precursor	gnl\|CDD\|235158	PRK03761, PRK03761, LPS assembly outer membrane complex protein LptD; Provisional.	0
CP035540.1\|QBA62345.1\|4465289_4465769_-\|Dihydrofolate-reductase	gnl\|CDD\|182714	PRK10769, folA, type 3 dihydrofolate reductase.	1.71656e-127
CP035540.1\|QBA62341.1\|4461993_4462983_+\|4-hydroxythreonine-4-phosphate-dehydrogenase-1	gnl\|CDD\|234696	PRK00232, pdxA, 4-hydroxythreonine-4-phosphate dehydrogenase; Reviewed.	0
CP035540.1\|QBA62336.1\|4454881_4456507_+\|Sensor-histidine-kinase-CitA	gnl\|CDD\|225827	COG3290, CitA, Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms].	6.55037e-173
CP035540.1\|QBA62327.1\|4440861_4441707_-\|Arabinose-operon-regulatory-protein	gnl\|CDD\|236717	PRK10572, PRK10572, arabinose operon transcriptional regulator AraC.	0
CP035540.1\|QBA62343.1\|4463803_4464181_+\|CO2+/MG2+-efflux-protein-ApaG	gnl\|CDD\|180098	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed.	7.84855e-74
CP035540.1\|QBA62334.1\|4452473_4453013_-\|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase	gnl\|CDD\|163145	TIGR03124, citrate_citX, holo-ACP synthase CitX. Members of this protein family are the CitX protein, or CitX domain of the CitXG bifunctional protein, of the citrate lyase system. CitX transfers the prosthetic group 2'-(5''-triphosphoribosyl)-3'-dephospho-CoA to the citrate lyase gamma chain, an acyl carrier protein. This enzyme may be designated holo-ACP synthase, holo-citrate lyase synthase, or apo-citrate lyase phosphoribosyl-dephospho-CoA transferase. In a few genera, including Haemophilus, this protein occurs as a fusion protein with CitG (2.7.8.25), an enzyme involved in prosthetic group biosynthesis. This CitX family is easily separated from the holo-ACP synthases of other enzyme systems. [Energy metabolism, Fermentation, Protein fate, Protein modification and repair].	5.54697e-86
CP035540.1\|QBA62332.1\|4448820_4451727_+\|RNA-polymerase-associated-protein-RapA	gnl\|CDD\|235319	PRK04914, PRK04914, RNA polymerase-associated protein RapA.	0
CP035540.1\|QBA62326.1\|4439965_4440733_-\|Inner-membrane-protein-YabI	gnl\|CDD\|223659	COG0586, DedA, Uncharacterized membrane-associated protein [Function unknown].	1.35562e-48
CP035540.1\|QBA62328.1\|4442044_4443754_+\|Ribulokinase	gnl\|CDD\|235221	PRK04123, PRK04123, ribulokinase; Provisional.	0
CP035540.1\|QBA62342.1\|4462979_4463801_+\|16S-ribosomal-RNA-methyltransferase-KsgA/Dim1-family-protein	gnl\|CDD\|234708	PRK00274, ksgA, 16S rRNA (adenine(1518)-N(6)/adenine(1519)-N(6))-dimethyltransferase RsmA.	3.65731e-147
CP035540.1\|QBA62337.1\|4456496_4457195_+\|Transcriptional-regulatory-protein-CitB	gnl\|CDD\|226931	COG4565, CitB, Response regulator of citrate/malate metabolism [Transcription / Signal transduction mechanisms].	5.03078e-66

>CP035540.1|QBA62335.1|4453192_4454557_-|Citrate/malate-transporter
MSTTDNAFSATLEPIDTPKTTLKQRWWHIMDNWKVGIVPLPLFLLAGGLIALDCLGGKLPSDIVVMVATLAFFGFACGEFGKRLPVLGKLGAAAICATFIPSALVHYGLLPDVVIESTTKFYKSTNILYLYICCIIVGSIMSMNRTTLIQGFLKIFFPMLCGEVVGMLVGIGVGTLLGMEPFQVFFFIVLPIMAGGVGEGAIPLSMGYAALMHMEQGVALGRVLPMVMLGSLTAIVISGCLNQLGKRFPHLTGEGQLMPNRSHETRSLSESEGVSGKTDVGTLASGALLAVLLYMMGMLGHKLIGLPAPVGMLFLAVLLKLANVVSPRLQEGSQMVYKFFRTAVTYPILFAVGVAITPWQELVNAFTLTNLLVIVSTVSALVATGFLVGKKIGMHPIDVAIVSCCQSGQGGTGDVAILTAGNRMSLMPFAQIATRIGGAINVSLGLLFLSHYLA
>CP035540.1|QBA62334.1|4452473_4453013_-|Apo-citrate-lyase-phosphoribosyl-dephospho-CoA-transferase
MSVDTPAQAGVSIDALLAAKEQRAARQADWLAHYQQPVISLTLVTPGAVKDSIRYRNMMGVALQACDQLLWKHRWQTLDRQVLWLPTGPEALWCVAHPASEIKAMCSTLEQSHPLGRLWDIDVICPQNGLVGRQSLGESQRRCLLCDEPAHACARSRRHDTDLVVARVEQMIDAWFARD
>CP035540.1|QBA62333.1|4451739_4452399_+|Ribosomal-large-subunit-pseudouridine-synthase-A
MAMENYNPPQDPWLVILYQDEHIMVVNKPSGLLSVPGRLEEHKDSVMTRIQRDFPQAESVHRLDMATSGVIVVALNKAAERELKRQFREREPKKQYVARVWGHPQPAEGLVDLPLICDWPNRPKQKVCYETGKAAQTEYEVLEYAEDNTARVRLKPITGRSHQLRVHMLALGHPILGDRFYATPEALAMAPRLLLHAETLTITHPAYGNAMTFRAPIDF
>CP035540.1|QBA62332.1|4448820_4451727_+|RNA-polymerase-associated-protein-RapA
MPFTLGQRWISDTESELGLGTVVALDARMVTLLFPAIGENRLYSRNDSPITRVMFNPGDTITSHEGWQLHVDKVNEENGLLSYTGTRLDTQEANVTLREVLLDSKLVFSKPQDRLFAGQIDRMDRFALRYRARKFQSEQYRMPWSGLRGQRTSLIPHQLHIAHDVGRRHAPRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIVVPETLQHQWLVEMLRRFNLRFSLFDDERYAEAQHDAYNPFETEQLVICSLDFVRRSKQRLEHLCDAEWDLMVVDEAHHLVWSEEAPSREYQAIEQLAERVPGILLLTATPEQLGMESHFARLRLLDPNRFHDFEQFVEEQQNYRPVADAVALLLAGNKLSDSELNTLGDLIGEQDIEPLLQAANSDREDAQAARQELISMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIRLPLPTQYQTAIKVSGIMGARKTAEERARDMLYPEQIYQEFEGDTGTWWNFDPRVEWLMGYLTSHRSQKVLVICAKAATALQLEQVLREREGIRAAVFHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASNLVMFDLPFNPDLLEQRIGRLDRIGQAHDIQIHVPYLEKTAQSVLVRWYHEGLDAFEHTCPTGRTVYDSVHDELINYLAAPESIDGFDDLIKSCRQQHDALKAQLEQGRDRLLEIHSNGGEKAQALAESIEEQDDDTSLIAFSMNLFDIVGINQDDRGENLIVLTPSDHMLVPDFPGLPEDGCTITFERDVALSREDAQFITWEHPLIRNGLDLILSGDTGSSTISLLKNKALPVGTLLLELIYVVEAQAPKQLQLNRFLPATPVRMLLDKNGNNLAAQVEFESFNRQLSAVNRHTGSKLVNAVQQDVHAILQQGEAQIAKAAQGLIDAARNEADEKLTAELSRLEALKAVNPNIRDDELAGIESNRQQVMDALAQAGWRLDALRLIVVTHQ
>CP035540.1|QBA62331.1|4446275_4448633_+|DNA-polymerase-II
MTQPRAGFLLTRHWRDTPQGTELSFWLATDDGPLQVTLPPQESVAFIPEAQRAQAERLLQGEKGLRFAPLALKDFHRQPIVGLYCRAHRQLMRLEKMLRDSGVTVYEGDIRPPERYLMERFITAPVWVEGETRGSQLVNARMKPNPDYRPPLKWVSLDIETSRHGELYCIGLEGCGQRVVYMLGPEPETPPDVDFELVFIASRPLLLEKLNAWFAEHDPDVLIGWNVVQFDLRVLQKHAERYRIPLRLGRGNSELEWREHGFKNGVFFAQANGRLIIDGIDALKSAFWNFSSFSLEAVARELLGEGKAIDNPWDRMDEIDRRFHEDKPALAIYNLQDCELVTRIFHKTEIMPFLLERATVNGLPADRHGGSVAAFSHLYFPRMHRLGYVAPNLGDVPPQASPGGYVMDSRPGLYDSVLVLDYKSLYPSIIRTFLIDPVGLIEGLAQPDDQHSIEGFLGARFSRDKHCLPGIVSQIWHGRDEAKRQHNKPLSQALKIIMNAFYGVLGTSACRFFDPRLASSITMRGHAIMRQTKALIEAKGYDVIYGDTDSTFVWLKRPHSEAQAAEIGRELVSHVNAWWAQELSKSQLTSALELEYETHFCRFLMPTIRGADTGSKKRYAGMIQEGDAQRMVFKGLETVRTDWTPLAQQFQQELYLRIFRNQPYQDYVRETIARLMNGELDEQLVYRKRLRRPLAEYQRNVPPHVRAARLADEHNLKLGRAQQYQQRGTIKYVWTTSGPEPVDYQQSPLDYDHYLTKQLQPVAEGILPFVNDDFATIVTGQLGLF
>CP035540.1|QBA62330.1|4445404_4446100_+|L-ribulose-5-phosphate-4-epimerase
MLEDLKRQVLEANLALPKHNLVTLTWGNVSAVDREKGVFVIKPSGVDYRVMTADDMVVVSLESGEVVEGNKKPSSDTPTHRLLYQAFPTLGGIVHTHSRHATIWAQAGQSIPATGTTHADYFYGPVPCTRLMTDAEINGDYEWETGNVIVETFRQQGIDPAQMPGVLVHSHGPFAWGKNAEDAVHNAIVLEEIAYMGIFCRQLAPQLPAMQQTLLDKHYLRKHGAKAYYGQ
>CP035540.1|QBA62329.1|4443764_4445267_+|L-arabinose-isomerase
MTIFDNYEVWFVIGSQHLYGPEALRQVTKHAEHVVNSLNAEAKLPCKLVLKPLGTTPDEITHICRDANYDDKCAGLVVWLHTFSPAKMWINGLTILNKPLLQFHTQYNAALPWDSIDMDFMNLNQTAHGGREFGFIGARMRQQHSVVTGHWQDKEAHQRIGGWMRQAVSKQDTRHLKVCRFGDNMREVAVTDGDKVAAQIKFGFSVNTWAVGDLVQVVNSISDGDISALVDEYESSYRLTPAAQVHGEKRQNVLDAARIELGMKRFLEQGGFHAFTTTFEDLHGLKQLPGLAVQRLMQQGYGFAGEGDWKTAALLRIMKVMSTGLQGGTSFMEDYTYHFDNGNDLVLGSHMLEVCPTIATVEKPILDVQPLGIGGKADPARLIFNTQTGPAIVASLIDLGDRFRLLVNTIETVPTPHDLPKLPVANALWKAQPDLRTASEAWIIAGGAHHTVFSHALNLDDMRQFAELHDIELTVIDNDTRLPSFKDALRWNEVYYGSKR
>CP035540.1|QBA62328.1|4442044_4443754_+|Ribulokinase
MAIAIGLDFGSDSVRALAVECASGAELATSVEWYPRWREGQYCDGANNRFRHHPRDYIESMEAALKSVLASLSAEQRADVVGIGVDSTGSTPAPVDAEGNVLALREEFADNPNAMFVLWKDHTAVEEAEAITRLCHQPGKEDYSRYIGGIYSSEWFWAKILHVTREDSAVAQAAASWVELCDWVPALLSGTTRPQDLRRGRCSAGHKSLWHESWGGLPPASFFDELDPIINQHLAWPLFTDTWTADVPVGTLSAEWAQRLGLSQSVAISGGAFDCHMGAVGAGAQPNALVKVIGTSTCDILIADKESVGERTVKGICGQVDGSVVPHFIGMEAGQSAFGDIYAWFGRILGWPLEQLAQQQPALREQIKASQKQLLPALTEAWANNPSLEHLPVVLDWFNGRRTPNANQRLKGVITDLNLATDAPALFGGLIAATAFGARAIMECFTEQGIPVNNVMALGGIARKNQVIMQACCDVLNRPLQIVASDQCCALGAAIFAAVAAGVYDDIPAAQQRMASQVETTLQPRPAQAQRFEQLYQRYQQWSVSAEQHYLPSAAKAEKAPQSKAALTH
>CP035540.1|QBA62327.1|4440861_4441707_-|Arabinose-operon-regulatory-protein
MAETQNDPLLPGYSFNAHLVTGLTPIEAQGYLDFFIDRPLGMKGYILNLTIRGEGVINNHGEQFVCRPGDMLLFPPGEIHHYGRHPDASEWYHQWVYFRPRAYWHEWLNWPTIFAQTGFFRPDEQWQARFGELFGQIVDAGQGAGRYSELLAINLLEQLLLRRMEAINESLHPPLDNRVREACQYISDHLADSHFDIASVAQHVCLSPSRLSHLFRQQLGVSVLGWREDQRISQAKLLLSTTRMPIATVGRNVGFEDQLYFSRVFKKCTGASPSEFRAGCE
>CP035540.1|QBA62326.1|4439965_4440733_-|Inner-membrane-protein-YabI
MQALLEHFITQSTVYSLLAVMLVAFLESLALVGLILPGTVMMAGLGALIGGGEVNFWQAWLAGIVGCLLGDWISFWLGWRFKKPLHRWSFMKKNRALLEKTEHALHQHSMITILIGRFVGPTRPLVPMVAGMLDLPVAKFVLPNIIGCLLWPPLYFLPGILAGAAIDIPADENSASFKWLLLGAALLAWLAGWLCWRLWRSAKTSGDRLTRWLPRGRLLWLSPLMVALAATALTFVFRHPLMPVYLAILHKVIAR
>CP035540.1|QBA62336.1|4454881_4456507_+|Sensor-histidine-kinase-CitA
MKLSFQYKLFISLVAFFSVLFIALGIYYYFDASRQLYQEMSARAKIQAEEIALMPNLRQQVSRHDPQAIQAFMQQIAAHSDASFIVIGDRQGVHLFHSVHPEWVGTRLVGGDNQAVLEGKSITTIRKGGLGVSLRSKTPIVDDAGRVIGIVSVGYLTSYLDSITLTKVINIFIAAVLLLIALFIFSWYFTRSIKKQIFSLEPREIGLLVRQQKAMMESIFEGVIVIDRQRRIEVINHAARSLLGLSQPARQLRGQSIDSVISPQPFFASGDMLERDTHDELCRFNQLTVLASRVRIMLENTLQGWVITFRDRNEINALTAQLSQVKRYVDNLRIMRHEQLNRMTTLSGLLHMGHYDEAIRYIQAQSEHAQELLDFISSHFHSPTLCGLLLGKATRAREKGVALSFDPACRIDRPLPSLMESELISIIGNLLDNAIEATQRAELPHEPVEVLIQLNARELIIEVADRGVGIRPDIRERIFERGVTTKTRGDHGIGLYLIEHYVTQAGGTIEVADNAPRGTIFTLFIPADAHACPQPEAHDAS
>CP035540.1|QBA62337.1|4456496_4457195_+|Transcriptional-regulatory-protein-CitB
MHHDLVDVLIIEDESELARLHAELVQKHPRLRLAGMAASLAQARQLLHATPPQLVLLDNYLPDGKGVTLMTDPALATSQCSVIFITAASDMETCSQAIRNGAFDYILKPVSWKRLSQSLERFIQFYDQQREWKIVDQQNVDSLYQLQAKNYRVDSGSKGIEEKTLALVQGLFSDREAHCFSVDEVVSAAGLSKTTARRYLEHGVETGFLEVEMLYGKIGHPRRLYRRAKVKS
>CP035540.1|QBA62338.1|4457227_4458055_-|DnaJ-like-protein-DjlA
MQYLGKVIGVAVALLMGGGFWGVVLGFLVGHMFDRARSRRLNLFANQQERQSLFFSTTFEVMGHLTKSKGRVTEADIHVANVLMDRMNLHGASRTAAQQAFRDGKADNYPLREKMRQLRSVCFGRFDLIRMFLEIQLQAAFADGELHPNEREVLFVIADELGISRAQFDQFLRMMQGGAQFGGGSQQRSYGQHGGNAGWQQAQRGPTLEDACNVLGVKPTDDAATVKRAYRKLMNEHHPDKLVAKGLPPEMMEMAKQKAQEIQKAWELIKEQRGF
>CP035540.1|QBA62339.1|4458298_4460647_+|LPS-assembly-protein-LptD-precursor
MKKRIPSLLATMIASALYSQQGLAADLATQCMLGVPSYDRPLVEGRPGDLPVTINADHAKGNYPDNAVFTGNVDINQGNSRLRADEVQLHQQQAAGQAQPVRTVDALGNVHYDDNQVILKGPKAWSNLNTKDTNVWQGDYQMVGRQGRGTADLMKQRGENRYTILENGSFTSCLPGSDTWSVVGSEVIHDREEQVAEIWNARFKLGSVPIFYSPYLQLPVGDKRRSGFLIPNAKYSTKNGVEFSLPYYWNIAPNFDATITPHYMNKRGGVMWENEFRYLTQLGSGLTEFDYLPSDKVYEDDHSSDSNSRRWLFYWNHSGVIDQVWRLNADYTKVSDPDYFNDFSSKYGSSTDGYATQKFSAGYVNQNFDATVSTKQFQVFDRESSNSYSAEPQLDVNYYQNDVGPFDTHLYGQVAHFVNSNNNMPEATRVHFEPTINLPLSNGWGSLNTEAKLLATHYQQSNLDKYNAANGTDYKESVSRVMPQFKVDGKMVFERDLQEGFTQTLEPRVQYLYVPYRDQSEIGNYDSTLLQSDYTGLFRDRTYSGLDRIASANQVTTGLTSRVYDAAAVERFNISVGQIYYFTESRTGDDNINWENNDTTGSLVWAGDTYWRIADEWGLRGGIQYDTRLDNVATGNGTIEYRRDENRLVQLNYRYASPEYIQATLPSYSTAAQYKQGISQVGMTASWPIVDRWSVVGAYYYDTNTRKAANQMLGVQYNSCCYAIRLGYERKVNGWNSNDNGGESKYDNTFGINIELRGLSSNYGLGTQQMLRSNILPYQSSL
>CP035540.1|QBA62340.1|4460701_4461988_+|Chaperone-SurA-precursor
MKNWKTLLLGIAMIANTSFAAPQVVDKVAAVVNNGVVLESDVDGLMQSVKLNAGQAGQQLPDDATLRHQILERLIMDQIVLQMGQKMGVKISDDQLDQAIANIAKQNNMTLDQMRSRLAYEGINYNTYRNQIRKEMLISEVRNNEVRRRITVLPQEVEALAKQIGDQNDASTELNLSHILIPLPENPTSDEVAAAQEQANSIVEQARNGANFGKLAITYSADQQALKGGQMGWGRIQELPGIFAQALSTAKKGDIVGPIRSGVGFHILKVNDLRGGTQNISVTEVHARHILLKPSPIMNDAQAQAKLEQIAAEIKSGKITFAQAAKTYSEDPGSANQGGDLGWATPDIFDPAFRDALMRLNKGQTSGPVHSSFGWHLIELLDSRQVDRTDAAQKDRAYRMLMNRKFSEEAATWMQEQRASAYVKILSN
>CP035540.1|QBA62341.1|4461993_4462983_+|4-hydroxythreonine-4-phosphate-dehydrogenase-1
MPETRKVVITPGEPAGIGPDLVVQLAQRDWPVELVICADGALLTDRAKRLGLPLSLLPYDPAQPPVPQRAGTLTLLNVPLNVPAEPGVLNVQNGAYVVETLARACDGCLSGEFAALVTGPVHKGNINDAGIAFTGHTEFFEERAKASKVVMMLATEELRVALVTTHLPLKAISEAITPELLREIITILDHDLRTKFGIAQPHVLVCGLNPHAGEGGHMGTEEIDTIIPVLEEMRAKGMNLSGPLPADTLFQPKYLDHADAVLAMYHDQGLPVLKYQGFGRGVNITLGLPFIRTSVDHGTALELAGQGKADVGSFITALNLAIKMIVNTQ
>CP035540.1|QBA62342.1|4462979_4463801_+|16S-ribosomal-RNA-methyltransferase-KsgA/Dim1-family-protein
MNNRVHQGHLARKRFGQNFLNDQFVIDSIVSAINPQKGQAMVEIGPGLAALTEPVGERLDQLTVIELDRDLAARLQTHPFLGPKLTIYQQDAMTMNFGELAEKMGQPLRVFGNLPYNISTPLMFHLFSYTDAIADMHFMLQKEVVNRLVAGPNSKAYGRLSVMAQYYCQVIPVLEVPPSAFTPPPKVDSAVVRLVPHSTMPYPVKEIRVLSRITTEAFNQRRKTIRNSLGNLFSVEVLTELGIDPAMRAENISVAQYCLMANWLSDNLPTKES
>CP035540.1|QBA62343.1|4463803_4464181_+|CO2+/MG2+-efflux-protein-ApaG
MIHSPRVCVQVQSVYIESQSSPEEERYVFAYTVTIRNLGRSQVQLLGRYWLITNGHGRETEVQGEGVVGEQPHIPAGGEYQYTSGAVIETPLGTMQGHYEMIDIDGAPFRIEIPVFRLAVPTLIH
>CP035540.1|QBA62344.1|4464185_4465034_+|Bis(5'-nucleosyl)-tetraphosphatase,-symmetrical
MSTYLIGDVHGCYDELIALLAQVEFDPRRDTLWLTGDLVARGPGSLEVLRYVKSLGDSVRLVLGNHDLHLLAVFAGISRNKPKDRLKPLLEAPDADELLNWLRRQPLLQVDEEKKLVMAHAGITPQWDLETAQQCARDVEAVLSSDSYPFFLDAMYGDMPNHWSNELSGLARLRFISNAFTRMRYCFPNGQLDMYSKEAPEDAPAPLKPWFAIPGPVSNAYSIAFGHWASLEGRGTPEGIYALDTGCCWGGELTCLRWEDKQYFTQPSNRQKSLDEGEAVAS
>CP035540.1|QBA62345.1|4465289_4465769_-|Dihydrofolate-reductase
MISLIAALAVDRVIGMENAMPWNLPADLAWFKRNTLNKPVVMGRLTWESIGRPLPGRKNIVISSKPGSDDRVQWVSSVEEAIAACGDVEEIMVIGGGRVYEQFLPKAQKLYLTHIDAEVEGDTHFPDYDPDEWESVFSEFHDADAQNSHSYCFEILERR

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Identity
CP035540_1	1.1\|3970704\|36\|CP035540\|CRISPRCasFinder	3970704-3970739	36	MK448233	Klebsiella phage ST11-VIM1phi8.1, complete genome	8447-8482	1.0
CP035540_1	1.1\|3970704\|36\|CP035540\|CRISPRCasFinder	3970704-3970739	36	MK448235	Klebsiella phage ST512-KPC3phi13.1, complete genome	8447-8482	1.0
CP035540_1	1.1\|3970704\|36\|CP035540\|CRISPRCasFinder	3970704-3970739	36	MK448231	Klebsiella phage ST101-KPC2phi6.1, complete genome	11383-11418	1.0

1. spacer 1.1|3970704|36|CP035540|CRISPRCasFinder matches to MK448233 (Klebsiella phage ST11-VIM1phi8.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

2. spacer 1.1|3970704|36|CP035540|CRISPRCasFinder matches to MK448235 (Klebsiella phage ST512-KPC3phi13.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

3. spacer 1.1|3970704|36|CP035540|CRISPRCasFinder matches to MK448231 (Klebsiella phage ST101-KPC2phi6.1, complete genome) position: , mismatch: 0, identity: 1.0

cctcgccggtacgcagcgtggttactgggtttgcgt	CRISPR spacer
cctcgccggtacgcagcgtggttactgggtttgcgt	Protospacer
************************************

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

445190 : 478448

uncultured_Caudovirales_phage(75.0%)

head,terminase,capsid,portal,protease,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA58553.1\|445190_446138_-\|tRNA	Methionyl-tRNA formyltransferase	E3SNR5	Prochlorococcus_phage	2.2e-07	37.2
QBA58554.1\|446152_446662_-	Peptide deformylase	E3SLL2	Synechococcus_phage	2.6e-18	40.3
QBA58555.1\|446790_447915_+	hypothetical protein	NA	NA	NA	NA
QBA58556.1\|447886_448360_+	hypothetical protein	NA	NA	NA	NA
QBA58557.1\|448385_448928_+	DNA topoisomerase 1	NA	NA	NA	NA
QBA58558.1\|448932_449505_+	Threonylcarbamoyl-AMP synthase	NA	NA	NA	NA
QBA58559.1\|449508_450327_+	Shikimate dehydrogenase	NA	NA	NA	NA
QBA58560.1\|450323_450581_+	hypothetical protein	NA	NA	NA	NA
QBA58561.1\|450556_451111_-	UDP-3-O-[3-hydroxymyristoyl] glucosamine N-acyltransferase	NA	NA	NA	NA
QBA58562.1\|456906_457128_-	hypothetical protein	NA	NA	NA	NA
QBA58563.1\|457421_460532_-	multidrug efflux system protein AcrF	NA	NA	NA	NA
QBA58564.1\|460544_461684_-	multidrug efflux system protein AcrE	NA	NA	NA	NA
QBA58565.1\|462062_462713_+	putative acrEF/envCD operon repressor	NA	NA	NA	NA
QBA58566.1\|462988_464215_+	Integrase	A0A2H4JB45	uncultured_Caudovirales_phage	1.8e-150	62.2
QBA58567.1\|464307_465249_+	hypothetical protein	NA	NA	NA	NA
QBA58568.1\|465430_465715_+	Prophage CP4-57 regulatory protein (AlpA)	NA	NA	NA	NA
QBA58569.1\|465725_466505_+	Phage antirepressor protein KilAC domain protein	Q8HA02	Enterobacteria_phage	6.2e-40	51.5
QBA58570.1\|466628_466823_-	hypothetical protein	NA	NA	NA	NA
QBA58571.1\|466956_467226_+	hypothetical protein	A0A2H4JGW3	uncultured_Caudovirales_phage	2.4e-44	94.4
QBA58572.1\|467218_467407_+	hypothetical protein	NA	NA	NA	NA
QBA58573.1\|467399_467714_+	hypothetical protein	NA	NA	NA	NA
QBA58574.1\|467710_468079_+	hypothetical protein	A0A2H4JCX7	uncultured_Caudovirales_phage	3.7e-51	81.1
QBA58575.1\|468075_468441_+	hypothetical protein	NA	NA	NA	NA
QBA58576.1\|468440_470576_+	hypothetical protein	A0A1W6JPG0	Morganella_phage	3.4e-205	62.4
QBA58577.1\|470918_471254_+	hypothetical protein	NA	NA	NA	NA
QBA58578.1\|471302_471815_-	hypothetical protein	NA	NA	NA	NA
QBA58579.1\|472078_473245_+\|capsid	major virion capsid protein	A0A2H4JED2	uncultured_Caudovirales_phage	9.8e-207	95.9
QBA58580.1\|473296_473857_+\|head,protease	Caudovirus prohead protease	A0A2H4JB68	uncultured_Caudovirales_phage	1.2e-98	95.7
QBA58581.1\|473858_475100_+\|portal	virion portal protein	A0A2H4JFJ9	uncultured_Caudovirales_phage	1.0e-230	96.5
QBA58582.1\|475096_475432_+\|head	virion head closure protein, neck type 1	A0A2H4JHK5	uncultured_Caudovirales_phage	3.7e-26	57.8
QBA58583.1\|475428_475728_+	virion neck adaptor, type 1	A0A2H4JD08	uncultured_Caudovirales_phage	3.4e-39	80.8
QBA58584.1\|475727_476171_+	HNH endonuclease	A0A2H4JAS8	uncultured_Caudovirales_phage	2.8e-77	91.8
QBA58585.1\|476163_476316_+	hypothetical protein	A0A2H4JCY9	uncultured_Caudovirales_phage	2.4e-17	88.0
QBA58586.1\|476297_476489_+	hypothetical protein	NA	NA	NA	NA
QBA58587.1\|476446_476803_+\|terminase	terminase DNA loader, small subunit	A0A2H4JHS3	uncultured_Caudovirales_phage	5.5e-60	99.2
QBA58588.1\|476786_478448_+\|terminase	terminase DNA loader, large subunit	A0A2H4JB64	uncultured_Caudovirales_phage	0.0e+00	98.0

DBSCAN-SWA_2

2686703 : 2697590

Escherichia_phage(87.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA60673.1\|2686703_2689811_+	Beta-galactosidase	L0N6M2	Herpes_simplex_virus	0.0e+00	59.6
QBA60674.1\|2689865_2691131_+	Lactose permease	NA	NA	NA	NA
QBA60675.1\|2691161_2692250_-	recombination protein F	A0A077SLJ9	Escherichia_phage	8.0e-211	100.0
QBA60676.1\|2692336_2692597_-	hypothetical protein	A0A077SK33	Escherichia_phage	3.5e-40	97.7
QBA60677.1\|2692894_2693755_+	Ambler Class A beta lactamase SHV-11	A0A077SL40	Escherichia_phage	2.2e-155	99.3
QBA60678.1\|2693775_2694537_-	Glycerol-3-phosphate regulon repressor	A0A077SK06	Escherichia_phage	1.9e-134	100.0
QBA60679.1\|2694797_2695700_+	2-(hydroxymethyl)glutarate dehydrogenase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
QBA60680.1\|2695711_2696977_+	hypothetical protein	A0A077SLJ7	Escherichia_phage	6.6e-233	99.5
QBA60681.1\|2696969_2697590_+	L-fuculose phosphate aldolase	A0A077SK32	Escherichia_phage	8.0e-115	100.0

DBSCAN-SWA_3

2906348 : 2966542

uncultured_Caudovirales_phage(30.77%)

head,terminase,capsid,portal,protease,plate,transposase,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA60876.1\|2906348_2908727_-\|plate	Phage-related baseplate assembly protein	A0A2H4JCD4	uncultured_Caudovirales_phage	9.2e-18	33.8
QBA60877.1\|2908719_2911374_-	Chaperone protein ClpB	K4FB40	Cronobacter_phage	2.5e-96	33.4
QBA60878.1\|2911638_2912130_-	Major exported protein	NA	NA	NA	NA
QBA60879.1\|2912134_2913841_-	Outer membrane porin F precursor	NA	NA	NA	NA
QBA60880.1\|2913837_2914527_-	hypothetical protein	NA	NA	NA	NA
QBA60881.1\|2914523_2915867_-	hypothetical protein	NA	NA	NA	NA
QBA60882.1\|2915876_2917421_-	hypothetical protein	NA	NA	NA	NA
QBA60883.1\|2917463_2917955_-	hypothetical protein	NA	NA	NA	NA
QBA60884.1\|2918800_2919049_+	DNA-damage-inducible protein I	S5MQI1	Escherichia_phage	1.4e-25	70.4
QBA60885.1\|2919271_2919556_-	hypothetical protein	NA	NA	NA	NA
QBA60886.1\|2919633_2921121_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
QBA60887.1\|2921570_2921780_-	hypothetical protein	NA	NA	NA	NA
QBA60888.1\|2921776_2922508_-	hypothetical protein	NA	NA	NA	NA
QBA60889.1\|2922518_2925542_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	1.6e-22	44.7
QBA60890.1\|2925597_2925795_-	hypothetical protein	NA	NA	NA	NA
QBA60891.1\|2925794_2926661_-	hypothetical protein	A0A2H4IYR0	uncultured_Caudovirales_phage	1.9e-34	64.5
QBA60892.1\|2926660_2927434_-	hypothetical protein	A0A2H4J1A9	uncultured_Caudovirales_phage	2.8e-77	54.4
QBA60893.1\|2927430_2928627_-	hypothetical protein	A0A0M4RD32	Salmonella_phage	3.9e-158	72.9
QBA60894.1\|2928626_2928980_-	hypothetical protein	A0A2H4J629	uncultured_Caudovirales_phage	2.3e-50	80.3
QBA60895.1\|2928981_2929635_-	hypothetical protein	A0A2H4J8H6	uncultured_Caudovirales_phage	1.0e-59	63.5
QBA60896.1\|2929688_2930255_-	hypothetical protein	NA	NA	NA	NA
QBA60897.1\|2930297_2930480_-	hypothetical protein	NA	NA	NA	NA
QBA60898.1\|2930869_2931892_-	hypothetical protein	A0A2H4J1B2	uncultured_Caudovirales_phage	9.2e-100	54.2
QBA60899.1\|2931894_2932197_-	hypothetical protein	A0A2H4J495	uncultured_Caudovirales_phage	2.0e-26	55.2
QBA60900.1\|2932197_2932797_-	hypothetical protein	A0A2H4J1B3	uncultured_Caudovirales_phage	9.9e-54	57.6
QBA60901.1\|2932796_2934800_-	Membrane-bound lytic murein transglycosylase D precursor	A0A2H4J9N7	uncultured_Caudovirales_phage	1.2e-247	63.6
QBA60902.1\|2934789_2934942_-	hypothetical protein	A0A2H4J1A2	uncultured_Caudovirales_phage	7.6e-19	88.0
QBA60903.1\|2934977_2935403_-	hypothetical protein	A0A2H4J2V6	uncultured_Caudovirales_phage	2.6e-40	63.4
QBA60904.1\|2935406_2935847_-	hypothetical protein	A0A0M5M1K6	Salmonella_phage	3.3e-62	80.1
QBA60905.1\|2935857_2937003_-\|tail	virion tail sheath protein	A0A2H4J8G4	uncultured_Caudovirales_phage	6.3e-166	76.9
QBA60906.1\|2937006_2937447_-\|tail	virion tail completion protein, type 1	A0A2H4J1A0	uncultured_Caudovirales_phage	1.6e-40	51.7
QBA60907.1\|2937541_2937928_-\|head	virion head closure protein, neck type 1	A0A2H4J1A4	uncultured_Caudovirales_phage	1.1e-48	78.2
QBA60908.1\|2937927_2938434_-	virion neck protein Ne1	NA	NA	NA	NA
QBA60909.1\|2938430_2938850_-	virion neck adaptor, type 1	A0A0M5M3S2	Salmonella_phage	3.3e-40	60.7
QBA60910.1\|2938818_2939100_-	hypothetical protein	NA	NA	NA	NA
QBA60911.1\|2939139_2940081_-\|capsid	major virion capsid protein	A0A2H4J191	uncultured_Caudovirales_phage	1.7e-137	77.1
QBA60912.1\|2940092_2940587_-	hypothetical protein	A0A2H4JHM9	uncultured_Caudovirales_phage	4.2e-50	62.7
QBA60913.1\|2940590_2941793_-	hypothetical protein	A0A0M4R5A6	Salmonella_phage	2.6e-106	54.1
QBA60914.1\|2941844_2942378_-	hypothetical protein	A0A0M4REK0	Salmonella_phage	2.9e-49	56.3
QBA60915.1\|2942448_2943900_-\|portal	virion portal protein	A0A0M4S6U1	Salmonella_phage	3.8e-192	68.8
QBA60916.1\|2944095_2945499_+\|transposase	ISKpn21 transposase	NA	NA	NA	NA
QBA60917.1\|2945527_2946160_-	hypothetical protein	NA	NA	NA	NA
QBA60918.1\|2946420_2947821_-\|terminase	terminase DNA loader, large subunit	A0A077KAW0	Edwardsiella_phage	9.4e-188	69.0
QBA60919.1\|2947771_2948524_-	hypothetical protein	A0A077KBY7	Edwardsiella_phage	4.0e-12	66.0
QBA60920.1\|2948625_2948946_-	hypothetical protein	NA	NA	NA	NA
QBA60921.1\|2949180_2949570_-	Putative bacteriophage protein	A0A192Y6H8	Salmonella_phage	9.4e-21	49.2
QBA60922.1\|2949566_2950097_-	Lysozyme RrrD	K7PLY1	Enterobacteria_phage	2.7e-79	77.1
QBA60923.1\|2950099_2950348_-	hypothetical protein	NA	NA	NA	NA
QBA60924.1\|2950753_2951536_-	Antitermination protein	F1C595	Cronobacter_phage	7.2e-113	76.8
QBA60925.1\|2951532_2952009_-	hypothetical protein	A0A286N2Q1	Klebsiella_phage	1.8e-90	100.0
QBA60926.1\|2952005_2952968_-	Zinc-binding domain of primase-helicase	A0A286N2Q0	Klebsiella_phage	4.8e-183	99.4
QBA60927.1\|2952969_2954628_-	reverse gyrase	A0A286N2P9	Klebsiella_phage	0.0e+00	96.0
QBA60928.1\|2954936_2955230_-	hypothetical protein	A0A286S2B5	Klebsiella_phage	2.8e-38	97.6
QBA60929.1\|2955204_2955426_-	helix-turn-helix protein	A0A286S2C1	Klebsiella_phage	3.0e-32	100.0
QBA60930.1\|2955523_2956192_+	putative HTH-type transcriptional regulator	A0A286S2B2	Klebsiella_phage	2.4e-125	99.5
QBA60931.1\|2956362_2956677_+	hypothetical protein	A0A286S1T9	Klebsiella_phage	1.0e-49	100.0
QBA60932.1\|2956669_2956858_+	hypothetical protein	A0A286S1P8	Klebsiella_phage	4.6e-26	100.0
QBA60933.1\|2957027_2957393_+	hypothetical protein	A0A286S1Q6	Klebsiella_phage	6.9e-58	99.2
QBA60934.1\|2957385_2957640_+	hypothetical protein	A0A286SGR4	Klebsiella_phage	3.1e-41	97.6
QBA60935.1\|2957826_2958252_+	hypothetical protein	A0A286S1S2	Klebsiella_phage	3.5e-53	77.9
QBA60936.1\|2958248_2958443_+	hypothetical protein	NA	NA	NA	NA
QBA60937.1\|2958439_2959267_+	SPFH domain / Band 7 family protein	Q8W654	Enterobacteria_phage	5.5e-111	84.0
QBA60938.1\|2959311_2959890_+	hypothetical protein	A0A286S1S7	Klebsiella_phage	2.8e-106	99.0
QBA60939.1\|2959898_2960606_+	Phage regulatory protein Rha (Phage_pRha)	A0A286S260	Klebsiella_phage	1.6e-111	88.3
QBA60940.1\|2960595_2960820_+	hypothetical protein	A0A286S2B3	Klebsiella_phage	3.1e-29	89.2
QBA60941.1\|2960816_2961029_+	hypothetical protein	A0A286S2B6	Klebsiella_phage	3.4e-33	98.6
QBA60942.1\|2961025_2961505_+	hypothetical protein	NA	NA	NA	NA
QBA60943.1\|2961577_2961724_+	hypothetical protein	A0A1B5FPC2	Escherichia_phage	2.9e-15	70.8
QBA60944.1\|2961734_2961926_+	hypothetical protein	A0A0M4RTZ2	Salmonella_phage	3.9e-20	73.8
QBA60945.1\|2961906_2962932_-	Integrase	A0A0M4QX09	Salmonella_phage	3.4e-171	83.6
QBA60946.1\|2963344_2963833_+\|protease	Putative cysteine protease YraA	NA	NA	NA	NA
QBA60947.1\|2964031_2965564_-	HD domain protein	A0A1B1ISR1	uncultured_Mediterranean_phage	1.1e-21	30.0
QBA60948.1\|2965780_2966542_-	3-oxoacyl-[acyl-carrier-protein] reductase FabG	Q06VL0	Trichoplusia_ni_ascovirus	2.4e-20	32.5

DBSCAN-SWA_4

2999475 : 3015624

Salmonella_phage(21.43%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA60980.1\|2999475_3000147_+	Putative SOS response-associated peptidase YedK	A0A2H4J5W2	uncultured_Caudovirales_phage	4.5e-79	59.6
QBA60981.1\|3000261_3001161_+	FRG domain protein	A0A1S6KZX9	Salmonella_phage	7.0e-19	30.2
QBA60982.1\|3001236_3002502_-	DNA polymerase IV	I6RSM4	Salmonella_phage	9.6e-208	82.7
QBA60983.1\|3002503_3003010_-	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	1.8e-35	57.5
QBA60984.1\|3003002_3004490_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
QBA60985.1\|3004912_3006400_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
QBA60986.1\|3008140_3008845_-\|transposase	IS26 transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QBA60987.1\|3009305_3009593_+	hypothetical protein	NA	NA	NA	NA
QBA60988.1\|3009594_3010275_+	exo YqaJ-like viral recombinase domain protein	A0A0M3ULE0	Salmonella_phage	8.2e-121	91.2
QBA60989.1\|3010271_3010700_+	hypothetical protein	M9NYX4	Enterobacteria_phage	7.5e-64	80.3
QBA60990.1\|3010696_3011359_+	adenine specific DNA methyltransferase	G8C7S6	Escherichia_phage	2.7e-105	84.6
QBA60991.1\|3011355_3011670_+	excisionase	K7PM28	Enterobacteria_phage	1.6e-10	50.8
QBA60992.1\|3011566_3012796_-	Integrase	M9NZA5	Enterobacteria_phage	1.1e-120	51.9
QBA60993.1\|3012930_3013821_+	Peptide transport system permease protein SapC	NA	NA	NA	NA
QBA60994.1\|3013820_3014813_+	putative D,D-dipeptide transport ATP-binding protein DdpD	G9BWD6	Planktothrix_phage	3.0e-07	27.2
QBA60995.1\|3014814_3015624_+	Glutathione import ATP-binding protein GsiA	A0A2H4PQG7	Staphylococcus_phage	2.1e-14	28.9

DBSCAN-SWA_5

3137633 : 3145564

Pseudomonas_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA61111.1\|3137633_3138899_-	DNA polymerase IV	I6RSM4	Salmonella_phage	7.6e-197	79.6
QBA61112.1\|3138901_3139321_-	LexA repressor	A0A1W6JNS2	Morganella_phage	5.5e-35	57.5
QBA61113.1\|3139399_3140887_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
QBA61114.1\|3141309_3142797_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
QBA61115.1\|3143219_3144707_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
QBA61116.1\|3145321_3145564_+	DNA-damage-inducible protein I	Q6UAW0	Klebsiella_phage	4.1e-27	72.2

DBSCAN-SWA_6

3395892 : 3490753

Salmonella_phage(55.17%)

terminase,capsid,portal,protease,plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA61346.1\|3395892_3397185_-\|tRNA	Serine--tRNA ligase	A0A1B1IVT2	uncultured_Mediterranean_phage	7.3e-94	44.7
QBA61347.1\|3397275_3398619_-	Replication-associated recombination protein A	G3MBE0	Bacillus_virus	7.3e-81	40.8
QBA61348.1\|3398627_3399239_-	Outer-membrane lipoprotein carrier protein precursor	NA	NA	NA	NA
QBA61349.1\|3399361_3403615_-	DNA translocase FtsK	S5VNE3	Mycobacterium_phage	5.2e-88	49.2
QBA61350.1\|3403750_3404245_-	Leucine-responsive regulatory protein	NA	NA	NA	NA
QBA61351.1\|3404750_3405746_+	Thioredoxin reductase	A0A2I2L5E1	Orpheovirus	3.3e-62	44.0
QBA61352.1\|3405860_3407627_+	ATP-binding/permease protein CydD	W8CYL7	Bacillus_phage	2.3e-21	25.9
QBA61353.1\|3407627_3409349_+	Lipid A export ATP-binding/permease protein MsbA	A0A2R8FG22	Brazilian_cedratvirus	1.5e-14	34.3
QBA61354.1\|3409393_3410095_+\|tRNA	Leucyl/phenylalanyl-tRNA--protein transferase	NA	NA	NA	NA
QBA61355.1\|3410448_3410667_+	Translation initiation factor IF-1	NA	NA	NA	NA
QBA61356.1\|3410787_3413067_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	1.6e-165	42.0
QBA61357.1\|3413097_3413415_-\|protease	ATP-dependent Clp protease adapter protein ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	2.0e-13	45.7
QBA61358.1\|3413740_3413962_+	Cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	1.3e-16	61.2
QBA61359.1\|3414038_3415979_-	Macrolide export ATP-binding/permease protein MacB	G9BWD6	Planktothrix_phage	1.9e-37	40.5
QBA61360.1\|3415975_3417091_-	Macrolide-specific efflux protein MacA	A0A140XAI1	Dickeya_phage	1.3e-06	52.7
QBA61361.1\|3417237_3418896_-	DNA replication and repair protein RecF	NA	NA	NA	NA
QBA61362.1\|3419315_3420011_+	Aquaporin Z	NA	NA	NA	NA
QBA61363.1\|3420126_3421026_+	hypothetical protein	NA	NA	NA	NA
QBA61364.1\|3421169_3422822_+	Hydroxylamine reductase	NA	NA	NA	NA
QBA61365.1\|3422832_3423801_+	NADH oxidoreductase hcr	NA	NA	NA	NA
QBA61366.1\|3424012_3424447_-	Putative oxidoreductase CatD	NA	NA	NA	NA
QBA61367.1\|3424598_3426317_+	Pyruvate dehydrogenase, ubiquinone	NA	NA	NA	NA
QBA61368.1\|3426355_3427357_+	Low specificity L-threonine aldolase	NA	NA	NA	NA
QBA61369.1\|3427367_3428810_+	short chain dehydrogenase	NA	NA	NA	NA
QBA61370.1\|3428897_3429911_+	3 beta-hydroxysteroid dehydrogenase/Delta 5-->4-isomerase	NA	NA	NA	NA
QBA61371.1\|3429907_3430738_-	N-acetylmuramoyl-L-alanine amidase AmiD precursor	A0A1B0UZW5	Roseobacter_phage	4.1e-05	31.6
QBA61372.1\|3430769_3431909_-	Phytochrome-like protein cph2	NA	NA	NA	NA
QBA61373.1\|3432302_3432467_-	hypothetical protein	NA	NA	NA	NA
QBA61374.1\|3432786_3433302_+	putative lipoprotein YbjP precursor	NA	NA	NA	NA
QBA61375.1\|3433528_3434257_+	Arginine transport ATP-binding protein ArtP	G9BWD6	Planktothrix_phage	1.2e-29	37.1
QBA61376.1\|3434256_3435009_+	Putative ABC transporter arginine-binding protein 2 precursor	NA	NA	NA	NA
QBA61377.1\|3435015_3435732_+	Arginine ABC transporter permease protein ArtQ	NA	NA	NA	NA
QBA61378.1\|3435731_3436400_+	Arginine ABC transporter permease protein ArtM	NA	NA	NA	NA
QBA61379.1\|3436583_3437315_+	ABC transporter arginine-binding protein 1 precursor	NA	NA	NA	NA
QBA61380.1\|3437357_3438830_-	Alkaline phosphatase synthesis sensor protein PhoR	W8CYF6	Bacillus_phage	7.9e-28	31.8
QBA61381.1\|3438826_3439543_-	Transcriptional regulatory protein WalR	W8CYM9	Bacillus_phage	2.1e-34	36.9
QBA61382.1\|3439621_3440749_-	23S rRNA (uracil(747)-C(5))-methyltransferase RlmC	A0A2K5B251	Erysipelothrix_phage	1.3e-19	25.6
QBA61383.1\|3440790_3441279_-	Inner membrane protein YbjO	NA	NA	NA	NA
QBA61384.1\|3441336_3442182_-	Inner membrane ABC transporter permease protein YdcV	NA	NA	NA	NA
QBA61385.1\|3442178_3443132_-	Putrescine transport system permease protein PotH	NA	NA	NA	NA
QBA61386.1\|3443142_3444309_-	Spermidine/putrescine import ATP-binding protein PotA	G3M9Y6	Bacillus_virus	2.3e-30	34.9
QBA61387.1\|3444439_3445552_-	Putrescine-binding periplasmic protein precursor	NA	NA	NA	NA
QBA61388.1\|3445900_3446380_-	Putative bacterial sensory transduction regulator	NA	NA	NA	NA
QBA61389.1\|3446468_3447371_-	Ribosomal protein S6 modification protein	A0A1D7SR78	Cyanophage	2.0e-34	35.3
QBA61390.1\|3448192_3448480_-	hypothetical protein	NA	NA	NA	NA
QBA61391.1\|3448682_3448946_+	Glutaredoxin-1	A0A2I7SAE2	Vibrio_phage	1.6e-27	73.1
QBA61392.1\|3448952_3449336_-	Inner membrane protein YbjM	NA	NA	NA	NA
QBA61393.1\|3449602_3451288_+	Aspartate/alanine antiporter	NA	NA	NA	NA
QBA61394.1\|3451507_3451726_-	DNA-binding transcriptional regulator	Q53ZE7	Salmonella_virus	7.5e-20	69.0
QBA61395.1\|3451817_3452918_-	Phage late control gene D protein (GPD)	A0A1S6KZZ5	Salmonella_phage	4.9e-176	87.4
QBA61396.1\|3452914_3453400_-	Phage P2 GpU	E5G6Q2	Salmonella_phage	7.2e-63	75.6
QBA61397.1\|3453396_3456024_-\|tail	Phage-related minor tail protein	E5FFG5	Burkholderia_phage	5.6e-117	42.0
QBA61398.1\|3456150_3456450_-\|tail	Phage tail protein E	E5G6P9	Salmonella_phage	3.7e-33	79.0
QBA61399.1\|3456502_3457018_-\|tail	major virion tail protein	E5G6P8	Salmonella_phage	1.3e-81	85.4
QBA61400.1\|3457027_3458200_-\|tail	virion tail sheath protein	A0A1S6KZY7	Salmonella_phage	1.9e-210	93.3
QBA61401.1\|3458338_3459415_-	hypothetical protein	Q37842	Escherichia_phage	1.2e-25	44.8
QBA61402.1\|3459444_3459648_-	hypothetical protein	NA	NA	NA	NA
QBA61403.1\|3459644_3460376_-	hypothetical protein	NA	NA	NA	NA
QBA61404.1\|3460379_3463331_-	hypothetical protein	A0A2H4N7A3	Pectobacterium_phage	1.2e-06	50.9
QBA61405.1\|3463332_3463932_-\|tail	Phage tail protein (Tail_P2_I)	A0A1S6L000	Salmonella_phage	1.3e-58	60.5
QBA61406.1\|3463924_3464833_-\|plate	Baseplate J-like protein	E5G6N8	Salmonella_phage	7.6e-106	66.9
QBA61407.1\|3464819_3465182_-	Gene 25-like lysozyme	A0A1S6KZZ4	Salmonella_phage	5.8e-49	84.7
QBA61408.1\|3465178_3465751_-\|plate	Phage-related baseplate assembly protein	E5G6N6	Salmonella_phage	4.7e-77	72.3
QBA61409.1\|3465845_3466538_+	hypothetical protein	NA	NA	NA	NA
QBA61410.1\|3466534_3466981_-	virion neck protein Ne1	A0A1S6L001	Salmonella_phage	2.2e-50	71.2
QBA61411.1\|3466973_3467405_-\|tail	virion tail completion protein, type 1	A0A1S6KZY0	Salmonella_phage	9.9e-64	82.5
QBA61412.1\|3467500_3467929_-	Phage spanin Rz	A0A1S6KZX8	Salmonella_phage	9.6e-51	77.9
QBA61413.1\|3467925_3468309_-	hypothetical protein	A0A1S6KZZ2	Salmonella_phage	2.1e-17	42.0
QBA61414.1\|3468313_3468823_-	Lysozyme RrrD	E5G6N1	Salmonella_phage	2.1e-81	83.4
QBA61415.1\|3468803_3469019_-	hypothetical protein	E5G6N0	Salmonella_phage	3.6e-30	90.1
QBA61416.1\|3469022_3469226_-	Phage Tail Protein X	A0A1S6KZY4	Salmonella_phage	1.3e-29	88.1
QBA61417.1\|3469225_3469690_-	virion neck adaptor, type 1	A0A1S6KZW8	Salmonella_phage	8.4e-77	89.0
QBA61418.1\|3469785_3470436_-\|terminase	terminase DNA loader, small subunit	E5G6M7	Salmonella_phage	8.7e-112	96.3
QBA61419.1\|3470439_3471498_-\|capsid	major virion capsid protein	E5G6M6	Salmonella_phage	1.1e-180	93.1
QBA61420.1\|3471514_3472348_-\|capsid	Phage capsid scaffolding protein (GPO) serine peptidase	A0A1S6KZW9	Salmonella_phage	6.3e-123	88.8
QBA61421.1\|3472490_3474257_+\|terminase	terminase DNA loader, large subunit	A0A1S6KZW3	Salmonella_phage	0.0e+00	99.0
QBA61422.1\|3474256_3475282_+\|portal	virion portal protein	A0A1S6KZW5	Salmonella_phage	7.6e-171	86.7
QBA61423.1\|3475343_3477086_-	AIPR protein	NA	NA	NA	NA
QBA61424.1\|3477361_3478039_-	hypothetical protein	NA	NA	NA	NA
QBA61425.1\|3478153_3478387_-	DNA-damage-inducible protein I	E5G6M1	Salmonella_phage	4.7e-36	100.0
QBA61426.1\|3478397_3478694_-	hypothetical protein	E5G6M0	Salmonella_phage	5.1e-27	98.4
QBA61427.1\|3478686_3480174_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
QBA61428.1\|3480649_3483064_-	Bacteriophage replication gene A protein (GPA)	E5G6L9	Salmonella_phage	0.0e+00	97.5
QBA61429.1\|3483060_3483918_-	DNA adenine methylase	E5G6L8	Salmonella_phage	2.0e-156	95.4
QBA61430.1\|3483914_3484142_-	hypothetical protein	E5G6L7	Salmonella_phage	6.0e-36	98.7
QBA61431.1\|3484141_3484375_-	hypothetical protein	E5G6L6	Salmonella_phage	4.1e-32	96.1
QBA61432.1\|3484442_3484784_-	hypothetical protein	E5G6L5	Salmonella_phage	4.6e-56	99.1
QBA61433.1\|3484747_3484948_-	hypothetical protein	E5G6L4	Salmonella_phage	1.6e-32	97.0
QBA61434.1\|3484955_3485465_-	Phage regulatory protein CII (CP76)	E5G6L3	Salmonella_phage	5.8e-87	98.8
QBA61435.1\|3485497_3485719_-	hypothetical protein	NA	NA	NA	NA
QBA61436.1\|3485807_3486743_+	Bacteriophage CI repressor helix-turn-helix domain protein	A0A1S6KZZ7	Salmonella_phage	1.8e-30	39.9
QBA61437.1\|3486754_3487699_+	hypothetical protein	NA	NA	NA	NA
QBA61438.1\|3487664_3487805_-	hypothetical protein	NA	NA	NA	NA
QBA61439.1\|3487797_3489285_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
QBA61440.1\|3489700_3490753_+	Integrase	A0A218M4I3	Erwinia_phage	1.0e-106	57.0

DBSCAN-SWA_7

3902149 : 3981794

Escherichia_phage(22.95%)

head,terminase,capsid,portal,lysis,transposase,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA61808.1\|3902149_3902671_+\|transposase	ISKpn1 transposase OrfA	A0A1B1P776	Bacillus_phage	1.3e-14	33.5
QBA61809.1\|3902727_3903513_+\|transposase	ISKpn1 transposase OrfB	A0A2I6AZV9	Macacine_betaherpesvirus	3.3e-73	67.7
QBA61810.1\|3903514_3903646_+	hypothetical protein	NA	NA	NA	NA
QBA61811.1\|3903787_3904819_-	1,5-anhydro-D-fructose reductase	NA	NA	NA	NA
QBA61812.1\|3904828_3906001_-	1,5-anhydro-D-fructose reductase	NA	NA	NA	NA
QBA61813.1\|3905997_3906918_-	Inosose dehydratase	NA	NA	NA	NA
QBA61814.1\|3907489_3907915_+	hypothetical protein	NA	NA	NA	NA
QBA61815.1\|3907991_3909509_-\|tRNA	Lysine--tRNA ligase, heat inducible	A0A1V0SAC0	Catovirus	9.5e-85	36.3
QBA61816.1\|3909840_3911316_-	putative dipeptide and tripeptide permease YjdL	A0A0P0IY73	Acinetobacter_phage	6.9e-48	29.0
QBA61817.1\|3911375_3913523_-	Lysine decarboxylase, inducible	NA	NA	NA	NA
QBA61818.1\|3913605_3914940_-	putative cadaverine/lysine antiporter	NA	NA	NA	NA
QBA61819.1\|3915305_3916874_-	Transcriptional activator CadC	NA	NA	NA	NA
QBA61820.1\|3917166_3917439_-	hypothetical protein	NA	NA	NA	NA
QBA61821.1\|3917539_3918460_-	Lipid A biosynthesis lauroyl acyltransferase	A0A1W6JP29	Morganella_phage	5.4e-51	40.1
QBA61822.1\|3918970_3919837_+	Acetyltransferase (GNAT) family protein	NA	NA	NA	NA
QBA61823.1\|3919859_3920885_-	putative fimbrial-like protein YcbV precursor	NA	NA	NA	NA
QBA61824.1\|3920886_3923322_-	Outer membrane usher protein HtrE precursor	NA	NA	NA	NA
QBA61825.1\|3923332_3924028_-	Chaperone protein EcpD precursor	NA	NA	NA	NA
QBA61826.1\|3924086_3924647_-	Major fimbrial subunit precursor	NA	NA	NA	NA
QBA61827.1\|3925118_3925781_+	hypothetical protein	NA	NA	NA	NA
QBA61828.1\|3925758_3926064_+	hypothetical protein	NA	NA	NA	NA
QBA61829.1\|3926116_3927421_-	Citrate synthase	NA	NA	NA	NA
QBA61830.1\|3927931_3928102_+	hypothetical protein	NA	NA	NA	NA
QBA61831.1\|3928180_3928582_-	5-hydroxyisourate hydrolase precursor	NA	NA	NA	NA
QBA61832.1\|3929933_3930251_-	DNA polymerase V subunit UmuD	K7PGV5	Enterobacterial_phage	3.7e-23	52.9
QBA61833.1\|3930250_3930490_-	hypothetical protein	K7P7N3	Enterobacteria_phage	6.1e-15	50.6
QBA61834.1\|3930567_3932055_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
QBA61835.1\|3932504_3932714_-	hypothetical protein	NA	NA	NA	NA
QBA61836.1\|3932710_3933442_-	hypothetical protein	NA	NA	NA	NA
QBA61837.1\|3933445_3936433_-	hypothetical protein	A0A286S1P0	Klebsiella_phage	2.1e-19	50.0
QBA61838.1\|3936519_3938997_-	hypothetical protein	F1C5A7	Cronobacter_phage	2.7e-198	45.6
QBA61839.1\|3938983_3939379_-	hypothetical protein	F1C5F2	Cronobacter_phage	8.0e-36	54.0
QBA61840.1\|3939375_3939846_-	hypothetical protein	R9TPR6	Aeromonas_phage	2.5e-28	41.0
QBA61841.1\|3939845_3940322_-	hypothetical protein	A0A2P1MXB5	Escherichia_phage	3.0e-37	49.7
QBA61842.1\|3940364_3943811_-	Tail length tape measure protein	Q5G8W8	Enterobacteria_phage	1.4e-163	48.6
QBA61843.1\|3943903_3944407_-	hypothetical protein	NA	NA	NA	NA
QBA61844.1\|3944534_3945320_-	hypothetical protein	A0A2L1IV39	Escherichia_phage	1.9e-84	59.7
QBA61845.1\|3945385_3946099_-	hypothetical protein	H6WRU8	Salmonella_phage	3.9e-49	50.2
QBA61846.1\|3946088_3946259_-	Arc-like DNA binding domain protein	I6R9A8	Salmonella_phage	6.1e-17	87.0
QBA61847.1\|3946358_3946718_+	Arc-like DNA binding domain protein	A0A0P0ZBD1	Stx2-converting_phage	3.8e-16	47.5
QBA61848.1\|3946734_3947502_-	hypothetical protein	NA	NA	NA	NA
QBA61849.1\|3947498_3947753_-	hypothetical protein	K7PM89	Enterobacteria_phage	6.7e-20	73.0
QBA61850.1\|3947755_3948511_-	KilA-N domain protein	K7PGT4	Enterobacteria_phage	2.4e-60	51.0
QBA61851.1\|3948686_3949364_-	hypothetical protein	F1C5E8	Cronobacter_phage	4.8e-73	57.9
QBA61852.1\|3949416_3950169_-	Bacterial Ig-like domain (group 2)	G0ZNE6	Cronobacter_phage	5.8e-43	42.1
QBA61853.1\|3950237_3950630_-\|tail	virion tail completion protein, type 1	G0ZNE4	Cronobacter_phage	5.1e-35	52.7
QBA61854.1\|3950626_3951052_-	virion neck protein Ne1	R9TPP7	Aeromonas_phage	5.1e-28	47.9
QBA61855.1\|3951054_3951417_-\|head	virion head closure protein, neck type 1	A0A173GCE0	Salmonella_phage	1.8e-18	45.0
QBA61856.1\|3951589_3951970_-	virion neck adaptor, type 1	F1C5E2	Cronobacter_phage	5.3e-29	55.3
QBA61857.1\|3951972_3952212_-	hypothetical protein	NA	NA	NA	NA
QBA61858.1\|3952222_3953317_-\|capsid	major virion capsid protein	F1C5E1	Cronobacter_phage	1.7e-123	62.8
QBA61859.1\|3953328_3953757_-	hypothetical protein	F1C5E0	Cronobacter_phage	1.6e-42	60.8
QBA61860.1\|3953760_3955146_-	hypothetical protein	F1C5D9	Cronobacter_phage	2.3e-154	60.0
QBA61861.1\|3955218_3955695_-	hypothetical protein	NA	NA	NA	NA
QBA61862.1\|3955736_3956741_-	Phage Mu protein F like protein	F1C5D8	Cronobacter_phage	9.0e-116	69.7
QBA61863.1\|3956715_3958137_-\|portal	virion portal protein	F1C5D7	Cronobacter_phage	9.6e-148	57.1
QBA61864.1\|3958149_3959622_-\|terminase	terminase DNA loader, large subunit	A0A1W6JNY3	Morganella_phage	1.3e-248	82.5
QBA61865.1\|3959621_3960224_-	hypothetical protein	G8C7P2	Escherichia_phage	5.4e-76	80.9
QBA61866.1\|3960594_3960924_+	hypothetical protein	NA	NA	NA	NA
QBA61867.1\|3961029_3961494_-\|lysis	Bacteriophage lysis protein	Q76H63	Enterobacteria_phage	2.4e-55	73.2
QBA61868.1\|3961490_3962021_-	Lysozyme RrrD	G9L6J6	Escherichia_phage	6.0e-79	78.5
QBA61869.1\|3962023_3962272_-	Lysis protein S	NA	NA	NA	NA
QBA61870.1\|3963181_3963871_-	Phage antitermination protein Q	I6PDF8	Cronobacter_phage	1.4e-56	54.5
QBA61871.1\|3963867_3964398_-	AP2 domain protein	A0A193GYW9	Enterobacter_phage	5.2e-30	43.1
QBA61872.1\|3964390_3964528_-	hypothetical protein	NA	NA	NA	NA
QBA61873.1\|3964524_3965160_-	Bacteriophage Lambda NinG protein	M9NYX8	Enterobacteria_phage	2.7e-81	77.9
QBA61874.1\|3965152_3965323_-	prophage protein NinE	G8C7V4	Escherichia_phage	1.3e-14	73.2
QBA61875.1\|3965322_3965778_-	hypothetical protein	K7P7B8	Enterobacteria_phage	8.0e-56	69.5
QBA61876.1\|3966030_3966279_-	hypothetical protein	NA	NA	NA	NA
QBA61877.1\|3966278_3966926_-	hypothetical protein	A5LH60	Enterobacteria_phage	4.5e-12	32.6
QBA61878.1\|3966922_3967099_-	hypothetical protein	NA	NA	NA	NA
QBA61879.1\|3967098_3967941_-	hypothetical protein	A0A2H4FRZ0	Salmonella_phage	1.8e-29	60.8
QBA61880.1\|3967937_3968051_-	hypothetical protein	NA	NA	NA	NA
QBA61881.1\|3968047_3968554_-	hypothetical protein	A0A0A6Z565	Enterobacter_phage	3.0e-27	59.6
QBA61882.1\|3968550_3968844_-	hypothetical protein	O48423	Enterobacteria_phage	3.3e-26	65.6
QBA61883.1\|3968843_3970274_-	Replicative DNA helicase	Q9MCT4	Escherichia_phage	2.6e-185	66.7
QBA61884.1\|3970263_3971163_-	hypothetical protein	F1C5C3	Cronobacter_phage	5.4e-88	54.9
QBA61885.1\|3971155_3971302_-	hypothetical protein	NA	NA	NA	NA
QBA61886.1\|3971387_3971609_-	Bacteriophage CII protein	G8EYH8	Enterobacteria_phage	6.9e-05	41.7
QBA61887.1\|3971649_3971883_-	hypothetical protein	G8C7U2	Escherichia_phage	4.3e-13	50.7
QBA61888.1\|3972010_3972700_+	HTH-type transcriptional regulator PrtR	G8C7U1	Escherichia_phage	4.3e-61	52.2
QBA61889.1\|3973050_3973266_+	hypothetical protein	B5WZV1	Pseudomonas_phage	1.6e-09	48.6
QBA61890.1\|3973262_3973373_+	hypothetical protein	NA	NA	NA	NA
QBA61891.1\|3973365_3973560_+	hypothetical protein	NA	NA	NA	NA
QBA61892.1\|3973648_3973933_+	hypothetical protein	G8C7T1	Escherichia_phage	8.0e-30	62.8
QBA61893.1\|3973948_3974794_+	RecT family protein	A0A1I9KF88	Aeromonas_phage	6.9e-69	59.2
QBA61894.1\|3974790_3975471_+	YqaJ-like viral recombinase domain protein	A0A0M3ULE0	Salmonella_phage	7.9e-124	93.4
QBA61895.1\|3975467_3975626_+	hypothetical protein	A0A0N7CHV0	Escherichia_phage	3.0e-10	60.8
QBA61896.1\|3975622_3976279_+	hypothetical protein	G8C7S6	Escherichia_phage	2.7e-113	87.5
QBA61897.1\|3976275_3977043_+	hypothetical protein	D5LH17	Escherichia_phage	1.7e-66	53.4
QBA61898.1\|3977039_3977258_+	hypothetical protein	A0A1I9LJM7	Stx_converting_phage	1.2e-09	47.2
QBA61899.1\|3977259_3977475_+	hypothetical protein	A0A0K2FI84	Escherichia_phage	4.0e-13	52.9
QBA61900.1\|3977688_3978852_+	Integrase	G8C7S0	Escherichia_phage	3.3e-202	87.3
QBA61901.1\|3979282_3980149_+	Bifunctional protein FolD protein	A0A249XZQ2	Enterococcus_phage	1.3e-30	34.8
QBA61902.1\|3980150_3980363_+	ribosome-associated protein	NA	NA	NA	NA
QBA61903.1\|3980408_3981794_-\|tRNA	Cysteine--tRNA ligase	M1PG92	Moumouvirus	3.5e-46	35.4

DBSCAN-SWA_8

4191349 : 4203003

Enterobacteria_phage(70.0%)

integrase

attL 4191799:4191813|attR 4214856:4214870

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA62106.1\|4191349_4192453_+	Glutamate 5-kinase	A0A1X9I5D0	Streptococcus_phage	4.8e-62	40.5
4191799:4191813	attL	NA	NA	NA	NA
QBA62107.1\|4192463_4193717_+	Gamma-glutamyl phosphate reductase	A0A1X9I5D4	Streptococcus_phage	8.9e-89	44.9
QBA62108.1\|4194069_4195260_+\|integrase	integrase	Q7M297	Enterobacteria_phage	6.4e-145	62.7
QBA62109.1\|4195247_4196198_+	partitioning protein	A0A1X9IGI7	Lactococcus_phage	1.2e-13	27.1
QBA62110.1\|4196197_4196623_+	hypothetical protein	NA	NA	NA	NA
QBA62111.1\|4197191_4197758_-	Phage polarity suppression protein (Psu)	Q7M2A1	Enterobacteria_phage	1.5e-59	64.3
QBA62112.1\|4197775_4198021_-	DNA-binding transcriptional regulator	Q7M294	Enterobacteria_phage	1.9e-19	58.0
QBA62113.1\|4198017_4198755_-	hypothetical protein	Q7M2A2	Enterobacteria_phage	9.0e-73	60.7
QBA62114.1\|4199296_4199563_+	Prophage CP4-57 regulatory protein (AlpA)	Q7M299	Enterobacteria_phage	2.6e-30	71.6
QBA62115.1\|4199922_4200117_+	hypothetical protein	Q7M2A7	Enterobacteria_phage	3.2e-22	85.5
QBA62116.1\|4200113_4200341_+	hypothetical protein	NA	NA	NA	NA
QBA62117.1\|4200337_4200658_+	hypothetical protein	NA	NA	NA	NA
QBA62118.1\|4200669_4203003_+	DNA primase TraC	Q7M2A8	Enterobacteria_phage	0.0e+00	82.2
4214856:4214870	attR	NA	NA	NA	NA

DBSCAN-SWA_9

4671247 : 4677072

Enterobacteria_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA62537.1\|4671247_4673581_-	DNA primase TraC	Q7M2A8	Enterobacteria_phage	0.0e+00	83.9
QBA62538.1\|4673595_4673916_-	hypothetical protein	NA	NA	NA	NA
QBA62539.1\|4673912_4674140_-	hypothetical protein	NA	NA	NA	NA
QBA62540.1\|4674136_4674331_-	hypothetical protein	Q7M2A7	Enterobacteria_phage	7.2e-22	85.5
QBA62541.1\|4674681_4674948_-	Prophage CP4-57 regulatory protein (AlpA)	Q7M299	Enterobacteria_phage	2.0e-30	71.6
QBA62542.1\|4675508_4676246_+	hypothetical protein	Q7M2A2	Enterobacteria_phage	1.1e-70	59.4
QBA62543.1\|4676242_4676488_+	DNA-binding transcriptional regulator	Q7M294	Enterobacteria_phage	5.5e-19	56.8
QBA62544.1\|4676505_4677072_+	Phage polarity suppression protein (Psu)	Q7M2A1	Enterobacteria_phage	9.7e-59	63.8

DBSCAN-SWA_10

4869485 : 4874647

Escherichia_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA62720.1\|4869485_4870244_+	Integral membrane protein TerC family protein	W8EBD0	Pseudomonas_phage	4.3e-30	42.2
QBA62721.1\|4870389_4871307_+	Curved DNA-binding protein	A0A1V0SCV5	Indivirus	2.8e-07	42.2
QBA62722.1\|4871306_4871612_+	Chaperone modulatory protein CbpM	NA	NA	NA	NA
QBA62723.1\|4871780_4872302_+	Transposase	A0A1B1P776	Bacillus_phage	1.3e-14	33.5
QBA62724.1\|4872358_4873144_+	Integrase core domain protein	A0A2I6AZV9	Macacine_betaherpesvirus	3.3e-73	67.7
QBA62725.1\|4873309_4873681_-	Plasmid stability protein	A0A222YWJ6	Escherichia_phage	2.8e-22	53.7
QBA62726.1\|4873690_4874647_-	Plasmid segregation protein ParM	A0A222YXF2	Escherichia_phage	1.3e-143	78.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

3. CP035538

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

261 : 9884

Escherichia_phage(42.86%)

integrase

attL 5025:5038|attR 15214:15227

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA58071.1\|261_1749_-	group II intron reverse transcriptase/maturase	A0A0U4J920	Pseudomonas_phage	1.2e-31	35.5
QBA58072.1\|2154_2586_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	1.6e-29	53.3
QBA58073.1\|2585_3857_+	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	4.9e-151	63.3
QBA58074.1\|3938_4913_-	plasmid partitioning protein ParB	Q38420	Escherichia_phage	2.6e-88	54.4
QBA58075.1\|4912_6118_-	plasmid partitioning protein ParA	A0A077SL49	Escherichia_phage	2.4e-163	69.6
5025:5038	attL	NA	NA	NA	NA
QBA58076.1\|6532_6802_+	hypothetical protein	NA	NA	NA	NA
QBA58077.1\|7158_8025_-	DNA replication protein RepB	A0A222YYK1	Escherichia_phage	1.5e-23	31.1
QBA58078.1\|8963_9092_-	hypothetical protein	NA	NA	NA	NA
QBA58079.1\|9107_9884_-\|integrase	integrase	I3WFA4	Macacine_betaherpesvirus	6.4e-53	92.9
15214:15227	attR	NA	NA	NA	NA

DBSCAN-SWA_2

13046 : 25160

Escherichia_phage(80.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA58085.1\|13046_13322_+\|transposase	IS1 family transposase InsA	Q71TE9	Escherichia_phage	6.1e-43	90.1
QBA58086.1\|13366_13744_+\|transposase	IS1 family transposase InsB	Q71TF0	Escherichia_phage	1.9e-63	93.6
QBA58087.1\|14021_14627_-	aminoglycoside 6'-N-acetyltransferase AAC(6')-Ib	NA	NA	NA	NA
QBA58088.1\|14809_15367_-	Tn3 resolvase TnpR	Q1MVP4	Enterobacteria_phage	2.0e-93	98.4
QBA58089.1\|15672_16377_-\|transposase	IS26 transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QBA58090.1\|17706_18573_+	Beta-lactamase SHV-11	A0A077SL40	Escherichia_phage	3.8e-155	99.3
QBA58091.1\|18593_19355_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.9e-134	100.0
QBA58092.1\|19615_20518_+	3-hydroxyisobutyrate dehydrogenase	A0A077SLF7	Escherichia_phage	7.7e-159	99.3
QBA58093.1\|20529_21162_+	hypothetical protein	A0A077SLJ7	Escherichia_phage	8.5e-96	98.9
QBA58094.1\|21158_21857_+	hypothetical protein	A0A077SLJ7	Escherichia_phage	3.0e-102	98.5
QBA58095.1\|22142_25160_+\|transposase	transposase	A0A125RQ78	Bacillus_phage	3.2e-52	24.7

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

4. CP035537

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

47351 : 82106

Escherichia_phage(30.77%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBA58014.1\|47351_48572_+\|transposase	ISKox3 transposase	NA	NA	NA	NA
QBA58015.1\|48672_49893_+\|transposase	ISKox3 transposase	NA	NA	NA	NA
QBA58016.1\|49952_50375_+	DNA polymerase V subunit UmuD	A0A1W6JNS2	Morganella_phage	3.1e-30	51.5
QBA58017.1\|50374_51646_+	DNA polymerase V subunit UmuC	F1C5A5	Cronobacter_phage	6.1e-154	63.0
QBA58018.1\|51781_52753_-	plasmid partitioning protein ParB	Q1MVJ4	Enterobacteria_phage	1.4e-113	68.9
QBA58019.1\|52749_53955_-	plasmid partitioning protein ParA	Q1MVJ3	Enterobacteria_phage	1.1e-205	89.2
QBA58020.1\|54317_54959_+	serine recombinase	A0A1V0E035	Clostridioides_phage	5.7e-07	31.2
QBA58021.1\|54996_55344_+	hypothetical protein	NA	NA	NA	NA
QBA58022.1\|55333_55687_+	hypothetical protein	NA	NA	NA	NA
QBA58023.1\|55723_56662_+\|transposase	ISNCY family transposase	Q2A0A7	Sodalis_phage	2.1e-74	53.4
QBA58024.1\|56693_57542_-	DeoR family transcriptional regulator	A0A077SK06	Escherichia_phage	1.3e-67	55.6
QBA58025.1\|57735_58644_+	oxidoreductase	A0A077SLF7	Escherichia_phage	3.9e-118	75.9
QBA58026.1\|58640_59504_+	hypothetical protein	A0A077SLJ7	Escherichia_phage	7.0e-85	61.4
QBA58027.1\|59515_60220_+\|transposase	IS26 transposase	A0A077SL39	Escherichia_phage	6.9e-139	99.6
QBA58028.1\|62166_62598_+	entry exclusion protein TraS	NA	NA	NA	NA
QBA58029.1\|63481_65719_+	conjugal transfer protein TraD	NA	NA	NA	NA
QBA58030.1\|65718_70959_+	conjugal transfer protein TraI	NA	NA	NA	NA
QBA58031.1\|70960_71698_+	conjugal transfer pilin acetylase TraX	NA	NA	NA	NA
QBA58032.1\|71764_72484_+	conjugal transfer fertility inhibition protein FinO	NA	NA	NA	NA
QBA58033.1\|72476_73268_+	DsbA oxidoreductase	NA	NA	NA	NA
QBA58034.1\|73415_73961_+	endonuclease	A0A1B2LRT6	Wolbachia_phage	1.0e-20	33.1
QBA58035.1\|74112_74391_+	replication protein RepB	NA	NA	NA	NA
QBA58036.1\|74609_74687_+	RepA leader peptide Tap	NA	NA	NA	NA
QBA58037.1\|74679_75543_+	incFII family plasmid replication initiator RepA	NA	NA	NA	NA
QBA58038.1\|76401_76548_-	hypothetical protein	NA	NA	NA	NA
QBA58039.1\|76686_77535_+	hypothetical protein	NA	NA	NA	NA
QBA58040.1\|77594_77879_+	hypothetical protein	NA	NA	NA	NA
QBA58041.1\|77967_78261_+	hypothetical protein	NA	NA	NA	NA
QBA58042.1\|78275_78866_+	hypothetical protein	NA	NA	NA	NA
QBA58043.1\|78892_79474_+	hypothetical protein	NA	NA	NA	NA
QBA58044.1\|80171_81710_-\|transposase	ISKpn24 transposase, OrfC	A0A0P0ZEB3	Stx2-converting_phage	5.1e-280	94.3
QBA58045.1\|81758_82106_-\|transposase	ISKpn24 transposase, OrfB	A0A0P0ZDM8	Stx2-converting_phage	2.6e-62	100.0

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP035536

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

2. CP035540

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

3. CP035538

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection

4. CP035537

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection