CRISPRimmunity

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Overview of predicted results

Overview of the results

Contig_ID	Contig_def	CRISPR array number	Contig Signature genes	Self targeting spacer number	Target MGE spacer number	Prophage number	Anti-CRISPR protein number
CP036168	Salmonella enterica subsp. enterica serovar Typhimurium strain sg_wt7 chromosome, complete genome	3 crisprs	cas3,PD-DExK,WYL,cas8e,cse2gr11,cas7,cas5,cas6e,cas1,cas2,csa3,DEDDh,DinG	0	27	13	0

Results visualization

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CRISPR-Cas detection and classification

Crispr_ID: CP036168_2

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP036168_2

981685-983666

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAACCG	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

32 spacers

cas3,cas8e

The CRISPR arrays of CP036168_2

>merge|CP036168|2|981685-983666|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGTGCAGAGTTGTATCTTACCCTGTTTACGTTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTATCCCAATATATTTCGCTATCAGTTACATCGTGTTCCCCGCGCCAGCGGGGATAAACCGGACTGTTTATACCGGATTCCATGCGTTTTCAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGAATTACTGGCTAACGACGAACTGACAGTTGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCTCATTAAATAACTATATAACCCCCGGACTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCCAGAACCGTTTGACTTACTGTGGCCATTAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAGCGGTTGAGTAACTCCTCGTCCACGTCGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCTCCAGCGCTCGAATTTATTTGAGGCCACCACGTGTTCCCCGCGCCAGCGGGGATAAACCGTTTTGATACGTAGTATTCATTACGCCTCCTAGGTGTTCCCCGCGCCAGCGGGGATAAACCGGCGAGGTCAATAAAAAATGGTGTGGCTTTACCGTGTTCCCCGCGCCAGCGGGGATAAACCGCCGGCATCAGCGCCGATCCGTTCATAGTGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAAAAAACAGAAGAACGGCAAGCGGCACCTCAAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTCAGCGCGGTATTGAGGCCGGGGACCGCCCGTGTTCCCCGCGCCAGCGGGGATAAACCGAACAGGAACAGGAAAAAAAAGATTTGTCCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGATCCTCAACGGTCAGGCTGTTTAGTTCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGCGGAGGATGGAATATTTCCGAGGCTGGCGATTGTGTTCCCCGCGCTAGCGGGGATAAACCGATGCCGGAACGCTGATGGCGTTTGACATGAGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGAATTATTTCTGTGGCTGGGGTTTCGATTCGATGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGCTGGTCTATACCGGCAACGAACGCGACGTGTTCCCCGCGCCAGCGGGGATAAACCGCCAGCTTACGCTATTTACGACGTTATTGAGCAGTGTTCCCCGCGCCAGCAGGGATAAATCGAAACGAAAGAGGCTATGCGGTTGTTTATCGGTGTGTTCCCCGCGCCAGCGGGGATAAACCGCCCCGATAGCGACGCTTCTGTAGTCACTGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGGTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTGTTCCCCGCGCCAGCGGGGATAAGCCGCGTCACTTTCTGACATTTTATTCAGTTCGTTAGTGTTCCCCGTGCCAGCGGGGATAAACCGTCATTTCTGGACGGGGCTGTGTGACGAATACGGTGTTCCCCGCGCCAGCGGGGATAAACCGTGTCCAATTAACCCAAACTTTGCGCGCTTAATATGTTCCCCGCGCTAGCGGGGATAAACCGGGATATGTGAAGTTCAGGTAGCCCATTACGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGTTGATCGAGAGTGCGAAGAGGCAGAACGGGCAGTGTTCCCCGCGCCAGCGGGGATAAACCGCAGGTTATGCGCAAAAATTAATTCATATTATAGTGTTCCCCGCGCCAGCAGGGATAAACCGGACGAGTTCTGGAAATGGTTAGCTGATAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGCGTTCATCGGCAGCGTCACGCAATATGAAGATGTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP036168|2|1|981685-983605|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTACTGGCTAACGACGAACTGACAGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCATTAAATAACTATATAACCCCCGGACTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAGAACCGTTTGACTTACTGTGGCCATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGTGTG
TTCCCCGCGCCAGCGGGGATAAACCGCCC	CGATAGCGACGCTTCTGTAGTCACTGGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGGTG	AGTTCGGTTTTAATTTCGTCGCTAAGCTGCGTG
TTCCCCGCGCCAGCGGGGATAAGCCGCGT	CACTTTCTGACATTTTATTCAGTTCGTTAGTG
TTCCCCGTGCCAGCGGGGATAAACCGTCA	TTTCTGGACGGGGCTGTGTGACGAATACGGTG
TTCCCCGCGCCAGCGGGGATAAACCGTGT	CCAATTAACCCAAACTTTGCGCGCTTAATATG
TTCCCCGCGCTAGCGGGGATAAACCGGGA	TATGTGAAGTTCAGGTAGCCCATTACGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGTTG	ATCGAGAGTGCGAAGAGGCAGAACGGGCAGTG
TTCCCCGCGCCAGCGGGGATAAACCGCAG	GTTATGCGCAAAAATTAATTCATATTATAGTG
TTCCCCGCGCCAGCAGGGATAAACCGGAC	GAGTTCTGGAAATGGTTAGCTGATAAAGAGTG
TTCCCCGCGCCAGCGGGGATAAACCG

>CP036168|2|2|981685-983666|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTACTGGCTAACGACGAACTGACAGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCATTAAATAACTATATAACCCCCGGACTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAGAACCGTTTGACTTACTGTGGCCATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

>CP036168|2|1|981685-983666|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGCAGAGTTGTATCTTACCCTGTTTACGTTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTATCCCAATATATTTCGCTATCAGTTACATC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GACTGTTTATACCGGATTCCATGCGTTTTCAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAATTACTGGCTAACGACGAACTGACAGTTGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCTCATTAAATAACTATATAACCCCCGGACTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCCAGAACCGTTTGACTTACTGTGGCCATTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAGCGGTTGAGTAACTCCTCGTCCACGTCGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CTCCAGCGCTCGAATTTATTTGAGGCCACCAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTTTGATACGTAGTATTCATTACGCCTCCTAG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCGAGGTCAATAAAAAATGGTGTGGCTTTACC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCGGCATCAGCGCCGATCCGTTCATAGTGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AAAAAACAGAAGAACGGCAAGCGGCACCTCAA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTCAGCGCGGTATTGAGGCCGGGGACCGCCC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACAGGAACAGGAAAAAAAAGATTTGTCCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGATCCTCAACGGTCAGGCTGTTTAGTTCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGGAGGATGGAATATTTCCGAGGCTGGCGATT
GTGTTCCCCGCGCTAGCGGGGATAAACCG	ATGCCGGAACGCTGATGGCGTTTGACATGAGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AATTATTTCTGTGGCTGGGGTTTCGATTCGAT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGCTGGTCTATACCGGCAACGAACGCGAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCAGCTTACGCTATTTACGACGTTATTGAGCA
GTGTTCCCCGCGCCAGCAGGGATAAATCG	AAACGAAAGAGGCTATGCGGTTGTTTATCGGT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CCCCGATAGCGACGCTTCTGTAGTCACTGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GTGAGTTCGGTTTTAATTTCGTCGCTAAGCTGC
GTGTTCCCCGCGCCAGCGGGGATAAGCCG	CGTCACTTTCTGACATTTTATTCAGTTCGTTA
GTGTTCCCCGTGCCAGCGGGGATAAACCG	TCATTTCTGGACGGGGCTGTGTGACGAATACG
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGTCCAATTAACCCAAACTTTGCGCGCTTAAT
ATGTTCCCCGCGCTAGCGGGGATAAACCG	GGATATGTGAAGTTCAGGTAGCCCATTACGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTGATCGAGAGTGCGAAGAGGCAGAACGGGCA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CAGGTTATGCGCAAAAATTAATTCATATTATA
GTGTTCCCCGCGCCAGCAGGGATAAACCG	GACGAGTTCTGGAAATGGTTAGCTGATAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CGTTCATCGGCAGCGTCACGCAATATGAAGAT
GTGTTCCCCGCGCCAACAAGGATAGCCGT

Protein	Signature genes	Signature genes Name	Protein_function
CP036168.1\|QBG30480.1\|984939_985110_+\|6-pyruvoyl-tetrahydrobiopterin-synthase	unknown	unknown	unknown
CP036168.1\|QBG30479.1\|984648_985011_-\|6-carboxytetrahydropterin-synthase-QueD	unknown	unknown	gnl\|CDD\|238264
CP036168.1\|QBG30477.1\|980716_981388_+\|7-carboxy-7-deazaguanine-synthase-QueE	unknown	unknown	gnl\|CDD\|275126
CP036168.1\|QBG30472.1\|975148_975505_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	unknown	unknown	gnl\|CDD\|226136
CP036168.1\|QBG30471.1\|972830_975065_+\|GTP-diphosphokinase	unknown	unknown	gnl\|CDD\|182797
CP036168.1\|QBG30484.1\|989843_990797_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP036168.1\|QBG30473.1\|975470_975767_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	unknown	unknown	gnl\|CDD\|226194
CP036168.1\|QBG30470.1\|971483_972779_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	unknown	unknown	gnl\|CDD\|237291
CP036168.1\|QBG30487.1\|993916_995473_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP036168.1\|QBG30483.1\|989021_989756_+\|phosphoadenosine-phosphosulfate-reductase	unknown	unknown	gnl\|CDD\|234997
CP036168.1\|QBG30486.1\|991241_993905_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP036168.1\|QBG30469.1\|968669_971426_-\|two-component-sensor-histidine-kinase-BarA	unknown	unknown	gnl\|CDD\|236848
CP036168.1\|QBG30482.1\|987233_988946_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	unknown	unknown	gnl\|CDD\|237402
CP036168.1\|QBG30474.1\|976534_977335_+\|nucleoside-triphosphate-pyrophosphohydrolase	unknown	unknown	gnl\|CDD\|236569
CP036168.1\|QBG30468.1\|967483_968626_+\|glycerate-kinase	unknown	unknown	gnl\|CDD\|224840
CP036168.1\|QBG30475.1\|977562_979200_+\|CTP-synthase-(glutamine-hydrolyzing)	unknown	unknown	gnl\|CDD\|235437
CP036168.1\|QBG30481.1\|985434_987234_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	unknown	unknown	gnl\|CDD\|182862
CP036168.1\|QBG30476.1\|979282_980581_+\|phosphopyruvate-hydratase	unknown	unknown	gnl\|CDD\|234617
CP036168.1\|QBG30485.1\|990912_991137_-\|hypothetical-protein	unknown	unknown	unknown
CP036168.1\|QBG30478.1\|983763_984561_+\|MBL-fold-metallo-hydrolase	unknown	unknown	gnl\|CDD\|224158

Protein	Function_ID	Function_description	E-value
CP036168.1\|QBG30479.1\|984648_985011_-\|6-carboxytetrahydropterin-synthase-QueD	gnl\|CDD\|238264	cd00470, PTPS, 6-pyruvoyl tetrahydropterin synthase (PTPS). Folate derivatives are essential cofactors in the biosynthesis of purines, pyrimidines, and amino acids, as well as formyl-tRNA. Mammalian cells are able to utilize pre-formed folates after uptake by a carrier-mediated active transport system. Most microbes and plants lack this system and must synthesize folates de novo from guanosine triphosphate. One enzyme from this pathway is PTPS which catalyzes the conversion of dihydroneopterin triphosphate to 6-pyruvoyl tetrahydropterin. The functional enzyme is a hexamer of identical subunits.	2.78454e-58
CP036168.1\|QBG30477.1\|980716_981388_+\|7-carboxy-7-deazaguanine-synthase-QueE	gnl\|CDD\|275126	TIGR04322, organic_radical_activating_enzyme, putative 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. Members of this radical SAM domain protein family appear to be the E. coli form of the queuosine biosynthesis protein QueE. QueE is involved in making preQ0 (7-cyano-7-deazaquanine), a precursor of both the bacterial/eukaryotic modified tRNA base queuosine and the archaeal modified base archaeosine. Members occur in species that lack known forms of QueE but usually are not found in queuosine biosynthesis operons. Members of this family tend to form bi-directional best hit matches to members of known (TIGR03365) and putative (TIGR03963) QueE families from other lineages.	1.43874e-155
CP036168.1\|QBG30472.1\|975148_975505_+\|type-II-toxin-antitoxin-system-ParD-family-antitoxin	gnl\|CDD\|226136	COG3609, COG3609, Predicted transcriptional regulators containing the CopG/Arc/MetJ DNA-binding domain [Transcription].	6.12601e-20
CP036168.1\|QBG30471.1\|972830_975065_+\|GTP-diphosphokinase	gnl\|CDD\|182797	PRK10872, relA, (p)ppGpp synthetase I/GTP pyrophosphokinase; Provisional.	0
CP036168.1\|QBG30484.1\|989843_990797_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP036168.1\|QBG30473.1\|975470_975767_+\|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin	gnl\|CDD\|226194	COG3668, ParE, Plasmid stabilization system protein [General function prediction only].	1.63617e-13
CP036168.1\|QBG30470.1\|971483_972779_+\|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD	gnl\|CDD\|237291	PRK13168, rumA, 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD.	0
CP036168.1\|QBG30487.1\|993916_995473_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP036168.1\|QBG30483.1\|989021_989756_+\|phosphoadenosine-phosphosulfate-reductase	gnl\|CDD\|234997	PRK02090, PRK02090, phosphoadenylyl-sulfate reductase.	2.40487e-139
CP036168.1\|QBG30486.1\|991241_993905_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP036168.1\|QBG30469.1\|968669_971426_-\|two-component-sensor-histidine-kinase-BarA	gnl\|CDD\|236848	PRK11107, PRK11107, hybrid sensory histidine kinase BarA; Provisional.	0
CP036168.1\|QBG30482.1\|987233_988946_+\|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit	gnl\|CDD\|237402	PRK13504, PRK13504, NADPH-dependent assimilatory sulfite reductase hemoprotein subunit.	0
CP036168.1\|QBG30474.1\|976534_977335_+\|nucleoside-triphosphate-pyrophosphohydrolase	gnl\|CDD\|236569	PRK09562, mazG, nucleoside triphosphate pyrophosphohydrolase; Reviewed.	8.52469e-158
CP036168.1\|QBG30468.1\|967483_968626_+\|glycerate-kinase	gnl\|CDD\|224840	COG1929, COG1929, Glycerate kinase [Carbohydrate transport and metabolism].	0
CP036168.1\|QBG30475.1\|977562_979200_+\|CTP-synthase-(glutamine-hydrolyzing)	gnl\|CDD\|235437	PRK05380, pyrG, CTP synthetase; Validated.	0
CP036168.1\|QBG30481.1\|985434_987234_+\|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit	gnl\|CDD\|182862	PRK10953, cysJ, NADPH-dependent assimilatory sulfite reductase flavoprotein subunit.	0
CP036168.1\|QBG30476.1\|979282_980581_+\|phosphopyruvate-hydratase	gnl\|CDD\|234617	PRK00077, eno, enolase; Provisional.	0
CP036168.1\|QBG30478.1\|983763_984561_+\|MBL-fold-metallo-hydrolase	gnl\|CDD\|224158	COG1237, COG1237, Metal-dependent hydrolases of the beta-lactamase superfamily II [General function prediction only].	8.44116e-102

>CP036168.1|QBG30477.1|980716_981388_+|7-carboxy-7-deazaguanine-synthase-QueE
MQYPINEMFQTLQGEGYFTGVPAIFIRLQGCPVGCAWCDTKHTWDKLSDREVSLFSILAKTKESDKWGAASSEDLLAVINRQGYTARHVVITGGEPCIHDLMPLTDLLEKSGFSCQIETSGTHEVRCTPNTWVTVSPKVNMRGGYDVLSQALERANEIKHPVGRVRDIEALDELLATLSDDKPRVIALQPISQKEDATRLCIETCIARNWRLSMQTHKYLNIA
>CP036168.1|QBG30476.1|979282_980581_+|phosphopyruvate-hydratase
MSKIVKVIGREIIDSRGNPTVEAEVHLEGGFVGMAAAPSGASTGSREALELRDGDKSRFLGKGVTKAVGAVNGPIAQAILGKDAKDQAGIDKIMIDLDGTENKSNFGANAILAVSLANAKAAAAAKGMPLYEHIAELNGTPGKYSMPVPMMNIINGGEHADNNVDIQEFMIQPVGAKTVKEAIRMGSEVFHHLAKVLKGKGMNTAVGDEGGYAPNLGSNAEALAVIAEAVKAAGYELGKDITLAMDCAASEFYKDGKYVLAGEGNKAFTSEEFTHFLEELTKQYPIVSIEDGLDESDWDGFAYQTKVLGDKIQLVGDDLFVTNTKILKEGIEKGIANSILIKFNQIGSLTETLAAIKMAKDAGYTAVISHRSGETEDATIADLAVGTAAGQIKTGSMSRSDRVAKYNQLIRIEEALGEKAPYNGRKEIKGQA
>CP036168.1|QBG30475.1|977562_979200_+|CTP-synthase-(glutamine-hydrolyzing)
MTTNYIFVTGGVVSSLGKGIAAASLAAILEARGLNVTIMKLDPYINVDPGTMSPIQHGEVFVTEDGAETDLDLGHYERFIRTKMSRRNNFTTGRIYSDVLRKERRGDYLGATVQVIPHITNAIKERVLEGGEGHDVVLVEIGGTVGDIESLPFLEAIRQLAVDIGREHALFMHLTLVPYLAAAGEVKTKPTQHSVKELLSIGIQPDILICRSDRAVPANERAKIALFCNVPEKAVISMKDVDSIYKIPGLLKSQGLDDYICKRFSLNCPEANLSEWEQVIYEEANPAGEVTIGMVGKYIELPDAYKSVIEALKHGGLKNRVTVNIKLIDSQDVETRGVEILKDLDAILIPGGFGYRGVEGKIATARYARENNIPYLGICLGMQVALIEFARNVAGMDNANSTEFVPDCKYPVVALITEWRDEDGNVEVRSEKSDLGGTMRLGAQQCQLSDDSLVRQLYGASTIVERHRHRYEVNNMLLKQIEAAGLRVAGRSGDDQLVEIIEVPNHPWFVACQFHPEFTSTPRDGHPLFAGFVKAANEHQKRQAK
>CP036168.1|QBG30474.1|976534_977335_+|nucleoside-triphosphate-pyrophosphohydrolase
MTTNHQIDRLLTLMQRLRDPENGCPWDKEQTFASIAPYTLEETYEVLDAIAREDFDDLRGELGDLLFQVVFYAQMAQEEGRFDFNDICAAISDKLERRHPHVFGELSADNSEEALVRWEQIKTEERAQKAQHSALDDIPRSFPALMRAQKIQKRCSNVGFDWTTLGPVVDKVYEEIDEVMFEARQAVVDQAKLEEEMGDLLFATVNMARHLGTKAELALQKANDKFERRFREVERIVAARGLEMTGVDLETMEEVWQEVKRQEIDL
>CP036168.1|QBG30473.1|975470_975767_+|type-II-toxin-antitoxin-system-RelE/ParE-family-toxin
MRMVKLTPKASEDLENIWHYGWQHFGEIQADRYINHLSEIFSIMSANNIGTPRPELGEYIYALPFKRHIIYFIQSVTEVIVIRILSQNQDAGKHVNWL
>CP036168.1|QBG30472.1|975148_975505_+|type-II-toxin-antitoxin-system-ParD-family-antitoxin
MFLTYISFPVYSYVRFILTVEAVMARTMTVDLGDELREFIESLIESGDYRTQSEVIRESLRLLREKQAESRLQALRELLAEGLNSGEPQAWEKDAFLRKVKTGMIKPDENGKINAKGQ
>CP036168.1|QBG30471.1|972830_975065_+|GTP-diphosphokinase
MVAVRSAHINKAGEFDPKKWIASLGISSQQSCERLAETWAYCLQQTQGHPDADLLLWRGVEMVEILSTLSMDIDTLRAALLFPLADANVVSEDVLRESVGKSIVTLIHGVRDMAAIRQLNATHNDSVSSEQVDNVRRMLLAMVDDFRCVVIKLAERIAHLREVKEAPEDERVLAAKECTNIYAPLANRLGIGQLKWELEDYCFRYLHPAEYKRIAKLLHERRLDREHYIEEFVGHLRAEMKNEGVQAEVYGRPKHIYSIWRKMQKKHLAFDELFDVRAVRIVAERLQDCYAALGIVHTHYRHLPDEFDDYVANPKPNGYQSIHTVVLGPGGKTVEIQIRTKQMHEDAELGVAAHWKYKEGAASGGVRSGHEDRIAWLRKLIAWQEEMADSGEMLDEVRSQVFDDRVYVFTPKGDVVDLPAGSTPLDFAYHIHSDVGHRCIGAKIGGRIVPFTYQLQMGDQIEIITQKQPNPSRDWLNPNLGYVTTSRGRSKIHAWFRKQDRDKNIQAGRQILDDELAHLGISLKEAEKHLLPRYNFNELEELLAAIGGGDIRLNQMVNFLQSQFNKPSAEEQDAAALKQLQQKTYAPQNRRKDDGRVVVEGVGNLMHHIARCCQPIPGDEIVGFITQGRGISVHRADCEQLAELRSHAPERIVEAVWGESYSAGYSLVVRVQANDRSGLLRDITTILANEKVNVLGVASRSDIKQQIATIDMTIEIYNLQVLGRVLGKLNQVPDVIDARRLHGG
>CP036168.1|QBG30470.1|971483_972779_+|23S-rRNA-(uracil(1939)-C(5))-methyltransferase-RlmD
MAQFYSAKRRVTTRQIITVKVNDLDSFGQGVARHNGKALFIPGLLPEESAEVIITEDKKQFARARVSRRLNDSPERETPRCPHFGVCGGCQQQHVSIALQQRSKSAALARLMKHEVNDIIAGAPWGYRRRARLSLNCPPDKPLQMGFRKAGSSDIVNVEQCPVLAPQLAALLPRIRACLASLHGTRHLGHVELVQAGSGTLMILRHTAPLSAADKEKLERFSHSEGLSLFLAPFSEILETVSGEAPWYDSHGLRLAFSPRDFIQVNEAVNQQMVARALEWLDVRAEDRVLDLFCGMGNFTLPLATRAASVIGVEGVPALVEKGRENAIRNGLHNVTFFHENLEEDVTKQPWAKNGFDKVLLDPARAGATGVMRHIIKLKPIRIVYVSCNPATLARDSEALVNAGYEVTRLAMLDMFPHTGHLESMVLFERM
>CP036168.1|QBG30469.1|968669_971426_-|two-component-sensor-histidine-kinase-BarA
MTNYSLRARMMILILAPTVLIGLLLSIFFVVHRYNDLQRQLEDAGASIIEPLAVSSEYGMNLQNRESIGQLISVLHRRHSDIVRAISVYDDHNRLFVTSNFHLDPSQMQLPAGAPFPRRLSVDRHGDIMILRTPIISESYSPDESAIADAKNTKNMLGYVALELDLKSVRLQQYKEIFISSVMMLFCIGIALIFGWRLMRDVTGPIRNMVNTVDRIRRGQLDSRVEGFMLGELDMLKNGINSMAMSLAAYHEEMQHNIDQATSDLRETLEQMEIQNVELDLAKKRAQEAARIKSEFLANMSHELRTPLNGVIGFTRLTLKTELNPTQRDHLNTIERSANNLLALINDVLDFSKLEAGKLILESIPFPLRNTLDEVVTLLAHSSHDKGLELTLNIKNDVPDNVIGDPLRLQQVITNLVGNAIKFTESGNIDILVEKRALSNTKVQIEVQIRDTGIGIPERDQSRLFQAFRQADASISRRHGGTGLGLVITQKLVNEMGGDISFHSQPNRGSTFWFHINLDLNPNVIIDGPSTACLAGKRLAYVEPNATAAQCTLDLLSDTPVEVVYSPTFSALPLAHYDIMILSVPVTFREPLTMQHERLAKAASMTDFLLLALPCHAQINAEKLKQGGAAACLLKPLTSTRLLPALTEYCQLNHHPEPLLMDTSKITMTVMAVDDNPANLKLIGALLEDKVQHVELCDSGHQAVDRAKQMQFDLILMDIQMPDMDGIRACELIHQLPHQQQTPVIAVTAHAMAGQKEKLLSAGMNDYLAKPIEEEKLHNLLLRYKPGANVAARLMAPEPAEFIFNPNATLDWQLALRQAAGKPDLARDMLQMLIDFLPEVRNKIEEQLVGENPNGLVDLVHKLHGSCGYSGVPRMKNLCQLIEQQLRSGVHEEELEPEFLELLDEMDNVAREAKKILG
>CP036168.1|QBG30468.1|967483_968626_+|glycerate-kinase
MKIVIAPDSYKESLSALEVATAIEQGFREIWPDADYLKLPLADGGEGTVEAMVEATAGRIVHVEVTGPLGHRVNAFYGLSGDARSAFIEMAAASGLEQVPPAQRDPLKTTSWGTGELIRHALDAGVEHIIIGIGGSATNDGGAGMVQALGARLRDAQGNDIAQGGIGLETLASIDISGLDKRLSACHIEVACDVTNPLTGKEGASAVFGPQKGATPEMIERLDTALTRYAHLIARDLHVDVLDLAGGGAAGGMGAALYAFCGAQLRRGIEIVTDALHLEACLADADLVITGEGRIDSQTIHGKVPIGVANIAKRYNKPVIGIAGSLTADVSVVHEHGLDAVFSVIYTICTLEDALKNASENVRMTARNVAATLKAGQQLR
>CP036168.1|QBG30478.1|983763_984561_+|MBL-fold-metallo-hydrolase
MALRIRVLLENHKGAGADKSLKVRPGLSLLVEDESTSILFDTGPDGSFMQNALAMGIDLSDVSAVVLSHGHYDHCGGVPWLPDSSRIICHPDIARERYAAMTFLGITRKIKKLSCEVDYSRYRMMYTRDPLPIGENFIWSGEIPVVAPEAYGIFGGHDAEPDSILDEGVLIYQSTKGLVIITGCGHRGIANIVRHCQNITGIKRIYALVGGFHLRCASPFTLWRVRRFLQEHKPEKLCGCHCTGAWGRLWLPEITAPATGDVLRF
>CP036168.1|QBG30479.1|984648_985011_-|6-carboxytetrahydropterin-synthase-QueD
MSTTLYKDFTFEAAHRLPHVPEGHKCGRLHGHSFMVRLEITGEVDPHTGWIMDFADLKAAFKPTYDRLDHYYLNDIPGLSNPTSEVLAKWIWDQVKPVVPLLSAVMVKETCTAGCVYRGE
>CP036168.1|QBG30480.1|984939_985110_+|6-pyruvoyl-tetrahydrobiopterin-synthase
MPFRHVRQAVSGFKGEIFIQRGGHDELSGNKKTAVGYRKAHFLSLTKTILRLVTGN
>CP036168.1|QBG30481.1|985434_987234_+|NADPH-dependent-assimilatory-sulfite-reductase-flavoprotein-subunit
MTTPAPLTGLLPLNPEQLARLQAATTDLTPEQLAWVSGYFWGVLNPRSGAVAVTPVPERKMPRVTLISASQTGNARRVAEALRDDLLAANLNVTLVNAGDYKFKQIASEKLLVIVTSTQGEGEPPEEAVALHKFLFSKKAPKLENTAFAVFSLGDTSYEFFCQSGKDFDSKLAELGGERLLDRVDADVEYQAAASEWRARVVDVLKSRAPVAAPSQSVATGAVNDIHTSPYTKDAPLIATLSVNQKITGRNSEKDVRHIEIDLGDSGLRYQPGDALGVWYQNDPALVKELVELLWLKGDEPVTVDGKTLPLAEALEWHFELTVNTANIVENYATLTRSESLLPLVGDKAQLQHYAATTPIVDMVRFSPAQLDAQALIDLLRPLTPRLYSIASAQAEVESEVHITVGVVRYDIEGRARAGGASSFLADRVEEEGEVRVFIEHNDNFRLPANPETPVIMIGPGTGIAPFRSFMQQRAAEGVEGKNWLFFGNPHFTEDFLYQVEWQRYVKEGVLSRIDLAWSRDQKEKIYVQDKLREQGAELWRWINDGAHIYVCGDARRMAADVEKALLEVIAEFGGMDLESADEYLSELRVERRYQRDVY
>CP036168.1|QBG30482.1|987233_988946_+|assimilatory-sulfite-reductase-(NADPH)-hemoprotein-subunit
MSEKHPGPLVVEGKLSDAERMKLESNYLRGTIAEDLNDGLTGGFKGDNFLLIRFHGMYQQDDRDIRAERAAQKLEPRHAMLLRCRLPGGVITTTQWQAIDKFAADNTIYGSIRLTNRQTFQFHGILKKNVKPVHQMLHSVGLDALATANDMNRNVLCTSNPYESQLHAEAYEWAKKISEHLLPRTRAYAEIWLDQEKVATTDEEPILGQTYLPRKFKTTVVIPPQNDIDLHANDMNFVAIAENGKLVGFNLLVGGGLSIEHGNKKTYARTASEFGYLPLEHTLAVAEAVVTTQRDWGNRTDRKNAKTKYTLERVGLETFKAEVERRAGIKFEPIRPYEFTGRGDRIGWVKGIDDKWHLTLFIENGRILDYPGRPLKTGLLEIAKIHQGEFRITANQNLIIASVPESQKAKIETLARDHGLMNAVKPQRENSMACVSFPTCPLAMAEAERFLPSFTDKVEAILEKHGIPDEHIVMRVTGCPNGCGRAMLAEIGLVGKAPGRYNLHLGGNRIGSRIPRMYKENIAEPDILASLDELIGRWAKEREAGEGFGDFTVRAGIIRPVLDPARDFWE
>CP036168.1|QBG30483.1|989021_989756_+|phosphoadenosine-phosphosulfate-reductase
MSQLDLNALNELPKVDRVMALAETNAQLEKLSAEERVAWALENLPGEYVLSSSFGIQAAVSLHLVNQIRPDIPVILTDTGYLFPETYQFIDELTDKLKLNLKVYRAGESPAWQEARYGKLWEQGVEGIEKYNEINKVEPMNRALKELKAQTWFAGLRREQSGSRAHLPVLAIQRGVFKVLPIIDWDNRTVYQYLQKHGLKYHPLWDQGYLSVGDTHTTRKWEPGMAEEETRFFGLKRECGLHEG
>CP036168.1|QBG30484.1|989843_990797_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP036168.1|QBG30485.1|990912_991137_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP036168.1|QBG30486.1|991241_993905_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP036168.1|QBG30487.1|993916_995473_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE

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Crispr_ID: CP036168_3

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP036168_3

999798-1000375

TypeI-E

I-E

Consensus_repeat	Method
GTGTTCCCCGCGCCAGCGGGGATAAAC	PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	CRT

9 spacers

cas2,cas1,cas6e,cas5,cas7,cse2gr11,cas8e,cas3

The CRISPR arrays of CP036168_3

>merge|CP036168|3|999798-1000375|PILER-CR,CRISPRCasFinder,CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCGGAACGAGTAATCTTTGTTTTCCCCGTACCTTCGTGTTCCCCGCGCCAGCGGGGATAAACCGTTCTTGAATATGATTGCGGGTATATGTGGATAGTGTTCCCCGCGCCAGCGGGGATAAACCGTCTGGTTATAACATCGCAGCAAAATCAAAAGAGTGTTCCCCGCGCCAGCGGGGATAAACCGGCACTATTTCGAATGTCTCGACGCCAGATTTAGTGTTCCCCGCGCCAGCGGGGATAAACCGAACGAATTGAGACTATTAGAGATTATTCGCCTGTGTTCCCCGCGCCAGCGGGGATAAACCGGCAACCCATTAATTAACTAAGCAGTAATAAACGTGTTCCCCGCGCCAGCGGGGATAAACCGTGACGAGGTGCGAGCGATGGTATCAAGGCCTAGTGTTTCCCGCGCCAGCGGGGATAAACCGGGTTAACCAGGGGTTTTTCCCCACTATTTCGCGTGTTCCCCGCGCCAGCGGGGATAAACCGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAAATGTTCCCCGCGCCAGCGGGGATAAACAC

>CP036168|3|2|999798-1000373|PILER-CR
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGAACGAGTAATCTTTGTTTTCCCCGTACCTTC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGAACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGGCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGTGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAAC	CGGGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAAC	CGAGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAAC

>CP036168|3|3|999798-1000375|CRISPRCasFinder
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACGAGTAATCTTTGTTTTCCCCGTACCTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

>CP036168|3|2|999798-1000375|CRT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GAACGAGTAATCTTTGTTTTCCCCGTACCTTC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TTCTTGAATATGATTGCGGGTATATGTGGATA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TCTGGTTATAACATCGCAGCAAAATCAAAAGA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCACTATTTCGAATGTCTCGACGCCAGATTTA
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AACGAATTGAGACTATTAGAGATTATTCGCCT
GTGTTCCCCGCGCCAGCGGGGATAAACCG	GCAACCCATTAATTAACTAAGCAGTAATAAAC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	TGACGAGGTGCGAGCGATGGTATCAAGGCCTA
GTGTTTCCCGCGCCAGCGGGGATAAACCG	GGTTAACCAGGGGTTTTTCCCCACTATTTCGC
GTGTTCCCCGCGCCAGCGGGGATAAACCG	AGGGGCGTTCCGCAGTCGACAAGGGCTGAAAA
ATGTTCCCCGCGCCAGCGGGGATAAACAC

Protein	Signature genes	Signature genes Name	Protein_function
CP036168.1\|QBG30499.1\|1005200_1005512_+\|cell-division-protein-FtsB	unknown	unknown	gnl\|CDD\|179156
CP036168.1\|QBG30500.1\|1005530_1006241_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	unknown	unknown	gnl\|CDD\|234670
CP036168.1\|QBG30494.1\|1000389_1001436_-\|aminopeptidase	unknown	unknown	gnl\|CDD\|182299
CP036168.1\|QBG30502.1\|1006716_1007766_+\|tRNA-pseudouridine(13)-synthase-TruD	unknown	unknown	gnl\|CDD\|234884
CP036168.1\|QBG30484.1\|989843_990797_-\|SPI-1-type-III-secretion-system-effector-SopD	unknown	unknown	gnl\|CDD\|185277
CP036168.1\|QBG30490.1\|997112_997859_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	cas5	cd09645_cas5_CAS-I-E	gnl\|CDD\|187776
CP036168.1\|QBG30493.1\|999407_999701_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	cas2	cd09648_cas2_CAS-I-E	gnl\|CDD\|236930
CP036168.1\|QBG30491.1\|997840_998491_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	cas6e	cd09664_cas6e_CAS-I-E	gnl\|CDD\|273869
CP036168.1\|QBG30485.1\|990912_991137_-\|hypothetical-protein	unknown	unknown	unknown
CP036168.1\|QBG30496.1\|1002604_1004044_+\|sulfate-adenylyltransferase-subunit-CysN	unknown	unknown	gnl\|CDD\|235349
CP036168.1\|QBG30487.1\|993916_995473_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	cas8e	cd09669_cas8e_CAS-I-E	gnl\|CDD\|274192
CP036168.1\|QBG30486.1\|991241_993905_+\|CRISPR-associated-helicase/endonuclease-Cas3	cas3	COG1203_cas3_CAS-I	gnl\|CDD\|224124
CP036168.1\|QBG30488.1\|995469_996030_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	cse2gr11	cd09731_cse2gr11_CAS-I-E	gnl\|CDD\|187862
CP036168.1\|QBG30489.1\|996043_997102_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	cas7	pfam09344_cas7_CAS-I-E	gnl\|CDD\|273843
CP036168.1\|QBG30497.1\|1004030_1004636_+\|adenylyl-sulfate-kinase	unknown	unknown	gnl\|CDD\|179661
CP036168.1\|QBG30498.1\|1004653_1005010_+\|DUF3561-family-protein	unknown	unknown	gnl\|CDD\|371891
CP036168.1\|QBG30501.1\|1006240_1006720_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	unknown	unknown	gnl\|CDD\|178851
CP036168.1\|QBG30492.1\|998487_999408_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	cas1	cd09719_cas1_CAS-I-E	gnl\|CDD\|274693
CP036168.1\|QBG30503.1\|1007746_1008508_+\|5'/3'-nucleotidase-SurE	unknown	unknown	gnl\|CDD\|234732
CP036168.1\|QBG30495.1\|1001686_1002595_+\|sulfate-adenylyltransferase-subunit-2	unknown	unknown	gnl\|CDD\|235375

Protein	Function_ID	Function_description	E-value
CP036168.1\|QBG30499.1\|1005200_1005512_+\|cell-division-protein-FtsB	gnl\|CDD\|179156	PRK00888, ftsB, cell division protein FtsB; Reviewed.	1.08865e-64
CP036168.1\|QBG30500.1\|1005530_1006241_+\|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase	gnl\|CDD\|234670	PRK00155, ispD, D-ribitol-5-phosphate cytidylyltransferase.	6.81071e-118
CP036168.1\|QBG30494.1\|1000389_1001436_-\|aminopeptidase	gnl\|CDD\|182299	PRK10199, PRK10199, alkaline phosphatase isozyme conversion aminopeptidase; Provisional.	0
CP036168.1\|QBG30502.1\|1006716_1007766_+\|tRNA-pseudouridine(13)-synthase-TruD	gnl\|CDD\|234884	PRK00984, truD, tRNA pseudouridine synthase D; Reviewed.	0
CP036168.1\|QBG30484.1\|989843_990797_-\|SPI-1-type-III-secretion-system-effector-SopD	gnl\|CDD\|185277	PRK15379, PRK15379, type III secretion system effector SopD.	0
CP036168.1\|QBG30490.1\|997112_997859_+\|type-I-E-CRISPR-associated-protein-Cas5/CasD	gnl\|CDD\|187776	cd09645, Cas5_I-E, CRISPR/Cas system-associated RAMP superfamily protein Cas5. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Cas5 is a RAMP superfamily protein; Subunit of the Cascade complex.	7.90971e-48
CP036168.1\|QBG30493.1\|999407_999701_+\|type-I-E-CRISPR-associated-endoribonuclease-Cas2	gnl\|CDD\|236930	PRK11558, PRK11558, putative ssRNA endonuclease; Provisional.	1.1867e-62
CP036168.1\|QBG30491.1\|997840_998491_+\|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE	gnl\|CDD\|273869	TIGR01907, CRISPR_system_Cascade_subunit_CasE, CRISPR-associated protein Cas6/Cse3/CasE, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1974 from Chlorobium tepidum, is found in the Ecoli subtype of CRISPR/Cas regions and is designated Cse3 (CRISPR/Cas Subtype Ecoli protein 3). The representative of this family from Thermus thermophilus HB8 (TTHB192) has been crystallized and found to have a structure consisting of two domains with opposing parallel beta-sheets known as a beta-sheet platform. This structure is similar to those found in the Sex-lethal protein and poly(A)-binding protein. This structure is consistent with an RNA-binding function.	1.11215e-74
CP036168.1\|QBG30496.1\|1002604_1004044_+\|sulfate-adenylyltransferase-subunit-CysN	gnl\|CDD\|235349	PRK05124, cysN, sulfate adenylyltransferase subunit 1; Provisional.	0
CP036168.1\|QBG30487.1\|993916_995473_+\|type-I-E-CRISPR-associated-protein-Cse1/CasA	gnl\|CDD\|274192	TIGR02547, CRISPR_system_Cascade_subunit_CasA, CRISPR type I-E/ECOLI-associated protein CasA/Cse1. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model family, represented by CT1972 from Chlorobium tepidum, is found in Ecoli subtype CRISPR/Cas regions of many bacteria, most of which are mesophiles, and not in Archaea. It is designated Cse1.	0
CP036168.1\|QBG30486.1\|991241_993905_+\|CRISPR-associated-helicase/endonuclease-Cas3	gnl\|CDD\|224124	COG1203, COG1203, CRISPR-associated helicase Cas3 [Defense mechanisms].	0
CP036168.1\|QBG30488.1\|995469_996030_+\|type-I-E-CRISPR-associated-protein-Cse2/CasB	gnl\|CDD\|187862	cd09731, Cse2_I-E, CRISPR/Cas system-associated protein Cse2. CRISPR (Clustered Regularly Interspaced Short Palindromic Repeats) and associated Cas proteins comprise a system for heritable host defense by prokaryotic cells against phage and other foreign DNA; Small alpha-helical protein; also known as Cse2/CasB/YgcK family; specific gene for I-E subtype;.	8.53741e-34
CP036168.1\|QBG30489.1\|996043_997102_+\|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC	gnl\|CDD\|273843	TIGR01869, CRISPR_system_Cascade_subunit_CasC, CRISPR-associated protein Cas7/Cse4/CasC, subtype I-E/ECOLI. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This family is represented by CT1975 of Chlorobium tepidum and is part of the Ecoli subtype of CRISPR/Cas locis. It is designated Cse4, for CRISPR/Cas Subtype Ecoli protein 4.	2.67517e-131
CP036168.1\|QBG30497.1\|1004030_1004636_+\|adenylyl-sulfate-kinase	gnl\|CDD\|179661	PRK03846, PRK03846, adenylylsulfate kinase; Provisional.	4.61291e-146
CP036168.1\|QBG30498.1\|1004653_1005010_+\|DUF3561-family-protein	gnl\|CDD\|371891	pfam12084, DUF3561, Protein of unknown function (DUF3561). This family of proteins is functionally uncharacterized. This protein is found in bacteria. Proteins in this family are about 110 amino acids in length.	4.85353e-49
CP036168.1\|QBG30501.1\|1006240_1006720_+\|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase	gnl\|CDD\|178851	PRK00084, ispF, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase; Reviewed.	3.20925e-104
CP036168.1\|QBG30492.1\|998487_999408_+\|type-I-E-CRISPR-associated-endonuclease-Cas1	gnl\|CDD\|274693	TIGR03638, cas1_ECOLI, CRISPR-associated endonuclease Cas1, subtype I-E/ECOLI. The CRISPR-associated protein Cas1 is virtually universal to CRISPR systems. CRISPR, an acronym for Clustered Regularly Interspaced Short Palindromic Repeats, is prokaryotic immunity system for foreign DNA, mostly from phage. CRISPR systems belong to different subtypes, distinguished by both nature of the repeats, the makeup of the cohort of associated Cas proteins, and by molecular phylogeny within the more universal Cas proteins such as this one. This model is of type EXCEPTION and provides more specific information than the EQUIVALOG model TIGR00287. It describes the Cas1 protein particular to the ECOLI subtype of CRISPR/Cas system.	1.21084e-157
CP036168.1\|QBG30503.1\|1007746_1008508_+\|5'/3'-nucleotidase-SurE	gnl\|CDD\|234732	PRK00346, surE, 5'(3')-nucleotidase/polyphosphatase; Provisional.	1.7078e-146
CP036168.1\|QBG30495.1\|1001686_1002595_+\|sulfate-adenylyltransferase-subunit-2	gnl\|CDD\|235375	PRK05253, PRK05253, sulfate adenylyltransferase subunit CysD.	0

>CP036168.1|QBG30493.1|999407_999701_+|type-I-E-CRISPR-associated-endoribonuclease-Cas2
MSMVVVVTENVPPRLRGRLAVWLLEVRAGVYVGDTSKRIREMIWQQITQLGGVGNVVMAWATNTESGFEFQTWGENRRIPVDLDGLRLVSFLPVENQ
>CP036168.1|QBG30492.1|998487_999408_+|type-I-E-CRISPR-associated-endonuclease-Cas1
MTFVPLNPIPLKDRTSMIFLQYGQIDVLDGAFVLIDKTGIRTHIPVGSVACIMLEPGTRVSHAAVRLASTVGTLLVWVGEAGVRVYSSGQPGGARADKLLYQAKLALDDDLRLKVVRKMYELRFREPPPARRSVEQLRGIEGSRVRATYALLAKQYGVKWHGRNYDPKDWEKGDVVNRCISAATSCLYGISEAAILAAGYAPAIGFIHSGKPLSFVYDIADIIKFESVVPKAFEIAARHPAEPDKEVRLACRDIFRSSKLTGKLIPLIEEVLAAGEIEPPQPAPDMLPPAIPEPESLGDSGHRGHG
>CP036168.1|QBG30491.1|997840_998491_+|type-I-E-CRISPR-associated-protein-Cas6/Cse3/CasE
MYLSRITLHTSELSPAQLLHLVERGEYVMHQWLWDLFPGSKERQFLYRREELQGAFRFFVLSQEQPAASAIFDVQTRPFAPTLSAGQTLRFNLRANPTVCKNGKRHDLLMEAKRQRKTQGDSQDIWSYQQQAALTWLARQGEQNGFTLREASVDAYRQQQIRRGKDRQMIQFSSVDYTGVLVINEPALFLQRLAQGFGKSRAFGCGMMMIKPGDDA
>CP036168.1|QBG30490.1|997112_997859_+|type-I-E-CRISPR-associated-protein-Cas5/CasD
MSQYLVFQLHGPMASWGVDAPGEVRHSHELPSRSALLGLLAAALGIRRDEEERLNAFNRHYQFLLCASGNPRWARDYHTVQMPKEVRKARYFSRREELQDPELLSALISRRDYYTDAWWMIAVSATPDAPYTLAQLQTSLQHPVFPLYLGRKSHPLALPLAPQLLEGSAAGVLREAYRWYQDQFNALKLPLPRLQNECWWEGEHDGLTASKILRRRDMPLSRQQWLFGERSVNQGPWLRKEDACISQE
>CP036168.1|QBG30489.1|996043_997102_+|type-I-E-CRISPR-associated-protein-Cas7/Cse4/CasC
MTTFIQLHLLTAYPAANLNRDDTGAPKTVVLGGATRLRISSQSLKRAWRTSELFEQALAGHIGIRTGRIAREAAQILVDSGIDAKKAVEYVKNIANCFGKVKEDKKPKDELTNAETEQLVHISPAEFEAVKALARRLAEEKRPATEEEAELLRHDRMAVDIAMFGRMLAKKTDFNVEAACQVAHAFGVSETIIEDDFFTAVDDLRQASAEDAGAGHLGETGFGSALFYTYICIDKDLLVKNLNDNEELANKTLRAFTEAALKVSPTGKQNSFASRAYASWALAEKGTDQPRSLAAAFYEPINGTDQLNVAVKRITSLHKNMNKVYGQRTDTASFDVMNQQGSMEDVLDFICA
>CP036168.1|QBG30488.1|995469_996030_+|type-I-E-CRISPR-associated-protein-Cse2/CasB
MSVVTKDDKATLRQWHEELQEKRGLRASLRRSKTVNDACLAEGLHSLLMQTHSLWKNKAPWNVTALAITAALAAHIKFIDEQKSFAAQLGQKKGGDTPVMSKLRFSHLLAVKTPDELLRQLRRAVKLLDGSVNLFSLADDIFCWCQEQNDLLNHHRRQQRPTEFLRIRWALEYYQAGDGDTDNEQD
>CP036168.1|QBG30487.1|993916_995473_+|type-I-E-CRISPR-associated-protein-Cse1/CasA
MDNFSLLTTPWLPVRFKDGSTGKLAPVDLADENVVDIAATRADLQGAAWQFLLGLLQCSIAPKRYKNWEDIWFDGLHADVLHKALAPLEHAFQFGAETPSFMQDFEPLSGEKVSIASLLPEIPGAQTTKFNKDHFVKRGVTERFCPHCAALALFSLQLNAPAGGKGYRTGLRGGGPLTTLVELQEYQGERQTPLWRKLWLNVMPQDTADLPLPDQCDATVFPWLAATRTSEQANAVTTPEQVNKLQAYWGMPRRIRLDFATLQSGCCDICGAESDELLGFMTVKNYGVNYDGWRHPLTPYRAPVKDQNAFFSVKPQPGGLIWRDWLGLSQNNQTEANYESPAQVVKVFNARSLTDVKAGIWGFGADFDNMKIRCWYEHHFPLLMTEGLIPDLRKAVQTAARLLSLLRSALKEAWFADAKGARGDFSFIDIDFWNLTQGRFLNLIHDLENGHKPDERLNKWQRELWLFTRHYFDDHVFTNPYESSDLERIMTARKKYFTTSAEKQSAKAAKAKKQEAAE
>CP036168.1|QBG30486.1|991241_993905_+|CRISPR-associated-helicase/endonuclease-Cas3
MSIYHYWGKSRRGETDGGDDYHLLCWHSLDVAAVGYWMVINNIYFIDHYLKKLGIQDKEQAAQFFAWILCWHDIGKFAHSFQQLYRHEALNIFNEPTRHYEKIAHTTLGYMLWNSWLSECPELFPPSSLSVRKSKRVMALWMPVTTGHHGRPPEAIQELDHFRQQDKDAARDFLLRIKALFPLITLPEAWDEDEGIDQFQQLSWFISAAVVLADWTGSASRYFPRTAEKMPVDTYWQQALAKAQTAITLFPSAANVSAFTGIETLFPFIQHPTPLQQKALELDINVDGAQLFILEDVTGAGKTEAALILAHRLMAAGKAQGLYFGLPTMATANAMFERMANTWLALYQPDSRPSLILAHSARRLMDRFNQSIWSVTLSGTEEPDEAQPYSQGCAAWFADSNKKALLAEVGVGTLDQAMMAVMPFKHNNLRLLGLSNKILLADEIHACDAWMSRILEGLIERQASNGNATILLSATLSQQQRDKLVAAFSRGVRRSVQAPLLGHDDYPWLTQVTQTELISQRVDTRKEVERCVDIGWLHSEEACLERIGEAVEKGNCIAWIRNSVDDAIRIYRQLQLSKVVVTENLLLFHSRFAFYDRQRIESQTLNLFGKQSGAQRAGKVIIATQVIEQSLDIDCDEMISDLAPVDLLIQRAGRLQRHIRDRNGLVKKSGQDERETPVLRILAPEWDDAPRENWLSSAMRNSAYVYPDHGRMWLTQRILREQGTIRMPQSARLLIESVYGEDVNMPVGFAKTEQLQEGKFYCDRAFAGQMLLNFAPGYCAEISDSLPEKMSTRLAEESVTLWLAKIVDSVVTPYASGEHAWEMSVLRVRQSWWNKHKDEFEKLDGEPLRKWCAQQHQDKDFATVIVVTDFAACGYSANEGLIGMMGE
>CP036168.1|QBG30485.1|990912_991137_-|hypothetical-protein
MPAQFYIFFRNIYPTNNYYKFFRLFLLEEALKEASSNAFCINQNLKKTTICGESSTFCLNYRHHKGLPTINVLY
>CP036168.1|QBG30484.1|989843_990797_-|SPI-1-type-III-secretion-system-effector-SopD
MPVTLSFGNHQNYTLNESRLAHLLSADKEKAIHMGGWDKVQDHFRAEKKDHALEVLHSIIHGQGRGEPGEMEVNVEDINKIYAFKRLQHLACPAHQDLFTIKMDASQTQFLLMVGDTVISQSNIKDILNISDDAVIESMSREERQLFLQICEVIGSKMTWHPELLQESISTLRKEVTGNAQIKTAVYEMMRPAEAPDHPLVEWQDSLTADEKSMLACINAGNFEPTTQFCKIGYQEVQGEVAFSMMHPCISYLLHSYSPFSEFKPTNSGFLKKLNQDYNDYHAKKMFIDVILEKLYLTHERSLHIGKDGCSRNILLT
>CP036168.1|QBG30494.1|1000389_1001436_-|aminopeptidase
MFSATRRFAVILALGVGFILPAQAASPGPGEIANTQARHIATFFPGRMTGSPAEMLSADYLRQQFTQMGYQSDIRTFNSRFIYTTKDNRKNWHNVTGSTVIAAHEGRVPQQIIIMAHLDTYAPQSDADVDANLGGLTLQGMDDNAAGLGVMLELAARLKDIPTHYGIRFIATSGEEEGKLGAENLLKRMSDAEKKNTLLVINLDNLIVGDKLYFNSGKNTPEAVRTLTRDRALAIARRYGIAANTNPGRNPSYPKGTGCCNDAEVFDKAGISVLSVEATNWNLGKKDGYQQRVKNASFPNGNSWHDVRLDNQQHIDKALPGRIERRSRDVVRIMLPLVKELAKAEKTS
>CP036168.1|QBG30495.1|1001686_1002595_+|sulfate-adenylyltransferase-subunit-2
MDQKRLTHLRQLEAESIHIIREVAAEFANPVMLYSIGKDSSVMLHLARKAFYPGTLPFPLLHVDTGWKFREMYAFRDRTANAYGCELLVHKNPEGVAMGINPFVHGSAKHTDIMKTEGLKQALNKYGFDAAFGGARRDEEKSRAKERIYSFRDRFHRWDPKNQRPELWRNYNGQINKGESIRVFPLSNWTEQDIWQYIWLENIDIVPLYLAAERPVLERDGMLMMVDDDRIDLQPGEVIKKRMVRFRTLGCWPLTGAVESHAQTLPEIIEEMLVSTTSERQGRMIDRDQAGSMELKKRQGYF
>CP036168.1|QBG30496.1|1002604_1004044_+|sulfate-adenylyltransferase-subunit-CysN
MNTILAQQIANEGGVEAWMIAQQHKSLLRFLTCGSVDDGKSTLIGRLLHDTLQIYEDQLSSLHNDSKRHGTQGEKLDLALLVDGLQAEREQGITIDVAYRYFSTERRKFIIADTPGHEQYTRNMATGASTCDLAILLIDARKGVLDQTRRHSFISTLLGIKHLVVAINKMDLVDYREETFARIREDYLTFAEQLPGDLDIRFVPLSALEGDNVAAQSANMRWYSGPTLLEVLETVDIQRAVDRQPMRFPVQYVNRPNLDFRGYAGTLASGSVKVGERIKVLPSGVESSVARIVTFDGDKEEACAGEAITLVLNDDIDISRGDLLLAANETLAPARHAAIDVVWMAEQPLAPGQSYDVKLAGKKTRARIEAIRYQIDINNLTQRDVESLPLNGIGLVEMTFDEPLALDIYQQNPVTGGLIFIDRLSNVTVGAGMVRELDERGATPPVEYSAFELELNALVRRHFPHWDARDLLGDKHGAA
>CP036168.1|QBG30497.1|1004030_1004636_+|adenylyl-sulfate-kinase
MALHDENVVWHSHPVTVAAREQLHGHRGVVLWFTGLSGSGKSTVAGALEEALHQRGVSTYLLDGDNVRHGLCRDLGFSDADRQENIRRVGEVASLMADAGLIVLTAFISPHRAERQLVKERVGHDRFIEIYVNTPLAICEQRDPKGLYKKARAGELRNFTGIDAIYEAPDSPQVHLNGEQLVTNLVSQLLDLLRRRDIIRS
>CP036168.1|QBG30498.1|1004653_1005010_+|DUF3561-family-protein
MPGMVKVTGFNMRNSHNITFTRSDAFMVDDDATSAFPGAVVGFVSWLLALGIPFLLYGPNTLFFFLYTWPFFLALMPVSVIIGIALHLLVKGKILFSIMFTLLAVGALFGALFIWLLG
>CP036168.1|QBG30499.1|1005200_1005512_+|cell-division-protein-FtsB
MGKLTLLLLALLVWLQYSLWFGKNGIHDYSRVNDDVVAQQATNAKLKARNDQLFAEIDDLNGGQEAIEERARNELSMTKPGETFYRLVPDASKRAATAGQTHR
>CP036168.1|QBG30500.1|1005530_1006241_+|2-C-methyl-D-erythritol-4-phosphate-cytidylyltransferase
MAATLLDVCAVVPAAGFGRRMQTECPKQYLSIGNKTILEHSVHALLAHPRVTRVVIAISLGDHRFAQLPLANHPQITVVDGGNERADSVLAGLQAVAKAQWVLVHDAARPCLHQDDLARLLAISENSRVGGILASPVRDTMKRGEPGKNAIAHTVERADLWHALTPQFFPRELLYDCLTRALNEGATITDEASALEYCGFHPALVEGRADNIKVTRPEDLALAEFYLTRTIHQEKA
>CP036168.1|QBG30501.1|1006240_1006720_+|2-C-methyl-D-erythritol-2,4-cyclodiphosphate-synthase
MRIGHGFDVHAFGGEGPIIIGGVRIPYEKGLLAHSDGDVALHALTDALLGAAALGDIGKLFPDTDPAFKGADSRELLREAWRRIQAKGYTLGNVDVTIIAQAPKMLPHIPQMRVFIAEDLGCHMDEVNVKATTTEKLGFTGRGEGIACEAVALLMKAAK
>CP036168.1|QBG30502.1|1006716_1007766_+|tRNA-pseudouridine(13)-synthase-TruD
MTEFDNLTWLHGKPQGSGLLKANPEDFVVVEDLGFTPDGEGEHILLRILKNGCNTRFVADALAKFLKIHAREVSFAGQKDKHAVTEQWLCARVPGKEMPDFSAFQLEGCKVLEYARHKRKLRLGALKGNAFTLVLREISDRRDVETRLQAIRDGGVPNYFGAQRFGIGGSNLQGALRWAQSNAPVRDRNKRSFWLSAARSALFNQIVHQRLKKPDFNQVVDGDALQLAGRGSWFVATSEELPELQRRVDEKELMITASLPGSGEWGTQRAALAFEQDAIAQETVLQSLLLREKVEASRRAMLLYPQQLSWNWWDDVTVELRFWLPAGSFATSVVRELINTMGDYAHIAE
>CP036168.1|QBG30503.1|1007746_1008508_+|5'/3'-nucleotidase-SurE
MRILLSNDDGVHAPGIQTLAKALREFADVQVVAPDRNRSGASNSLTLESSLRTFTFDNGDIAVQMGTPTDCVYLGVNALMRPRPDIVVSGINAGPNLGDDVIYSGTVAAAMEGRHLGFPALAVSLNGYQHYDTAAAVTCALLRGLSREPLRTGRILNVNVPDLPLAQVKGIRVTRCGSRHPADKVIPQEDPRGNTLYWIGPPGDKYDAGPDTDFAAVDEGYVSVTPLHVDLTAHSAHDVVSDWLDSVGVGTQW

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Crispr_ID: CP036168_4

CRISPR_ID

CRISPR_location

CRISPR_type

Repeat_type

Spacer_info

Cas_protein_info

CRISPR-Cas_info

CP036168_4

1308979-1309088

Orphan

Consensus_repeat	Method
TGTCCCACCCTGTACCACTTTTTTTTAA	CRISPRCasFinder

1 spacers

The CRISPR arrays of CP036168_4

>merge|CP036168|4|1308979-1309088|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTTAATCAAATTCTCTAAGGTGGGACGCTGTAACCCTCGCCAGCTCTGCGTGTACCACTTGTCCCACCCTGTACCACCTTTTTTTAA

>CP036168|4|4|1308979-1309088|CRISPRCasFinder
TGTCCCACCCTGTACCACTTTTTTTTAA	TCAAATTCTCTAAGGTGGGACGCTGTAACCCTCGCCAGCTCTGCGTGTACCACT
TGTCCCACCCTGTACCACCTTTTTTTAA

Protein	Signature genes	Signature genes Name	Protein_function
CP036168.1\|QBG34081.1\|1306456_1307275_-\|DUF4435-domain-containing-protein	unknown	unknown	gnl\|CDD\|373095
CP036168.1\|QBG30771.1\|1304562_1304937_-\|PTS-sorbitol-transporter	unknown	unknown	gnl\|CDD\|226254
CP036168.1\|QBG30773.1\|1305567_1305852_-\|transcriptional-regulator	unknown	unknown	gnl\|CDD\|225957
CP036168.1\|QBG30769.1\|1302561_1303575_-\|Gfo/Idh/MocA-family-oxidoreductase	unknown	unknown	gnl\|CDD\|223745
CP036168.1\|QBG30780.1\|1315261_1315429_-\|integrase	unknown	unknown	gnl\|CDD\|170049
CP036168.1\|QBG30772.1\|1304933_1305455_-\|PTS-sorbitol-transporter-subunit-IIC	unknown	unknown	gnl\|CDD\|226253
CP036168.1\|QBG30774.1\|1305946_1306303_+\|XRE-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|238045
CP036168.1\|QBG34083.1\|1317107_1318271_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	unknown	unknown	gnl\|CDD\|130902
CP036168.1\|QBG30768.1\|1301064_1302267_-\|DUF3883-domain-containing-protein	unknown	unknown	gnl\|CDD\|379021
CP036168.1\|QBG30770.1\|1303585_1304566_-\|PTS-sorbitol-transporter-subunit-IIB	unknown	unknown	gnl\|CDD\|226255
CP036168.1\|QBG30767.1\|1300355_1300991_+\|3-hexulose-6-phosphate-synthase	unknown	unknown	gnl\|CDD\|132172
CP036168.1\|QBG30778.1\|1311876_1312704_+\|hypothetical-protein	unknown	unknown	unknown
CP036168.1\|QBG34082.1\|1314621_1315215_-\|hypothetical-protein	unknown	unknown	unknown
CP036168.1\|QBG30782.1\|1318278_1320459_-\|type-I-secretion-system-permease/ATPase	unknown	unknown	gnl\|CDD\|274550
CP036168.1\|QBG30776.1\|1309105_1311175_-\|DUF927-domain-containing-protein	unknown	unknown	gnl\|CDD\|227806
CP036168.1\|QBG30781.1\|1315442_1316507_-\|DUF4102-domain-containing-protein	unknown	unknown	gnl\|CDD\|170049
CP036168.1\|QBG30777.1\|1311210_1311426_-\|AlpA-family-transcriptional-regulator	unknown	unknown	gnl\|CDD\|225848
CP036168.1\|QBG30783.1\|1320455_1321865_-\|type-I-secretion-protein-TolC	unknown	unknown	gnl\|CDD\|273829
CP036168.1\|QBG30775.1\|1307319_1308603_-\|ATPase	unknown	unknown	gnl\|CDD\|226459
CP036168.1\|QBG30779.1\|1313038_1314232_-\|hypothetical-protein	unknown	unknown	gnl\|CDD\|376935

Protein	Function_ID	Function_description	E-value
CP036168.1\|QBG34081.1\|1306456_1307275_-\|DUF4435-domain-containing-protein	gnl\|CDD\|373095	pfam14491, DUF4435, Protein of unknown function (DUF4435). This presumed domain is functionally uncharacterized. This domain is found in bacteria, archaea and eukaryotes. Proteins in this family are typically between 285 and 362 amino acids in length. This domain is sometimes associated with AAA domains.	2.33424e-50
CP036168.1\|QBG30771.1\|1304562_1304937_-\|PTS-sorbitol-transporter	gnl\|CDD\|226254	COG3731, SrlB, Phosphotransferase system sorbitol-specific component IIA [Carbohydrate transport and metabolism].	5.89598e-59
CP036168.1\|QBG30773.1\|1305567_1305852_-\|transcriptional-regulator	gnl\|CDD\|225957	COG3423, Nlp, Predicted transcriptional regulator [Transcription].	5.31271e-38
CP036168.1\|QBG30769.1\|1302561_1303575_-\|Gfo/Idh/MocA-family-oxidoreductase	gnl\|CDD\|223745	COG0673, MviM, Predicted dehydrogenases and related proteins [General function prediction only].	9.77409e-67
CP036168.1\|QBG30780.1\|1315261_1315429_-\|integrase	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	2.20982e-13
CP036168.1\|QBG30772.1\|1304933_1305455_-\|PTS-sorbitol-transporter-subunit-IIC	gnl\|CDD\|226253	COG3730, SrlA, Phosphotransferase system sorbitol-specific component IIC [Carbohydrate transport and metabolism].	2.29561e-79
CP036168.1\|QBG30774.1\|1305946_1306303_+\|XRE-family-transcriptional-regulator	gnl\|CDD\|238045	cd00093, HTH_XRE, Helix-turn-helix XRE-family like proteins. Prokaryotic DNA binding proteins belonging to the xenobiotic response element family of transcriptional regulators.	2.55924e-09
CP036168.1\|QBG34083.1\|1317107_1318271_-\|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit	gnl\|CDD\|130902	TIGR01843, Hemolysin_secretion_protein_D_plasmid, type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins. [Protein fate, Protein and peptide secretion and trafficking].	3.18004e-97
CP036168.1\|QBG30768.1\|1301064_1302267_-\|DUF3883-domain-containing-protein	gnl\|CDD\|379021	pfam13020, DUF3883, Domain of unknown function (DUF3883). This is a domain is uncharacterized. It is found on restriction endonucleases.	6.01438e-16
CP036168.1\|QBG30770.1\|1303585_1304566_-\|PTS-sorbitol-transporter-subunit-IIB	gnl\|CDD\|226255	COG3732, SrlE, Phosphotransferase system sorbitol-specific component IIBC [Carbohydrate transport and metabolism].	1.31232e-179
CP036168.1\|QBG30767.1\|1300355_1300991_+\|3-hexulose-6-phosphate-synthase	gnl\|CDD\|132172	TIGR03128, RuMP_HxlA, 3-hexulose-6-phosphate synthase. Members of this protein family are 3-hexulose-6-phosphate synthase (HPS), or the HPS domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.	4.14833e-98
CP036168.1\|QBG30779.1\|1313038_1314232_-\|hypothetical-protein	gnl\|CDD\|376935	pfam02810, SEC-C, SEC-C motif. The SEC-C motif found in the C-terminus of the SecA protein, in the middle of some SWI2 ATPases and also solo in several proteins. The motif is predicted to chelate zinc with the CXC and C[HC] pairs that constitute the most conserved feature of the motif. It is predicted to be a potential nucleic acid binding domain.	3.20348e-07
CP036168.1\|QBG30782.1\|1318278_1320459_-\|type-I-secretion-system-permease/ATPase	gnl\|CDD\|274550	TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family. Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis].	0
CP036168.1\|QBG30776.1\|1309105_1311175_-\|DUF927-domain-containing-protein	gnl\|CDD\|227806	COG5519, COG5519, Superfamily II helicase and inactivated derivatives [DNA replication, recombination, and repair].	0
CP036168.1\|QBG30781.1\|1315442_1316507_-\|DUF4102-domain-containing-protein	gnl\|CDD\|170049	PRK09692, PRK09692, integrase; Provisional.	1.47537e-117
CP036168.1\|QBG30777.1\|1311210_1311426_-\|AlpA-family-transcriptional-regulator	gnl\|CDD\|225848	COG3311, AlpA, Predicted transcriptional regulator [Transcription].	2.37497e-21
CP036168.1\|QBG30783.1\|1320455_1321865_-\|type-I-secretion-protein-TolC	gnl\|CDD\|273829	TIGR01844, Proteases_secretion_protein_PrtF, type I secretion outer membrane protein, TolC family. Members of this model are outer membrane proteins from the TolC subfamily within the RND (Resistance-Nodulation-cell Division) efflux systems. These proteins, unlike the NodT subfamily, appear not to be lipoproteins. All are believed to participate in type I protein secretion, an ABC transporter system for protein secretion without cleavage of a signal sequence, although they may, like TolC, participate also in the efflux of smaller molecules as well. This family includes the well-documented examples TolC (E. coli), PrtF (Erwinia), and AprF (Pseudomonas aeruginosa). [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Porins].	5.87074e-128
CP036168.1\|QBG30775.1\|1307319_1308603_-\|ATPase	gnl\|CDD\|226459	COG3950, COG3950, Predicted ATP-binding protein involved in virulence [General function prediction only].	0

>CP036168.1|QBG30775.1|1307319_1308603_-|ATPase
MELRRISVNNLFGILNYDIDLGNSETIIITGPNGYGKTMLLKIIDNILNKNIDFFFDLRFEEIKFELDTILLCIEKQKNKNVAVTVVDYVNDKKRQEVFTLNKNKELDVDYFDEIYNKLLICDNIDSDPILKSYNHEEILNYYKIKKIKLHKEKHHKSDFLDKSIPNAELTFIKAQRIENIKNEKSAIESQANFLLELIKRAAEESAQISQRLDSTFPARLFDSINENISSTSINDRLIGIQRKRELFMKFGIIKSEDTFIPRKFSNATLGKEYSTVLNLYISDALEKLSPYEELFEKINLFVNLLNEKMLAFKEIKISNEHGFYFQSDNGERISLSNLSSGEQNQIVIYFDLIFKAKQNSVILIDEPEISLHVAWQKEFLDSIARIQKLNEFSKIIIATHSPQIVNNNWDITYDLFENNNKNMEGQ
>CP036168.1|QBG34081.1|1306456_1307275_-|DUF4435-domain-containing-protein
MLLLFRSPKYSRKIFFTLEGESDIRFLNTHFADERIHYDSPCSGKPEVINAVQLLRSHGKQNVYGLCDADFDILEGNSYENIHFTDCHDLEMMLIEGGSFDKFISEFLKTSILRIHTLEDIRNNLKESIIDVTYKIGILKWLNFKNNLLLMFKGMKYDNFITFVDFSANIDIDNYIQHILDRSPRKPPHCDFNFLKKEYQLLYNKQADYKYVCNGHDFTYITMMAFHSEFSRDKNITQEKVESHLRIAYSATAFQRTNIYNELSGLIDSHNI
>CP036168.1|QBG30774.1|1305946_1306303_+|XRE-family-transcriptional-regulator
MPEDGCCPERDNSCMFRCRIAIVIGKRLKISRVRADLTQAELGALAGLDEESASARISSYEKEVHAPDFKLVCKLAAALDVPEAYFYAVDDELAELILQYHRFKKNNPGSTLILSGNI
>CP036168.1|QBG30773.1|1305567_1305852_-|transcriptional-regulator
MKKSTTKDWHPADIVAALHKRGTSLAKLSREAGLASSTLSNTLTRPWPKGEWLIAIALDMHPSEIWPGRYLNSSNKREPRKPLHPMTTTDNSGT
>CP036168.1|QBG30772.1|1304933_1305455_-|PTS-sorbitol-transporter-subunit-IIC
MFLVSLAEGFIHLFQAAGKIFLDMMTGLIPMLICLLLAINFLMKLVGTVRMEKVAALLGRSRILTYGVLPVLGWFFMSSPGALTLGKLLPEKSKPGYEDALGTTAHPLTSLFPHVVPSELFVWLGVAAGVKALGLPVTSLALRYIAAAMLIGLIRGIITEYLFLRLSRRGNAP
>CP036168.1|QBG30771.1|1304562_1304937_-|PTS-sorbitol-transporter
MMIYCARITAIGLFVADGLTDKMLITFDSNGPKDCLDYSLSLEPSFREESLMILPGDRLLLAGHDYLVTAVGKGVQQALFELGHLTLVFDGDLKPCHTGAIHLSGPVPKLHDLHGNLVIEEGRP
>CP036168.1|QBG30770.1|1303585_1304566_-|PTS-sorbitol-transporter-subunit-IIB
MNTVLIPPGPGGYGKGLWLPVASGKKVLSLTGREIHPVAIEIGALTESEVVNGFSDIPPDNDILCVVINCAGSLRCGLYPQKGIPTINVLPTWRAGPLAQFISEDNYVSGVTIEQLVLVDTAEAPDGEPEPVSVTAPRIITTPPPARGAEKLVRMVERTGTAVGHVIALLFAASREAVDVSLRNVIPFMAFVSLLIALVQETALGSLIAHALTPLANSLWGLVLLSLICGIPFLSPVLGPGAAISQVIGVMIGTQIGAGAISPAFALPALFAINVQVGCDFVPVGLSMQEAKPETIAKGVPAFLLSRQLTGPLAVIIGWLFSLGLF
>CP036168.1|QBG30769.1|1302561_1303575_-|Gfo/Idh/MocA-family-oxidoreductase
MNKIRAAVVGAGIYGKHHMNAYRHNPDTVLVAICDTDTERCDDLAMAYGIQGYTRLDRLLQQEAIDIVSVATPDPYHTESILTALRHGQHVLAEKPLATSVRECELIVEMAQQRDLLVGVDFHKRWDPAVMRIKAELENPETGCILRGHISMDDVITVPTQWLNWAGASSPVWFLGSHCFDLVRHLSGQEVVSVYAVGQKRLMVECGLDTFDSVQSLLTMADGSSWGVENSWVLPEGFPKDNDGRIDILCEATYIRSTSQHRGLEITTPALTLTPNSYFINYRNGVASGFGIDPINDFVRAVRHKAPYPVTAEDGLAVSRICEAVHRSLESGKPEDV
>CP036168.1|QBG30768.1|1301064_1302267_-|DUF3883-domain-containing-protein
MLEFHNVPLKTILRRAIMSLPTNFNDILRFFEKDYDTAKEDNALSARGQFLQLYPLNHLKKMTLDDYVIGKGTASFCACVEVKTRTWANMQGATALKFGIYYGKSKSDPTVRYRFTQKFGDDDSTNKEVFANVKDALLDLIQSGKELDFRAIDENPLSQMFKAKILSLYFPEHFINICSKDHLKEIAMEMGIKEQQFISKYQHLLFKKKLEHKITRNWSNPKYMSFLYAQFIRKDLSSAPAVIVKKPQKRNHPEVNFEEITDNRDLIGKKSEEYALNWEKNRLIGLGYSKLAEEIDDRRNRPTYGYDFLSFNAPGDERYIEVKSIGRDGKEGAFRFFLSGNELTVSNLSNHSKNYYFYLVQYGKDGEPCNLYVKHAQDLYTNSEMSPCAYVVRFDLEEPA
>CP036168.1|QBG30767.1|1300355_1300991_+|3-hexulose-6-phosphate-synthase
MKLQLALDELTLPEAMVFMDKVVDDVDIIEVGTPFLIREGVNAIKAIKEKYPHKEVLADAKIMDGGHFESQLLFDAGADYVTVLGVTDVLTIQSCIRAAKEAGKQVVVDMICVDDLPARVRLLEEAGADMLAVHTGTDQQAAGRKPIDDLITMLKVRRKARIAVAGGISSQTVKDYALLGPDVVIVGSAITHAADPAGEARKISQVLLQHH
>CP036168.1|QBG30776.1|1309105_1311175_-|DUF927-domain-containing-protein
MKRAPFLCKQSPDRTLEVVILAGSLAWETSRVWRKDPDREDDVPPMVLGPNELADLSNLTIIRPDTLYVRVLRTGDISEEDLLKIAVKLAHAGVQMARLMSPDGELLENWTGQLERLRQERPSDILPDHFRLDEEALWFDKLTERRDGESDVQPQRICSPLRVTAITCDSHDGSYGRLLEWHTTTGQLRRWAMPMAMLSGNGEELRRILLENGLTNISTRPALRSLLCEYISRSLPGRRVTCVEKTGWHNGVYVLPDEVIGPDGDNVILQGSHYLTGGFAQAGTLAEWQEQVAALCAGNSRLVFAVCCALAAPLLRLTGTGGGGFHLRGESTDGKTTVMKVAASVCGGTDYWHSWRATGNALEGIASRHNDALLPLDELREVDPREAGMIAYMLANGQGKGRARTDGEVRNRRHWTLLLFSTGELSLAEHTERAGERIYAGMDVRMVQIPSDTGQHGAFEQLHGFASGQQFADTLCDRVARFHGTAFRAWLAFLTHDQDASTTLARELLRRYQNALMPDNAGNQVQRIVARFALLAAAGEIATLHGITGWQKGTAYEAVQICLHAWLNERGHIANQEDEGVLAQIKRFITAHQYSRFASWDGPDRPLNMAGFRRVEKDPLTGEEHTLFFILPEGWREICRGFSPARAARLCQEAECLQPGSDGKYQSQVRLPEIGKTRVYRLTSRILSI
>CP036168.1|QBG30777.1|1311210_1311426_-|AlpA-family-transcriptional-regulator
MKIRADSNDAFPESGNVRMRQVVQFLAMSESSVYRLIKDTDFPRPVHLSSRLVVFDAAEIRQWQQRRTVIR
>CP036168.1|QBG30778.1|1311876_1312704_+|hypothetical-protein
MQGLTMDDISLSIARNMFHLQVYESDGVRFEDLFSKIMYYKSPDFQQVKPYGNIGDRKNDGFIKGQGVYYQVYAPEDASNNVLAAVNKIKDDFEGLRDYWHDICPIKKYYFVLNDKYKGSLPQLHKELIVLQSDFNLIDTGVIVAKDLERELFNLPDDMIRSVVGHLPDIDHEEYMFVSGFTCFISAWINFEKIARHKVFSAKQPNRPLFIGKVVNALVKNKIISRQDATFIKKITEVRNSLVHGVSMLVPKKNEIDMLIFITEKIKPAGVCRLD
>CP036168.1|QBG30779.1|1313038_1314232_-|hypothetical-protein
MVNYPYFSVNVLSGSINFVENDKVKLGRNDKCWCKSGLKYKKCHLDRDREMPVSKAEALKFSKSNSQRKACYAPASMHEDCDKRIVQAHTLSKSSSLKAIADSSNHVMGVVMNLPSLIKNNGRWVPEKIGINQASTFTGFCAVHDRILFSCLENEKFTGTDEQCFALMFRSLSKEIYAKEGGRRSSDFAKNADKGKLQAEQVYIQEFVSLHQSGLNAAITELNNLKTSLDRILLNRQFSEIESVVFTFSEPLPIAVSSILSPERDFDGTKIQDLNDLTVSAEQVCFNAFSSEGKGYVVFSWLGTSAIIRRFVRSLIKVQTDRIFNTLLYFFFTKAENTYSSPEWWDSLSDKQRENIGNMIMSGVDFFDNSTLRVDHSVDYNSAALAEIRYSNSEISS
>CP036168.1|QBG34082.1|1314621_1315215_-|hypothetical-protein
MPLLEARHLALLLLGLDASQPANALPEEHQENYRILHDAISRTIKATGMVSAPANKRMFYADEMFALAWRLIDDELTPSEVKDRSLKAVMKLSRNSRGRKWLKTLGDDALPDLTASTQPSLRGMHKRDKARENTARLCWLLVQLLVEETDGRYGTSDKPASDQILRKLKTLAKEQELPSDGLGRGTFYEVLKMEREK
>CP036168.1|QBG30780.1|1315261_1315429_-|integrase
MLAHQKEDEIEAAYNRSDYLEQRRPLMQWWGNYVDAARRQALLGAEEPLQIVEGE
>CP036168.1|QBG30781.1|1315442_1316507_-|DUF4102-domain-containing-protein
MPNQLKPLTNVEIAGAKPRSTDYELRDGEGLYLLVKTSGRKAWHFEYYHPVTKKRTKTSLGPYPVVTLAMARETRTKYRRLLYQGIDPRQHLAGIAEEKRIQNECTLEKVAEQWLKEKKRTSDLSEDHAKDVWRSLEMHVFPSLGNTPVTEIRPKMLKEHLTPLEEQGILETLRRVISRLNEIFRFAISEELIEFNPADNLVARFKKPKKQNMPALHPSELGRLMLALQNASIRKETRCLIEWELLTWVRPGEAVSARWCDIDMKKAEWRIPDTFMKMNRSHTVPLSKQALRVLQIMEPVSRHRPWVFPSIRKPLEHMHQQTANAALIRMGFGGELVAHGMRSRQDRRRRSFSP
>CP036168.1|QBG34083.1|1317107_1318271_-|HlyD-family-type-I-secretion-periplasmic-adaptor-subunit
MDDPDIQRERAFSGAGRIVLICSLLFLILGIWAWFGRLDEVSTGNGKVIPSSREQVLQSLDGGILAQLTVREGDRVQANQIVARLDPTRLASNVGESAAKYRASLASSARLTAEVNDLPLAFPAELNGWPDLIAAETRLYKSRRAQLADTEAELRDALASVNKELAITQRLEKSGAASHVEVLRLQRQKSDLGLKITDLRSQYYVQAREALSKANAEVDMLSAILKGREDSVTRLTVRSPVRGIVKNIQVTTIGGVIPPNGEMMEIVPVDDRLLIETRLSPRDIAFIHPGQRALVKITAYDYAIYGGLDGVVETISPDTIQDKVKPEIFYYRVFIRTHQDYLQNKSGRRFSIVPGMIATVDIKTGEKTIVDYLIKPFNRAKEALRER
>CP036168.1|QBG30782.1|1318278_1320459_-|type-I-secretion-system-permease/ATPase
MTRAAPDVEEVLSERALSQWAQAISYVAGHYRVACSPGSIQANAPWLRGKSRTTALTQLARQAGLSFHAPDIDKTAFSQWRLPLVVELRDGQLLVIEHVNGEEAVDVFVIEEEGQRNRLTLSELLPEILYVAALRPLSALKDSRVDRYISRFKPDWMRELVLQDIRPYLPVMVAAFLINVLSLAGIVFSMQVYDRVIPAQSYPTLYVLSFGVLVAVLFGFLLREARTHIMDVLGKRADMRISDRVFGHALRLRNSAIPRSTGSFISQLRELEQIREMITSSTLATIVDLPFFFLFMIVLAIIAPPLAWIAPVAALLMILPGVALQKKLAVLANQAAHEATLRNAVLVESVQGLEDIKLMQAENRFLQQWNSYIRITGESGLRTRKLTQGLISWGMSVQSLVYAAVIMFGAPMVIEGSMTTGAVVAASMLGSRMIAPMANLCGVLARWQQVKAAKMGLDNIMQLPTETQHDDSLIHRDILHGHYLFENAQFRYHNDDQRIPLRLVRLEIMPGERIAILGRNGAGKSTLLQAMAGGLEMIQGDARLDNLSLSHIDMADLRRNIGFLSQNARLFFGTLRENLTLGAPHANDEQIFDALEVSGGAVFVRRLAKGLDHPIMEGGNGLSGGQRQSLLLARMLLRSPNIVLLDEPSASLDEHTEREFIQRLHQWLGNRTLVVATHRVPILELVERVVVLKEGQLVMDAPKAQALNADRMQSHRREWKNENQSA
>CP036168.1|QBG30783.1|1320455_1321865_-|type-I-secretion-protein-TolC
MGRVAPVAIVLAFALFHHQPRGAEAPPMITSEGLATDQMLPSLDGSAAELPLSAAAPGNLTLNDAVNRAVNWHPSIREAIGKLLAQNEQIEVAKSKYYPQVSAGVNNGYSNTYTDHGYSPSLVLSVSQMLYDFGKVASQVRAETAGAAQQQANVLLSIDTVAHETANAIVQTQSWQQMVEAAEEQLVALDSIGKLIRQRSDEGATSLSDVVQTEARIESARSQLAQYQANLDSAKASLMSWLGWNSLNGINNDFPAKLARSCETATPDDRLVPAVLAAWAQANVARANLDYASAQMTPTISLEPSVQHYLNDKYPSHEVLDKTQYSTWVKVEMPLYQGGGLTARRNAASHAVDAAQSTIQRTRLDVRQKLMEARSQAMSLASALQILRRQQQLSERTRELYQQQYLDLGSRPLLDVLNAEQEVYQARFAELQTESQLHQLQLNCLYNTGALRQAFALNHRSIQSVEIQP

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Self-targeting detection

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_ID	Protospacer_location	Mismatch	Identity

MGE targeting detection<

CRISPR_ID	Spacer_Info	Spacer_region	Spacer_length	Hit_phage_ID	Hit_phage_def	Protospacer_location	Mismatch	Identity
CP036168_2	2.28\|983365\|32\|CP036168\|PILER-CR	983365-983396	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
CP036168_2	2.28\|983365\|32\|CP036168\|PILER-CR	983365-983396	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
CP036168_2	2.38\|983362\|32\|CP036168\|CRISPRCasFinder,CRT	983362-983393	32	NZ_CP034699	Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence	177960-177991	1	0.969
CP036168_2	2.38\|983362\|32\|CP036168\|CRISPRCasFinder,CRT	983362-983393	32	NZ_CP034710	Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence	67131-67162	1	0.969
CP036168_2	2.32\|982995\|32\|CP036168\|CRISPRCasFinder,CRT	982995-983026	32	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130783-130814	2	0.938
CP036168_2	2.22\|982995\|35\|CP036168\|PILER-CR	982995-983029	35	NZ_CP030204	Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence	130780-130814	4	0.886
CP036168_2	2.11\|982324\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982324-982355	32	NC_011366	Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence	208454-208485	7	0.781
CP036168_2	2.11\|982324\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982324-982355	32	NC_017958	Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence	449563-449594	7	0.781
CP036168_2	2.11\|982324\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982324-982355	32	NZ_CP035001	Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence	167100-167131	7	0.781
CP036168_2	2.5\|981958\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	981958-981989	32	NC_028940	Pectobacterium bacteriophage PM2, complete genome	79087-79118	8	0.75
CP036168_2	2.6\|982019\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982019-982050	32	NZ_CP014942	Rhodococcus sp. BH4 plasmid, complete sequence	462005-462036	8	0.75
CP036168_2	2.16\|982629\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982629-982660	32	CP001770	Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence	145771-145802	8	0.75
CP036168_2	2.17\|982690\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982690-982721	32	LQ277707	Sequence 2 from Patent WO2016071503	12422-12453	8	0.75
CP036168_2	2.17\|982690\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982690-982721	32	LZ998055	JP 2017534684-A/2: Phage Therapy	12422-12453	8	0.75
CP036168_2	2.20\|982873\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982873-982904	32	NZ_CP028348	Novosphingobium sp. THN1 plasmid pTHN, complete sequence	1098771-1098802	8	0.75
CP036168_2	2.20\|982873\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982873-982904	32	NZ_CP014128	Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence	160189-160220	8	0.75
CP036168_2	2.20\|982873\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982873-982904	32	NC_014561	Pantoea vagans C9-1 plasmid pPag1, complete sequence	156443-156474	8	0.75
CP036168_2	2.20\|982873\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982873-982904	32	NC_010553	Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence	137983-138014	8	0.75
CP036168_2	2.25\|983182\|32\|CP036168\|PILER-CR	983182-983213	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
CP036168_2	2.25\|983182\|32\|CP036168\|PILER-CR	983182-983213	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
CP036168_2	2.35\|983179\|32\|CP036168\|CRISPRCasFinder,CRT	983179-983210	32	CP024685	Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence	135469-135500	8	0.75
CP036168_2	2.35\|983179\|32\|CP036168\|CRISPRCasFinder,CRT	983179-983210	32	NZ_CP031801	Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence	11654-11685	8	0.75
CP036168_3	3.2\|999886\|34\|CP036168\|PILER-CR	999886-999919	34	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8895	8	0.765
CP036168_3	3.2\|999886\|34\|CP036168\|PILER-CR	999886-999919	34	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151598-151631	8	0.765
CP036168_3	3.11\|999888\|32\|CP036168\|CRISPRCasFinder,CRT	999888-999919	32	NZ_CP016489	Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence	8862-8893	8	0.75
CP036168_3	3.11\|999888\|32\|CP036168\|CRISPRCasFinder,CRT	999888-999919	32	NZ_CP016476	Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence	151600-151631	8	0.75
CP036168_3	3.17\|1000254\|32\|CP036168\|CRISPRCasFinder,CRT	1000254-1000285	32	MN855803	Bacteriophage sp. isolate 108, partial genome	10057-10088	8	0.75
CP036168_2	2.7\|982080\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982080-982111	32	NZ_CP021372	Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence	353298-353329	9	0.719
CP036168_2	2.7\|982080\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982080-982111	32	AM749121	Streptococcus phage M102 complete genome	7893-7924	9	0.719
CP036168_2	2.7\|982080\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982080-982111	32	NC_012884	Streptococcus phage M102, complete genome	7893-7924	9	0.719
CP036168_2	2.10\|982263\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982263-982294	32	MN693046	Marine virus AFVG_25M413, complete genome	4323-4354	9	0.719
CP036168_2	2.10\|982263\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982263-982294	32	MN693008	Marine virus AFVG_117M9, complete genome	4316-4347	9	0.719
CP036168_2	2.11\|982324\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982324-982355	32	DQ674738	Aeromonas phage phiO18P, complete genome	15707-15738	9	0.719
CP036168_2	2.11\|982324\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982324-982355	32	NZ_CP031166	Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence	380725-380756	9	0.719
CP036168_2	2.11\|982324\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982324-982355	32	NZ_CP022367	Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence	153785-153816	9	0.719
CP036168_2	2.14\|982507\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982507-982538	32	MN694645	Marine virus AFVG_250M761, complete genome	31050-31081	9	0.719
CP036168_2	2.15\|982568\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982568-982599	32	MN062720	Microbacterium phage FuzzBuster, complete genome	19374-19405	9	0.719
CP036168_2	2.20\|982873\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982873-982904	32	NZ_CP045722	Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence	332-363	9	0.719
CP036168_2	2.20\|982873\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982873-982904	32	NZ_CP022519	Pantoea vagans strain FBS135 plasmid pPant3, complete sequence	62976-63007	9	0.719
CP036168_2	2.20\|982873\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982873-982904	32	NZ_CP028351	Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence	144976-145007	9	0.719
CP036168_2	2.23\|983059\|32\|CP036168\|PILER-CR	983059-983090	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
CP036168_2	2.33\|983056\|32\|CP036168\|CRISPRCasFinder,CRT	983056-983087	32	NZ_CP051686	Duganella sp. GN2-R2 plasmid unnamed1, complete sequence	45237-45268	9	0.719
CP036168_2	2.5\|981958\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	981958-981989	32	NZ_CP042995	Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence	68697-68728	10	0.688
CP036168_2	2.5\|981958\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	981958-981989	32	NZ_CP026129	Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence	43950-43981	10	0.688
CP036168_2	2.5\|981958\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	981958-981989	32	NZ_CP038501	Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence	49131-49162	10	0.688
CP036168_2	2.5\|981958\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	981958-981989	32	NZ_CP046044	Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence	66631-66662	10	0.688
CP036168_2	2.5\|981958\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	981958-981989	32	NZ_CP048015	Acinetobacter towneri strain 205 plasmid pAT205, complete sequence	147167-147198	10	0.688
CP036168_2	2.8\|982141\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982141-982172	32	NZ_CP030264	Ensifer adhaerens strain Corn53 plasmid AB, complete sequence	1134787-1134818	10	0.688
CP036168_2	2.15\|982568\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982568-982599	32	NZ_CP019257	Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence	20006-20037	10	0.688
CP036168_2	2.15\|982568\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982568-982599	32	NZ_CP019274	Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence	9024-9055	10	0.688
CP036168_2	2.15\|982568\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982568-982599	32	NZ_CP019275	Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence	27130-27161	10	0.688
CP036168_2	2.15\|982568\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982568-982599	32	NZ_CP019279	Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence	19363-19394	10	0.688
CP036168_2	2.15\|982568\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982568-982599	32	NZ_CP019246	Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence	23427-23458	10	0.688
CP036168_2	2.15\|982568\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982568-982599	32	NC_049342	Escherichia phage 500465-1, complete genome	24342-24373	10	0.688
CP036168_2	2.15\|982568\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982568-982599	32	KY271398	Klebsiella phage 4 LV-2017, complete genome	28240-28271	10	0.688
CP036168_2	2.15\|982568\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982568-982599	32	CP025900	Escherichia phage sp., complete genome	24342-24373	10	0.688
CP036168_2	2.29\|983426\|32\|CP036168\|PILER-CR	983426-983457	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
CP036168_2	2.39\|983423\|32\|CP036168\|CRISPRCasFinder,CRT	983423-983454	32	NZ_CP044072	Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence	99817-99848	10	0.688
CP036168_2	2.42\|983606\|32\|CP036168\|CRISPRCasFinder,CRT	983606-983637	32	NZ_CP054615	Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence	146919-146950	10	0.688
CP036168_3	3.8\|1000252\|34\|CP036168\|PILER-CR	1000252-1000285	34	MN855803	Bacteriophage sp. isolate 108, partial genome	10055-10088	10	0.706
CP036168_3	3.18\|1000315\|32\|CP036168\|CRISPRCasFinder,CRT	1000315-1000346	32	NC_016113	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence	1151729-1151760	10	0.688
CP036168_3	3.18\|1000315\|32\|CP036168\|CRISPRCasFinder,CRT	1000315-1000346	32	NC_017585	Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence	661429-661460	10	0.688
CP036168_2	2.11\|982324\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982324-982355	32	NZ_CP054036	Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence	234768-234799	11	0.656
CP036168_2	2.11\|982324\|32\|CP036168\|PILER-CR,CRISPRCasFinder,CRT	982324-982355	32	NZ_CP022568	Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence	299431-299462	11	0.656

1. spacer 2.28|983365|32|CP036168|PILER-CR matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

2. spacer 2.28|983365|32|CP036168|PILER-CR matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

3. spacer 2.38|983362|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP034699 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE40 plasmid pRSE40, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

4. spacer 2.38|983362|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP034710 (Salmonella enterica subsp. enterica serovar Karamoja strain RSE21 plasmid pRSE21, complete sequence) position: , mismatch: 1, identity: 0.969

ggatatgtgaagttcaggtagcccattacgca	CRISPR spacer
ggatatgtgaagttcaggtagcccactacgca	Protospacer
*************************.******

5. spacer 2.32|982995|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 2, identity: 0.938

aaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
aaacgaaagaggccatgcgattgtttatcggt	Protospacer
*************.*****.************

6. spacer 2.22|982995|35|CP036168|PILER-CR matches to NZ_CP030204 (Salmonella enterica strain SA20083530 plasmid pSA20083530.1, complete sequence) position: , mismatch: 4, identity: 0.886

tcgaaacgaaagaggctatgcggttgtttatcggt	CRISPR spacer
atgaaacgaaagaggccatgcgattgtttatcggt	Protospacer
 .**************.*****.************

7. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_011366 (Rhizobium leguminosarum bv. trifolii WSM2304 plasmid pRLG202, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

8. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_017958 (Tistrella mobilis KA081020-065 plasmid pTM3, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcaccgccgatcctttcaccgccgcc	Protospacer
********* ********* ****. *.  **

9. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP035001 (Rhizobium acidisoli strain FH23 plasmid pRapFH23c, complete sequence) position: , mismatch: 7, identity: 0.781

ccggcatcagcgccgatccgttcatagtgccc---	CRISPR spacer
tcggcaccagcgccgatccggtca---tgctcgaa	Protospacer
.*****.************* ***   ***.*

10. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_028940 (Pectobacterium bacteriophage PM2, complete genome) position: , mismatch: 8, identity: 0.75

gctcattaaataactatataacccccggactc	CRISPR spacer
tatcattaaataactatataacacacgagagc	Protospacer
  ******************** * **..  *

11. spacer 2.6|982019|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014942 (Rhodococcus sp. BH4 plasmid, complete sequence) position: , mismatch: 8, identity: 0.75

ttccagaaccgtttgacttactgtggccatta	CRISPR spacer
ctgccgaaccgtgtgccttactgtggccaccg	Protospacer
.* * ******* ** *************...

12. spacer 2.16|982629|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to CP001770 (Spirosoma linguale DSM 74 plasmid pSLIN01, complete sequence) position: , mismatch: 8, identity: 0.75

cggaggatggaatatttccgaggctggcgatt	CRISPR spacer
tgggagatggaatacttccggggctggcaacc	Protospacer
.**..*********.*****.*******.*..

13. spacer 2.17|982690|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to LQ277707 (Sequence 2 from Patent WO2016071503) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

14. spacer 2.17|982690|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to LZ998055 (JP 2017534684-A/2: Phage Therapy) position: , mismatch: 8, identity: 0.75

atgccggaacgctgatggcgtttgacatgagc----	CRISPR spacer
ttgccggaacgctattggcgtttg----cagccttt	Protospacer
 ************. *********     ***

15. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028348 (Novosphingobium sp. THN1 plasmid pTHN, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac-	CRISPR spacer
atacgctggtctataccggcaa-ggatccgctg	Protospacer
  ******************** *.*. ** .

16. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP014128 (Pantoea vagans strain FDAARGOS_160 plasmid unnamed3, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

17. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_014561 (Pantoea vagans C9-1 plasmid pPag1, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattc	Protospacer
****.********.********** * .   *

18. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_010553 (Burkholderia ambifaria MC40-6 plasmid pBMC401, complete sequence) position: , mismatch: 8, identity: 0.75

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
ggacgctgttcaataccggcaacgtccggatc	Protospacer
 ******* ** ************  ** . *

19. spacer 2.25|983182|32|CP036168|PILER-CR matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

20. spacer 2.25|983182|32|CP036168|PILER-CR matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

21. spacer 2.35|983179|32|CP036168|CRISPRCasFinder,CRT matches to CP024685 (Bacillus wiedmannii bv. thuringiensis strain FCC41 plasmid pFCC41-1-490K, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
attcactatcagacattttattcagttctgcc	Protospacer
  ***** ** *****************  .

22. spacer 2.35|983179|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP031801 (Klebsiella pneumoniae strain MSB1_8A-sc-2280397 plasmid unnamed1, complete sequence) position: , mismatch: 8, identity: 0.75

cgtcactttctgacattttattcagttcgtta	CRISPR spacer
cgcgcgtgtctgacattgtattcagttcattt	Protospacer
**.   * ********* **********.**

23. spacer 3.2|999886|34|CP036168|PILER-CR matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.765

cgttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
cgctcttgaatatgattgcgggtttagatttacc	Protospacer
**.******************** ** .*  *.

24. spacer 3.2|999886|34|CP036168|PILER-CR matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.765

cgttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
cgctcttgaatatgattgcgggtttagatttacc	Protospacer
**.******************** ** .*  *.

25. spacer 3.11|999888|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP016489 (Synechococcus sp. PCC 8807 plasmid unnamed6, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

26. spacer 3.11|999888|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP016476 (Synechococcus sp. PCC 7003 plasmid unnamed2, complete sequence) position: , mismatch: 8, identity: 0.75

ttcttgaatatgattgcgggtatatgtggata	CRISPR spacer
ctcttgaatatgattgcgggtttagatttacc	Protospacer
.******************** ** .*  *.

27. spacer 3.17|1000254|32|CP036168|CRISPRCasFinder,CRT matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 8, identity: 0.75

ggttaaccaggggtttttccccactatttcgc	CRISPR spacer
aggtaacgaggggtttttccccaatattgaaa	Protospacer
.* **** *************** ****  .

28. spacer 2.7|982080|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP021372 (Rhizobium sp. ACO-34A plasmid pRACO34Ad, complete sequence) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
ggtgcgggtgaggaactcctcgtccactgaac	Protospacer
*  **** **** **************   .

29. spacer 2.7|982080|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to AM749121 (Streptococcus phage M102 complete genome) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
aaggcggtggagtaactcctggtccagcccaa	Protospacer
. .***** *********** *****  .*.*

30. spacer 2.7|982080|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_012884 (Streptococcus phage M102, complete genome) position: , mismatch: 9, identity: 0.719

gcagcggttgagtaactcctcgtccacgtcga	CRISPR spacer
aaggcggtggagtaactcctggtccagcccaa	Protospacer
. .***** *********** *****  .*.*

31. spacer 2.10|982263|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to MN693046 (Marine virus AFVG_25M413, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

32. spacer 2.10|982263|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to MN693008 (Marine virus AFVG_117M9, complete genome) position: , mismatch: 9, identity: 0.719

gcgaggtcaataaaaaatggtgtggctttacc	CRISPR spacer
ttagggtcaacaaaaaatggtgtggtttcaga	Protospacer
 ...******.**************.**.*

33. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to DQ674738 (Aeromonas phage phiO18P, complete genome) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatcagcgccgagcagttcagcaaactg	Protospacer
**************** * *****  . .*.

34. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP031166 (Euzebya sp. DY32-46 plasmid pEDY32-46I, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
gcggcatcagcgccgaccggttcaccgtcagg	Protospacer
 ***************.* *****. **

35. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022367 (Azospirillum sp. TSH58 plasmid TSH58_p02, complete sequence) position: , mismatch: 9, identity: 0.719

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ccggcatgagcgccgatcagttcgacgccctg	Protospacer
******* ********** ****.  *. *.

36. spacer 2.14|982507|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to MN694645 (Marine virus AFVG_250M761, complete genome) position: , mismatch: 9, identity: 0.719

aacaggaacaggaaaaaaaagatttgtccggt	CRISPR spacer
tacagtaacaggaaaaaaaggattaatgatgc	Protospacer
 **** *************.**** .*   *.

37. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to MN062720 (Microbacterium phage FuzzBuster, complete genome) position: , mismatch: 9, identity: 0.719

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaacggtcagcctgtccaggagga	Protospacer
****** *********** ****..**

38. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP045722 (Pantoea eucalypti strain LMG 24197 plasmid unnamed2, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

39. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022519 (Pantoea vagans strain FBS135 plasmid pPant3, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacgctgatctataccggcaacgtcaagttt	Protospacer
********.***************   .   .

40. spacer 2.20|982873|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP028351 (Pantoea vagans strain PV989 plasmid pPV989-167, complete sequence) position: , mismatch: 9, identity: 0.719

tgacgctggtctataccggcaacgaacgcgac	CRISPR spacer
tgacactggtctacaccggcaacgtaaaattt	Protospacer
****.********.********** * .   .

41. spacer 2.23|983059|32|CP036168|PILER-CR matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

42. spacer 2.33|983056|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP051686 (Duganella sp. GN2-R2 plasmid unnamed1, complete sequence) position: , mismatch: 9, identity: 0.719

ccccgatagcgacgcttctgtagtcactggca	CRISPR spacer
gtccgatagcgacacttcggtagtcaggcgtg	Protospacer
 .***********.**** *******   *..

43. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP042995 (Acinetobacter nosocomialis strain J1A plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gctcattaaataactatataacccccggactc	CRISPR spacer
cagcattaattaactgtataacccccaaaaaa	Protospacer
   ****** *****.**********..*

44. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP026129 (Acinetobacter baumannii strain ABNIH28 plasmid pABA-2f10, complete sequence) position: , mismatch: 10, identity: 0.688

gctcattaaataactatataacccccggactc	CRISPR spacer
cagcattaattaactgtataacccccaaaaaa	Protospacer
   ****** *****.**********..*

45. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP038501 (Acinetobacter baumannii strain CIAT758 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

gctcattaaataactatataacccccggactc	CRISPR spacer
cagcattaattaactgtataacccccaaaaaa	Protospacer
   ****** *****.**********..*

46. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP046044 (Acinetobacter towneri strain 19110F47 plasmid p19110F47-2, complete sequence) position: , mismatch: 10, identity: 0.688

gctcattaaataactatataacccccggactc	CRISPR spacer
cagcattaattaactgtataacccccaaaaaa	Protospacer
   ****** *****.**********..*

47. spacer 2.5|981958|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP048015 (Acinetobacter towneri strain 205 plasmid pAT205, complete sequence) position: , mismatch: 10, identity: 0.688

gctcattaaataactatataacccccggactc	CRISPR spacer
cagcattaattaactgtataacccccaaaaaa	Protospacer
   ****** *****.**********..*

48. spacer 2.8|982141|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP030264 (Ensifer adhaerens strain Corn53 plasmid AB, complete sequence) position: , mismatch: 10, identity: 0.688

ctccagcgctcgaatttatttgaggccaccac	CRISPR spacer
gaacaccgcgcgaatttatttgaggcaagttt	Protospacer
   ** *** **************** * . .

49. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019257 (Escherichia coli strain 13TMH22 plasmid p13TMH22-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

50. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019274 (Escherichia coli strain 13P477T plasmid p13P477T-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

51. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019275 (Escherichia coli strain 13P477T plasmid p13P477T-2, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

52. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019279 (Escherichia coli strain 13P477T plasmid p13P477T-6, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

53. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP019246 (Escherichia coli strain Combat13F7 plasmid pCombat13F7-1, complete sequence) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

54. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NC_049342 (Escherichia phage 500465-1, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

55. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to KY271398 (Klebsiella phage 4 LV-2017, complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

56. spacer 2.15|982568|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to CP025900 (Escherichia phage sp., complete genome) position: , mismatch: 10, identity: 0.688

cagatcctcaacggtcaggctgtttagttcct	CRISPR spacer
cagatcgtcaaccgtcaggctgtcggtaaacc	Protospacer
****** ***** **********. .    *.

57. spacer 2.29|983426|32|CP036168|PILER-CR matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

58. spacer 2.39|983423|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP044072 (Pseudomonas oryzihabitans strain FDAARGOS_657 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

ttgatcgagagtgcgaagaggcagaacgggca	CRISPR spacer
gaaggtggcagtgccaagagacagaacgggca	Protospacer
  .. .*. ***** *****.***********

59. spacer 2.42|983606|32|CP036168|CRISPRCasFinder,CRT matches to NZ_CP054615 (Azospirillum oryzae strain KACC 14407 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.688

cgttcatcggcagcgtcacgcaatatgaagat	CRISPR spacer
acatcatcggcatcgtcacgccatatccggca	Protospacer
   ********* ******** ****  .*

60. spacer 3.8|1000252|34|CP036168|PILER-CR matches to MN855803 (Bacteriophage sp. isolate 108, partial genome) position: , mismatch: 10, identity: 0.706

cgggttaaccaggggtttttccccactatttcgc	CRISPR spacer
tcaggtaacgaggggtttttccccaatattgaaa	Protospacer
. .* **** *************** ****  .

61. spacer 3.18|1000315|32|CP036168|CRISPRCasFinder,CRT matches to NC_016113 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCAT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

62. spacer 3.18|1000315|32|CP036168|CRISPRCasFinder,CRT matches to NC_017585 (Streptomyces cattleya NRRL 8057 = DSM 46488 plasmid pSCATT, complete sequence) position: , mismatch: 10, identity: 0.688

aggggcgttccgcagtcgacaagggctgaaaa	CRISPR spacer
ccgggcggtccgcagtcgacgagggtgaggga	Protospacer
  ***** ************.****. ....*

63. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP054036 (Rhizobium sp. JKLM13E plasmid pPR13E05, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

64. spacer 2.11|982324|32|CP036168|PILER-CR,CRISPRCasFinder,CRT matches to NZ_CP022568 (Rhizobium leguminosarum bv. viciae strain BIHB 1148 plasmid pSK04, complete sequence) position: , mismatch: 11, identity: 0.656

ccggcatcagcgccgatccgttcatagtgccc	CRISPR spacer
ttccgatcagcgccgatccgctcctagtctat	Protospacer
..   ***************.** **** . .

Prophage detection

Region

Region Position

Protein_number

Hit_taxonomy

Key_proteins

Att_site

Prophage annotation

DBSCAN-SWA_1

1161486 : 1181285

Escherichia_phage(50.0%)

transposase

The bacterium proteins that are colored denote the protein is present at specific phage-related keywords (such as 'capsid', 'head', 'integrase', 'plate', 'tail', 'fiber', 'coat', 'transposase', 'portal', 'terminase', 'protease' or 'lysin' and 'tRNA')

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBG30653.1\|1161486_1162191_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QBG30654.1\|1162167_1162365_+	hypothetical protein	NA	NA	NA	NA
QBG30655.1\|1162510_1163374_+	SDR family oxidoreductase	NA	NA	NA	NA
QBG30656.1\|1163411_1163657_+	hypothetical protein	NA	NA	NA	NA
QBG30657.1\|1164125_1164917_+	sulfonamide-resistant dihydropteroate synthase Sul3	NA	NA	NA	NA
QBG30658.1\|1165054_1165759_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
QBG34067.1\|1165704_1165896_-	hypothetical protein	NA	NA	NA	NA
QBG30659.1\|1166083_1166275_+	Rop family plasmid primer RNA-binding protein	NA	NA	NA	NA
QBG30660.1\|1166874_1169760_-\|transposase	Tn3 family transposase	A0A1B0V7H9	Salmonella_phage	8.4e-191	39.9
QBG30661.1\|1169885_1170509_+	recombinase family protein	E5FFF9	Burkholderia_phage	2.3e-37	48.6
QBG30662.1\|1170802_1171726_-\|transposase	IS5-like element IS903B family transposase	Q9MCT5	Escherichia_phage	2.2e-177	100.0
QBG30663.1\|1172841_1173645_+	aminoglycoside O-phosphotransferase APH(3'')-Ib	Q75ZG1	Hepacivirus	4.9e-24	34.3
QBG30664.1\|1173644_1174481_+	aminoglycoside O-phosphotransferase APH(6)-Id	NA	NA	NA	NA
QBG30665.1\|1174522_1174813_-	hypothetical protein	NA	NA	NA	NA
QBG30666.1\|1174914_1175121_-	hypothetical protein	NA	NA	NA	NA
QBG30667.1\|1175181_1176507_-	type II toxin-antitoxin system HipA family toxin	NA	NA	NA	NA
QBG34068.1\|1176511_1176805_-	XRE family transcriptional regulator	NA	NA	NA	NA
QBG30668.1\|1177118_1177430_-	hypothetical protein	NA	NA	NA	NA
QBG30669.1\|1177408_1177801_-	hypothetical protein	NA	NA	NA	NA
QBG30670.1\|1178143_1178515_+	hypothetical protein	NA	NA	NA	NA
QBG30671.1\|1178606_1178798_+	hypothetical protein	E5FFJ6	Burkholderia_phage	1.4e-09	58.5
QBG30672.1\|1179097_1179802_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QBG30673.1\|1180292_1181285_+\|transposase	transposase	NA	NA	NA	NA

DBSCAN-SWA_2

1185066 : 1211063

Escherichia_phage(33.33%)

transposase,integrase

attL 1179035:1179094|attR 1204973:1205792

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1179035:1179094	attL	NA	NA	NA	NA
QBG30681.1\|1185066_1186080_+\|integrase	class 1 integron integrase IntI1	A0A1P8DJJ6	Virus_Rctr41k	1.0e-71	45.5
QBG34069.1\|1186282_1186633_+	DUF3330 domain-containing protein	NA	NA	NA	NA
QBG30682.1\|1186758_1187319_+	recombinase family protein	A0A1B0V7I5	Salmonella_phage	4.0e-49	86.2
QBG30683.1\|1187321_1190288_+\|transposase	Tn3-like element TnAs3 family transposase	A0A1B0V7H9	Salmonella_phage	0.0e+00	73.6
QBG34070.1\|1190296_1190698_+	hypothetical protein	NA	NA	NA	NA
QBG30684.1\|1190782_1191487_-\|transposase	IS6-like element IS1006 family transposase	A0A077SL39	Escherichia_phage	1.9e-120	85.8
QBG30685.1\|1192411_1193296_+	DUF3363 domain-containing protein	NA	NA	NA	NA
QBG30686.1\|1193512_1194727_+	chloramphenicol/florfenicol efflux MFS transporter FloR	S4TR35	Salmonella_phage	1.2e-18	28.7
QBG30687.1\|1194754_1195060_+	LysR family transcriptional regulator	NA	NA	NA	NA
QBG30688.1\|1195171_1196665_+\|transposase	IS91-like element ISVsa3 family transposase	NA	NA	NA	NA
QBG30689.1\|1196695_1196947_+	hypothetical protein	NA	NA	NA	NA
QBG30690.1\|1196840_1197143_-	phosphoglucosamine mutase	NA	NA	NA	NA
QBG30691.1\|1197229_1198045_-	sulfonamide-resistant dihydropteroate synthase Sul2	NA	NA	NA	NA
QBG30692.1\|1198134_1199224_+\|transposase	IS4 family transposase	NA	NA	NA	NA
QBG30693.1\|1199421_1199907_-	phenol hydroxylase	NA	NA	NA	NA
QBG30694.1\|1201717_1202470_+\|transposase	IS6 family transposase	A0A077SL39	Escherichia_phage	2.4e-41	44.7
QBG30695.1\|1202891_1203917_-	aminoglycoside O-phosphotransferase APH(4)-Ia	NA	NA	NA	NA
QBG30696.1\|1203903_1204125_-	hypothetical protein	NA	NA	NA	NA
QBG34071.1\|1204145_1204922_-	aminoglycoside N-acetyltransferase AAC(3)-IV	NA	NA	NA	NA
QBG30697.1\|1205035_1205740_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QBG30698.1\|1205929_1206745_-	aminoglycoside O-phosphotransferase APH(3')-Ia	A0A193DTG4	Autographa_californica_nuclear_polyhedrosis_virus	6.1e-163	100.0
1204973:1205792	attR	NA	NA	NA	NA
QBG30699.1\|1206895_1207600_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
QBG30700.1\|1207734_1208085_-	DUF305 domain-containing protein	A0A218MND9	uncultured_virus	8.1e-16	61.4
QBG30701.1\|1208232_1208664_-	silver-binding protein SilE	NA	NA	NA	NA
QBG30702.1\|1208908_1210390_-	copper/silver sensor histidine kinase SilS	W8CYF6	Bacillus_phage	1.8e-27	30.1
QBG30703.1\|1210382_1211063_-	copper/silver response regulator transcription factor SilR	W8CYM9	Bacillus_phage	2.7e-31	36.0

DBSCAN-SWA_3

1238360 : 1294237

Escherichia_phage(38.46%)

transposase,integrase

attL 1232847:1232861|attR 1295423:1295437

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
1232847:1232861	attL	NA	NA	NA	NA
QBG30727.1\|1238360_1239581_+\|transposase	ISL3 family transposase	NA	NA	NA	NA
QBG30728.1\|1239827_1240289_+	hypothetical protein	A0A2H4IBJ0	Erwinia_phage	7.7e-14	37.9
QBG30729.1\|1240318_1240726_+	hypothetical protein	NA	NA	NA	NA
QBG34076.1\|1240776_1241094_-	hypothetical protein	NA	NA	NA	NA
QBG34077.1\|1241470_1241821_-	hypothetical protein	NA	NA	NA	NA
QBG30730.1\|1243685_1244078_+	cysteine hydrolase	NA	NA	NA	NA
QBG30731.1\|1244215_1245100_+	EamA family transporter	NA	NA	NA	NA
QBG30732.1\|1245131_1246331_-	tetracycline efflux MFS transporter Tet(A)	NA	NA	NA	NA
QBG30733.1\|1246409_1247087_+	TetR family transcriptional regulator	NA	NA	NA	NA
QBG30734.1\|1247118_1247361_-	relaxase	NA	NA	NA	NA
QBG30735.1\|1248998_1249703_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.4e-138	99.6
QBG34078.1\|1253519_1253606_+	tetracycline resistance determinant leader peptide	NA	NA	NA	NA
QBG30736.1\|1253621_1255541_+	tetracycline resistance ribosomal protection protein Tet(M)	A0A1S5SF82	Streptococcus_phage	0.0e+00	100.0
QBG30737.1\|1257636_1258497_-	class A broad-spectrum beta-lactamase TEM-1	Q1MVP3	Enterobacteria_phage	4.6e-161	100.0
QBG30738.1\|1258671_1259376_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.2e-138	99.6
QBG30739.1\|1259533_1261360_-	OLD family endonuclease	NA	NA	NA	NA
QBG30740.1\|1261923_1262223_-	XRE family transcriptional regulator	NA	NA	NA	NA
QBG30741.1\|1262575_1263502_-	hypothetical protein	NA	NA	NA	NA
QBG30742.1\|1263513_1265070_-\|transposase	transposase	NA	NA	NA	NA
QBG30743.1\|1266558_1268682_-\|transposase	transposase	NA	NA	NA	NA
QBG30744.1\|1268668_1269511_-\|transposase	transposase	NA	NA	NA	NA
QBG30745.1\|1270641_1271346_+\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	3.4e-138	99.6
QBG30746.1\|1272186_1272372_-	hypothetical protein	NA	NA	NA	NA
QBG30747.1\|1272511_1272844_-	quaternary ammonium compound efflux SMR transporter QacL	E5E3Y9	Acinetobacter_phage	2.0e-08	35.3
QBG30748.1\|1273013_1273805_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA1	NA	NA	NA	NA
QBG30749.1\|1273897_1275157_-	chloramphenicol efflux MFS transporter CmlA1	S4TR35	Salmonella_phage	4.8e-26	31.7
QBG30750.1\|1275418_1276210_-	ANT(3'')-Ia family aminoglycoside nucleotidyltransferase AadA2	NA	NA	NA	NA
QBG30751.1\|1276267_1276876_-	HAD-IB family hydrolase	NA	NA	NA	NA
QBG30752.1\|1276971_1277814_-	alpha/beta fold putative hydrolase EstX	W8EKH7	Mycobacterium_phage	3.0e-08	26.1
QBG30753.1\|1277980_1278847_+\|integrase	integron integrase	A0A1P8DJJ6	Virus_Rctr41k	1.3e-38	39.4
QBG30754.1\|1278737_1279442_-\|transposase	IS6-like element IS26 family transposase	A0A077SL39	Escherichia_phage	1.8e-139	100.0
QBG30755.1\|1279925_1281446_+	FliC/FljB family flagellin	NA	NA	NA	NA
QBG30756.1\|1281513_1282053_+	phase 1 flagellin gene repressor FljA	NA	NA	NA	NA
QBG30757.1\|1282832_1283995_-\|transposase	IS3 family transposase	U5P429	Shigella_phage	5.2e-51	41.9
QBG30758.1\|1284273_1286256_+	DNA helicase	NA	NA	NA	NA
QBG30759.1\|1286252_1286891_+	hypothetical protein	NA	NA	NA	NA
QBG30760.1\|1288604_1289201_-	DUF4102 domain-containing protein	A0A1B5FPC6	Escherichia_phage	2.6e-99	91.3
QBG34079.1\|1289778_1291062_+	hypothetical protein	NA	NA	NA	NA
QBG30761.1\|1291321_1293196_-	hypothetical protein	NA	NA	NA	NA
QBG30762.1\|1293361_1294237_-\|integrase	integrase	NA	NA	NA	NA
1295423:1295437	attR	NA	NA	NA	NA

DBSCAN-SWA_4

1769662 : 1781953

Salmonella_phage(45.45%)

holin,tail

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBG31162.1\|1769662_1772029_+	SPI-2 type III secretion system effector E3 ubiquitin transferase SspH2	Q9MBL9	Phage_Gifsy-2	2.9e-72	88.7
QBG31163.1\|1772357_1773347_+	DUF968 domain-containing protein	A0A1C9IHZ5	Salmonella_phage	2.3e-188	97.3
QBG31164.1\|1773361_1773730_+	antitermination protein Q	A5LH77	Enterobacteria_phage	7.4e-52	81.7
QBG31165.1\|1773758_1775090_-	NTPase	R9TRQ8	Vibrio_phage	2.1e-19	28.5
QBG31166.1\|1775386_1775716_+\|holin	phage holin, lambda family	Q8SBE1	Shigella_phage	3.9e-36	94.6
QBG31167.1\|1776308_1777550_+	hypothetical protein	Q8HAB4	Salmonella_phage	1.0e-52	95.3
QBG31168.1\|1777552_1778080_+\|tail	tail fiber assembly protein	A0A1S6KZZ1	Salmonella_phage	3.1e-11	31.3
QBG31169.1\|1778457_1778901_+\|tail	tail fiber assembly protein	A0A0F7LDZ0	Escherichia_phage	1.4e-28	43.9
QBG31170.1\|1778954_1780784_-	acyltransferase	C6ZR20	Salmonella_phage	3.0e-61	29.6
QBG31171.1\|1781131_1781422_-	DinI family protein	S4TND2	Salmonella_phage	4.7e-25	83.3
QBG31172.1\|1781449_1781953_+	LexA family transcriptional regulator	Q1MVE7	Enterobacteria_phage	9.5e-50	71.3

DBSCAN-SWA_5

1854030 : 1863201

Enterobacteria_phage(66.67%)

tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBG31237.1\|1854030_1854978_+	ABC transporter ATP-binding protein	G3M9Y6	Bacillus_virus	1.7e-23	31.2
QBG31238.1\|1854961_1855693_+	ABC transporter permease	NA	NA	NA	NA
QBG31239.1\|1855673_1855781_-	protein YohO	NA	NA	NA	NA
QBG31240.1\|1855840_1856572_-	HTH-type transcriptional regulator MlrA	Q9EYF2	Enterobacteria_phage	4.5e-101	87.9
QBG31241.1\|1856794_1858480_+	sensor histidine kinase	Q9EYF3	Enterobacteria_phage	6.2e-279	91.1
QBG31242.1\|1858476_1859196_+	two-component system response regulator BtsR	NA	NA	NA	NA
QBG31243.1\|1859242_1859710_+	DUF1456 family protein	Q9EYF4	Enterobacteria_phage	3.9e-74	90.3
QBG31244.1\|1859766_1860297_-	DUF1307 domain-containing protein	NA	NA	NA	NA
QBG31245.1\|1860468_1860927_-	DUF1307 domain-containing protein	Q9EYF5	Enterobacteria_phage	8.4e-53	72.5
QBG31246.1\|1861167_1863201_-\|tRNA	methionine--tRNA ligase	A0A1V0SDF2	Indivirus	1.0e-54	27.6

DBSCAN-SWA_6

1931508 : 1942014

Enterobacteria_phage(37.5%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBG31299.1\|1931508_1932912_+	colanic acid biosynthesis protein WcaM	A0A291LBB9	Klebsiella_phage	2.3e-21	27.1
QBG31300.1\|1933089_1933983_+	GalU regulator GalF	A0A127AW70	Bacillus_phage	4.8e-44	42.2
QBG31301.1\|1934359_1935445_+	dTDP-glucose 4,6-dehydratase	I7HTA3	Enterobacteria_phage	1.2e-102	53.9
QBG31302.1\|1935444_1936344_+	dTDP-4-dehydrorhamnose reductase	A0A291LA50	Escherichia_phage	1.4e-30	36.3
QBG31303.1\|1936391_1937270_+	glucose-1-phosphate thymidylyltransferase RfbA	I7I009	Enterobacteria_phage	9.3e-109	65.5
QBG31304.1\|1937270_1937822_+	dTDP-4-dehydrorhamnose 3,5-epimerase	I7HJC4	Enterobacteria_phage	2.2e-52	58.0
QBG31305.1\|1937827_1938820_+	CDP-6-deoxy-delta-3,4-glucoseen reductase	NA	NA	NA	NA
QBG31306.1\|1938816_1939590_+	glucose-1-phosphate cytidylyltransferase	NA	NA	NA	NA
QBG31307.1\|1939594_1940674_+	CDP-glucose 4,6-dehydratase	A0A222YY99	Synechococcus_phage	6.6e-16	24.1
QBG31308.1\|1940700_1942014_+	lipopolysaccharide biosynthesis protein RfbH	H8ZJ36	Ostreococcus_tauri_virus	7.0e-52	35.1

DBSCAN-SWA_7

2028014 : 2038617

Morganella_phage(25.0%)

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBG31388.1\|2028014_2028488_-	peptidase	A0A0F6TJ61	Escherichia_coli_O157_typing_phage	7.1e-39	77.6
QBG31389.1\|2029135_2029426_-	DUF4102 domain-containing protein	H2BDA3	Pseudomonas_phage	3.0e-08	49.1
QBG31390.1\|2029797_2030595_-	DgsA anti-repressor MtfA	NA	NA	NA	NA
QBG31391.1\|2030855_2031098_+	hypothetical protein	NA	NA	NA	NA
QBG31392.1\|2031075_2031237_+	hypothetical protein	NA	NA	NA	NA
QBG31393.1\|2031363_2031783_+	translesion error-prone DNA polymerase V autoproteolytic subunit	A0A1W6JNS2	Morganella_phage	8.5e-36	60.5
QBG31394.1\|2031785_2033054_+	translesion error-prone DNA polymerase V subunit UmuC	I6RSM4	Salmonella_phage	4.2e-227	92.2
QBG31395.1\|2033508_2033721_+	cold-shock protein	A0A1W6JNX5	Morganella_phage	3.9e-21	70.0
QBG34113.1\|2033731_2033920_+	cold-shock protein	NA	NA	NA	NA
QBG31396.1\|2034180_2035377_-	porin OmpS1	Q1MVN1	Enterobacteria_phage	1.8e-110	56.1
QBG31397.1\|2036026_2036326_+	hypothetical protein	NA	NA	NA	NA
QBG31398.1\|2036417_2037113_+	phosphohydrolase	A0A1D6Y7U0	Golden_Marseillevirus	2.8e-07	27.1
QBG31399.1\|2037186_2038617_+	DNA cytosine methyltransferase	E5E3X6	Burkholderia_phage	1.0e-104	57.4

DBSCAN-SWA_8

2141938 : 2191255

Enterobacteria_phage(23.91%)

portal,holin,tail,protease,integrase,lysis

attL 2134700:2134715|attR 2191540:2191555

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
2134700:2134715	attL	NA	NA	NA	NA
QBG31503.1\|2141938_2142169_-	DNA polymerase III subunit theta	H9C187	Pectobacterium_phage	2.9e-14	60.3
QBG31504.1\|2142306_2142681_+	CopC domain-containing protein YobA	NA	NA	NA	NA
QBG31505.1\|2142681_2143557_+	copper resistance D family protein	NA	NA	NA	NA
QBG31506.1\|2143573_2143927_+	DUF2511 domain-containing protein	NA	NA	NA	NA
QBG31507.1\|2144300_2145380_-\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	9.7e-100	50.8
QBG31508.1\|2145360_2145633_-	excisionase	A0A2H4J5E1	uncultured_Caudovirales_phage	1.8e-10	39.7
QBG34119.1\|2145693_2145930_-	hypothetical protein	NA	NA	NA	NA
QBG31509.1\|2146220_2146400_-	DUF1187 family protein	NA	NA	NA	NA
QBG31510.1\|2146387_2147557_-	DUF550 domain-containing protein	A0A1R3Y5Q8	Salmonella_virus	3.3e-85	77.0
QBG31511.1\|2147553_2147886_-	hypothetical protein	S4TNP2	Salmonella_phage	8.8e-20	81.8
QBG31512.1\|2147878_2148199_-	hypothetical protein	A0A0U2QV73	Escherichia_phage	3.6e-34	60.6
QBG31513.1\|2148234_2149065_-	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.7e-104	71.6
QBG31514.1\|2149057_2151748_-	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	1.8e-115	75.3
QBG31515.1\|2151888_2152224_-	hypothetical protein	NA	NA	NA	NA
QBG31516.1\|2152298_2152583_-	hypothetical protein	K7PGY4	Enterobacteria_phage	1.7e-08	53.2
QBG31517.1\|2153101_2153368_-	hypothetical protein	NA	NA	NA	NA
QBG31518.1\|2153783_2154209_-	helix-turn-helix domain-containing protein	K7PH71	Enterobacterial_phage	1.2e-13	56.3
QBG31519.1\|2154305_2154560_+	XRE family transcriptional regulator	K7PKH4	Enterobacteria_phage	1.2e-16	59.4
QBG31520.1\|2154546_2155041_+	hypothetical protein	NA	NA	NA	NA
QBG31521.1\|2155087_2156095_+	DUF1376 domain-containing protein	A0A0U2RT81	Escherichia_phage	1.7e-122	67.0
QBG31522.1\|2156087_2156549_+	replication protein	A0A0U2JGJ0	Escherichia_phage	3.0e-66	74.2
QBG31523.1\|2156561_2156957_+	DUF977 family protein	A0A088CBK9	Shigella_phage	2.9e-17	37.0
QBG31524.1\|2157279_2157483_+	hypothetical protein	NA	NA	NA	NA
QBG31525.1\|2157386_2157878_+	DUF1076 domain-containing protein	B6DZB9	Enterobacteria_phage	9.7e-23	51.5
QBG31526.1\|2158097_2158403_+	hypothetical protein	NA	NA	NA	NA
QBG31527.1\|2158466_2159066_+	DUF1367 family protein	A0A0U2RT94	Escherichia_phage	1.9e-97	83.4
QBG31528.1\|2159062_2159290_+	DNA breaking-rejoining protein	A0A0M4RU10	Salmonella_phage	3.6e-17	72.5
QBG31529.1\|2159286_2159433_+	YlcG family protein	A0A0M5M7B2	Salmonella_phage	4.3e-19	97.9
QBG31530.1\|2159422_2160220_+	antitermination protein	A0A0M4S661	Salmonella_phage	6.8e-151	99.2
QBG31531.1\|2160618_2160744_+	hypothetical protein	NA	NA	NA	NA
QBG31532.1\|2160879_2161329_-	lipoprotein	NA	NA	NA	NA
QBG31533.1\|2161689_2162376_-	PipA/GogA/GtgA family type III secretion system effector	Q9MBM0	Phage_Gifsy-2	1.5e-130	99.1
QBG34120.1\|2162651_2162981_+\|holin	phage holin, lambda family	A0A0M3ULK9	Salmonella_phage	5.8e-56	100.0
QBG31534.1\|2162964_2163417_+	lysozyme	A0A0M4R365	Salmonella_phage	2.7e-80	98.7
QBG31535.1\|2163434_2163914_+\|lysis	lysis protein	Q56118	Enterobacteria_phage	1.4e-55	77.0
QBG31536.1\|2164121_2164655_+	DUF1441 family protein	A0A291AWV8	Escherichia_phage	2.3e-33	47.5
QBG31537.1\|2166745_2166952_+	primosomal replication protein PriB/PriC domain protein	NA	NA	NA	NA
QBG34121.1\|2166978_2168496_+\|portal	phage portal protein	A0A291AWU2	Escherichia_phage	4.4e-175	64.9
QBG34122.1\|2168419_2170501_+\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	4.8e-265	69.5
QBG31538.1\|2170591_2170915_+	DUF2190 family protein	K7PLV6	Enterobacteria_phage	7.7e-29	61.3
QBG31539.1\|2170907_2171207_+	ATP-binding protein	K7PH43	Enterobacteria_phage	4.5e-15	45.1
QBG31540.1\|2171187_2171754_+\|tail	phage tail protein	Q9G063	Phage_Gifsy-2	9.5e-14	97.8
QBG31541.1\|2171750_2172152_+\|tail	phage tail protein	K7PHM6	Enterobacterial_phage	1.3e-41	60.2
QBG31542.1\|2172163_2172913_+\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	5.3e-89	68.2
QBG31543.1\|2172958_2173357_+\|tail	phage minor tail protein G	K7PLV8	Enterobacteria_phage	8.6e-30	56.8
QBG31544.1\|2173353_2173683_+\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	5.0e-23	50.9
QBG34123.1\|2173762_2176750_+\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.4e-260	61.8
QBG31545.1\|2176746_2177079_+\|tail	phage tail protein	A5LH39	Enterobacteria_phage	2.6e-35	61.5
QBG31546.1\|2177177_2177702_+	Ail/OmpX	A0A1B0VBR9	Salmonella_phage	1.8e-19	35.3
QBG31547.1\|2177791_2178325_-	superoxide dismutase [Cu-Zn]	Q9MC02	Salmonella_phage	1.8e-46	54.0
QBG31548.1\|2178414_2179110_+\|tail	phage minor tail protein L	A0A0K2FJ01	Enterobacteria_phage	1.0e-89	66.7
QBG31549.1\|2179119_2179857_+\|tail	phage tail protein	A0A0P0ZE89	Stx2-converting_phage	1.2e-114	76.1
QBG31550.1\|2179754_2180459_+\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	2.4e-67	63.1
QBG31551.1\|2183919_2184162_+	hypothetical protein	NA	NA	NA	NA
QBG31552.1\|2184215_2186894_+	shikimate transporter	A0A1B0VFW4	Salmonella_phage	1.5e-146	63.0
QBG31553.1\|2186908_2187427_+\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	2.5e-45	51.4
QBG34124.1\|2188070_2188322_-\|tail	phage tail protein	A0A1B0VCD0	Salmonella_phage	1.6e-18	62.0
QBG31554.1\|2188636_2189515_+	SPI-2 type III secretion system effector SseI	Q9MBL9	Phage_Gifsy-2	9.4e-170	97.3
QBG31555.1\|2190162_2190789_-	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	1.4e-66	62.6
QBG31556.1\|2191042_2191255_+	isocitrate dehydrogenase	Q77Z09	Phage_21	1.5e-20	92.6
2191540:2191555	attR	NA	NA	NA	NA

DBSCAN-SWA_9

2806407 : 2860341

Salmonella_phage(22.86%)

head,tail,protease,integrase,lysis

attL 2818273:2818287|attR 2850016:2850030

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBG32152.1\|2806407_2807289_-\|protease	protease HtpX	NA	NA	NA	NA
QBG32153.1\|2807482_2809531_-	carboxy terminal-processing peptidase	A0A0R6PIZ1	Moraxella_phage	8.0e-87	33.5
QBG32154.1\|2809550_2810237_-	RNA chaperone ProQ	NA	NA	NA	NA
QBG32155.1\|2810334_2810919_-	GAF domain-containing protein	NA	NA	NA	NA
QBG32156.1\|2810960_2812244_+	paraquat-inducible protein A	NA	NA	NA	NA
QBG32157.1\|2812206_2814846_+	PqiB family protein	NA	NA	NA	NA
QBG32158.1\|2814923_2816363_+	16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF	NA	NA	NA	NA
QBG32159.1\|2816477_2816717_+	DUF1480 family protein	NA	NA	NA	NA
QBG32160.1\|2816827_2817019_+	DUF1482 family protein	NA	NA	NA	NA
QBG32161.1\|2817037_2817688_-	protein-serine/threonine phosphatase	A0A222YWF0	Escherichia_phage	1.1e-58	51.4
QBG32162.1\|2817911_2818076_-	hypothetical protein	NA	NA	NA	NA
2818273:2818287	attL	NA	NA	NA	NA
QBG32163.1\|2818360_2819083_-	SPI-1 type III secretion system guanine nucleotide exchange factor SopE2	NA	NA	NA	NA
QBG32164.1\|2819766_2820162_+	DUF1398 domain-containing protein	C6ZCX4	Enterobacteria_phage	9.2e-16	32.8
QBG32165.1\|2820491_2820968_+	hypothetical protein	NA	NA	NA	NA
QBG32166.1\|2821355_2821775_-	GNAT family N-acetyltransferase	NA	NA	NA	NA
QBG32167.1\|2821903_2822098_-	hypothetical protein	NA	NA	NA	NA
QBG32168.1\|2822144_2822414_+	hypothetical protein	Q6UAV5	Klebsiella_phage	1.5e-06	39.0
QBG32169.1\|2822579_2822720_+	hypothetical protein	NA	NA	NA	NA
QBG32170.1\|2824183_2824552_+\|integrase	integrase	K7PHK0	Enterobacteria_phage	5.4e-18	39.8
QBG32171.1\|2824489_2824747_-	hypothetical protein	NA	NA	NA	NA
QBG34145.1\|2825037_2825238_-	hypothetical protein	NA	NA	NA	NA
QBG32172.1\|2825855_2826770_+	EamA family transporter	NA	NA	NA	NA
QBG32173.1\|2826902_2827061_+	hypothetical protein	NA	NA	NA	NA
QBG32174.1\|2827070_2827685_+	disulfide bond formation protein B	NA	NA	NA	NA
QBG32175.1\|2828437_2828704_-	hypothetical protein	NA	NA	NA	NA
QBG32176.1\|2828832_2828958_-	arsenic transporter	NA	NA	NA	NA
QBG32177.1\|2829220_2829337_+\|tail	phage tail protein	NA	NA	NA	NA
QBG32178.1\|2829527_2829728_+	phage virulence factor	NA	NA	NA	NA
QBG34146.1\|2829824_2830706_-\|tail	phage tail protein	A0A0M4RTP2	Salmonella_phage	2.2e-65	76.0
QBG32179.1\|2831178_2831367_+	hypothetical protein	NA	NA	NA	NA
QBG32180.1\|2831431_2831599_+	lytic enzyme	NA	NA	NA	NA
QBG32181.1\|2831855_2832389_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	1.4e-11	48.3
QBG32182.1\|2832442_2832673_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	6.1e-28	93.7
QBG34148.1\|2832862_2833357_+	RecE	A0A0U2I1R6	Escherichia_phage	8.2e-22	68.9
QBG34147.1\|2833416_2834271_+\|integrase	integrase	A0A2H4IYC8	uncultured_Caudovirales_phage	3.6e-73	50.9
QBG32183.1\|2835215_2836016_+	hypothetical protein	NA	NA	NA	NA
QBG32184.1\|2836495_2837218_+	SPI-1 type III secretion system guanine nucleotide exchange factor SopE	NA	NA	NA	NA
QBG32185.1\|2837418_2837994_-\|tail	tail fiber assembly protein	A0A0M4RTP2	Salmonella_phage	1.9e-94	88.9
QBG32186.1\|2837993_2839445_-\|tail	tail fiber protein	E5G6P0	Salmonella_phage	8.6e-43	70.7
QBG32187.1\|2839434_2840037_-	DUF2612 domain-containing protein	A0A2R3UAM9	Myoviridae_environmental_samples	4.3e-33	38.9
QBG32188.1\|2840038_2841280_-	hypothetical protein	A0A077KGW9	Edwardsiella_phage	3.5e-101	49.6
QBG32189.1\|2841276_2841633_-	hypothetical protein	A0A077KCA1	Edwardsiella_phage	9.5e-20	49.1
QBG32190.1\|2841645_2842323_-	oxidoreductase	A0A077KAY0	Edwardsiella_phage	1.2e-31	36.0
QBG32191.1\|2842303_2843173_-	hypothetical protein	A0A077KC17	Edwardsiella_phage	1.2e-31	32.7
QBG32192.1\|2843216_2843519_-	hypothetical protein	A0A077K9U4	Edwardsiella_phage	7.0e-24	49.5
QBG32193.1\|2844224_2846396_-	lytic transglycosylase domain-containing protein	A0A0M4REK7	Salmonella_phage	1.4e-49	67.1
QBG32194.1\|2846379_2846562_-	transcription elongation factor GreA	NA	NA	NA	NA
QBG32195.1\|2846603_2847008_-	hypothetical protein	H9C0W7	Aeromonas_phage	1.8e-19	44.8
QBG32196.1\|2847007_2847454_-	hypothetical protein	Q2NPD1	Xanthomonas_phage	4.8e-21	40.4
QBG32197.1\|2847454_2848939_-	DUF3383 domain-containing protein	A0A077KGV4	Edwardsiella_phage	3.1e-96	41.0
QBG32198.1\|2848919_2849465_-	hypothetical protein	NA	NA	NA	NA
QBG32199.1\|2849449_2849815_-	hypothetical protein	A0A077KAW7	Edwardsiella_phage	3.9e-21	40.5
QBG32200.1\|2849811_2850396_-	hypothetical protein	H9C0W2	Aeromonas_phage	2.1e-16	30.3
2850016:2850030	attR	NA	NA	NA	NA
QBG32201.1\|2850389_2850836_-	DUF4054 domain-containing protein	A0A068CGG9	Acinetobacter_phage	1.8e-15	40.6
QBG32202.1\|2850842_2851190_-	hypothetical protein	H9C0V9	Aeromonas_phage	3.9e-10	40.2
QBG34149.1\|2851193_2852222_-	DUF2184 domain-containing protein	A0A219YBB0	Aeromonas_phage	2.3e-82	48.7
QBG32203.1\|2852221_2852704_-	hypothetical protein	A0A1X9SFC3	Acinetobacter_phage	1.1e-26	48.8
QBG32204.1\|2852705_2854052_-	DUF2213 domain-containing protein	A0A219YCD3	Aeromonas_phage	5.5e-68	36.5
QBG34150.1\|2854048_2854738_-\|head	phage head morphogenesis protein	H9C0V1	Aeromonas_phage	2.9e-57	48.7
QBG32205.1\|2854778_2856299_-	DUF1073 domain-containing protein	A0A2R3UAL5	Myoviridae_environmental_samples	1.5e-106	43.9
QBG32206.1\|2856298_2857918_-	TerL protein	A0A0M5M1R6	Salmonella_phage	7.3e-261	81.2
QBG32207.1\|2857920_2858550_-	hypothetical protein	A0A0M3ULJ9	Salmonella_phage	5.6e-108	98.1
QBG34151.1\|2858620_2858803_-	DUF826 domain-containing protein	NA	NA	NA	NA
QBG34152.1\|2859028_2859484_-\|lysis	lysis protein	A0A0M4RD57	Salmonella_phage	4.3e-57	80.5
QBG32208.1\|2859801_2860341_-	lysozyme	K7PLY1	Enterobacteria_phage	2.2e-76	70.6

DBSCAN-SWA_10

2863807 : 2880799

Salmonella_phage(21.05%)

integrase

attL 2870229:2870242|attR 2881408:2881421

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBG32212.1\|2863807_2864848_+	DNA cytosine methyltransferase	A0A0R6PG08	Moraxella_phage	3.7e-64	39.5
QBG34154.1\|2864856_2865210_-	antitermination protein	A0A0P0ZCW0	Stx2-converting_phage	8.4e-53	82.3
QBG34155.1\|2865559_2865841_-	DUF1364 family protein	K7P7Q1	Enterobacteria_phage	1.2e-38	84.8
QBG32213.1\|2865837_2866032_-	hypothetical protein	S4TNP0	Salmonella_phage	1.0e-12	59.6
QBG32214.1\|2866028_2866466_-	recombination protein NinB	G8C7V3	Escherichia_phage	5.2e-52	68.8
QBG32215.1\|2867042_2867198_-	type I toxin-antitoxin system Hok family toxin	A0A0U2QV81	Escherichia_phage	1.2e-14	84.3
QBG32216.1\|2867401_2867674_-	hypothetical protein	NA	NA	NA	NA
QBG32217.1\|2867670_2868066_-	DUF977 family protein	A0A088CBK9	Shigella_phage	4.4e-18	38.8
QBG32218.1\|2868083_2868836_-	DNA replication protein DnaC	A0A088CBP4	Shigella_phage	2.9e-103	76.5
QBG32219.1\|2869096_2869339_+	hypothetical protein	NA	NA	NA	NA
QBG32220.1\|2869762_2870257_-	hypothetical protein	NA	NA	NA	NA
2870229:2870242	attL	NA	NA	NA	NA
QBG32221.1\|2870253_2870511_-	Rha family transcriptional regulator	A0A0M4QX15	Salmonella_phage	3.2e-17	48.1
QBG34156.1\|2870616_2871006_+	helix-turn-helix domain-containing protein	A0A0M4R5D1	Salmonella_phage	1.0e-19	47.9
QBG32222.1\|2871173_2871329_+	DUF1391 domain-containing protein	M4QQ57	Salicola_phage	8.0e-08	55.3
QBG32223.1\|2871764_2872007_-	hypothetical protein	NA	NA	NA	NA
QBG32224.1\|2872285_2872561_+	hypothetical protein	NA	NA	NA	NA
QBG32225.1\|2872564_2872771_+	cell division inhibitor protein	I6PBM9	Cronobacter_phage	3.0e-10	45.6
QBG32226.1\|2872846_2873182_+	hypothetical protein	NA	NA	NA	NA
QBG32227.1\|2873322_2876013_+	exodeoxyribonuclease VIII	Q9QF34	Lambdoid_phage	1.8e-115	75.3
QBG32228.1\|2876005_2876836_+	recombination protein RecT	A0A1P8DTF2	Proteus_phage	1.0e-104	72.0
QBG32229.1\|2876871_2877192_+	hypothetical protein	A0A222YY67	Escherichia_phage	2.1e-34	60.2
QBG32230.1\|2877184_2877517_+	hypothetical protein	S4TNP2	Salmonella_phage	3.8e-15	74.2
QBG32231.1\|2877513_2878017_+	Eaa protein	A0A075B8H2	Enterobacteria_phage	6.0e-36	92.3
QBG32232.1\|2878066_2878303_+	excisionase	NA	NA	NA	NA
QBG32233.1\|2878292_2879435_+\|integrase	integrase	O21929	Phage_21	1.8e-173	80.0
QBG32234.1\|2879548_2880799_-	NADP-dependent isocitrate dehydrogenase	Q77Z09	Phage_21	6.7e-20	92.6
2881408:2881421	attR	NA	NA	NA	NA

DBSCAN-SWA_11

3131822 : 3139842

Enterobacteria_phage(16.67%)

protease,transposase

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBG32472.1\|3131822_3133077_+\|transposase	IS3-like element ISSen1 family transposase	Q6H9S3	Enterobacteria_phage	5.4e-17	33.9
QBG34161.1\|3133092_3133368_-	hypothetical protein	NA	NA	NA	NA
QBG32473.1\|3133478_3135755_-\|protease	ATP-dependent Clp protease ATP-binding subunit ClpA	A0A223W0B1	Agrobacterium_phage	6.2e-165	42.3
QBG32474.1\|3135785_3136106_-\|protease	ATP-dependent Clp protease adapter ClpS	A0A1B1IT64	uncultured_Mediterranean_phage	4.5e-13	45.7
QBG32475.1\|3136429_3136651_+	cold shock-like protein CspD	A0A2H4N7Y6	Lake_Baikal_phage	9.3e-18	64.2
QBG32476.1\|3136780_3138727_-	macrolide ABC transporter ATP-binding protein/permease MacB	G9BWD6	Planktothrix_phage	2.0e-39	43.1
QBG32477.1\|3138723_3139842_-	macrolide transporter subunit MacA	A0A140XAI1	Dickeya_phage	1.4e-08	38.9

DBSCAN-SWA_12

3497877 : 3562822

Enterobacteria_phage(31.11%)

terminase,holin,tail,protease,tRNA,integrase

attL 3495830:3495847|attR 3553710:3553727

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
3495830:3495847	attL	NA	NA	NA	NA
QBG32788.1\|3497877_3498240_+	GtrA family protein	I1TED9	Salmonella_phage	3.9e-61	100.0
QBG32789.1\|3498236_3499163_+	glycosyltransferase	I1TED8	Salmonella_phage	3.8e-169	97.7
QBG32790.1\|3499143_3500796_+	hypothetical protein	B9UDL6	Salmonella_phage	6.7e-84	37.9
QBG34181.1\|3501818_3501983_+\|integrase	integrase	B9UDL9	Salmonella_phage	2.5e-12	78.6
QBG32791.1\|3502524_3502758_+	DinI family protein	K7P797	Enterobacteria_phage	4.9e-17	63.0
QBG32792.1\|3503111_3503537_-	arsenate reductase (glutaredoxin)	A0A2H4J8T1	uncultured_Caudovirales_phage	5.0e-52	72.1
QBG32793.1\|3503549_3504839_-	arsenic transporter	A0A2H4J144	uncultured_Caudovirales_phage	3.5e-165	70.2
QBG32794.1\|3504883_3505204_-	transcriptional regulator	A0A2H4J145	uncultured_Caudovirales_phage	3.2e-19	45.7
QBG32795.1\|3505289_3505988_+	arsenical resistance protein ArsH	A0A2H4J5V6	uncultured_Caudovirales_phage	1.4e-88	67.7
QBG34182.1\|3506287_3506959_+	SOS response-associated peptidase	A0A2H4J5W2	uncultured_Caudovirales_phage	9.6e-82	61.3
QBG32796.1\|3507677_3508448_+	transporter substrate-binding domain-containing protein	NA	NA	NA	NA
QBG32797.1\|3508545_3508701_+\|tail	phage tail protein	E5G6P4	Salmonella_phage	2.2e-05	75.0
QBG32798.1\|3509272_3509791_-\|tail	phage tail protein	A0A0U2QV64	Escherichia_phage	2.5e-45	51.4
QBG32799.1\|3509805_3512484_-	shikimate transporter	A0A1B0VFW4	Salmonella_phage	1.5e-157	68.3
QBG32800.1\|3512537_3512780_-	hypothetical protein	NA	NA	NA	NA
QBG32801.1\|3512818_3516181_-	host specificity protein J	K7PKJ2	Enterobacteria_phage	0.0e+00	80.1
QBG32802.1\|3516242_3516890_-\|tail	tail assembly protein	A5LH42	Enterobacteria_phage	9.3e-90	78.1
QBG32803.1\|3516787_3517525_-\|tail	phage tail protein	K7PLW1	Enterobacteria_phage	6.8e-129	85.0
QBG32804.1\|3517531_3518230_-\|tail	phage minor tail protein L	A0A1B5FP81	Escherichia_phage	2.7e-103	75.9
QBG32805.1\|3518239_3518569_-\|tail	phage tail protein	A5LH39	Enterobacteria_phage	1.3e-42	70.4
QBG32806.1\|3518571_3521667_-\|tail	phage tail tape measure protein	A0A291AWX1	Escherichia_phage	1.7e-277	61.4
QBG32807.1\|3521638_3521977_-\|tail	phage tail assembly protein T	A5LH37	Enterobacteria_phage	1.3e-31	62.4
QBG32808.1\|3521973_3522369_-\|tail	phage minor tail protein G	A5LH36	Enterobacteria_phage	2.3e-30	56.5
QBG32809.1\|3522419_3523166_-\|tail	phage tail protein	A0A291AWU6	Escherichia_phage	1.9e-99	76.9
QBG32810.1\|3523173_3523575_-\|tail	phage tail protein	A0A291AWY2	Escherichia_phage	1.1e-51	69.2
QBG32811.1\|3523571_3524156_-\|tail	phage tail protein	A5LH33	Enterobacteria_phage	1.1e-76	78.6
QBG32812.1\|3524159_3524435_-	DNA breaking-rejoining protein	K7PH43	Enterobacteria_phage	1.3e-13	42.9
QBG32813.1\|3524427_3524751_-	DUF2190 family protein	K7PLV6	Enterobacteria_phage	2.7e-29	64.2
QBG32814.1\|3524839_3527020_-\|protease	Clp protease ClpP	A0A291AWT6	Escherichia_phage	8.3e-276	71.9
QBG32815.1\|3528403_3528610_-	primosomal replication protein PriB/PriC domain protein	A5LH28	Enterobacteria_phage	1.1e-07	48.6
QBG32816.1\|3528606_3530721_-\|terminase	phage terminase large subunit family protein	Q9EYD1	Enterobacteria_phage	1.2e-295	70.3
QBG32817.1\|3530707_3531205_-	DUF1441 family protein	A5LH26	Enterobacteria_phage	2.8e-38	55.1
QBG34183.1\|3531862_3532396_-	hypothetical protein	NA	NA	NA	NA
QBG32818.1\|3532471_3532723_-	hypothetical protein	NA	NA	NA	NA
QBG32819.1\|3532719_3533256_-	DUF2514 domain-containing protein	A0A291LBG9	Klebsiella_phage	3.6e-07	47.9
QBG32820.1\|3533252_3533867_-	glycoside hydrolase family 19 protein	Q8HA86	Salmonella_phage	1.1e-108	94.1
QBG32821.1\|3533869_3534214_-\|holin	phage holin, lambda family	Q8HA87	Salmonella_phage	5.3e-44	100.0
QBG32822.1\|3535517_3535922_+	hypothetical protein	NA	NA	NA	NA
QBG32823.1\|3536037_3536841_-	antitermination protein	F1C595	Cronobacter_phage	6.7e-106	72.2
QBG32824.1\|3536934_3537849_-	hypothetical protein	F1C596	Cronobacter_phage	1.8e-59	47.9
QBG32825.1\|3537892_3538288_-	single-stranded DNA-binding protein	NA	NA	NA	NA
QBG32826.1\|3538284_3540426_-	DUF927 domain-containing protein	A0A1W6JPG0	Morganella_phage	1.3e-193	55.7
QBG32827.1\|3540435_3541083_-	hypothetical protein	A0A1B5FPB4	Escherichia_phage	9.1e-29	42.1
QBG34184.1\|3541075_3541459_-	hypothetical protein	NA	NA	NA	NA
QBG32828.1\|3541548_3541854_-	hypothetical protein	NA	NA	NA	NA
QBG32829.1\|3541850_3542645_-	ORF6N domain-containing protein	F1C5A3	Cronobacter_phage	1.2e-46	66.0
QBG32830.1\|3542655_3542976_-	hypothetical protein	A0A0P0ZDC0	Stx2-converting_phage	3.5e-21	73.1
QBG32831.1\|3542956_3543184_-	hypothetical protein	NA	NA	NA	NA
QBG32832.1\|3543339_3543738_-	DNA primase	A0A286SGR4	Klebsiella_phage	2.0e-10	54.2
QBG32833.1\|3543884_3544439_-	host cell division inhibitor Icd-like protein	NA	NA	NA	NA
QBG32834.1\|3544365_3544698_+	hypothetical protein	NA	NA	NA	NA
QBG32835.1\|3544777_3545374_-	Rha family transcriptional regulator	A0A1X9SFL9	Acinetobacter_phage	4.6e-19	47.7
QBG32836.1\|3545475_3545673_-	AlpA family transcriptional regulator	A0A1V0E8E5	Vibrio_phage	5.1e-07	46.3
QBG32837.1\|3545892_3546327_-	hypothetical protein	NA	NA	NA	NA
QBG32838.1\|3546323_3546629_-	hypothetical protein	NA	NA	NA	NA
QBG32839.1\|3546969_3548157_-	DUF4102 domain-containing protein	Q7M297	Enterobacteria_phage	1.3e-121	53.4
QBG32840.1\|3548462_3548699_-	hypothetical protein	NA	NA	NA	NA
QBG32841.1\|3548654_3549251_+	fimbriae biosynthesis transcriptional regulator FimW	NA	NA	NA	NA
QBG32842.1\|3549412_3549724_+	diguanylate cyclase	NA	NA	NA	NA
QBG32843.1\|3549742_3550465_+	fimbriae biosynthesis regulator FimY	NA	NA	NA	NA
QBG32844.1\|3551068_3551701_+	fimbriae biosynthesis transcriptional regulator FimZ	NA	NA	NA	NA
QBG32845.1\|3551746_3552265_-	fimbriae assembly protein	NA	NA	NA	NA
QBG32846.1\|3552274_3553282_-	type 1 fimbrin D-mannose specific adhesin FimH	NA	NA	NA	NA
QBG32847.1\|3553296_3555909_-	fimbrial biogenesis outer membrane usher protein	NA	NA	NA	NA
3553710:3553727	attR	NA	NA	NA	NA
QBG32848.1\|3555939_3556632_-	molecular chaperone FimC	NA	NA	NA	NA
QBG32849.1\|3556675_3557209_-	type 1 fimbrial protein subunit FimI	NA	NA	NA	NA
QBG32850.1\|3557284_3557842_-	type 1 fimbrial protein subunit FimA	NA	NA	NA	NA
QBG32851.1\|3557831_3558026_-	hypothetical protein	NA	NA	NA	NA
QBG32852.1\|3558388_3559255_+	bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase FolD	A0A249XZQ2	Enterococcus_phage	4.2e-29	36.5
QBG32853.1\|3559256_3559469_+	ribosome-associated protein YbcJ	NA	NA	NA	NA
QBG32854.1\|3559596_3560142_+	metal-dependent hydrolase	NA	NA	NA	NA
QBG32855.1\|3560134_3560572_+	hypothetical protein	NA	NA	NA	NA
QBG32856.1\|3561436_3562822_-\|tRNA	cysteine--tRNA ligase	M1PG92	Moumouvirus	1.1e-44	35.5

DBSCAN-SWA_13

4549586 : 4596547

Burkholderia_phage(40.91%)

plate,tail,tRNA

Protein_ID	Protein_Def	Hit_ID	Hit_Def	E-value	Identity
QBG33709.1\|4549586_4550585_-\|tRNA	tRNA dihydrouridine(20/20a) synthase DusA	NA	NA	NA	NA
QBG33710.1\|4550672_4551983_-	conjugal transfer protein	NA	NA	NA	NA
QBG33711.1\|4552229_4552745_+	zinc uptake transcriptional repressor Zur	NA	NA	NA	NA
QBG34225.1\|4552844_4553054_-	CsbD family protein	NA	NA	NA	NA
QBG33712.1\|4553075_4553189_-	hypothetical protein	NA	NA	NA	NA
QBG33713.1\|4553185_4554511_-	MATE family efflux transporter DinF	NA	NA	NA	NA
QBG33714.1\|4554689_4555298_-	repressor LexA	Q9G0C2	Lactococcus_phage	1.0e-13	38.0
QBG33715.1\|4555406_4555775_-	diacylglycerol kinase	NA	NA	NA	NA
QBG33716.1\|4555945_4558366_+	glycerol-3-phosphate 1-O-acyltransferase	NA	NA	NA	NA
QBG33717.1\|4558464_4559337_-	4-hydroxybenzoate octaprenyltransferase	NA	NA	NA	NA
QBG33718.1\|4559350_4559848_-	chorismate--pyruvate lyase	NA	NA	NA	NA
QBG33719.1\|4560028_4560946_-	maltose operon protein MalM	NA	NA	NA	NA
QBG33720.1\|4561109_4562468_-	maltoporin	NA	NA	NA	NA
QBG33721.1\|4562556_4563666_-	maltose/maltodextrin ABC transporter ATP-binding protein MalK	Q6GZ03	Mycoplasma_phage	3.1e-16	46.6
QBG33722.1\|4564026_4565217_+	maltose/maltodextrin ABC transporter substrate-binding protein MalE	NA	NA	NA	NA
QBG33723.1\|4565348_4566893_+	maltose ABC transporter permease MalF	NA	NA	NA	NA
QBG33724.1\|4566907_4567798_+	maltose ABC transporter permease	NA	NA	NA	NA
QBG33725.1\|4567963_4568374_-	phosphate-starvation-inducible protein PsiE	NA	NA	NA	NA
QBG33726.1\|4568516_4570613_-	YjbH domain-containing protein	NA	NA	NA	NA
QBG33727.1\|4570612_4571347_-	hypothetical protein	NA	NA	NA	NA
QBG33728.1\|4571343_4571982_-	YjbF family lipoprotein	NA	NA	NA	NA
QBG34226.1\|4572045_4572288_-	hypothetical protein	NA	NA	NA	NA
QBG33729.1\|4572731_4574381_-	glucose-6-phosphate isomerase	NA	NA	NA	NA
QBG33730.1\|4574725_4576075_+	lysine-sensitive aspartokinase 3	NA	NA	NA	NA
QBG33731.1\|4576205_4576553_-	DNA-binding protein	Q6QIE8	Burkholderia_phage	4.9e-21	51.5
QBG33732.1\|4577131_4577419_+	hypothetical protein	Q6QIC8	Burkholderia_phage	5.1e-16	48.1
QBG33733.1\|4577421_4578027_+	lytic transglycosylase domain-containing protein	Q5ZQZ1	Pseudomonas_phage	6.5e-61	60.4
QBG33734.1\|4578039_4578354_+	hypothetical protein	Q6QIC4	Burkholderia_phage	6.4e-20	49.1
QBG33735.1\|4578513_4578939_+	hypothetical protein	NA	NA	NA	NA
QBG33736.1\|4578964_4579162_+	hypothetical protein	Q6QIB1	Burkholderia_phage	8.6e-07	52.9
QBG33737.1\|4579151_4580579_+\|tail	phage tail sheath family protein	A4JWK5	Burkholderia_virus	2.3e-194	70.9
QBG33738.1\|4580578_4581103_+\|tail	phage major tail tube protein	Q6QIA9	Burkholderia_phage	2.8e-68	69.5
QBG33739.1\|4581154_4581472_+\|tail	phage tail assembly protein	NA	NA	NA	NA
QBG33740.1\|4581431_4581560_+\|tail	GpE family phage tail protein	NA	NA	NA	NA
QBG33741.1\|4581656_4584008_+\|tail	phage tail tape measure protein	A4JWL0	Burkholderia_virus	8.1e-67	30.8
QBG33742.1\|4584007_4584961_+	chemotaxis protein	A4JWL1	Burkholderia_virus	7.9e-37	51.5
QBG33743.1\|4584960_4585170_+	hypothetical protein	A4JWL2	Burkholderia_virus	9.8e-17	60.3
QBG33744.1\|4585157_4586201_+	phage late control D family protein	Q6QIA2	Burkholderia_phage	3.2e-76	45.1
QBG33745.1\|4586210_4586933_+\|plate	phage baseplate assembly protein V	A0A067ZIM2	Vibrio_phage	5.1e-12	41.0
QBG33746.1\|4586941_4587181_+	hypothetical protein	NA	NA	NA	NA
QBG33747.1\|4587256_4587619_+	GtrA family protein	U5P0S6	Shigella_phage	9.6e-44	70.8
QBG33748.1\|4587615_4588545_+	glycosyltransferase	S5FKN0	Shigella_phage	6.7e-150	83.8
QBG33749.1\|4588544_4590092_+	hypothetical protein	B9UDL6	Salmonella_phage	1.5e-48	29.9
QBG33750.1\|4590255_4590615_+\|plate	baseplate protein	Q6QIA0	Burkholderia_phage	2.8e-35	64.2
QBG33751.1\|4590605_4591721_+\|plate	baseplate protein	Q6QI99	Burkholderia_phage	6.5e-99	51.2
QBG33752.1\|4591713_4592346_+\|tail	phage tail protein I	Q6QI98	Burkholderia_phage	1.1e-23	56.4
QBG33753.1\|4592348_4594007_+\|tail	phage tail protein	A0A0M3ULF6	Salmonella_phage	5.2e-52	52.2
QBG33754.1\|4594013_4594628_+	DUF4376 domain-containing protein	NA	NA	NA	NA
QBG33755.1\|4594624_4595080_+	hypothetical protein	NA	NA	NA	NA
QBG33756.1\|4595331_4595622_+	hypothetical protein	NA	NA	NA	NA
QBG33757.1\|4595818_4596547_+	hypothetical protein	A0A077SLK3	Escherichia_phage	1.9e-35	37.3

Anti-CRISPR protein detection

Acr ID	Acr position	Acr size	Homology with known anti	Neighbor HTH/AcRanker	Neighbor Aca	In prophage	Protospacer in prophage

Overview of predicted results

Overview of the results

Cas Category Instructions

Results visualization

1. CP036168

Click the left colored region to show detailed information

CRISPR-Cas detection and classification

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Click the colored protein region to show detailed information

Self-targeting detection

MGE targeting detection<

Prophage detection

Anti-CRISPR protein detection