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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP020959 Staphylococcus aureus strain H489 chromosome, complete genome 10 crisprs cas3,DEDDh,DinG,csa3,WYL 11 8 8 0

Results visualization

1. CP020959
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020959_1 421338-421438 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020959_2 661086-661178 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020959_3 777088-777170 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020959_5 880344-880425 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020959_6 929188-929470 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020959_8 1147198-1147283 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020959_9 1801460-1801662 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020959_10 1961073-1961151 Orphan NA
1 spacers
DEDDh

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020959_11 2153113-2153263 Orphan NA
2 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP020959_12 2277273-2277466 Orphan NA
3 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CP020959_5 5.1|880368|34|CP020959|CRISPRCasFinder 880368-880401 34 CP020959.1 1355358-1355391 0 1.0
CP020959_5 5.1|880368|34|CP020959|CRISPRCasFinder 880368-880401 34 CP020959.1 1444542-1444575 0 1.0
CP020959_8 8.1|1147228|26|CP020959|CRISPRCasFinder 1147228-1147253 26 CP020959.1 2715193-2715218 0 1.0
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 1801432-1801459 0 1.0
CP020959_12 12.2|2277352|36|CP020959|CRT 2277352-2277387 36 CP020959.1 1147129-1147164 0 1.0
CP020959_4 4.1|823623|26|CP020959|CRISPRCasFinder 823623-823648 26 CP020959.1 786560-786585 1 0.962
CP020959_4 4.1|823623|26|CP020959|CRISPRCasFinder 823623-823648 26 CP020959.1 2715193-2715218 1 0.962
CP020959_4 4.1|823623|26|CP020959|CRISPRCasFinder 823623-823648 26 CP020959.1 2715249-2715274 1 0.962
CP020959_6 6.1|929218|26|CP020959|CRT 929218-929243 26 CP020959.1 929162-929187 1 0.962
CP020959_6 6.3|929332|26|CP020959|CRT 929332-929357 26 CP020959.1 823679-823704 1 0.962
CP020959_8 8.1|1147228|26|CP020959|CRISPRCasFinder 1147228-1147253 26 CP020959.1 786616-786641 1 0.962
CP020959_8 8.1|1147228|26|CP020959|CRISPRCasFinder 1147228-1147253 26 CP020959.1 2715249-2715274 1 0.962
CP020959_9 9.2|1801549|40|CP020959|PILER-CR 1801549-1801588 40 CP020959.1 818158-818197 1 0.975
CP020959_9 9.2|1801549|40|CP020959|PILER-CR 1801549-1801588 40 CP020959.1 818213-818252 1 0.975
CP020959_9 9.2|1801549|40|CP020959|PILER-CR 1801549-1801588 40 CP020959.1 2715273-2715312 1 0.975
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 115310-115337 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 818170-818197 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 818225-818252 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 823774-823801 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 823832-823859 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 880414-880441 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 948861-948888 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 1072773-1072800 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 1147133-1147160 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 1355259-1355286 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 1444647-1444674 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 1622886-1622913 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 1962449-1962476 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 1971916-1971943 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 2468857-2468884 1 0.964
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 2715285-2715312 1 0.964
CP020959_12 12.2|2277352|36|CP020959|CRT 2277352-2277387 36 CP020959.1 1801428-1801463 1 0.972
CP020959_4 4.1|823623|26|CP020959|CRISPRCasFinder 823623-823648 26 CP020959.1 786616-786641 2 0.923
CP020959_4 4.1|823623|26|CP020959|CRISPRCasFinder 823623-823648 26 CP020959.1 929162-929187 2 0.923
CP020959_6 6.1|929218|26|CP020959|CRT 929218-929243 26 CP020959.1 786560-786585 2 0.923
CP020959_6 6.1|929218|26|CP020959|CRT 929218-929243 26 CP020959.1 2715193-2715218 2 0.923
CP020959_6 6.1|929218|26|CP020959|CRT 929218-929243 26 CP020959.1 2715249-2715274 2 0.923
CP020959_6 6.3|929332|26|CP020959|CRT 929332-929357 26 CP020959.1 382672-382697 2 0.923
CP020959_7 7.3|1143260|36|CP020959|CRT 1143260-1143295 36 CP020959.1 777059-777094 2 0.944
CP020959_8 8.1|1147228|26|CP020959|CRISPRCasFinder 1147228-1147253 26 CP020959.1 786560-786585 2 0.923
CP020959_8 8.1|1147228|26|CP020959|CRISPRCasFinder 1147228-1147253 26 CP020959.1 786672-786697 2 0.923
CP020959_9 9.2|1801549|40|CP020959|PILER-CR 1801549-1801588 40 CP020959.1 301442-301481 2 0.95
CP020959_9 9.2|1801549|40|CP020959|PILER-CR 1801549-1801588 40 CP020959.1 382803-382842 2 0.95
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 382803-382830 2 0.929
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 382858-382885 2 0.929
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 831039-831066 2 0.929
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 CP020959.1 1656850-1656877 2 0.929
CP020959_12 12.1|2277296|33|CP020959|CRT 2277296-2277328 33 CP020959.1 823659-823691 2 0.939
CP020959_12 12.1|2277296|33|CP020959|CRT 2277296-2277328 33 CP020959.1 1147185-1147217 2 0.939
CP020959_12 12.1|2277296|33|CP020959|CRT 2277296-2277328 33 CP020959.1 1355313-1355345 2 0.939
CP020959_12 12.1|2277296|33|CP020959|CRT 2277296-2277328 33 CP020959.1 1444588-1444620 2 0.939
CP020959_12 12.1|2277296|33|CP020959|CRT 2277296-2277328 33 CP020959.1 2550186-2550218 2 0.939
CP020959_12 12.2|2277352|36|CP020959|CRT 2277352-2277387 36 CP020959.1 1622882-1622917 2 0.944
CP020959_12 12.2|2277352|36|CP020959|CRT 2277352-2277387 36 CP020959.1 1971912-1971947 2 0.944
CP020959_12 12.3|2277411|33|CP020959|CRT 2277411-2277443 33 CP020959.1 823659-823691 2 0.939
CP020959_12 12.3|2277411|33|CP020959|CRT 2277411-2277443 33 CP020959.1 1147185-1147217 2 0.939
CP020959_12 12.3|2277411|33|CP020959|CRT 2277411-2277443 33 CP020959.1 1355313-1355345 2 0.939
CP020959_12 12.3|2277411|33|CP020959|CRT 2277411-2277443 33 CP020959.1 2550186-2550218 2 0.939

1. spacer 5.1|880368|34|CP020959|CRISPRCasFinder matches to position: 1355358-1355391, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

2. spacer 5.1|880368|34|CP020959|CRISPRCasFinder matches to position: 1444542-1444575, mismatch: 0, identity: 1.0

attgggaatccaatttctctttgttggggcccat	CRISPR spacer
attgggaatccaatttctctttgttggggcccat	Protospacer
**********************************

3. spacer 8.1|1147228|26|CP020959|CRISPRCasFinder matches to position: 2715193-2715218, mismatch: 0, identity: 1.0

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
**************************

4. spacer 9.4|1801549|28|CP020959|CRT matches to position: 1801432-1801459, mismatch: 0, identity: 1.0

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacagacaa	Protospacer
****************************

5. spacer 12.2|2277352|36|CP020959|CRT matches to position: 1147129-1147164, mismatch: 0, identity: 1.0

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttctttttgaaattctcta	Protospacer
************************************

6. spacer 4.1|823623|26|CP020959|CRISPRCasFinder matches to position: 786560-786585, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctgtgttggggccccg	Protospacer
***** ********************

7. spacer 4.1|823623|26|CP020959|CRISPRCasFinder matches to position: 2715193-2715218, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctatgttggggccccg	Protospacer
************.*************

8. spacer 4.1|823623|26|CP020959|CRISPRCasFinder matches to position: 2715249-2715274, mismatch: 1, identity: 0.962

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctttgttggggccccg	Protospacer
************ *************

9. spacer 6.1|929218|26|CP020959|CRT matches to position: 929162-929187, mismatch: 1, identity: 0.962

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaggctggtgg	Protospacer
***********************.**

10. spacer 6.3|929332|26|CP020959|CRT matches to position: 823679-823704, mismatch: 1, identity: 0.962

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacacagaagctgacga	Protospacer
**********************.***

11. spacer 8.1|1147228|26|CP020959|CRISPRCasFinder matches to position: 786616-786641, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacatagaagcaggcgg	Protospacer
******************** *****

12. spacer 8.1|1147228|26|CP020959|CRISPRCasFinder matches to position: 2715249-2715274, mismatch: 1, identity: 0.962

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ************

13. spacer 9.2|1801549|40|CP020959|PILER-CR matches to position: 818158-818197, mismatch: 1, identity: 0.975

gaatttcgaaaagaaattctacagacaatgcaagttggcg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttggcg	Protospacer
***********************.****************

14. spacer 9.2|1801549|40|CP020959|PILER-CR matches to position: 818213-818252, mismatch: 1, identity: 0.975

gaatttcgaaaagaaattctacagacaatgcaagttggcg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttggcg	Protospacer
***********************.****************

15. spacer 9.2|1801549|40|CP020959|PILER-CR matches to position: 2715273-2715312, mismatch: 1, identity: 0.975

gaatttcgaaaagaaattctacagacaatgcaagttggcg	CRISPR spacer
gaatttcgaaaagaaattctacaaacaatgcaagttggcg	Protospacer
***********************.****************

16. spacer 9.4|1801549|28|CP020959|CRT matches to position: 115310-115337, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
************************.***

17. spacer 9.4|1801549|28|CP020959|CRT matches to position: 818170-818197, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaaacaa	Protospacer
***********************.****

18. spacer 9.4|1801549|28|CP020959|CRT matches to position: 818225-818252, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaaacaa	Protospacer
***********************.****

19. spacer 9.4|1801549|28|CP020959|CRT matches to position: 823774-823801, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
************************.***

20. spacer 9.4|1801549|28|CP020959|CRT matches to position: 823832-823859, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
************************.***

21. spacer 9.4|1801549|28|CP020959|CRT matches to position: 880414-880441, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
************************.***

22. spacer 9.4|1801549|28|CP020959|CRT matches to position: 948861-948888, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
************************.***

23. spacer 9.4|1801549|28|CP020959|CRT matches to position: 1072773-1072800, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
************************.***

24. spacer 9.4|1801549|28|CP020959|CRT matches to position: 1147133-1147160, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcaaaaagaaattctacagacaa	Protospacer
*******.********************

25. spacer 9.4|1801549|28|CP020959|CRT matches to position: 1355259-1355286, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
************************.***

26. spacer 9.4|1801549|28|CP020959|CRT matches to position: 1444647-1444674, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
************************.***

27. spacer 9.4|1801549|28|CP020959|CRT matches to position: 1622886-1622913, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
************************.***

28. spacer 9.4|1801549|28|CP020959|CRT matches to position: 1962449-1962476, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
************************.***

29. spacer 9.4|1801549|28|CP020959|CRT matches to position: 1971916-1971943, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaggaaattctacagacaa	Protospacer
***********.****************

30. spacer 9.4|1801549|28|CP020959|CRT matches to position: 2468857-2468884, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaggcaa	Protospacer
************************.***

31. spacer 9.4|1801549|28|CP020959|CRT matches to position: 2715285-2715312, mismatch: 1, identity: 0.964

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaaacaa	Protospacer
***********************.****

32. spacer 12.2|2277352|36|CP020959|CRT matches to position: 1801428-1801463, mismatch: 1, identity: 0.972

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcttttcgaaattctcta	Protospacer
************************.***********

33. spacer 4.1|823623|26|CP020959|CRISPRCasFinder matches to position: 786616-786641, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgcctgcttctatgttggggccccg	Protospacer
***** ******.*************

34. spacer 4.1|823623|26|CP020959|CRISPRCasFinder matches to position: 929162-929187, mismatch: 2, identity: 0.923

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccaccagcctctgtgttggggccccg	Protospacer
**.*****.*****************

35. spacer 6.1|929218|26|CP020959|CRT matches to position: 786560-786585, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*****************.** *****

36. spacer 6.1|929218|26|CP020959|CRT matches to position: 2715193-2715218, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacatagaagctggcgg	Protospacer
*************.***.********

37. spacer 6.1|929218|26|CP020959|CRT matches to position: 2715249-2715274, mismatch: 2, identity: 0.923

cggggccccaacacagaggctggcgg	CRISPR spacer
cggggccccaacaaagaagctggcgg	Protospacer
************* ***.********

38. spacer 6.3|929332|26|CP020959|CRT matches to position: 382672-382697, mismatch: 2, identity: 0.923

cggggccccaacacagaagctggcga	CRISPR spacer
cggggccccaacaaagaagctgacga	Protospacer
************* ********.***

39. spacer 7.3|1143260|36|CP020959|CRT matches to position: 777059-777094, mismatch: 2, identity: 0.944

cggggccccaacatagagaaattggaaccccaattt	CRISPR spacer
cggggccccaacatagagaaattggattcccaattt	Protospacer
************************** .********

40. spacer 8.1|1147228|26|CP020959|CRISPRCasFinder matches to position: 786560-786585, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacacagaagcaggcgg	Protospacer
*************.****** *****

41. spacer 8.1|1147228|26|CP020959|CRISPRCasFinder matches to position: 786672-786697, mismatch: 2, identity: 0.923

cggggccccaacatagaagctggcgg	CRISPR spacer
cggggccccaacataaaagcaggcgg	Protospacer
***************.**** *****

42. spacer 9.2|1801549|40|CP020959|PILER-CR matches to position: 301442-301481, mismatch: 2, identity: 0.95

gaatttcgaaaagaaattctacagacaatgcaagttggcg	CRISPR spacer
gaatttcgaaaagaaattctacaggtaatgcaagttggcg	Protospacer
************************..**************

43. spacer 9.2|1801549|40|CP020959|PILER-CR matches to position: 382803-382842, mismatch: 2, identity: 0.95

gaatttcgaaaagaaattctacagacaatgcaagttggcg	CRISPR spacer
gaatttcgaaaagaaattctacaagcaatgcaagttggcg	Protospacer
***********************..***************

44. spacer 9.4|1801549|28|CP020959|CRT matches to position: 382803-382830, mismatch: 2, identity: 0.929

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaagcaa	Protospacer
***********************..***

45. spacer 9.4|1801549|28|CP020959|CRT matches to position: 382858-382885, mismatch: 2, identity: 0.929

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaaagaaattctacaagcaa	Protospacer
***********************..***

46. spacer 9.4|1801549|28|CP020959|CRT matches to position: 831039-831066, mismatch: 2, identity: 0.929

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgaaatgaaattctacaggcaa	Protospacer
*********** ************.***

47. spacer 9.4|1801549|28|CP020959|CRT matches to position: 1656850-1656877, mismatch: 2, identity: 0.929

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
gaatttcgtaaagaaattctacaggcaa	Protospacer
******** ***************.***

48. spacer 12.1|2277296|33|CP020959|CRT matches to position: 823659-823691, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

49. spacer 12.1|2277296|33|CP020959|CRT matches to position: 1147185-1147217, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

50. spacer 12.1|2277296|33|CP020959|CRT matches to position: 1355313-1355345, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

51. spacer 12.1|2277296|33|CP020959|CRT matches to position: 1444588-1444620, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcatcttctg	Protospacer
********** ***************.******

52. spacer 12.1|2277296|33|CP020959|CRT matches to position: 2550186-2550218, mismatch: 2, identity: 0.939

cattattgtatgctgacttttcgtcaccttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********** *************** ******

53. spacer 12.2|2277352|36|CP020959|CRT matches to position: 1622882-1622917, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgcctgtagaatttcttttcgaaattctcta	Protospacer
*******.****************.***********

54. spacer 12.2|2277352|36|CP020959|CRT matches to position: 1971912-1971947, mismatch: 2, identity: 0.944

tgcattgtctgtagaatttctttttgaaattctcta	CRISPR spacer
tgcattgtctgtagaatttcctttcgaaattctcta	Protospacer
********************.***.***********

55. spacer 12.3|2277411|33|CP020959|CRT matches to position: 823659-823691, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

56. spacer 12.3|2277411|33|CP020959|CRT matches to position: 1147185-1147217, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

57. spacer 12.3|2277411|33|CP020959|CRT matches to position: 1355313-1355345, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

58. spacer 12.3|2277411|33|CP020959|CRT matches to position: 2550186-2550218, mismatch: 2, identity: 0.939

cattattgtaagctgactttctgtcagcttctg	CRISPR spacer
cattattgtaagctgacttttcgtcagcttctg	Protospacer
********************..***********

CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP020959_6 6.4|929388|53|CP020959|CRT 929388-929440 53 MG543995 Staphylococcus phage UPMK_1, partial genome 76246-76298 4 0.925
CP020959_9 9.5|1801607|26|CP020959|CRT 1801607-1801632 26 MF459647 Erwinia phage vB_EamM_Joad, complete genome 84795-84820 4 0.846
CP020959_9 9.5|1801607|26|CP020959|CRT 1801607-1801632 26 MF459646 Erwinia phage vB_EamM_RisingSun, complete genome 84869-84894 4 0.846
CP020959_4 4.1|823623|26|CP020959|CRISPRCasFinder 823623-823648 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
CP020959_4 4.1|823623|26|CP020959|CRISPRCasFinder 823623-823648 26 NZ_CP034332 Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence 3359-3384 5 0.808
CP020959_4 4.1|823623|26|CP020959|CRISPRCasFinder 823623-823648 26 NZ_CP022605 Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence 715511-715536 5 0.808
CP020959_6 6.3|929332|26|CP020959|CRT 929332-929357 26 NZ_CP022541 Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence 333735-333760 5 0.808
CP020959_9 9.1|1801490|29|CP020959|PILER-CR,CRISPRCasFinder,CRT 1801490-1801518 29 MF459647 Erwinia phage vB_EamM_Joad, complete genome 84795-84823 6 0.793
CP020959_9 9.1|1801490|29|CP020959|PILER-CR,CRISPRCasFinder,CRT 1801490-1801518 29 MF459646 Erwinia phage vB_EamM_RisingSun, complete genome 84869-84897 6 0.793
CP020959_9 9.3|1801619|29|CP020959|PILER-CR 1801619-1801647 29 MF459647 Erwinia phage vB_EamM_Joad, complete genome 84795-84823 6 0.793
CP020959_9 9.3|1801619|29|CP020959|PILER-CR 1801619-1801647 29 MF459646 Erwinia phage vB_EamM_RisingSun, complete genome 84869-84897 6 0.793
CP020959_9 9.4|1801549|28|CP020959|CRT 1801549-1801576 28 KM359505 Prochlorococcus phage P-TIM68, complete genome 102710-102737 6 0.786
CP020959_10 10.1|1961096|33|CP020959|CRISPRCasFinder 1961096-1961128 33 NZ_CP009619 Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence 270866-270898 8 0.758

1. spacer 6.4|929388|53|CP020959|CRT matches to MG543995 (Staphylococcus phage UPMK_1, partial genome) position: , mismatch: 4, identity: 0.925

ggtgggacgacgaaataaattttgcgaaaatatcatttctgtcccactcccaa	CRISPR spacer
ggtgggacgacgaaataaattttgagaaactatcatttctgtcccactccctt	Protospacer
************************ **** *********************  

2. spacer 9.5|1801607|26|CP020959|CRT matches to MF459647 (Erwinia phage vB_EamM_Joad, complete genome) position: , mismatch: 4, identity: 0.846

tggccaatagtcagctttcaataatg	CRISPR spacer
cggccaataatcagcttccaataatc	Protospacer
.********.*******.******* 

3. spacer 9.5|1801607|26|CP020959|CRT matches to MF459646 (Erwinia phage vB_EamM_RisingSun, complete genome) position: , mismatch: 4, identity: 0.846

tggccaatagtcagctttcaataatg	CRISPR spacer
cggccaataatcagcttccaataatc	Protospacer
.********.*******.******* 

4. spacer 4.1|823623|26|CP020959|CRISPRCasFinder matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
acgccagcttctgtgttgaggcctta	Protospacer
 *****************.****...

5. spacer 4.1|823623|26|CP020959|CRISPRCasFinder matches to NZ_CP034332 (Tabrizicola piscis strain K13M18 plasmid unnamed4, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtctgggcctac	Protospacer
****************. *****.  

6. spacer 4.1|823623|26|CP020959|CRISPRCasFinder matches to NZ_CP022605 (Ochrobactrum quorumnocens strain A44 plasmid unnamed1, complete sequence) position: , mismatch: 5, identity: 0.808

ccgccagcttctgtgttggggccccg	CRISPR spacer
ccgccagcttctgtgtttggccctga	Protospacer
***************** ** **. .

7. spacer 6.3|929332|26|CP020959|CRT matches to NZ_CP022541 (Antarctobacter heliothermus strain SMS3 plasmid pSMS3-1, complete sequence) position: , mismatch: 5, identity: 0.808

cggggccccaacacagaagctggcga	CRISPR spacer
taaggcctcaacacagaagctggcgt	Protospacer
...****.***************** 

8. spacer 9.1|1801490|29|CP020959|PILER-CR,CRISPRCasFinder,CRT matches to MF459647 (Erwinia phage vB_EamM_Joad, complete genome) position: , mismatch: 6, identity: 0.793

agctggccaatagtcagctttcaataatg	CRISPR spacer
caccggccaataatcagcttccaataatc	Protospacer
 .*.********.*******.******* 

9. spacer 9.1|1801490|29|CP020959|PILER-CR,CRISPRCasFinder,CRT matches to MF459646 (Erwinia phage vB_EamM_RisingSun, complete genome) position: , mismatch: 6, identity: 0.793

agctggccaatagtcagctttcaataatg	CRISPR spacer
caccggccaataatcagcttccaataatc	Protospacer
 .*.********.*******.******* 

10. spacer 9.3|1801619|29|CP020959|PILER-CR matches to MF459647 (Erwinia phage vB_EamM_Joad, complete genome) position: , mismatch: 6, identity: 0.793

agctggccaatagtcagctttcaataatg	CRISPR spacer
caccggccaataatcagcttccaataatc	Protospacer
 .*.********.*******.******* 

11. spacer 9.3|1801619|29|CP020959|PILER-CR matches to MF459646 (Erwinia phage vB_EamM_RisingSun, complete genome) position: , mismatch: 6, identity: 0.793

agctggccaatagtcagctttcaataatg	CRISPR spacer
caccggccaataatcagcttccaataatc	Protospacer
 .*.********.*******.******* 

12. spacer 9.4|1801549|28|CP020959|CRT matches to KM359505 (Prochlorococcus phage P-TIM68, complete genome) position: , mismatch: 6, identity: 0.786

gaatttcgaaaagaaattctacagacaa	CRISPR spacer
ctatttccaaaagaaattatacagatca	Protospacer
  ***** ********** ******. *

13. spacer 10.1|1961096|33|CP020959|CRISPRCasFinder matches to NZ_CP009619 (Vibrio coralliilyticus strain RE98 plasmid p380, complete sequence) position: , mismatch: 8, identity: 0.758

ccaacctgcattgcctgtagaatttcttttttg	CRISPR spacer
aagtgctgcattacctgtagcatttcttttttc	Protospacer
  .  *******.******* *********** 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 131800 : 177725 68 Staphylococcus_phage(95.31%) integrase,holin,capsid,protease,tail,portal,head,terminase attL 132803:132818|attR 177111:177126
DBSCAN-SWA_2 755195 : 763015 10 Hokovirus(16.67%) NA NA
DBSCAN-SWA_3 774987 : 789774 18 uncultured_Caudovirales_phage(50.0%) NA NA
DBSCAN-SWA_4 840692 : 852868 14 Staphylococcus_phage(50.0%) integrase,capsid attL 832872:832886|attR 853673:853687
DBSCAN-SWA_5 974324 : 1029190 56 Streptococcus_phage(28.57%) tRNA,protease,bacteriocin NA
DBSCAN-SWA_6 1594505 : 1602817 7 Staphylococcus_phage(16.67%) tRNA NA
DBSCAN-SWA_7 1669335 : 1680994 8 uncultured_Mediterranean_phage(42.86%) tRNA NA
DBSCAN-SWA_8 1806549 : 1921643 116 Staphylococcus_phage(92.42%) tRNA,protease,bacteriocin,transposase NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage