CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035671	Staphylococcus aureus subsp. aureus strain VB31683 chromosome, complete genome	0 crisprs	RT,DEDDh,cas3,WYL,csa3	0	0	11	0

Results visualization

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CRISPR-Cas detection and classification

Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

36543 : 120593

107

Staphylococcus_phage(80.26%)

protease,portal,terminase,capsid,integrase,tail,holin,tRNA,head

attL 40464:40481|attR 110382:110399

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB17252.1\|36543_37269_+	response regulator transcription factor	W8CYM9	Bacillus_phage	3.5e-45	43.0
QBB17253.1\|37249_39001_+	HAMP domain-containing protein	A0A1V0SGX0	Hokovirus	1.3e-21	33.6
QBB17254.1\|39252_40170_+	DUF1672 domain-containing protein	NA	NA	NA	NA
QBB17255.1\|40172_42209_+	hypothetical protein	B5WZK7	Staphylococcus_phage	4.0e-54	53.7
40464:40481	attL	NA	NA	NA	NA
QBB17256.1\|42250_43456_-\|integrase	site-specific integrase	A0A2I6PEZ6	Staphylococcus_phage	1.6e-223	100.0
QBB17257.1\|43581_44196_+	ATPase	A7TW88	Staphylococcus_phage	7.9e-107	100.0
QBB17258.1\|44192_44339_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.1e-14	89.6
QBB17259.1\|44429_44825_-	hypothetical protein	A0ZS06	Staphylococcus_virus	1.7e-70	100.0
QBB17260.1\|45341_46058_-	helix-turn-helix domain-containing protein	A0A2I6PDG6	Staphylococcus_phage	7.8e-130	99.6
QBB17261.1\|46221_46464_+	DUF739 family protein	A0A2I6PDH8	Staphylococcus_phage	2.8e-39	100.0
QBB17262.1\|46479_47232_+	oxidoreductase	G4KNN1	Staphylococcus_phage	1.1e-139	100.0
QBB17263.1\|47244_47505_+	transcriptional regulator	A7TW91	Staphylococcus_phage	2.7e-40	100.0
QBB17264.1\|47528_48068_-	hypothetical protein	A7TW92	Staphylococcus_phage	3.2e-96	98.9
QBB17265.1\|48124_48316_+	hypothetical protein	A7TWL8	Staphylococcus_phage	2.8e-26	100.0
QBB17266.1\|48317_48545_-	hypothetical protein	A7TWL9	Staphylococcus_phage	1.9e-37	98.7
QBB17267.1\|48600_48927_+	hypothetical protein	G4KNN2	Staphylococcus_phage	5.4e-54	100.0
QBB17268.1\|48923_49142_+	hypothetical protein	A0A2I6PDV4	Staphylococcus_phage	5.0e-32	100.0
QBB17269.1\|49171_49435_+	helix-turn-helix domain-containing protein	A0A2I6PEL8	Staphylococcus_phage	2.5e-46	100.0
QBB17270.1\|49686_50004_+	hypothetical protein	A0A2I6PEL3	Staphylococcus_phage	3.9e-33	100.0
QBB17271.1\|49936_50269_+	DUF1108 family protein	A0A2I6PDT0	Staphylococcus_phage	2.9e-55	100.0
QBB17272.1\|50278_50500_+	DUF2483 domain-containing protein	A7TWM6	Staphylococcus_phage	3.2e-34	100.0
QBB17273.1\|50492_51272_+	ATP-binding protein	A7TWM7	Staphylococcus_phage	4.3e-142	100.0
QBB19757.1\|51355_51856_+	single-strand DNA-binding protein	A7TWM8	Staphylococcus_phage	7.2e-90	100.0
QBB17274.1\|51868_52540_+	hypothetical protein	A7TWM9	Staphylococcus_phage	2.0e-127	100.0
QBB17275.1\|52676_52958_-	hypothetical protein	A0A1W6JPU7	Staphylococcus_phage	2.6e-49	100.0
QBB17276.1\|53084_53492_+	HNH endonuclease	A7TWN1	Staphylococcus_phage	7.1e-72	100.0
QBB17277.1\|53484_54207_+	helix-turn-helix domain-containing protein	A7TWN2	Staphylococcus_phage	1.6e-106	100.0
QBB17278.1\|54216_54990_+	AAA family ATPase	A7TWN3	Staphylococcus_phage	3.9e-143	100.0
QBB17279.1\|55157_55379_+	DUF3269 family protein	A7TWN4	Staphylococcus_phage	1.3e-35	100.0
QBB17280.1\|55389_55794_+	DUF1064 domain-containing protein	A7TWN5	Staphylococcus_phage	7.1e-72	100.0
QBB17281.1\|55798_55984_+	DUF3113 family protein	W5R8N4	Staphylococcus_phage	1.4e-27	100.0
QBB17282.1\|55984_56356_+	hypothetical protein	A7TWN6	Staphylococcus_phage	5.0e-56	100.0
QBB17283.1\|56356_56605_+	hypothetical protein	A7TWA8	Staphylococcus_phage	1.0e-41	100.0
QBB17284.1\|56613_56985_+	acetyltransferase	A0ZS31	Staphylococcus_virus	2.9e-64	100.0
QBB17285.1\|56977_57226_+	DUF1024 family protein	A7TWB0	Staphylococcus_phage	1.8e-38	100.0
QBB17286.1\|57218_57746_+	dUTP pyrophosphatase	A7TWB1	Staphylococcus_phage	7.8e-95	100.0
QBB17287.1\|57782_58019_+	DUF1381 domain-containing protein	C8CH06	Staphylococcus_phage	1.1e-35	100.0
QBB17288.1\|58043_58280_+	hypothetical protein	A7TWB3	Staphylococcus_phage	1.9e-37	100.0
QBB17289.1\|58272_58422_+	transcriptional regulator	A7TWB4	Staphylococcus_phage	4.8e-18	100.0
QBB19758.1\|58421_58622_+	DUF1514 domain-containing protein	D2JLD9	Staphylococcus_phage	1.4e-28	100.0
QBB19759.1\|58525_58738_-	hypothetical protein	NA	NA	NA	NA
QBB17290.1\|58644_59115_+	hypothetical protein	D2JLE0	Staphylococcus_phage	3.7e-72	100.0
QBB17291.1\|59229_59682_+	hypothetical protein	D2JLE1	Staphylococcus_phage	1.4e-79	100.0
QBB19760.1\|59696_60041_+	HNH endonuclease	D2JLE2	Staphylococcus_phage	4.2e-65	100.0
QBB17292.1\|60170_60638_+\|terminase	phage terminase small subunit P27 family	D2JLE3	Staphylococcus_phage	1.1e-81	100.0
QBB17293.1\|60640_62335_+\|terminase	phage terminase large subunit	D2JLE4	Staphylococcus_phage	0.0e+00	100.0
QBB17294.1\|62309_62549_+	hypothetical protein	A7TWC1	Staphylococcus_phage	7.0e-35	100.0
QBB19761.1\|62614_63805_+\|portal	phage portal protein	D2JLE6	Staphylococcus_phage	1.8e-224	100.0
QBB17295.1\|63797_64382_+\|head,protease	HK97 family phage prohead protease	D2JLE7	Staphylococcus_phage	9.8e-107	100.0
QBB17296.1\|64469_65717_+\|capsid	phage major capsid protein	A7TWC4	Staphylococcus_phage	5.0e-209	100.0
QBB17297.1\|65752_65911_+	hypothetical protein	D2JLE9	Staphylococcus_phage	3.2e-20	100.0
QBB17298.1\|65919_66252_+\|head,tail	phage head-tail adapter protein	A7TWQ4	Staphylococcus_phage	2.1e-58	100.0
QBB19762.1\|66238_66574_+\|head,tail	head-tail adaptor protein	A7TWC7	Staphylococcus_phage	1.1e-59	100.0
QBB17299.1\|66573_66951_+	HK97 gp10 family phage protein	D2JLF2	Staphylococcus_phage	1.1e-61	100.0
QBB17300.1\|66947_67328_+	hypothetical protein	A7TWC9	Staphylococcus_phage	5.8e-68	100.0
QBB17301.1\|67328_68282_+\|tail	phage tail protein	A7TWD0	Staphylococcus_phage	6.2e-175	100.0
QBB17302.1\|68346_68793_+	hypothetical protein	D2JLF5	Staphylococcus_phage	5.4e-73	100.0
QBB17303.1\|68852_68975_+	hypothetical protein	D2JLF6	Staphylococcus_phage	6.9e-15	100.0
QBB17304.1\|69030_73683_+\|tail	phage tail tape measure protein	A7TWD3	Staphylococcus_phage	0.0e+00	100.0
QBB17305.1\|73682_75173_+\|tail	phage tail protein	D2JLF8	Staphylococcus_phage	8.2e-299	100.0
QBB17306.1\|78962_79115_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
QBB17307.1\|79162_79450_+	hypothetical protein	G4KNR2	Staphylococcus_phage	9.9e-44	100.0
QBB17308.1\|79505_79880_+	hypothetical protein	G4KNR3	Staphylococcus_phage	3.3e-39	100.0
QBB17309.1\|80005_80308_+\|holin	phage holin	A0A2I6PF56	Staphylococcus_phage	3.1e-48	100.0
QBB17310.1\|80318_81773_+	CHAP domain-containing protein	A0A2I6PF47	Staphylococcus_phage	7.5e-289	100.0
QBB17311.1\|82162_83101_+	Panton-Valentine bi-component leukocidin subunit S	A0A2I6PF61	Staphylococcus_phage	1.7e-180	100.0
QBB17312.1\|83096_84080_+	Panton-Valentine bi-component leukocidin subunit F	A0A2I6PEU3	Staphylococcus_phage	4.0e-185	100.0
QBB19763.1\|84262_84514_+	hypothetical protein	A0ZS61	Staphylococcus_virus	2.4e-25	100.0
QBB17313.1\|84604_85540_+	DUF1672 domain-containing protein	NA	NA	NA	NA
QBB17314.1\|85523_85670_+	hypothetical protein	NA	NA	NA	NA
QBB17315.1\|85744_86653_+	DUF1672 domain-containing protein	NA	NA	NA	NA
QBB17316.1\|87107_88052_+	DUF1672 domain-containing protein	NA	NA	NA	NA
QBB17317.1\|88453_88999_+	ECF transporter S component	NA	NA	NA	NA
QBB17318.1\|89104_89353_-	ferredoxin	A0A127AYY7	Bacillus_phage	8.3e-15	48.0
QBB17319.1\|89460_90414_+	hypothetical protein	NA	NA	NA	NA
QBB17320.1\|90403_91783_+	ATP-dependent DNA helicase RecQ	L7RCS0	Acanthamoeba_polyphaga_moumouvirus	6.4e-56	33.3
QBB17321.1\|91935_93216_+	elastin-binding protein EbpS	NA	NA	NA	NA
QBB17322.1\|93341_93458_+	hypothetical protein	NA	NA	NA	NA
QBB17323.1\|93618_94605_+	YpdA family putative bacillithiol disulfide reductase	NA	NA	NA	NA
QBB17324.1\|94719_95688_-	asparaginase	NA	NA	NA	NA
QBB17325.1\|95764_96424_+	(d)CMP kinase	NA	NA	NA	NA
QBB17326.1\|96454_96571_+	hypothetical protein	NA	NA	NA	NA
QBB17327.1\|96596_96734_-	hypothetical protein	NA	NA	NA	NA
QBB17328.1\|96687_96879_+	hypothetical protein	NA	NA	NA	NA
QBB17329.1\|97135_98311_+	30S ribosomal protein S1	NA	NA	NA	NA
QBB17330.1\|98532_99843_+	ribosome biogenesis GTPase Der	NA	NA	NA	NA
QBB17331.1\|99859_100858_+	NAD(P)H-dependent glycerol-3-phosphate dehydrogenase	NA	NA	NA	NA
QBB17332.1\|101028_101301_+	DNA-binding protein HU	A7KV42	Bacillus_phage	4.2e-28	73.3
QBB17333.1\|101490_101805_-	hypothetical protein	NA	NA	NA	NA
QBB17334.1\|101731_102304_+	heptaprenyl pyrophosphate synthase subunit A	NA	NA	NA	NA
QBB17335.1\|102306_103032_+	demethylmenaquinone methyltransferase	NA	NA	NA	NA
QBB19764.1\|103048_103993_+	heptaprenyl diphosphate synthase	A0A1V0SE37	Indivirus	1.3e-10	24.4
QBB17336.1\|104084_104534_+	nucleoside-diphosphate kinase	D2E8E1	Anguillid_herpesvirus	2.4e-28	43.8
QBB17337.1\|104743_104944_+	hypothetical protein	NA	NA	NA	NA
QBB17338.1\|105330_106497_+	chorismate synthase	A0A291AU41	Pandoravirus	2.0e-34	32.1
QBB17339.1\|106522_107587_+	3-dehydroquinate synthase	NA	NA	NA	NA
QBB17340.1\|107596_108895_+	3-phosphoshikimate 1-carboxyvinyltransferase	NA	NA	NA	NA
QBB17341.1\|108901_110146_+	hypothetical protein	NA	NA	NA	NA
QBB17342.1\|110159_110735_+	IDEAL domain-containing protein	G3MAV7	Bacillus_virus	2.1e-08	27.2
110382:110399	attR	NA	NA	NA	NA
QBB17343.1\|110724_111312_+	DUF1405 domain-containing protein	NA	NA	NA	NA
QBB19765.1\|111383_112064_+	zinc metallopeptidase	NA	NA	NA	NA
QBB17344.1\|112400_112718_+	nucleotide pyrophosphohydrolase	NA	NA	NA	NA
QBB17345.1\|112955_114098_+	N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA	NA	NA	NA	NA
QBB17346.1\|114102_115305_+\|tRNA	CCA tRNA nucleotidyltransferase	H7BUW3	unidentified_phage	1.9e-35	43.3
QBB17347.1\|115291_116263_+	biotin--[acetyl-CoA-carboxylase] ligase	NA	NA	NA	NA
QBB17348.1\|116286_119007_+	ATP-dependent helicase	A0A1X9I5C8	Streptococcus_phage	3.7e-47	34.4
QBB17349.1\|119300_120593_+\|tRNA	asparagine--tRNA ligase	A0A2P1EMB4	Moumouvirus	9.6e-54	29.7

DBSCAN-SWA_2

582475 : 590942

Synechococcus_phage(33.33%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB17746.1\|582475_583036_-	phosphoribosylglycinamide formyltransferase	M4QRX9	Synechococcus_phage	1.5e-27	40.4
QBB17747.1\|583038_584067_-	phosphoribosylformylglycinamidine cyclo-ligase	Q58MH8	Prochlorococcus_phage	3.4e-62	41.7
QBB17748.1\|584059_585544_-	amidophosphoribosyltransferase	A0A0M3SGR2	Mollivirus	3.2e-45	31.7
QBB17749.1\|585522_587712_-	phosphoribosylformylglycinamidine synthase subunit PurL	A6N228	Microbacterium_phage	4.6e-141	39.8
QBB17750.1\|587704_588376_-	phosphoribosylformylglycinamidine synthase I	NA	NA	NA	NA
QBB17751.1\|588377_588641_-	phosphoribosylformylglycinamidine synthase subunit PurS	NA	NA	NA	NA
QBB17752.1\|588640_589345_-	phosphoribosylaminoimidazolesuccinocarboxamide synthase	M4R1E8	Synechococcus_phage	3.6e-47	41.6
QBB17753.1\|589348_590473_-	5-(carboxyamino)imidazole ribonucleotide synthase	NA	NA	NA	NA
QBB17754.1\|590459_590942_-	5-(carboxyamino)imidazole ribonucleotide mutase	A0A2P0VNU7	Tetraselmis_virus	5.2e-21	44.0

DBSCAN-SWA_3

611705 : 637133

Staphylococcus_phage(25.0%)

protease,bacteriocin

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB17768.1\|611705_612671_+\|protease	serine protease	A0A2H4PQP7	Staphylococcus_phage	1.0e-15	31.7
QBB17769.1\|612752_613934_+\|protease	cysteine protease staphopain B	NA	NA	NA	NA
QBB17770.1\|613971_614301_+	staphostatin B	NA	NA	NA	NA
QBB17771.1\|614538_615360_-	1,4-dihydroxy-2-naphthoyl-CoA synthase	NA	NA	NA	NA
QBB17772.1\|615352_616156_-	2-succinyl-6-hydroxy-2, 4-cyclohexadiene-1-carboxylate synthase	NA	NA	NA	NA
QBB17773.1\|616142_617816_-	2-succinyl-5-enolpyruvyl-6-hydroxy-3- cyclohexene-1-carboxylic-acid synthase	NA	NA	NA	NA
QBB19781.1\|619116_619194_-	hypothetical protein	NA	NA	NA	NA
QBB17774.1\|619344_620283_+	1,4-dihydroxy-2-naphthoate polyprenyltransferase	NA	NA	NA	NA
QBB17775.1\|620334_620886_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
QBB17776.1\|620975_621266_+	TM2 domain-containing protein	A0A060AN66	Enterococcus_phage	5.7e-07	38.0
QBB17777.1\|621329_621461_+	hypothetical protein	NA	NA	NA	NA
QBB17778.1\|622954_623311_+	DoxX family protein	NA	NA	NA	NA
QBB17779.1\|623399_623537_-	poly(glycerol-phosphate) alpha-glucosyltransferase	NA	NA	NA	NA
QBB17780.1\|623677_623968_+	hypothetical protein	NA	NA	NA	NA
QBB17781.1\|624055_624697_-	ABC transporter ATP-binding protein	G9BWD6	Planktothrix_phage	2.2e-19	33.7
QBB17782.1\|624693_625014_-	YxeA family protein	NA	NA	NA	NA
QBB17783.1\|625016_626981_-\|bacteriocin	bacteriocin-associated integral membrane family protein	NA	NA	NA	NA
QBB19782.1\|627024_627297_-\|bacteriocin	lactococcin 972 family bacteriocin	NA	NA	NA	NA
QBB17784.1\|628240_628843_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QBB17785.1\|628857_629034_-	DUF2187 domain-containing protein	NA	NA	NA	NA
QBB17786.1\|629232_630219_+	lipoate--protein ligase	NA	NA	NA	NA
QBB17787.1\|630299_630518_-	IDEAL domain-containing protein	NA	NA	NA	NA
QBB17788.1\|630727_631297_+	competence protein ComK	NA	NA	NA	NA
QBB19783.1\|631783_633295_-	bifunctional metallophosphatase/5'-nucleotidase	NA	NA	NA	NA
QBB17789.1\|633433_634792_-	TrkH family potassium uptake protein	NA	NA	NA	NA
QBB17790.1\|634808_637133_-\|protease	trypsin-like serine protease	W5SAB9	Pithovirus	2.8e-11	27.4

DBSCAN-SWA_4

837639 : 851606

uncultured_Caudovirales_phage(50.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB17977.1\|837639_838401_-	ABC transporter ATP-binding protein	Q9EMR9	Amsacta_moorei_entomopoxvirus	4.2e-17	30.6
QBB17978.1\|838397_839354_-	iron ABC transporter permease	A0A2H4J116	uncultured_Caudovirales_phage	6.1e-05	57.8
QBB17979.1\|839340_840312_-	ABC transporter permease	A0A2H4IY97	uncultured_Caudovirales_phage	7.8e-141	80.2
QBB17980.1\|840681_841653_-	class 1b ribonucleoside-diphosphate reductase subunit beta	A0A2H4J4P3	uncultured_Caudovirales_phage	4.2e-171	91.3
QBB17981.1\|841772_843878_-	class 1b ribonucleoside-diphosphate reductase subunit alpha	A0A2H4J2N6	uncultured_Caudovirales_phage	0.0e+00	91.6
QBB17982.1\|843840_844239_-	class Ib ribonucleoside-diphosphate reductase assembly flavoprotein NrdI	A0A2H4J545	uncultured_Caudovirales_phage	1.2e-52	72.0
QBB17983.1\|844388_844655_-	ribonucleoside-diphosphate reductase	NA	NA	NA	NA
QBB17984.1\|845039_845906_+	DMT family transporter	NA	NA	NA	NA
QBB17985.1\|845925_846426_+	NADPH-dependent 7-cyano-7-deazaguanine reductase QueF	E7DN65	Pneumococcus_phage	5.9e-52	71.5
QBB17986.1\|846763_848269_+	peptide MFS transporter	A0A0P0IY73	Acinetobacter_phage	2.0e-58	32.2
QBB17987.1\|848345_848447_-	hypothetical protein	NA	NA	NA	NA
QBB17988.1\|848537_849455_+	diacylglycerol kinase family lipid kinase	A0A1V0SBJ0	Catovirus	6.2e-07	22.4
QBB17989.1\|849847_850390_-	5'(3')-deoxyribonucleotidase	NA	NA	NA	NA
QBB17990.1\|850550_851606_-	histidinol-phosphate transaminase	A0A1X6WGT4	Pacmanvirus	1.8e-21	26.4

DBSCAN-SWA_5

863578 : 871396

Pandoravirus(16.67%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB18000.1\|863578_864730_-	aminodeoxychorismate synthase component I	S4VNU7	Pandoravirus	1.2e-23	36.1
QBB18001.1\|864713_865307_-	aminodeoxychorismate/anthranilate synthase component II	A0A0P0IKJ1	Acinetobacter_phage	3.7e-37	42.4
QBB18002.1\|865657_866326_+	7-cyano-7-deazaguanine synthase QueC	A0A2H4J8Q7	uncultured_Caudovirales_phage	9.6e-66	57.5
QBB18003.1\|866327_866747_+	6-carboxytetrahydropterin synthase QueD	S4U060	uncultured_phage	6.3e-07	28.7
QBB18004.1\|866750_867464_+	7-carboxy-7-deazaguanine synthase QueE	A0A1U9WRB6	Streptococcus_virus	9.3e-51	42.7
QBB18005.1\|867562_868147_+	hypothetical protein	NA	NA	NA	NA
QBB18006.1\|868426_868867_+	hypothetical protein	NA	NA	NA	NA
QBB18007.1\|869206_869680_+	DoxX family membrane protein	NA	NA	NA	NA
QBB18008.1\|869654_870341_+	response regulator transcription factor	NA	NA	NA	NA
QBB18009.1\|870340_871396_+	HAMP domain-containing histidine kinase	A0A1V0SGX0	Hokovirus	3.6e-14	29.8

DBSCAN-SWA_6

2332913 : 2415589

Staphylococcus_phage(91.04%)

protease,portal,capsid,terminase,integrase,tail,holin,head,transposase

attL 2346769:2346786|attR 2369759:2369776

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB19299.1\|2332913_2333657_-\|protease	CPBP family intramembrane metalloprotease	NA	NA	NA	NA
QBB19300.1\|2333833_2334118_+	co-chaperone GroES	A0A221S386	uncultured_virus	4.7e-14	46.2
QBB19301.1\|2334193_2335810_+	chaperonin GroEL	A0A240F779	uncultured_virus	5.8e-157	54.7
QBB19302.1\|2336511_2336724_+	pathogenicity island family protein	Q4ZE86	Staphylococcus_phage	1.1e-23	74.3
QBB19303.1\|2336720_2337311_+\|terminase	terminase small subunit	Q4ZE85	Staphylococcus_phage	1.2e-96	94.7
QBB19850.1\|2337627_2338065_+	hypothetical protein	NA	NA	NA	NA
QBB19304.1\|2338170_2338614_+	GNAT family N-acetyltransferase	NA	NA	NA	NA
QBB19305.1\|2339456_2340764_-	TrkH family potassium uptake protein	NA	NA	NA	NA
QBB19306.1\|2340924_2341836_+	iron-hydroxamate ABC transporter substrate-binding protein	NA	NA	NA	NA
QBB19307.1\|2341897_2342743_+	class I SAM-dependent methyltransferase	NA	NA	NA	NA
QBB19308.1\|2343114_2344338_-	ArgE/DapE family deacylase	NA	NA	NA	NA
QBB19309.1\|2344772_2345825_+	bi-component leukocidin LukGH subunit H	A0A2I6PDF3	Staphylococcus_phage	1.3e-35	32.1
QBB19310.1\|2345846_2346863_+	bi-component leukocidin LukGH subunit G	A0A2I6PER8	Staphylococcus_phage	3.9e-26	29.3
2346769:2346786	attL	NA	NA	NA	NA
QBB19311.1\|2347981_2349019_-\|integrase	site-specific integrase	A7TWL3	Staphylococcus_phage	3.4e-179	100.0
QBB19312.1\|2349739_2349886_-	hypothetical protein	A0A2I6PEK8	Staphylococcus_phage	1.1e-14	89.6
QBB19313.1\|2349921_2350104_-	hypothetical protein	A0A2I6PDF8	Staphylococcus_phage	6.9e-27	100.0
QBB19314.1\|2350303_2351074_-	helix-turn-helix domain-containing protein	A0A1P8L6G7	Staphylococcus_phage	6.2e-141	100.0
QBB19315.1\|2351232_2351457_+	DUF739 family protein	A7TW90	Staphylococcus_phage	4.5e-36	100.0
QBB19316.1\|2351474_2351735_+	transcriptional regulator	A7TW91	Staphylococcus_phage	2.7e-40	100.0
QBB19317.1\|2352352_2353105_+	oxidoreductase	G4KNN1	Staphylococcus_phage	3.3e-139	99.2
QBB19318.1\|2353348_2353489_+	hypothetical protein	A0A2I6PDG0	Staphylococcus_phage	1.9e-16	100.0
QBB19319.1\|2353503_2354136_-	hypothetical protein	A7TW95	Staphylococcus_phage	1.5e-113	100.0
QBB19320.1\|2354194_2354515_+	DUF771 domain-containing protein	A0A2I6PDH6	Staphylococcus_phage	1.5e-56	100.0
QBB19321.1\|2354511_2354673_+	DUF1270 family protein	A0A2I6PDF7	Staphylococcus_phage	7.2e-20	98.1
QBB19322.1\|2354765_2355026_+	DUF1108 family protein	A0A2I6PDH1	Staphylococcus_phage	2.6e-43	100.0
QBB19323.1\|2355034_2355298_+	hypothetical protein	A0A2I6PDG2	Staphylococcus_phage	7.7e-43	100.0
QBB19324.1\|2355306_2357250_+	ATPase	A0A2I6PDH3	Staphylococcus_phage	0.0e+00	100.0
QBB19325.1\|2357251_2358172_+	recombinase	A0A2I6PDH5	Staphylococcus_phage	2.3e-166	100.0
QBB19326.1\|2358237_2358870_+	MBL fold metallo-hydrolase	A0A2I6PDI9	Staphylococcus_phage	9.4e-87	100.0
QBB19327.1\|2358870_2359341_+	single-stranded DNA-binding protein	A0A2I6PDH4	Staphylococcus_phage	5.7e-81	100.0
QBB19328.1\|2359370_2360264_+	DnaD domain protein	A0A2I6PDG7	Staphylococcus_phage	8.4e-142	100.0
QBB19329.1\|2360270_2360489_+	hypothetical protein	A0A2I6PDG4	Staphylococcus_phage	1.0e-37	100.0
QBB19330.1\|2360497_2360902_+	RusA family crossover junction endodeoxyribonuclease	A0A2I6PDI7	Staphylococcus_phage	8.4e-73	100.0
QBB19331.1\|2360914_2361286_+	hypothetical protein	A0A2I6PDG3	Staphylococcus_phage	2.7e-57	100.0
QBB19332.1\|2361286_2361535_+	hypothetical protein	A0A2I6PDI0	Staphylococcus_phage	3.2e-43	100.0
QBB19333.1\|2361599_2362049_+	hypothetical protein	A0A2I6PDH2	Staphylococcus_phage	9.3e-81	100.0
QBB19334.1\|2362045_2362330_+	hypothetical protein	A0A2I6PDI3	Staphylococcus_phage	9.4e-47	100.0
QBB19335.1\|2362322_2362577_+	DUF1024 family protein	A0A2I6PDI5	Staphylococcus_phage	6.5e-39	100.0
QBB19851.1\|2362696_2362897_+	DUF1514 domain-containing protein	A0A2I6PDJ9	Staphylococcus_phage	1.4e-28	100.0
QBB19336.1\|2362924_2363341_+	transcriptional regulator	G4KNP7	Staphylococcus_phage	1.3e-76	100.0
QBB19337.1\|2363572_2363872_+	HNH endonuclease	A0A2I6PDH9	Staphylococcus_phage	3.5e-52	100.0
QBB19338.1\|2364002_2364347_+	hypothetical protein	G4KNP9	Staphylococcus_phage	9.4e-57	100.0
QBB19339.1\|2366019_2367207_+\|portal	phage portal protein	A0A2I6PDI1	Staphylococcus_phage	1.0e-219	100.0
QBB19340.1\|2367190_2367928_+\|protease	Clp protease ClpP	G4KNQ2	Staphylococcus_phage	1.8e-129	100.0
QBB19341.1\|2367951_2369097_+\|capsid	phage major capsid protein	A0A1X9H072	Staphylococcus_phage	5.6e-215	100.0
QBB19342.1\|2369116_2369401_+	hypothetical protein	A0A2I6PDJ3	Staphylococcus_phage	1.8e-45	100.0
QBB19343.1\|2369390_2369675_+\|head,tail	phage head-tail adapter protein	A0A2I6PDJ5	Staphylococcus_phage	2.3e-45	100.0
QBB19344.1\|2369658_2370021_+\|head,tail	phage head-tail adapter protein	G4KNQ4	Staphylococcus_phage	4.4e-65	100.0
2369759:2369776	attR	NA	NA	NA	NA
QBB19345.1\|2370017_2370422_+	hypothetical protein	A0A2I6PDJ6	Staphylococcus_phage	4.3e-69	100.0
QBB19346.1\|2370418_2370826_+	hypothetical protein	G4KNQ6	Staphylococcus_phage	7.1e-72	100.0
QBB19347.1\|2370826_2371471_+\|tail	phage tail protein	A0A2I6PDI6	Staphylococcus_phage	1.1e-119	100.0
QBB19348.1\|2371512_2371737_+	hypothetical protein	A0A075LYE8	Staphylococcus_phage	3.0e-32	100.0
QBB19349.1\|2371786_2372137_+	hypothetical protein	G4KNQ8	Staphylococcus_phage	7.8e-59	100.0
QBB19350.1\|2372381_2376911_+\|tail	phage tail tape measure protein	A0A2I6PDK2	Staphylococcus_phage	0.0e+00	99.9
QBB19351.1\|2376907_2378392_+\|tail	phage tail protein	A0A2I6PDJ0	Staphylococcus_phage	1.2e-297	100.0
QBB19352.1\|2382181_2382334_+	hypothetical protein	D2JLG0	Staphylococcus_phage	5.2e-20	100.0
QBB19353.1\|2382380_2382668_+	hypothetical protein	D2JLG1	Staphylococcus_phage	1.3e-43	100.0
QBB19354.1\|2382725_2383022_+	DUF2951 domain-containing protein	D2JLG2	Staphylococcus_phage	2.9e-46	100.0
QBB19355.1\|2383173_2383350_+\|holin	putative holin-like toxin	D2JLG3	Staphylococcus_phage	6.5e-22	96.6
QBB19356.1\|2383402_2383510_-	hypothetical protein	NA	NA	NA	NA
QBB19357.1\|2383561_2383816_+\|holin	phage holin	D2JLG4	Staphylococcus_phage	4.1e-41	100.0
QBB19358.1\|2383827_2384583_+	CHAP domain-containing protein	D2JLG5	Staphylococcus_phage	3.4e-152	100.0
QBB19359.1\|2384773_2385265_+	staphylokinase	A7TWR8	Staphylococcus_phage	8.0e-86	100.0
QBB19360.1\|2385711_2385867_-	amidase	NA	NA	NA	NA
QBB19361.1\|2385793_2386048_+	amidase	Q4ZCK0	Staphylococcus_virus	3.4e-11	90.7
QBB19362.1\|2386342_2386792_-	chemotaxis-inhibiting protein CHIPS	A7TWR9	Staphylococcus_phage	1.5e-78	100.0
QBB19363.1\|2387473_2387824_+	inhibitor	A7TWS0	Staphylococcus_phage	7.5e-54	100.0
QBB19364.1\|2387876_2388137_-	hypothetical protein	M9NS66	Staphylococcus_phage	2.3e-23	100.0
QBB19365.1\|2388115_2388424_-	hypothetical protein	M9NTD8	Staphylococcus_phage	9.3e-24	77.5
QBB19366.1\|2388447_2388627_-	hypothetical protein	A0A1W6JQ29	Staphylococcus_phage	2.2e-25	100.0
QBB19367.1\|2388998_2389199_-	hypothetical protein	A0A1P8L6A7	Staphylococcus_phage	1.0e-26	98.5
QBB19368.1\|2389584_2391633_+	MAP domain-containing protein	NA	NA	NA	NA
QBB19369.1\|2391911_2393198_-	aminotransferase class I/II-fold pyridoxal phosphate-dependent enzyme	NA	NA	NA	NA
QBB19370.1\|2393397_2393496_+	hypothetical protein	NA	NA	NA	NA
QBB19371.1\|2393738_2393897_+	hypothetical protein	NA	NA	NA	NA
QBB19372.1\|2394173_2394554_+	GntR family transcriptional regulator	NA	NA	NA	NA
QBB19373.1\|2394550_2395447_+	phenol-soluble modulin export ABC transporter ATP-binding protein PmtA	A0A2H4PQG7	Staphylococcus_phage	6.5e-17	30.2
QBB19374.1\|2395447_2396128_+	phenol-soluble modulin export ABC transporter permease subunit PmtB	NA	NA	NA	NA
QBB19375.1\|2396995_2397736_+	phenol-soluble modulin export ABC transporter permease subunit PmtD	NA	NA	NA	NA
QBB19376.1\|2397801_2398365_-	thioredoxin family protein	NA	NA	NA	NA
QBB19377.1\|2398485_2399010_+	hypothetical protein	NA	NA	NA	NA
QBB19378.1\|2399069_2399627_+	DUF1700 domain-containing protein	NA	NA	NA	NA
QBB19379.1\|2399623_2400466_+	hypothetical protein	NA	NA	NA	NA
QBB19380.1\|2400522_2401563_-	linear amide C-N hydrolase	NA	NA	NA	NA
QBB19381.1\|2402013_2402187_+	hypothetical protein	NA	NA	NA	NA
QBB19382.1\|2405911_2406277_+\|transposase	transposase	NA	NA	NA	NA
QBB19383.1\|2406305_2406725_-	YolD-like family protein	U3PG23	Staphylococcus_phage	1.1e-30	54.2
QBB19384.1\|2408928_2409774_-	penicillin-hydrolyzing class A beta-lactamase BlaZ	A0A1B0VBP7	Salmonella_phage	3.4e-31	34.3
QBB19385.1\|2410433_2411078_-	AAA family ATPase	A0A059NT77	Lactococcus_phage	4.6e-49	46.6
QBB19386.1\|2413821_2414202_+	penicillinase repressor BlaI	NA	NA	NA	NA
QBB19387.1\|2414476_2415589_+\|transposase	transposase	P97010	Streptococcus_pyogenes_phage	8.7e-11	31.0

DBSCAN-SWA_7

2554516 : 2570953

Staphylococcus_phage(100.0%)

transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB19503.1\|2554516_2554621_+	hypothetical protein	A0A2H4PQU1	Staphylococcus_phage	7.2e-05	87.5
QBB19504.1\|2554794_2555019_+\|transposase	transposase	A0A2H4PQV6	Staphylococcus_phage	6.8e-24	86.8
QBB19505.1\|2555200_2555584_+	hypothetical protein	NA	NA	NA	NA
QBB19506.1\|2555594_2555771_+	hypothetical protein	NA	NA	NA	NA
QBB19507.1\|2556142_2556712_+	ImmA/IrrE family metallo-endopeptidase	A0A2H4PQN8	Staphylococcus_phage	1.2e-77	95.0
QBB19508.1\|2556908_2557481_-	hypothetical protein	A0A2H4PQN4	Staphylococcus_phage	7.8e-24	93.1
QBB19509.1\|2557581_2557923_-	DUF3969 family protein	A0A2H4PQN6	Staphylococcus_phage	7.3e-54	92.0
QBB19510.1\|2557963_2558590_-	hypothetical protein	A0A2H4PQM7	Staphylococcus_phage	6.4e-88	91.8
QBB19511.1\|2558665_2559661_-	DUF4352 domain-containing protein	A0A2H4PQN2	Staphylococcus_phage	1.9e-70	95.2
QBB19512.1\|2559741_2560392_-	calcium-binding protein	A0A2H4PQM8	Staphylococcus_phage	4.8e-54	92.6
QBB19855.1\|2560693_2561149_+	DUF4909 domain-containing protein	A0A2H4PQN7	Staphylococcus_phage	3.6e-80	99.3
QBB19513.1\|2561307_2562786_+	o-succinylbenzoate--CoA ligase	A0A2H4PQM9	Staphylococcus_phage	1.6e-283	97.6
QBB19514.1\|2562790_2563792_+	o-succinylbenzoate synthase	A0A2H4PQM0	Staphylococcus_phage	2.8e-186	97.9
QBB19515.1\|2563788_2564046_-	membrane protein insertion efficiency factor YidD	A0A2H4PQM5	Staphylococcus_phage	2.0e-40	90.6
QBB19516.1\|2564111_2564585_+	nucleoside triphosphatase YtkD	A0A2H4PQM4	Staphylococcus_phage	3.6e-83	98.1
QBB19856.1\|2564589_2565336_+	S9 family peptidase	A0A2H4PQM6	Staphylococcus_phage	7.8e-141	97.6
QBB19517.1\|2565713_2567306_-	phosphoenolpyruvate carboxykinase (ATP)	A0A2H4PQN1	Staphylococcus_phage	0.0e+00	99.8
QBB19518.1\|2567676_2568870_+	methionine adenosyltransferase	A0A2H4PQS6	Staphylococcus_phage	2.2e-217	99.5
QBB19519.1\|2568994_2569903_+	NERD domain-containing protein	A0A2H4PQQ8	Staphylococcus_phage	2.9e-137	98.7
QBB19520.1\|2570119_2570953_+	aldo/keto reductase	A0A2H4PQR8	Staphylococcus_phage	6.0e-158	99.3

DBSCAN-SWA_8

2583681 : 2592685

Staphylococcus_phage(100.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB19532.1\|2583681_2584077_-	arsenate reductase (thioredoxin)	A0A2H4PQT9	Staphylococcus_phage	4.5e-71	96.9
QBB19533.1\|2584094_2585387_-	arsenic transporter	A0A2H4PQU3	Staphylococcus_phage	7.5e-216	94.2
QBB19534.1\|2585386_2585701_-	ArsR family transcriptional regulator	A0A2H4PQT4	Staphylococcus_phage	1.3e-52	98.1
QBB19535.1\|2586227_2587730_+	pyridine nucleotide-disulfide oxidoreductase	A0A2H4PQX2	Staphylococcus_phage	2.3e-30	100.0
QBB19858.1\|2588222_2589254_+	bifunctional diaminohydroxyphosphoribosylaminopyrimidine deaminase/5-amino-6-(5-phosphoribosylamino)uracil reductase RibD	A0A2H4PQS8	Staphylococcus_phage	4.0e-196	98.8
QBB19536.1\|2589260_2589893_+	riboflavin synthase	A0A2H4PQS5	Staphylococcus_phage	1.7e-112	99.5
QBB19537.1\|2589903_2591085_+	3,4-dihydroxy-2-butanone-4-phosphate synthase	A0A2H4PQS2	Staphylococcus_phage	1.7e-227	100.0
QBB19538.1\|2591097_2591562_+	6,7-dimethyl-8-ribityllumazine synthase	A0A2H4PQS3	Staphylococcus_phage	5.8e-70	99.4
QBB19539.1\|2591683_2592685_-	proline dehydrogenase	A0A2H4PQT6	Staphylococcus_phage	9.0e-185	99.7

DBSCAN-SWA_9

2598043 : 2610782

Staphylococcus_phage(100.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB19544.1\|2598043_2598607_-	methyltransferase domain-containing protein	A0A2H4PQV0	Staphylococcus_phage	2.2e-103	100.0
QBB19545.1\|2598603_2599557_-	TIGR01212 family radical SAM protein	A0A2H4PQV5	Staphylococcus_phage	2.2e-79	100.0
QBB19546.1\|2599667_2600849_+	MFS transporter	A0A2H4PQR6	Staphylococcus_phage	7.3e-218	99.7
QBB19547.1\|2601136_2603554_+\|tRNA	leucine--tRNA ligase	A0A2H4PQS0	Staphylococcus_phage	0.0e+00	99.3
QBB19548.1\|2603575_2603887_+	rhodanese-like domain-containing protein	A0A2H4PQR9	Staphylococcus_phage	1.6e-52	100.0
QBB19549.1\|2604212_2610782_+	DUF1542 domain-containing protein	A0A2H4PQU6	Staphylococcus_phage	1.9e-294	92.6

DBSCAN-SWA_10

2733575 : 2742615

uncultured_Mediterranean_phage(50.0%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB19658.1\|2733575_2734580_+	Holliday junction branch migration DNA helicase RuvB	B3GAM6	uncultured_virus	1.7e-05	29.1
QBB19659.1\|2734581_2735607_+\|tRNA	tRNA preQ1(34) S-adenosylmethionine ribosyltransferase-isomerase QueA	NA	NA	NA	NA
QBB19660.1\|2735629_2736769_+\|tRNA	tRNA guanosine(34) transglycosylase Tgt	A0A1B1IVQ4	uncultured_Mediterranean_phage	5.4e-85	44.7
QBB19661.1\|2736787_2737048_+	preprotein translocase subunit YajC	A0A1B1IVR5	uncultured_Mediterranean_phage	8.2e-05	35.3
QBB19662.1\|2737319_2739599_+	protein translocase subunit SecDF	A0A1B1IVP7	uncultured_Mediterranean_phage	1.8e-31	35.8
QBB19663.1\|2739801_2742075_+	single-stranded-DNA-specific exonuclease RecJ	A7KV88	Bacillus_phage	3.1e-63	29.0
QBB19664.1\|2742096_2742615_+	adenine phosphoribosyltransferase	A0A1V0SKE5	Klosneuvirus	5.6e-29	46.5

DBSCAN-SWA_11

2814145 : 2822475

Caulobacter_phage(16.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBB19727.1\|2814145_2815963_+	DNA primase	A0A0K1LMQ9	Caulobacter_phage	7.9e-54	36.3
QBB19728.1\|2816186_2817293_+	RNA polymerase sigma factor RpoD	A0A2I7SAT0	Vibrio_phage	1.1e-37	38.1
QBB19729.1\|2817423_2818101_+\|tRNA	tRNA (adenine-N(1))-methyltransferase	NA	NA	NA	NA
QBB19730.1\|2818103_2819204_+	Nif3-like dinuclear metal center hexameric protein	A0A1S5V250	Saudi_moumouvirus	5.2e-08	29.6
QBB19731.1\|2819317_2820664_+	DEAD/DEAH box helicase	A0A1V0SIR5	Klosneuvirus	9.1e-55	33.7
QBB19732.1\|2820673_2821564_+	deoxyribonuclease IV	A0A2H4UU70	Bodo_saltans_virus	2.0e-26	33.1
QBB19733.1\|2821689_2822475_+	metal ABC transporter ATP-binding protein	A0A2H4PQG7	Staphylococcus_phage	8.0e-19	28.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP035671

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection