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Overview of predicted results

Overview of the results

Contig_ID Contig_def CRISPR array number Contig Signature genes Self targeting spacer number Target MGE spacer number Prophage number Anti-CRISPR protein number
CP035758 Ktedonobacterales bacterium SCAWS-G2 chromosome, complete genome 25 crisprs csa3,WYL,cas6,Cas14u_CAS-V,RT,csx15,csx1,csx3,csm3gr7,csx10gr5,cas10,DinG,Cas9_archaeal,DEDDh,cas10d,csc2gr7,csc1gr5,cas4,cas14k,cas3,Cas14b_CAS-V-F,Cas14c_CAS-V-F 0 9 5 0

Results visualization

1. CP035758
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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_2 383499-383609 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_3 850736-850877 Orphan NA
2 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_4 1195165-1195254 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_5 1371918-1372398 Orphan NA
6 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_6 1520798-1520909 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_7 1521920-1522031 Orphan NA
1 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_8 1522490-1523046 Orphan NA
7 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_9 1523146-1524580 Orphan NA
19 spacers
csa3

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_10 1706280-1707347 Orphan NA
14 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_11 1708806-1709643 Orphan NA
11 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_12 2212214-2212311 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_13 2212702-2213464 Orphan NA
10 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_14 2215235-2216159 Orphan NA
12 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_15 2498557-2498813 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_16 2535981-2536230 Orphan NA
3 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_17 3781286-3781600 Orphan NA
4 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_18 4005919-4006008 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_20 5649300-5649411 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_23 7060633-7060729 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_24 7307552-7307644 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_26 7354601-7354688 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_27 7967871-7967968 Orphan NA
1 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_29 8358829-8360056 Orphan NA
16 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_28 8356940-8358735 Orphan NA
24 spacers

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CRISPR_ID CRISPR_location CRISPR_type Repeat_type Spacer_info Cas_protein_info CRISPR-Cas_info
CP035758_30 8547329-8548399 Orphan NA
14 spacers

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CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_ID Protospacer_location Mismatch Identity
CRISPR_ID Spacer_Info Spacer_region Spacer_length Hit_phage_ID Hit_phage_def Protospacer_location Mismatch Identity
CP035758_10 10.13|1707204|29|CP035758|CRISPRCasFinder,CRT 1707204-1707232 29 KF301602 Caulobacter phage Cr30, complete genome 24611-24639 5 0.828
CP035758_19 19.2|4437414|29|CP035758|CRT 4437414-4437442 29 NZ_AP022578 Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence 46374-46402 5 0.828
CP035758_18 18.1|4005950|28|CP035758|CRISPRCasFinder 4005950-4005977 28 MK493325 Synechococcus phage S-RIM8 isolate RW_62_0316, complete genome 95081-95108 6 0.786
CP035758_18 18.1|4005950|28|CP035758|CRISPRCasFinder 4005950-4005977 28 KX349286 Synechococcus phage S-RIM8 isolate RW_03_0807_WH8101, complete genome 95170-95197 6 0.786
CP035758_18 18.1|4005950|28|CP035758|CRISPRCasFinder 4005950-4005977 28 KX349290 Synechococcus phage S-RIM8 isolate RW_25_1112, complete genome 95081-95108 6 0.786
CP035758_18 18.1|4005950|28|CP035758|CRISPRCasFinder 4005950-4005977 28 KX349287 Synechococcus phage S-RIM8 isolate RW_06_0613, complete genome 95081-95108 6 0.786
CP035758_19 19.3|4437471|29|CP035758|CRT 4437471-4437499 29 JQ432563 Uncultured bacterium plasmid pMBUI1, complete sequence 1170-1198 7 0.759
CP035758_5 5.16|1372327|34|CP035758|CRISPRCasFinder 1372327-1372360 34 NZ_CP011399 Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence 63067-63100 8 0.765
CP035758_5 5.16|1372327|34|CP035758|CRISPRCasFinder 1372327-1372360 34 NC_009813 Listeria phage B054, complete genome 42217-42250 8 0.765
CP035758_10 10.13|1707204|29|CP035758|CRISPRCasFinder,CRT 1707204-1707232 29 NZ_CP043619 Rhodobacteraceae bacterium SH-1 plasmid p1, complete sequence 9217-9245 8 0.724
CP035758_19 19.1|4437357|29|CP035758|CRT 4437357-4437385 29 NC_016623 Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence 60822-60850 8 0.724
CP035758_13 13.9|2213323|31|CP035758|CRT 2213323-2213353 31 NC_010478 Synechococcus sp. PCC 7002 plasmid pAQ4, complete sequence 19228-19258 10 0.677
CP035758_29 29.14|8359829|37|CP035758|CRT 8359829-8359865 37 NZ_CP046318 Campylobacter coli strain FDAARGOS_735 plasmid unnamed1, complete sequence 7171-7207 10 0.73
CP035758_29 29.14|8359829|37|CP035758|CRT 8359829-8359865 37 NZ_CP046318 Campylobacter coli strain FDAARGOS_735 plasmid unnamed1, complete sequence 15049-15085 10 0.73
CP035758_19 19.6|4437471|34|CP035758|CRISPRCasFinder 4437471-4437504 34 NC_042014 Arthrobacter phage Piccoletto, complete genome 35921-35954 11 0.676
CP035758_29 29.14|8359829|37|CP035758|CRT 8359829-8359865 37 NZ_CP046318 Campylobacter coli strain FDAARGOS_735 plasmid unnamed1, complete sequence 22926-22962 11 0.703

1. spacer 10.13|1707204|29|CP035758|CRISPRCasFinder,CRT matches to KF301602 (Caulobacter phage Cr30, complete genome) position: , mismatch: 5, identity: 0.828

tccttatccacagcatcttttggaagatt	CRISPR spacer
accttatcaacagtatcttttggaagttg	Protospacer
 ******* ****.************ * 

2. spacer 19.2|4437414|29|CP035758|CRT matches to NZ_AP022578 (Mycolicibacterium aubagnense strain JCM 15296 plasmid pJCM15296, complete sequence) position: , mismatch: 5, identity: 0.828

cgccctcggctccgggcaatctggacagt-	CRISPR spacer
agccgtcggctccgggcaatct-gacatcg	Protospacer
 *** ***************** **** . 

3. spacer 18.1|4005950|28|CP035758|CRISPRCasFinder matches to MK493325 (Synechococcus phage S-RIM8 isolate RW_62_0316, complete genome) position: , mismatch: 6, identity: 0.786

ttagttttgctcttgcttgccagttata	CRISPR spacer
ttgcggatgctcttacttgccagttata	Protospacer
**.    *******.*************

4. spacer 18.1|4005950|28|CP035758|CRISPRCasFinder matches to KX349286 (Synechococcus phage S-RIM8 isolate RW_03_0807_WH8101, complete genome) position: , mismatch: 6, identity: 0.786

ttagttttgctcttgcttgccagttata	CRISPR spacer
ttgcggatgctcttacttgccagttata	Protospacer
**.    *******.*************

5. spacer 18.1|4005950|28|CP035758|CRISPRCasFinder matches to KX349290 (Synechococcus phage S-RIM8 isolate RW_25_1112, complete genome) position: , mismatch: 6, identity: 0.786

ttagttttgctcttgcttgccagttata	CRISPR spacer
ttgcggatgctcttacttgccagttata	Protospacer
**.    *******.*************

6. spacer 18.1|4005950|28|CP035758|CRISPRCasFinder matches to KX349287 (Synechococcus phage S-RIM8 isolate RW_06_0613, complete genome) position: , mismatch: 6, identity: 0.786

ttagttttgctcttgcttgccagttata	CRISPR spacer
ttgcggatgctcttacttgccagttata	Protospacer
**.    *******.*************

7. spacer 19.3|4437471|29|CP035758|CRT matches to JQ432563 (Uncultured bacterium plasmid pMBUI1, complete sequence) position: , mismatch: 7, identity: 0.759

tacgccgggcgctagccagcctagcagta	CRISPR spacer
gccaccggccgctagccaggctagcagcc	Protospacer
  *.**** ********** *******. 

8. spacer 5.16|1372327|34|CP035758|CRISPRCasFinder matches to NZ_CP011399 (Listeria monocytogenes strain CFSAN008100 plasmid pCFSAN008100, complete sequence) position: , mismatch: 8, identity: 0.765

tttgcaaagaagctgacaaaattattcgttttcg	CRISPR spacer
tgtctaaagaagatgacaaaatgattcgtcatct	Protospacer
* * .******* ********* ******. ** 

9. spacer 5.16|1372327|34|CP035758|CRISPRCasFinder matches to NC_009813 (Listeria phage B054, complete genome) position: , mismatch: 8, identity: 0.765

tttgcaaagaagctgacaaaattattcgttttcg	CRISPR spacer
tgtctaaagaagatgacaaaataattcgtcatct	Protospacer
* * .******* ********* ******. ** 

10. spacer 10.13|1707204|29|CP035758|CRISPRCasFinder,CRT matches to NZ_CP043619 (Rhodobacteraceae bacterium SH-1 plasmid p1, complete sequence) position: , mismatch: 8, identity: 0.724

tccttatccacagcatcttttggaagatt	CRISPR spacer
agtggatccactgcatctcttggaagatg	Protospacer
  .  ****** ******.********* 

11. spacer 19.1|4437357|29|CP035758|CRT matches to NC_016623 (Azospirillum lipoferum 4B plasmid AZO_p3, complete sequence) position: , mismatch: 8, identity: 0.724

tgccttcggccctaaccagcctagcagca	CRISPR spacer
tgccttcggccctgaccagcccgtcgaag	Protospacer
*************.*******.. *.. .

12. spacer 13.9|2213323|31|CP035758|CRT matches to NC_010478 (Synechococcus sp. PCC 7002 plasmid pAQ4, complete sequence) position: , mismatch: 10, identity: 0.677

gtcctacttccaaaggtgcattaactcccgt	CRISPR spacer
ttcctccttcaaaaggtgcattaaaagtaaa	Protospacer
 **** **** *************   . . 

13. spacer 29.14|8359829|37|CP035758|CRT matches to NZ_CP046318 (Campylobacter coli strain FDAARGOS_735 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

ttcgcctacttcttgaagtaggagtgattctggtaaa	CRISPR spacer
agctcctacttctttaagtaggagtggttcacaataa	Protospacer
  * ********** ***********.***  .  **

14. spacer 29.14|8359829|37|CP035758|CRT matches to NZ_CP046318 (Campylobacter coli strain FDAARGOS_735 plasmid unnamed1, complete sequence) position: , mismatch: 10, identity: 0.73

ttcgcctacttcttgaagtaggagtgattctggtaaa	CRISPR spacer
agctcctacttctttaagtaggagtggttcacaataa	Protospacer
  * ********** ***********.***  .  **

15. spacer 19.6|4437471|34|CP035758|CRISPRCasFinder matches to NC_042014 (Arthrobacter phage Piccoletto, complete genome) position: , mismatch: 11, identity: 0.676

tacgccgggcgctagccagcctagcagtattaac	CRISPR spacer
ccagtgtggcgcgagccagccgagcagtatttcg	Protospacer
.  *.  ***** ******** *********   

16. spacer 29.14|8359829|37|CP035758|CRT matches to NZ_CP046318 (Campylobacter coli strain FDAARGOS_735 plasmid unnamed1, complete sequence) position: , mismatch: 11, identity: 0.703

ttcgcctacttcttgaagtaggagtgattctggtaaa	CRISPR spacer
agctcctacttctttaagtaggagtggttcacaatat	Protospacer
  * ********** ***********.***  .  * 

Region Region Position Protein_number Hit_taxonomy Key_proteins Att_site Prophage annotation
DBSCAN-SWA_1 861295 : 875577 7 Liberibacter_phage(33.33%) NA NA
DBSCAN-SWA_2 2429883 : 2468736 32 Acidianus_tailed_spindle_virus(25.0%) transposase NA
DBSCAN-SWA_3 3362951 : 3435333 47 Tupanvirus(60.0%) transposase NA
DBSCAN-SWA_4 3448468 : 3500639 48 uncultured_virus(33.33%) transposase,integrase attL 3443369:3443383|attR 3503768:3503782
DBSCAN-SWA_5 8739719 : 8747922 7 Tupanvirus(50.0%) NA NA
Acr ID Acr position Acr size Homology with known anti Neighbor HTH/AcRanker Neighbor Aca In prophage Protospacer in prophage