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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP036168 Salmonella enterica subsp. enterica serovar Typhimurium strain sg_wt7 chromosome, complete genome 3 crisprs cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG 0 27 13 0

Results visualization

1. CP036168
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP036168_2 981685-983666 TypeI-E I-E
32 spacers
cas3,cas8e

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP036168_3 999798-1000375 TypeI-E I-E
9 spacers
cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP036168_4 1308979-1309088 Orphan NA
1 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP036168_2 2.28|983365|32|CP036168|PILER-CR 983365-983396 32 NZ_CP034699 Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence 177960-177991 1 0.969
CP036168_2 2.28|983365|32|CP036168|PILER-CR 983365-983396 32 NZ_CP034710 Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence 67131-67162 1 0.969
CP036168_2 2.38|983362|32|CP036168|CRISPRCasFinder,CRT 983362-983393 32 NZ_CP034699 Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence 177960-177991 1 0.969
CP036168_2 2.38|983362|32|CP036168|CRISPRCasFinder,CRT 983362-983393 32 NZ_CP034710 Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence 67131-67162 1 0.969
CP036168_2 2.32|982995|32|CP036168|CRISPRCasFinder,CRT 982995-983026 32 NZ_CP030204 Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence 130783-130814 2 0.938
CP036168_2 2.22|982995|35|CP036168|PILER-CR 982995-983029 35 NZ_CP030204 Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence 130780-130814 4 0.886
CP036168_2 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982324-982355 32 NC_011366 Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence 208454-208485 7 0.781
CP036168_2 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982324-982355 32 NC_017958 Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence 449563-449594 7 0.781
CP036168_2 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982324-982355 32 NZ_CP035001 Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence 167100-167131 7 0.781
CP036168_2 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 981958-981989 32 NC_028940 Pectobacterium bacteriophage PM2, complete genome 79087-79118 8 0.75
CP036168_2 2.6|982019|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982019-982050 32 NZ_CP014942 Rhodococcus sp. BH4 plasmid, complete sequence 462005-462036 8 0.75
CP036168_2 2.16|982629|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982629-982660 32 CP001770 Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence 145771-145802 8 0.75
CP036168_2 2.17|982690|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982690-982721 32 LQ277707 Sequence 2 from Patent WO2016071503 12422-12453 8 0.75
CP036168_2 2.17|982690|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982690-982721 32 LZ998055 JP 2017534684-A/2: Phage Therapy 12422-12453 8 0.75
CP036168_2 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982873-982904 32 NZ_CP028348 Novosphingobium sp. THN1 plasmid pTHN, complete sequence 1098771-1098802 8 0.75
CP036168_2 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982873-982904 32 NZ_CP014128 Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence 160189-160220 8 0.75
CP036168_2 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982873-982904 32 NC_014561 Pantoea vagans C9-1 plasmid pPag1, complete sequence 156443-156474 8 0.75
CP036168_2 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982873-982904 32 NC_010553 Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence 137983-138014 8 0.75
CP036168_2 2.25|983182|32|CP036168|PILER-CR 983182-983213 32 CP024685 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence 135469-135500 8 0.75
CP036168_2 2.25|983182|32|CP036168|PILER-CR 983182-983213 32 NZ_CP031801 Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence 11654-11685 8 0.75
CP036168_2 2.35|983179|32|CP036168|CRISPRCasFinder,CRT 983179-983210 32 CP024685 Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence 135469-135500 8 0.75
CP036168_2 2.35|983179|32|CP036168|CRISPRCasFinder,CRT 983179-983210 32 NZ_CP031801 Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence 11654-11685 8 0.75
CP036168_3 3.2|999886|34|CP036168|PILER-CR 999886-999919 34 NZ_CP016489 Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence 8862-8895 8 0.765
CP036168_3 3.2|999886|34|CP036168|PILER-CR 999886-999919 34 NZ_CP016476 Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence 151598-151631 8 0.765
CP036168_3 3.11|999888|32|CP036168|CRISPRCasFinder,CRT 999888-999919 32 NZ_CP016489 Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence 8862-8893 8 0.75
CP036168_3 3.11|999888|32|CP036168|CRISPRCasFinder,CRT 999888-999919 32 NZ_CP016476 Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence 151600-151631 8 0.75
CP036168_3 3.17|1000254|32|CP036168|CRISPRCasFinder,CRT 1000254-1000285 32 MN855803 Bacteriophage sp. isolate 108, partial genome 10057-10088 8 0.75
CP036168_2 2.7|982080|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982080-982111 32 NZ_CP021372 Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence 353298-353329 9 0.719
CP036168_2 2.7|982080|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982080-982111 32 AM749121 Streptococcus phage M102 complete genome 7893-7924 9 0.719
CP036168_2 2.7|982080|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982080-982111 32 NC_012884 Streptococcus phage M102, complete genome 7893-7924 9 0.719
CP036168_2 2.10|982263|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982263-982294 32 MN693046 Marine virus AFVG_25M413, complete genome 4323-4354 9 0.719
CP036168_2 2.10|982263|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982263-982294 32 MN693008 Marine virus AFVG_117M9, complete genome 4316-4347 9 0.719
CP036168_2 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982324-982355 32 DQ674738 Aeromonas phage phiO18P, complete genome 15707-15738 9 0.719
CP036168_2 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982324-982355 32 NZ_CP031166 Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence 380725-380756 9 0.719
CP036168_2 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982324-982355 32 NZ_CP022367 Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence 153785-153816 9 0.719
CP036168_2 2.14|982507|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982507-982538 32 MN694645 Marine virus AFVG_250M761, complete genome 31050-31081 9 0.719
CP036168_2 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982568-982599 32 MN062720 Microbacterium phage FuzzBuster, complete genome 19374-19405 9 0.719
CP036168_2 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982873-982904 32 NZ_CP045722 Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence 332-363 9 0.719
CP036168_2 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982873-982904 32 NZ_CP022519 Pantoea vagans strain FBS135 plasmid pPant3, complete sequence 62976-63007 9 0.719
CP036168_2 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982873-982904 32 NZ_CP028351 Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence 144976-145007 9 0.719
CP036168_2 2.23|983059|32|CP036168|PILER-CR 983059-983090 32 NZ_CP051686 Duganella sp. GN2-R2 plasmid unnamed1, complete sequence 45237-45268 9 0.719
CP036168_2 2.33|983056|32|CP036168|CRISPRCasFinder,CRT 983056-983087 32 NZ_CP051686 Duganella sp. GN2-R2 plasmid unnamed1, complete sequence 45237-45268 9 0.719
CP036168_2 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 981958-981989 32 NZ_CP042995 Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence 68697-68728 10 0.688
CP036168_2 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 981958-981989 32 NZ_CP026129 Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence 43950-43981 10 0.688
CP036168_2 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 981958-981989 32 NZ_CP038501 Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence 49131-49162 10 0.688
CP036168_2 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 981958-981989 32 NZ_CP046044 Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence 66631-66662 10 0.688
CP036168_2 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 981958-981989 32 NZ_CP048015 Acinetobacter towneri strain 205 plasmid pAT205, complete sequence 147167-147198 10 0.688
CP036168_2 2.8|982141|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982141-982172 32 NZ_CP030264 Ensifer adhaerens strain Corn53 plasmid AB, complete sequence 1134787-1134818 10 0.688
CP036168_2 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982568-982599 32 NZ_CP019257 Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence 20006-20037 10 0.688
CP036168_2 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982568-982599 32 NZ_CP019274 Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence 9024-9055 10 0.688
CP036168_2 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982568-982599 32 NZ_CP019275 Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence 27130-27161 10 0.688
CP036168_2 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982568-982599 32 NZ_CP019279 Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence 19363-19394 10 0.688
CP036168_2 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982568-982599 32 NZ_CP019246 Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence 23427-23458 10 0.688
CP036168_2 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982568-982599 32 NC_049342 Escherichia phage 500465-1, complete genome 24342-24373 10 0.688
CP036168_2 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982568-982599 32 KY271398 Klebsiella phage 4 LV-2017, complete genome 28240-28271 10 0.688
CP036168_2 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982568-982599 32 CP025900 Escherichia phage sp., complete genome 24342-24373 10 0.688
CP036168_2 2.29|983426|32|CP036168|PILER-CR 983426-983457 32 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 99817-99848 10 0.688
CP036168_2 2.39|983423|32|CP036168|CRISPRCasFinder,CRT 983423-983454 32 NZ_CP044072 Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence 99817-99848 10 0.688
CP036168_2 2.42|983606|32|CP036168|CRISPRCasFinder,CRT 983606-983637 32 NZ_CP054615 Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence 146919-146950 10 0.688
CP036168_3 3.8|1000252|34|CP036168|PILER-CR 1000252-1000285 34 MN855803 Bacteriophage sp. isolate 108, partial genome 10055-10088 10 0.706
CP036168_3 3.18|1000315|32|CP036168|CRISPRCasFinder,CRT 1000315-1000346 32 NC_016113 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence 1151729-1151760 10 0.688
CP036168_3 3.18|1000315|32|CP036168|CRISPRCasFinder,CRT 1000315-1000346 32 NC_017585 Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence 661429-661460 10 0.688
CP036168_2 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982324-982355 32 NZ_CP054036 Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence 234768-234799 11 0.656
CP036168_2 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT 982324-982355 32 NZ_CP022568 Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence 299431-299462 11 0.656

1. spacer 2.28|983365|32|CP036168|PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

2. spacer 2.28|983365|32|CP036168|PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

3. spacer 2.38|983362|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

4. spacer 2.38|983362|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

5. spacer 2.32|982995|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

aaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
aaacgaaagaggccatgcgattgtttatcggt	Protospacer
*************.*****.************

6. spacer 2.22|982995|35|CP036168|PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 4, identity: 0.886

tcgaaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
atgaaacgaaagaggccatgcgattgtttatcggt	Protospacer
 .**************.*****.************

7. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*   

8. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcaccgccgatcctttcaccgccgcc	Protospacer
********* ********* ****. *.  **

9. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*   

10. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 8, identity: 0.75

gctcattaaataactatataacccccggactc	CRISPR spacer
tatcattaaataactatataacacacgagagc	Protospacer
  ******************** * **..  *

11. spacer 2.6|982019|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttccagaaccgtttgacttactgtggccatta	CRISPR spacer
ctgccgaaccgtgtgccttactgtggccaccg	Protospacer
.* * ******* ** *************...

12. spacer 2.16|982629|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

cggaggatggaatatttccgaggctggcgatt	CRISPR spacer
tgggagatggaatacttccggggctggcaacc	Protospacer
.**..*********.*****.*******.*..

13. spacer 2.17|982690|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***    

14. spacer 2.17|982690|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***    

15. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac-	CRISPR spacer
atacgctggtctataccggcaa-ggatccgctg	Protospacer
  ******************** *.*. ** . 

16. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

17. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

18. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
ggacgctgttcaataccggcaacgtccggatc	Protospacer
 ******* ** ************  ** . *

19. spacer 2.25|983182|32|CP036168|PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  . 

20. spacer 2.25|983182|32|CP036168|PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.** 

21. spacer 2.35|983179|32|CP036168|CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  . 

22. spacer 2.35|983179|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.** 

23. spacer 3.2|999886|34|CP036168|PILER-CR matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.765

cgttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
cgctcttgaatatgattgcgggtttagatttacc	Protospacer
**.******************** ** .*  *. 

24. spacer 3.2|999886|34|CP036168|PILER-CR matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cgttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
cgctcttgaatatgattgcgggtttagatttacc	Protospacer
**.******************** ** .*  *. 

25. spacer 3.11|999888|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *. 

26. spacer 3.11|999888|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *. 

27. spacer 3.17|1000254|32|CP036168|CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  . 

28. spacer 2.7|982080|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
ggtgcgggtgaggaactcctcgtccactgaac	Protospacer
*  **** **** **************   . 

29. spacer 2.7|982080|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
aaggcggtggagtaactcctggtccagcccaa	Protospacer
. .***** *********** *****  .*.*

30. spacer 2.7|982080|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
aaggcggtggagtaactcctggtccagcccaa	Protospacer
. .***** *********** *****  .*.*

31. spacer 2.10|982263|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*  

32. spacer 2.10|982263|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*  

33. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcagcgccgagcagttcagcaaactg	Protospacer
**************** * *****  . .*. 

34. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
gcggcatcagcgccgaccggttcaccgtcagg	Protospacer
 ***************.* *****. **    

35. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatgagcgccgatcagttcgacgccctg	Protospacer
******* ********** ****.  *. *. 

36. spacer 2.14|982507|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

37. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaacggtcagcctgtccaggagga	Protospacer
****** *********** ****..**     

38. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

39. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

40. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattt	Protospacer
****.********.********** * .   .

41. spacer 2.23|983059|32|CP036168|PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

42. spacer 2.33|983056|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

43. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042995 (Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gctcattaaataactatataacccccggactc	CRISPR spacer
cagcattaattaactgtataacccccaaaaaa	Protospacer
   ****** *****.**********..*   

44. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 10, identity: 0.688

gctcattaaataactatataacccccggactc	CRISPR spacer
cagcattaattaactgtataacccccaaaaaa	Protospacer
   ****** *****.**********..*   

45. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038501 (Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gctcattaaataactatataacccccggactc	CRISPR spacer
cagcattaattaactgtataacccccaaaaaa	Protospacer
   ****** *****.**********..*   

46. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046044 (Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence) position: , mismatch: 10, identity: 0.688

gctcattaaataactatataacccccggactc	CRISPR spacer
cagcattaattaactgtataacccccaaaaaa	Protospacer
   ****** *****.**********..*   

47. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 10, identity: 0.688

gctcattaaataactatataacccccggactc	CRISPR spacer
cagcattaattaactgtataacccccaaaaaa	Protospacer
   ****** *****.**********..*   

48. spacer 2.8|982141|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

ctccagcgctcgaatttatttgaggccaccac	CRISPR spacer
gaacaccgcgcgaatttatttgaggcaagttt	Protospacer
   ** *** **************** * . .

49. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

50. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

51. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

52. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

53. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

54. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

55. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

56. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

57. spacer 2.29|983426|32|CP036168|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

58. spacer 2.39|983423|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

59. spacer 2.42|983606|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*  

60. spacer 3.8|1000252|34|CP036168|PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 10, identity: 0.706

cgggttaaccaggggtttttccccactatttcgc	CRISPR spacer
tcaggtaacgaggggtttttccccaatattgaaa	Protospacer
. .* **** *************** ****  . 

61. spacer 3.18|1000315|32|CP036168|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

62. spacer 3.18|1000315|32|CP036168|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

63. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

64. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 1161486 : 1181285 23 Escherichia_phage(50.0%) transposase NA
DBSCAN-SWA_2 1185066 : 1211063 26 Escherichia_phage(33.33%) transposase,integrase attL 1179035:1179094|attR 1204973:1205792
DBSCAN-SWA_3 1238360 : 1294237 40 Escherichia_phage(38.46%) transposase,integrase attL 1232847:1232861|attR 1295423:1295437
DBSCAN-SWA_4 1769662 : 1781953 11 Salmonella_phage(45.45%) holin,tail NA
DBSCAN-SWA_5 1854030 : 1863201 10 Enterobacteria_phage(66.67%) tRNA NA
DBSCAN-SWA_6 1931508 : 1942014 10 Enterobacteria_phage(37.5%) NA NA
DBSCAN-SWA_7 2028014 : 2038617 13 Morganella_phage(25.0%) NA NA
DBSCAN-SWA_8 2141938 : 2191255 60 Enterobacteria_phage(23.91%) portal,holin,tail,protease,integrase,lysis attL 2134700:2134715|attR 2191540:2191555
DBSCAN-SWA_9 2806407 : 2860341 65 Salmonella_phage(22.86%) head,tail,protease,integrase,lysis attL 2818273:2818287|attR 2850016:2850030
DBSCAN-SWA_10 2863807 : 2880799 26 Salmonella_phage(21.05%) integrase attL 2870229:2870242|attR 2881408:2881421
DBSCAN-SWA_11 3131822 : 3139842 7 Enterobacteria_phage(16.67%) protease,transposase NA
DBSCAN-SWA_12 3497877 : 3562822 73 Enterobacteria_phage(31.11%) terminase,holin,tail,protease,tRNA,integrase attL 3495830:3495847|attR 3553710:3553727
DBSCAN-SWA_13 4549586 : 4596547 51 Burkholderia_phage(40.91%) plate,tail,tRNA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage