CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP035713	Zymomonas mobilis strain ER79ag chromosome, complete genome	4 crisprs	NA	1	5	0	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP035713_1

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035713_1

113783-114170

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CRT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	PILER-CR

6 spacers

The CRISPR arrays of CP035713_1

>merge|CP035713|1|113783-114170|CRT,PILER-CR
ATTTGATGCTGCCTGTGCGGCAGTGAACATACCGAGAACGATTATTGCCCGTAGTGTAAATTTCTAAGCTGCCTGTGCGGCAGTGAACGTTTGCTGCCATAAAATGCTCCTGCCGTGCAATTTCTAAGCTGCCTATGCGGCAGTGAACTGAAAAAGGGTGACCCTATCAAAGTAGGGGCTTTTCTAAGCTGCCTATGCGGCAGTGAACCAAAACTGTCATATCGTAGCTAATATCTTCACTTTCTAAGCTGCCTATGCGGCAGTGAACACAGCTAAAACCCTTTTACCTTTACTGTCGGCTTTCTAAGCTGCCTATGCGGCAGTGAACTGAAAAAGGGTGACCCTATCAAAGTAGGGGCTTTTCTAAGCTGCCTATGCGGCAGTGAAC

>CP035713|1|1|113783-114170|CRT
ATTTGATGCTGCCTGTGCGGCAGTGAAC	ATACCGAGAACGATTATTGCCCGTAGTGTAAA
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTTGCTGCCATAAAATGCTCCTGCCGTGCAA
TTTCTAAGCTGCCTATGCGGCAGTGAAC	TGAAAAAGGGTGACCCTATCAAAGTAGGGGCT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CAAAACTGTCATATCGTAGCTAATATCTTCAC
TTTCTAAGCTGCCTATGCGGCAGTGAAC	ACAGCTAAAACCCTTTTACCTTTACTGTCGGC
TTTCTAAGCTGCCTATGCGGCAGTGAAC	TGAAAAAGGGTGACCCTATCAAAGTAGGGGCT
TTTCTAAGCTGCCTATGCGGCAGTGAAC

>CP035713|1|1|113843-114170|PILER-CR
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	GTTTGCTGCCATAAAATGCTCCTGCCGTGCAA
TTTCTAAGCTGCCTATGCGGCAGTGAAC	TGAAAAAGGGTGACCCTATCAAAGTAGGGGCT
TTTCTAAGCTGCCTATGCGGCAGTGAAC	CAAAACTGTCATATCGTAGCTAATATCTTCAC
TTTCTAAGCTGCCTATGCGGCAGTGAAC	ACAGCTAAAACCCTTTTACCTTTACTGTCGGC
TTTCTAAGCTGCCTATGCGGCAGTGAAC	TGAAAAAGGGTGACCCTATCAAAGTAGGGGCT
TTTCTAAGCTGCCTATGCGGCAGTGAAC

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Crispr_ID: CP035713_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035713_2

1242953-1243464

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

8 spacers

The CRISPR arrays of CP035713_2

>merge|CP035713|2|1242953-1243464|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAATAGCAGTGCCAGTGCTATCAAGAAAGAAATCCGTTCACTGCCGCACAGGCAGCTTAGAAAAGATGGAACAAATGTGTGGTGGGAAAATACTTTGTTCACTGCCGCACAGGCAGCTTAGAAACCGTGCGTCATAGACACCGGAAGGTGCGCCGTGTTCACTGCCGCACAGGCAGCTTAGAAATTCTCAAAAAGGAAAAGAAATTGGAACAGATTGTTCACTGCCGCACAGGCAGCTTAGAAAGTCGAATAATTTTAAGCGTGAACCCGTATCAGGTTCACTGCCGCACAGGCAGCTTAGAAAATCGAACTGCGTGCCTGATAGCCGATACGCTGAGTTCACTGCCGCACAGGCAGCTTAGAAAGATCGCGGGCAACGGTTTATTCAGCTATCCGCGCGTTCACTGCCGCACAGGCAGCTTAGAAAATTTCGTCAGTGTCCGGAGAAACGCCCGTCAGGTTCACTGCCGCGCAGGCAGTTGCTTAG

>CP035713|2|2|1242953-1243404|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAGCAGTGCCAGTGCTATCAAGAAAGAAATCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGATGGAACAAATGTGTGGTGGGAAAATACTTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGTGCGTCATAGACACCGGAAGGTGCGCCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCTCAAAAAGGAAAAGAAATTGGAACAGATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCGAATAATTTTAAGCGTGAACCCGTATCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCGAACTGCGTGCCTGATAGCCGATACGCTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATCGCGGGCAACGGTTTATTCAGCTATCCGCGC
GTTCACTGCCGCACAGGCAGCTTAGAAA

>CP035713|2|1|1242953-1243464|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAGCAGTGCCAGTGCTATCAAGAAAGAAATCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGATGGAACAAATGTGTGGTGGGAAAATACTTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGTGCGTCATAGACACCGGAAGGTGCGCCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCTCAAAAAGGAAAAGAAATTGGAACAGATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCGAATAATTTTAAGCGTGAACCCGTATCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCGAACTGCGTGCCTGATAGCCGATACGCTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATCGCGGGCAACGGTTTATTCAGCTATCCGCGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTCGTCAGTGTCCGGAGAAACGCCCGTCAG
GTTCACTGCCGCGCAGGCAGTTGCTTAG

>CP035713|2|2|1242953-1243464|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TAGCAGTGCCAGTGCTATCAAGAAAGAAATCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	AGATGGAACAAATGTGTGGTGGGAAAATACTTT
GTTCACTGCCGCACAGGCAGCTTAGAAA	CCGTGCGTCATAGACACCGGAAGGTGCGCCGT
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTCTCAAAAAGGAAAAGAAATTGGAACAGATT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCGAATAATTTTAAGCGTGAACCCGTATCAG
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCGAACTGCGTGCCTGATAGCCGATACGCTGA
GTTCACTGCCGCACAGGCAGCTTAGAAA	GATCGCGGGCAACGGTTTATTCAGCTATCCGCGC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATTTCGTCAGTGTCCGGAGAAACGCCCGTCAG
GTTCACTGCCGCGCAGGCAGTTGCTTAG

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Crispr_ID: CP035713_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035713_4

1590915-1591003

Orphan

I-F

Consensus_repeat	Method
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP035713_4

>merge|CP035713|4|1590915-1591003|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAAATCCGCAATTTCTGGAACATGATCTTGCTGACTGTTCACTGCCGCATAGGCAGATTGTACT

>CP035713|4|3|1590915-1591003|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCCGCAATTTCTGGAACATGATCTTGCTGACT
GTTCACTGCCGCATAGGCAGATTGTACT

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Crispr_ID: CP035713_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP035713_3

1590354-1590745

Orphan

I-F

Consensus_repeat	Method
TTTCTAAGCTGCCTGTGCGGCAGTGAAC	PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	CRT

6 spacers

The CRISPR arrays of CP035713_3

>merge|CP035713|3|1590354-1590745|PILER-CR,CRISPRCasFinder,CRT
GTTCACTGCCGCACAGGCAGCTTAGAAAGCGCATCTTCTGATGCTTTTTTAGCTGCGGCCGTTCACTGCCGCACAGGCAGCTTAGAAATTGACGCTGTGAGCGTGACGATATGCTTTCACGTTCACTGCCGCACAGGCAGCTTAGAAAATCGGGGCATAAAATAGCGACTTGCTCACCGATGTTCACTGCCGCACAGGCAGCTTAGAAAGTCTGGCTGAAATGAGGTCCGACGATTTGCATGTTCACTGCCGCACAGGCAGCTTAGAAAACCCCTCTTGGTAGTCGTATCTGCAGACGCAATGTTCACTGCCGCACAGGCAGCTTAGAAAATATAGAAGATTTATCAGATACGTTGAGAATAAGTTCACTGCCGCACAGGCAGCTTAGAAAA

>CP035713|3|3|1590354-1590683|PILER-CR
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCGCATCTTCTGATGCTTTTTTAGCTGCGGCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGACGCTGTGAGCGTGACGATATGCTTTCAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCGGGGCATAAAATAGCGACTTGCTCACCGAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCTGGCTGAAATGAGGTCCGACGATTTGCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACCCCTCTTGGTAGTCGTATCTGCAGACGCAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA

>CP035713|3|2|1590354-1590745|CRISPRCasFinder
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCGCATCTTCTGATGCTTTTTTAGCTGCGGCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGACGCTGTGAGCGTGACGATATGCTTTCAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCGGGGCATAAAATAGCGACTTGCTCACCGAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCTGGCTGAAATGAGGTCCGACGATTTGCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACCCCTCTTGGTAGTCGTATCTGCAGACGCAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATATAGAAGATTTATCAGATACGTTGAGAATAA
GTTCACTGCCGCACAGGCAGCTTAGAAAA

>CP035713|3|3|1590354-1590744|CRT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GCGCATCTTCTGATGCTTTTTTAGCTGCGGCC
GTTCACTGCCGCACAGGCAGCTTAGAAA	TTGACGCTGTGAGCGTGACGATATGCTTTCAC
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATCGGGGCATAAAATAGCGACTTGCTCACCGAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	GTCTGGCTGAAATGAGGTCCGACGATTTGCAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ACCCCTCTTGGTAGTCGTATCTGCAGACGCAAT
GTTCACTGCCGCACAGGCAGCTTAGAAA	ATATAGAAGATTTATCAGATACGTTGAGAATAA
GTTCACTGCCGCACAGGCAGCTTAGAAA

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity
CP035713_2	2.6\|1243282\|33\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1243282-1243314	33	CP035713.1	290929-290961	1	0.97

1. spacer 2.6|1243282|33|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to position: 290929-290961, mismatch: 1, identity: 0.97

atcgaactgcgtgcctgatagccgatacgctga	CRISPR spacer
atcgaactacgtgcctgatagccgatacgctga	Protospacer
********.************************

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP035713_3	3.2\|1590442\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590442-1590473	32	NZ_CP021792	Zymomonas mobilis subsp. mobilis strain NRRL B-1960 plasmid pZMO1960_1A, complete sequence	1418-1449	0	1.0
CP035713_3	3.2\|1590442\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590442-1590473	32	NC_019198	Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZMO1A, complete sequence	1479-1510	0	1.0
CP035713_3	3.2\|1590442\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590442-1590473	32	NC_019210	Zymomonas mobilis subsp. mobilis plasmid pZMO1B, complete sequence	1479-1510	0	1.0
CP035713_3	3.2\|1590442\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590442-1590473	32	NC_011363	Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMO1, complete sequence	1482-1513	1	0.969
CP035713_3	3.6\|1590684\|33\|CP035713\|CRISPRCasFinder,CRT	1590684-1590716	33	NC_001845	Zymomonas mobilis ATCC10988 plasmid pZMO1, complete sequence	653-685	1	0.97
CP035713_3	3.6\|1590684\|33\|CP035713\|CRISPRCasFinder,CRT	1590684-1590716	33	NC_009716	Escherichia sp. Sflu5 cryptic plasmid pAK51	3617-3649	1	0.97
CP035713_3	3.6\|1590684\|33\|CP035713\|CRISPRCasFinder,CRT	1590684-1590716	33	NC_005701	Zymomonas mobilis ATCC 10988 plasmid pZMO2, complete sequence	8-40	1	0.97
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	NC_013784	Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence	12257-12288	2	0.938
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	NZ_CP003712	Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence	22552-22583	2	0.938
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	NZ_CP003718	Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence	12257-12288	2	0.938
CP035713_3	3.2\|1590442\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590442-1590473	32	NC_019019	Zymomonas mobilis plasmid pZMN1-1, complete sequence	1475-1506	2	0.938
CP035713_3	3.2\|1590442\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590442-1590473	32	NC_009716	Escherichia sp. Sflu5 cryptic plasmid pAK51	4439-4470	4	0.875
CP035713_3	3.2\|1590442\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590442-1590473	32	NC_001845	Zymomonas mobilis ATCC10988 plasmid pZMO1, complete sequence	1513-1544	4	0.875
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	MK448979	Streptococcus phage Javan534, complete genome	13215-13246	7	0.781
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	MK448799	Streptococcus phage Javan535, complete genome	13215-13246	7	0.781
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	MK448800	Streptococcus phage Javan539, complete genome	13216-13247	7	0.781
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	MT939241	Enterococcus phage 9183, complete genome	69460-69491	7	0.781
CP035713_1	1.5\|114051\|32\|CP035713\|CRT,PILER-CR	114051-114082	32	NZ_CP018236	Rhizobium leguminosarum strain Vaf-108 plasmid unnamed8	109921-109952	8	0.75
CP035713_2	2.4\|1243162\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1243162-1243193	32	NZ_LR214998	Mycoplasma conjunctivae strain NCTC10147 plasmid 2	1218-1249	8	0.75
CP035713_2	2.4\|1243162\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1243162-1243193	32	NZ_CP049042	Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_5, complete sequence	37299-37330	8	0.75
CP035713_2	2.4\|1243162\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1243162-1243193	32	NZ_CP049700	Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence	291573-291604	8	0.75
CP035713_3	3.2\|1590442\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590442-1590473	32	CP053324	Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence	9447-9478	8	0.75
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	MT446411	UNVERIFIED: Escherichia virus TH40, complete genome	67504-67535	9	0.719
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	MT446421	UNVERIFIED: Escherichia virus TH55, complete genome	80840-80871	9	0.719
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	MT446396	UNVERIFIED: Escherichia virus TH22, complete genome	137515-137546	9	0.719
CP035713_2	2.4\|1243162\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1243162-1243193	32	MN692951	Marine virus AFVG_117M12, complete genome	19672-19703	10	0.688
CP035713_2	2.4\|1243162\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1243162-1243193	32	NC_019526	Enterobacteria phage vB_KleM-RaK2, complete genome	67317-67348	10	0.688
CP035713_2	2.4\|1243162\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1243162-1243193	32	MT708547	Klebsiella phage Muenster, complete genome	189204-189235	10	0.688
CP035713_2	2.4\|1243162\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1243162-1243193	32	AB897757	Klebsiella phage K64-1 DNA, complete genome	67288-67319	10	0.688
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	NC_020292	Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence	13543-13574	10	0.688
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	MN583270	Pseudomonas aeruginosa strain NK546 plasmid pNK546b, complete sequence	67159-67190	10	0.688
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	MF360958	Salicola phage SCTP-2, complete genome	175798-175829	10	0.688
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	JN231330	UNVERIFIED: Uncultured phage contig03 MexF-like gene, complete sequence	1910-1941	10	0.688
CP035713_2	2.4\|1243162\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1243162-1243193	32	KY549443	Enterococcus phage EFP01, complete genome	110490-110521	11	0.656
CP035713_3	3.1\|1590382\|32\|CP035713\|PILER-CR,CRISPRCasFinder,CRT	1590382-1590413	32	AP013403	Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S41-C7	29040-29071	11	0.656

1. spacer 3.2|1590442|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021792 (Zymomonas mobilis subsp. mobilis strain NRRL B-1960 plasmid pZMO1960_1A, complete sequence) position: , mismatch: 0, identity: 1.0

ttgacgctgtgagcgtgacgatatgctttcac	CRISPR spacer
ttgacgctgtgagcgtgacgatatgctttcac	Protospacer
********************************

2. spacer 3.2|1590442|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NC_019198 (Zymomonas mobilis subsp. mobilis NCIMB 11163 plasmid pZMO1A, complete sequence) position: , mismatch: 0, identity: 1.0

ttgacgctgtgagcgtgacgatatgctttcac	CRISPR spacer
ttgacgctgtgagcgtgacgatatgctttcac	Protospacer
********************************

3. spacer 3.2|1590442|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NC_019210 (Zymomonas mobilis subsp. mobilis plasmid pZMO1B, complete sequence) position: , mismatch: 0, identity: 1.0

ttgacgctgtgagcgtgacgatatgctttcac	CRISPR spacer
ttgacgctgtgagcgtgacgatatgctttcac	Protospacer
********************************

4. spacer 3.2|1590442|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NC_011363 (Zymomonas mobilis subsp. mobilis ATCC 10988 plasmid pZMO1, complete sequence) position: , mismatch: 1, identity: 0.969

ttgacgctgtgagcgtgacgatatgctttcac	CRISPR spacer
ttgacgctgtgagcgtgacgatatgctttcgc	Protospacer
******************************.*

5. spacer 3.6|1590684|33|CP035713|CRISPRCasFinder,CRT matches to NC_001845 (Zymomonas mobilis ATCC10988 plasmid pZMO1, complete sequence) position: , mismatch: 1, identity: 0.97

atatagaagatttatcagatacgttgagaataa	CRISPR spacer
atatagaagatttgtcagatacgttgagaataa	Protospacer
*************.*******************

6. spacer 3.6|1590684|33|CP035713|CRISPRCasFinder,CRT matches to NC_009716 (Escherichia sp. Sflu5 cryptic plasmid pAK51) position: , mismatch: 1, identity: 0.97

atatagaagatttatcagatacgttgagaataa	CRISPR spacer
atatagaagatttgtcagatacgttgagaataa	Protospacer
*************.*******************

7. spacer 3.6|1590684|33|CP035713|CRISPRCasFinder,CRT matches to NC_005701 (Zymomonas mobilis ATCC 10988 plasmid pZMO2, complete sequence) position: , mismatch: 1, identity: 0.97

atatagaagatttatcagatacgttgagaataa	CRISPR spacer
atatagaagatttgtcagatacgttgagaataa	Protospacer
*************.*******************

8. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NC_013784 (Zymomonas mobilis subsp. mobilis ZM4 plasmid pZZM401, complete sequence) position: , mismatch: 2, identity: 0.938

gcgcatcttctgatgcttttttagctgcggcc	CRISPR spacer
gcgcttcttctgctgcttttttagctgcggcc	Protospacer
**** ******* *******************

9. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003712 (Zymomonas mobilis subsp. mobilis NRRL B-12526 plasmid pZM1252603, complete sequence) position: , mismatch: 2, identity: 0.938

gcgcatcttctgatgcttttttagctgcggcc	CRISPR spacer
gcgcttcttctgctgcttttttagctgcggcc	Protospacer
**** ******* *******************

10. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP003718 (Zymomonas mobilis subsp. mobilis str. CP4 = NRRL B-14023 plasmid pZM1402303, complete sequence) position: , mismatch: 2, identity: 0.938

gcgcatcttctgatgcttttttagctgcggcc	CRISPR spacer
gcgcttcttctgctgcttttttagctgcggcc	Protospacer
**** ******* *******************

11. spacer 3.2|1590442|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NC_019019 (Zymomonas mobilis plasmid pZMN1-1, complete sequence) position: , mismatch: 2, identity: 0.938

ttgacgctgtgagcgtgacgatatgctttcac	CRISPR spacer
ttgacgctgtgaccgtgacgatatcctttcac	Protospacer
************ *********** *******

12. spacer 3.2|1590442|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NC_009716 (Escherichia sp. Sflu5 cryptic plasmid pAK51) position: , mismatch: 4, identity: 0.875

ttgacgctgtgagcgtgacgatatgctttcac	CRISPR spacer
ttgacgctgtgagcgtgacgatatgcttatcg	Protospacer
**************************** .

13. spacer 3.2|1590442|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NC_001845 (Zymomonas mobilis ATCC10988 plasmid pZMO1, complete sequence) position: , mismatch: 4, identity: 0.875

ttgacgctgtgagcgtgacgatatgctttcac	CRISPR spacer
ttgacgctgtgagcgtgacgatatgcttatcg	Protospacer
**************************** .

14. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to MK448979 (Streptococcus phage Javan534, complete genome) position: , mismatch: 7, identity: 0.781

gcgcatcttctgatgcttttttagctg--cggcc	CRISPR spacer
acccatcttctgatggttttttcgctgactgg--	Protospacer
.* ************ ****** ****  .**

15. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to MK448799 (Streptococcus phage Javan535, complete genome) position: , mismatch: 7, identity: 0.781

gcgcatcttctgatgcttttttagctg--cggcc	CRISPR spacer
acccatcttctgatggttttttcgctgactgg--	Protospacer
.* ************ ****** ****  .**

16. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to MK448800 (Streptococcus phage Javan539, complete genome) position: , mismatch: 7, identity: 0.781

gcgcatcttctgatgcttttttagctg--cggcc	CRISPR spacer
acccatcttctgatggttttttcgctgactgg--	Protospacer
.* ************ ****** ****  .**

17. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to MT939241 (Enterococcus phage 9183, complete genome) position: , mismatch: 7, identity: 0.781

gcgc-atcttctgatgcttttttagctgcggcc	CRISPR spacer
-cgctgtcttctgatgctttcttagccgcacca	Protospacer
 *** .**************.*****.**. *

18. spacer 1.5|114051|32|CP035713|CRT,PILER-CR matches to NZ_CP018236 (Rhizobium leguminosarum strain Vaf-108 plasmid unnamed8) position: , mismatch: 8, identity: 0.75

acagctaaaacccttttacctttactgtcggc	CRISPR spacer
tgacatcgaaccattttacctttcctgtcggc	Protospacer
  *  * .**** ********** ********

19. spacer 2.4|1243162|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_LR214998 (Mycoplasma conjunctivae strain NCTC10147 plasmid 2) position: , mismatch: 8, identity: 0.75

ttctcaaaaaggaaaagaaattggaacagatt	CRISPR spacer
ccaacaaaaaggaaaataaaatggaacaaaat	Protospacer
..  ************ *** *******.* *

20. spacer 2.4|1243162|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049042 (Pseudohalocynthiibacter aestuariivivens strain RR4-35 plasmid pRR4-35_5, complete sequence) position: , mismatch: 8, identity: 0.75

---ttctcaaaaaggaaaagaaattggaacagatt	CRISPR spacer
aggtcttc---aaggaaaagatattggaagagatg	Protospacer
   *..**   ********** ******* ****

21. spacer 2.4|1243162|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP049700 (Bradyrhizobium sp. 1S5 strain 323S2 plasmid pB323S2a, complete sequence) position: , mismatch: 8, identity: 0.75

ttctcaaaaaggaaaagaaattggaacagatt--	CRISPR spacer
gactcaaacaggaaaagaaactgga--cgatcgg	Protospacer
  ****** ***********.****   ***.

22. spacer 3.2|1590442|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to CP053324 (Salmonella enterica subsp. salamae serovar 40:c:e,n,z15 strain 2013K-0524 plasmid unnamed, complete sequence) position: , mismatch: 8, identity: 0.75

ttgacgctgtgagcgtgacgatatgctttcac	CRISPR spacer
gtcacgctgtgaacgtaacgatatgcgtaaat	Protospacer
 * *********.***.********* *  *.

23. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to MT446411 (UNVERIFIED: Escherichia virus TH40, complete genome) position: , mismatch: 9, identity: 0.719

gcgcatcttctgatgcttttttagctgcggcc	CRISPR spacer
tcgcatcttctgtttcttttttagacgccatg	Protospacer
 *********** * ********* .** ..

24. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to MT446421 (UNVERIFIED: Escherichia virus TH55, complete genome) position: , mismatch: 9, identity: 0.719

gcgcatcttctgatgcttttttagctgcggcc	CRISPR spacer
tcgcatcttctgtttcttttttagacgccatg	Protospacer
 *********** * ********* .** ..

25. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to MT446396 (UNVERIFIED: Escherichia virus TH22, complete genome) position: , mismatch: 9, identity: 0.719

gcgcatcttctgatgcttttttagctgcggcc	CRISPR spacer
tcgcatcttctgtttcttttttagacgccatg	Protospacer
 *********** * ********* .** ..

26. spacer 2.4|1243162|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to MN692951 (Marine virus AFVG_117M12, complete genome) position: , mismatch: 10, identity: 0.688

ttctcaaaaaggaaaagaaattggaacagatt	CRISPR spacer
ggacgcaacaggaaaagaaattggaaaagaaa	Protospacer
   .  ** ***************** ***

27. spacer 2.4|1243162|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NC_019526 (Enterobacteria phage vB_KleM-RaK2, complete genome) position: , mismatch: 10, identity: 0.688

ttctcaaaaaggaaaagaaattggaacagatt	CRISPR spacer
agtacaaaaaggacaagaaattggtactgcaa	Protospacer
  . ********* ********** ** *

28. spacer 2.4|1243162|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to MT708547 (Klebsiella phage Muenster, complete genome) position: , mismatch: 10, identity: 0.688

ttctcaaaaaggaaaagaaattggaacagatt	CRISPR spacer
agtacaaaaaggacaagaaattggtactgcaa	Protospacer
  . ********* ********** ** *

29. spacer 2.4|1243162|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to AB897757 (Klebsiella phage K64-1 DNA, complete genome) position: , mismatch: 10, identity: 0.688

ttctcaaaaaggaaaagaaattggaacagatt	CRISPR spacer
agtacaaaaaggacaagaaattggtactgcaa	Protospacer
  . ********* ********** ** *

30. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to NC_020292 (Clostridium saccharoperbutylacetonicum N1-4(HMT) plasmid Csp_135p, complete sequence) position: , mismatch: 10, identity: 0.688

gcgcatcttctgatgcttttttagctgcggcc	CRISPR spacer
tattatcatctgatgcttctttagctgaattc	Protospacer
   .*** **********.******** . .*

31. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to MN583270 (Pseudomonas aeruginosa strain NK546 plasmid pNK546b, complete sequence) position: , mismatch: 10, identity: 0.688

gcgcatcttctgatgcttttttagctgcggcc	CRISPR spacer
agtgaaggacttatgcttttttagctgaggcc	Protospacer
.   *    ** *************** ****

32. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to MF360958 (Salicola phage SCTP-2, complete genome) position: , mismatch: 10, identity: 0.688

gcgcatcttctgatgcttttttagctgcggcc	CRISPR spacer
catcatcttctggtgcttttttacctaagaaa	Protospacer
   *********.********** **. *.

33. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to JN231330 (UNVERIFIED: Uncultured phage contig03 MexF-like gene, complete sequence) position: , mismatch: 10, identity: 0.688

gcgcatcttctgatgcttttttagctgcggcc	CRISPR spacer
ccccaacttcagatgcttttttagctaatcta	Protospacer
 * ** **** ***************.   .

34. spacer 2.4|1243162|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to KY549443 (Enterococcus phage EFP01, complete genome) position: , mismatch: 11, identity: 0.656

ttctcaaaaaggaaaagaaattggaacagatt	CRISPR spacer
cgtccaaaatggaaaagaaattgaaacgtgaa	Protospacer
. ..***** *************.***. .

35. spacer 3.1|1590382|32|CP035713|PILER-CR,CRISPRCasFinder,CRT matches to AP013403 (Uncultured Mediterranean phage uvMED DNA, complete genome, group G15, isolate: uvMED-CGR-U-MedDCM-OCT-S41-C7) position: , mismatch: 11, identity: 0.656

gcgcatcttctgatgcttttttagctgcggcc	CRISPR spacer
cggcaacttctgatgcttttgtagcaattaat	Protospacer
  *** ************** **** .. . .

Prophage detection

Region	Region Position	Protein_number	Hit_taxonomy	Key_proteins	Att_site	Prophage annotation

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP035713

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

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Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection